Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486280 | RWV79288.1 | 58.824 | 68 | 19 | 1 | 1 | 59 | 5 | 72 | 1.22e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486280 | A0A444C094 | 58.824 | 68 | 19 | 1 | 1 | 59 | 5 | 72 | 5.85e-18 | 85.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0486280 | 0.803338 | 3.656808e-49 | -8.615850e-47 |
| Msa0270520 | Msa0486280 | 0.816489 | 5.386246e-52 | -8.615850e-47 |
| Msa0486280 | Msa0813400 | 0.802126 | 6.505679e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486280 | MtrunA17_Chr1g0172911 | 42.593 | 108 | 12 | 1 | 2 | 59 | 17 | 124 | 9.23e-18 | 72.8 |
| Msa0486280 | MtrunA17_Chr2g0307971 | 66.667 | 42 | 14 | 0 | 18 | 59 | 231 | 272 | 3.11e-13 | 63.9 |
| Msa0486280 | MtrunA17_Chr4g0061781 | 64.286 | 42 | 15 | 0 | 18 | 59 | 232 | 273 | 7.48e-12 | 60.1 |
| Msa0486280 | MtrunA17_Chr6g0455571 | 58.696 | 46 | 19 | 0 | 18 | 63 | 231 | 276 | 1.79e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAATATTGCCCATTAT+TGG | 0.162460 | 3_4:-4177027 | None:intergenic |
| TATGCTCGGTTAGCCAATAA+TGG | 0.303975 | 3_4:+4177014 | Msa0486280:intron |
| GATTGCTGCATTTCAGTTTA+CGG | 0.324679 | 3_4:+4179688 | Msa0486280:CDS |
| TCTCTTCAGATTGAGGAGTT+TGG | 0.394630 | 3_4:+4177095 | Msa0486280:CDS |
| TAGATATTCTCTTCAGATTG+AGG | 0.418166 | 3_4:+4177088 | Msa0486280:CDS |
| AATCGCAACAACACCAGAAC+AGG | 0.425550 | 3_4:-4179669 | None:intergenic |
| GATTGAGGAGTTTGGCAGAA+AGG | 0.441224 | 3_4:+4177103 | Msa0486280:CDS |
| CTGCATTTCAGTTTACGGCT+TGG | 0.452889 | 3_4:+4179693 | Msa0486280:CDS |
| GGCTTGGAATGGATCACTGT+TGG | 0.458788 | 3_4:+4179709 | Msa0486280:CDS |
| ATGCTCGGTTAGCCAATAAT+GGG | 0.478760 | 3_4:+4177015 | Msa0486280:intron |
| TTTCAGTTTACGGCTTGGAA+TGG | 0.503241 | 3_4:+4179698 | Msa0486280:CDS |
| GCTTGGAATGGATCACTGTT+GGG | 0.518815 | 3_4:+4179710 | Msa0486280:CDS |
| TACTTGATGGTGTCGTGCGA+TGG | 0.525671 | 3_4:+4176318 | Msa0486280:CDS |
| TTGATGGTGTCGTGCGATGG+AGG | 0.569382 | 3_4:+4176321 | Msa0486280:CDS |
| TCAAAATCGCGAAGGCTCGA+CGG | 0.600893 | 3_4:-4179640 | None:intergenic |
| TAAGAGCACTTAAATTGACT+CGG | 0.611739 | 3_4:-4177067 | None:intergenic |
| GGTTCGAATCAAAATCGCGA+AGG | 0.662251 | 3_4:-4179648 | None:intergenic |
| AGGATTGAATCAAATGAGAG+CGG | 0.700090 | 3_4:+4176341 | Msa0486280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAGATGTATTTTTTAAA+AGG | + | chr3_4:4174089-4174108 | Msa0486280:intron | 10.0% |
| !!! | TATAAATTTTCATATTAAGT+AGG | + | chr3_4:4175528-4175547 | Msa0486280:intron | 10.0% |
| !! | ATAATTTAATACTATACAAA+AGG | - | chr3_4:4177537-4177556 | None:intergenic | 10.0% |
| !! | TAAAAAAAACAACAAAAAAA+TGG | + | chr3_4:4178083-4178102 | Msa0486280:intron | 10.0% |
| !!! | TTTTAAAAGGAAGAAAAAAT+AGG | + | chr3_4:4174102-4174121 | Msa0486280:intron | 15.0% |
| !!! | GCAGATATATATTTTTTTTA+AGG | + | chr3_4:4174162-4174181 | Msa0486280:intron | 15.0% |
| !! | TATAAAATCTTATGAACAAT+AGG | - | chr3_4:4174509-4174528 | None:intergenic | 15.0% |
| !!! | TTAGTTTATGATTTTTCTTT+TGG | + | chr3_4:4175279-4175298 | Msa0486280:intron | 15.0% |
| !!! | TATAGTTTTTCCAAATATAT+GGG | + | chr3_4:4175907-4175926 | Msa0486280:intron | 15.0% |
| !!! | TTTTGCTAAATTTTGAAATA+AGG | - | chr3_4:4176019-4176038 | None:intergenic | 15.0% |
| !! | TGATTATTATCTGATTTAAT+TGG | + | chr3_4:4176444-4176463 | Msa0486280:intron | 15.0% |
| !! | AAAAAAAAAAAAAACTGATC+TGG | - | chr3_4:4176829-4176848 | None:intergenic | 15.0% |
| !! | GAAAATATCGAAAAAAAATT+AGG | + | chr3_4:4178709-4178728 | Msa0486280:intron | 15.0% |
| !!! | AAAATTAGGAAATTTTTTGT+AGG | + | chr3_4:4178723-4178742 | Msa0486280:intron | 15.0% |
| !! | AAAATAGGATTTAATGTACA+TGG | + | chr3_4:4174117-4174136 | Msa0486280:intron | 20.0% |
| !! | AAATAGGATTTAATGTACAT+GGG | + | chr3_4:4174118-4174137 | Msa0486280:intron | 20.0% |
| !! | ATTGTGAAAATAAGATCATA+TGG | - | chr3_4:4174374-4174393 | None:intergenic | 20.0% |
| !! | GCAAAAAATCTATAAATATG+TGG | - | chr3_4:4174418-4174437 | None:intergenic | 20.0% |
| !! | ATTTGATTGAATGTTTGAAT+TGG | + | chr3_4:4174653-4174672 | Msa0486280:intron | 20.0% |
| !! | TTTGATTGAATGTTTGAATT+GGG | + | chr3_4:4174654-4174673 | Msa0486280:intron | 20.0% |
| !! | CATATATTTGGAAAAACTAT+AGG | - | chr3_4:4175908-4175927 | None:intergenic | 20.0% |
| !!! | CTATAGTTTTTCCAAATATA+TGG | + | chr3_4:4175906-4175925 | Msa0486280:intron | 20.0% |
| !!! | ATAGTTTTTCCAAATATATG+GGG | + | chr3_4:4175908-4175927 | Msa0486280:intron | 20.0% |
| !! | ACAGAGATAGATAATATATT+GGG | + | chr3_4:4176215-4176234 | Msa0486280:intron | 20.0% |
| !!! | TTTTTAAAGTTTAGTTGTGT+TGG | + | chr3_4:4176401-4176420 | Msa0486280:intron | 20.0% |
| !!! | TTTTAAAGTTTAGTTGTGTT+GGG | + | chr3_4:4176402-4176421 | Msa0486280:intron | 20.0% |
| !! | GTTTCAAGATTTATTTGATT+TGG | + | chr3_4:4176667-4176686 | Msa0486280:intron | 20.0% |
| !!! | ATTAAGCTTTTTCTATAATC+AGG | + | chr3_4:4177264-4177283 | Msa0486280:intron | 20.0% |
| !!! | TTGCATATTAATTTTTACCA+AGG | - | chr3_4:4177931-4177950 | None:intergenic | 20.0% |
| !!! | ATTTTGAAAATAGTCTTGAA+GGG | - | chr3_4:4179084-4179103 | None:intergenic | 20.0% |
| !! | TTTTGTAGATATATGTTGCA+TGG | + | chr3_4:4174188-4174207 | Msa0486280:intron | 25.0% |
| !!! | GATTTTTTGCTTTAAGTTGT+TGG | + | chr3_4:4174428-4174447 | Msa0486280:intron | 25.0% |
| !!! | AGATTTTATAACTAGCTTCA+AGG | + | chr3_4:4174519-4174538 | Msa0486280:intron | 25.0% |
| ! | TTGATTGAATGTTTGAATTG+GGG | + | chr3_4:4174655-4174674 | Msa0486280:intron | 25.0% |
| ! | ATTTGGCGTTAAATTATTAC+CGG | - | chr3_4:4174842-4174861 | None:intergenic | 25.0% |
| ! | TAATAATTTAACGCCAAATG+AGG | + | chr3_4:4174843-4174862 | Msa0486280:intron | 25.0% |
| ! | AATAATTTAACGCCAAATGA+GGG | + | chr3_4:4174844-4174863 | Msa0486280:intron | 25.0% |
| !!! | TTTCTTTTGGATATTTTGAC+AGG | + | chr3_4:4175292-4175311 | Msa0486280:intron | 25.0% |
| ! | TACGATAGATATTATCTGTT+AGG | + | chr3_4:4175333-4175352 | Msa0486280:intron | 25.0% |
| ! | TCAAAAATTGAAGTGATATG+AGG | + | chr3_4:4175488-4175507 | Msa0486280:intron | 25.0% |
| ! | CAAAAATTGAAGTGATATGA+GGG | + | chr3_4:4175489-4175508 | Msa0486280:intron | 25.0% |
| ! | GAGTTAATAATCCTATTAGA+TGG | - | chr3_4:4175572-4175591 | None:intergenic | 25.0% |
| !! | TCTGTTATTTACCATCTAAT+AGG | + | chr3_4:4175605-4175624 | Msa0486280:intron | 25.0% |
| ! | TTATTTACCATCTAATAGGA+AGG | + | chr3_4:4175609-4175628 | Msa0486280:intron | 25.0% |
| ! | TATTATACCTTCCTATTAGA+TGG | - | chr3_4:4175619-4175638 | None:intergenic | 25.0% |
| ! | AGTTGTTGAATTTAAATGAG+TGG | + | chr3_4:4175663-4175682 | Msa0486280:intron | 25.0% |
| ! | AATTTAAATGAGTGGATCTA+TGG | + | chr3_4:4175671-4175690 | Msa0486280:intron | 25.0% |
| ! | TAATCCCAAATTGAGTTTAT+TGG | + | chr3_4:4175877-4175896 | Msa0486280:intron | 25.0% |
| ! | GATACCAATAAACTCAATTT+GGG | - | chr3_4:4175884-4175903 | None:intergenic | 25.0% |
| ! | TGATACCAATAAACTCAATT+TGG | - | chr3_4:4175885-4175904 | None:intergenic | 25.0% |
| !! | TAGTTTTTCCAAATATATGG+GGG | + | chr3_4:4175909-4175928 | Msa0486280:intron | 25.0% |
| ! | TTCTTTGATTCAATTCATGA+AGG | + | chr3_4:4176074-4176093 | Msa0486280:intron | 25.0% |
| !! | GTATGAATTTTACTATCTCT+AGG | - | chr3_4:4176146-4176165 | None:intergenic | 25.0% |
| ! | AAATTCATACTTTGAACCTT+TGG | + | chr3_4:4176156-4176175 | Msa0486280:intron | 25.0% |
| ! | GACAGAGATAGATAATATAT+TGG | + | chr3_4:4176214-4176233 | Msa0486280:intron | 25.0% |
| ! | TAAAAACAATGGTTACTTGA+TGG | + | chr3_4:4176305-4176324 | Msa0486280:CDS | 25.0% |
| !! | TTTAAAGTTTAGTTGTGTTG+GGG | + | chr3_4:4176403-4176422 | Msa0486280:intron | 25.0% |
| ! | AACCAAGAAAACATAATTGA+GGG | - | chr3_4:4176939-4176958 | None:intergenic | 25.0% |
| ! | AAACCAAGAAAACATAATTG+AGG | - | chr3_4:4176940-4176959 | None:intergenic | 25.0% |
| ! | TTGCCAAATTCAAAAGTAAA+TGG | + | chr3_4:4176958-4176977 | Msa0486280:intron | 25.0% |
| !!! | ACACCATTTACTTTTGAATT+TGG | - | chr3_4:4176964-4176983 | None:intergenic | 25.0% |
| ! | ATTTGAATTGAACTTATGCT+CGG | + | chr3_4:4177000-4177019 | Msa0486280:intron | 25.0% |
| ! | TTAGTGATAATACAATAGTC+TGG | + | chr3_4:4177145-4177164 | Msa0486280:intron | 25.0% |
| ! | AACTAAAACTTTAGTAGGTA+TGG | + | chr3_4:4177204-4177223 | Msa0486280:intron | 25.0% |
| !! | TCTTTTATTGTTTGAACATC+AGG | + | chr3_4:4177290-4177309 | Msa0486280:intron | 25.0% |
| ! | ATGAATATATGAAACAGATC+TGG | + | chr3_4:4177387-4177406 | Msa0486280:intron | 25.0% |
| !! | TATACAAAAGGTTTTCACAT+CGG | - | chr3_4:4177525-4177544 | None:intergenic | 25.0% |
| ! | ATTATCACATATCAAATCTG+TGG | + | chr3_4:4177552-4177571 | Msa0486280:intron | 25.0% |
| ! | ATATCATTTCACATCTGATA+CGG | - | chr3_4:4177617-4177636 | None:intergenic | 25.0% |
| ! | CTTATGAAACAATGAACAAA+GGG | + | chr3_4:4177997-4178016 | Msa0486280:intron | 25.0% |
| !! | AACAAAGGGTTAGTAATAAT+AGG | + | chr3_4:4178011-4178030 | Msa0486280:intron | 25.0% |
| ! | CATTGAATAGTAGAAAAAAG+TGG | + | chr3_4:4178034-4178053 | Msa0486280:intron | 25.0% |
| ! | GAAAATAAAGCATATCAACA+TGG | + | chr3_4:4178060-4178079 | Msa0486280:intron | 25.0% |
| ! | AATTATAAGCCAAGAAATCA+TGG | + | chr3_4:4178223-4178242 | Msa0486280:intron | 25.0% |
| ! | AATTTCATACCATGATTTCT+TGG | - | chr3_4:4178235-4178254 | None:intergenic | 25.0% |
| ! | TGTGTAATTAGTGCAAAAAT+AGG | - | chr3_4:4178261-4178280 | None:intergenic | 25.0% |
| !!! | TGTTTTGAATGTGTGATAAT+TGG | - | chr3_4:4178316-4178335 | None:intergenic | 25.0% |
| !!! | ATATTTTGGCTCATGATAAT+TGG | - | chr3_4:4178395-4178414 | None:intergenic | 25.0% |
| ! | ATTATCATGAGCCAAAATAT+TGG | + | chr3_4:4178395-4178414 | Msa0486280:intron | 25.0% |
| !!! | ACATTTTAGCTCCAATATTT+TGG | - | chr3_4:4178409-4178428 | None:intergenic | 25.0% |
| !! | TTTTGCATGTTGAAAATTGA+TGG | - | chr3_4:4178499-4178518 | None:intergenic | 25.0% |
| !! | ATCAATTTTCAACATGCAAA+AGG | + | chr3_4:4178498-4178517 | Msa0486280:intron | 25.0% |
| ! | CAAATGTAAAAGAAATCACA+AGG | + | chr3_4:4178551-4178570 | Msa0486280:intron | 25.0% |
| ! | TGTGTGATTGAATATTCAAA+GGG | - | chr3_4:4179027-4179046 | None:intergenic | 25.0% |
| !!! | TTTTGAAAATAGTCTTGAAG+GGG | - | chr3_4:4179083-4179102 | None:intergenic | 25.0% |
| !!! | GATTTTGAAAATAGTCTTGA+AGG | - | chr3_4:4179085-4179104 | None:intergenic | 25.0% |
| ! | GGACAAATTCATCAAAATAA+CGG | + | chr3_4:4179231-4179250 | Msa0486280:intron | 25.0% |
| TGTAGTTGAAATATGCTTTG+AGG | + | chr3_4:4174066-4174085 | Msa0486280:intron | 30.0% | |
| TGATTGTCTCTATAATTGCA+GGG | + | chr3_4:4174276-4174295 | Msa0486280:intron | 30.0% | |
| ! | GTGATAGCTTTTTAACAAGA+GGG | + | chr3_4:4174316-4174335 | Msa0486280:intron | 30.0% |
| CTAGTAAGCATATGAACAAT+AGG | - | chr3_4:4174548-4174567 | None:intergenic | 30.0% | |
| ! | TCAATATATAACTAGCTTCC+AGG | + | chr3_4:4174569-4174588 | Msa0486280:intron | 30.0% |
| TATATTAAACTAAGGCTTCC+TGG | - | chr3_4:4174590-4174609 | None:intergenic | 30.0% | |
| GAATACTCATGCACAAATAT+AGG | + | chr3_4:4175090-4175109 | Msa0486280:intron | 30.0% | |
| TGATTAATGTTGTGAACCAA+AGG | + | chr3_4:4175179-4175198 | Msa0486280:intron | 30.0% | |
| TCATATTAAGTAGGACCAAT+TGG | + | chr3_4:4175537-4175556 | Msa0486280:intron | 30.0% | |
| ! | GAAGGTATAATATGTGAGAA+GGG | + | chr3_4:4175627-4175646 | Msa0486280:intron | 30.0% |
| AATATGTGAGAAGGGTTAAA+TGG | + | chr3_4:4175635-4175654 | Msa0486280:intron | 30.0% | |
| ATATGTGAGAAGGGTTAAAT+GGG | + | chr3_4:4175636-4175655 | Msa0486280:intron | 30.0% | |
| GAAATCACACTTGCAATATT+GGG | + | chr3_4:4175769-4175788 | Msa0486280:intron | 30.0% | |
| AAAATGACTGCTAATGTTGT+AGG | - | chr3_4:4175839-4175858 | None:intergenic | 30.0% | |
| TGAACAAATCAATGCATAGT+TGG | - | chr3_4:4175958-4175977 | None:intergenic | 30.0% | |
| ATTTAGCAAAAACTGCATCA+AGG | + | chr3_4:4176028-4176047 | Msa0486280:intron | 30.0% | |
| ! | ACTGCATCAAGGATTAATTT+TGG | + | chr3_4:4176039-4176058 | Msa0486280:intron | 30.0% |
| TATTATCTATCTCTGTCTCA+TGG | - | chr3_4:4176211-4176230 | None:intergenic | 30.0% | |
| TTAAAGTTTAGTTGTGTTGG+GGG | + | chr3_4:4176404-4176423 | Msa0486280:intron | 30.0% | |
| AATTGGACAGATATGTGATA+TGG | + | chr3_4:4176461-4176480 | Msa0486280:intron | 30.0% | |
| ! | ATTGGATAAAGCTTTCCTTT+TGG | + | chr3_4:4176527-4176546 | Msa0486280:intron | 30.0% |
| ! | TTGGATAAAGCTTTCCTTTT+GGG | + | chr3_4:4176528-4176547 | Msa0486280:intron | 30.0% |
| !!! | GTTAGTTTTTCATTCCATGT+GGG | + | chr3_4:4176561-4176580 | Msa0486280:intron | 30.0% |
| ! | TACCCTCAATTATGTTTTCT+TGG | + | chr3_4:4176934-4176953 | Msa0486280:intron | 30.0% |
| GAGCATAAGTTCAATTCAAA+TGG | - | chr3_4:4177001-4177020 | None:intergenic | 30.0% | |
| CTCTAAATATTGCCCATTAT+TGG | - | chr3_4:4177030-4177049 | None:intergenic | 30.0% | |
| !! | TAAGAGCACTTAAATTGACT+CGG | - | chr3_4:4177070-4177089 | None:intergenic | 30.0% |
| TAGATATTCTCTTCAGATTG+AGG | + | chr3_4:4177088-4177107 | Msa0486280:CDS | 30.0% | |
| !!! | CTACTAAAGTTTTAGTTCAC+AGG | - | chr3_4:4177201-4177220 | None:intergenic | 30.0% |
| CTGTGAACTAAAACTTTAGT+AGG | + | chr3_4:4177199-4177218 | Msa0486280:intron | 30.0% | |
| TTTAGTAGGTATGGATCTAT+AGG | + | chr3_4:4177213-4177232 | Msa0486280:intron | 30.0% | |
| ! | CCTATCAGTATTTTTCACAT+CGG | + | chr3_4:4177443-4177462 | Msa0486280:intron | 30.0% |
| CAAATGCGTATATTTCACAT+CGG | - | chr3_4:4177481-4177500 | None:intergenic | 30.0% | |
| ! | TGATAAGTAGTTTTCCACAT+CGG | - | chr3_4:4177586-4177605 | None:intergenic | 30.0% |
| TGGAAAACTACTTATCACAA+CGG | + | chr3_4:4177589-4177608 | Msa0486280:intron | 30.0% | |
| GAAATGACATTTAACATCAG+TGG | - | chr3_4:4177698-4177717 | None:intergenic | 30.0% | |
| GCATGTTTAGATGTATGTTT+AGG | - | chr3_4:4177731-4177750 | None:intergenic | 30.0% | |
| AGGCTTAGAATGTAATACTT+AGG | - | chr3_4:4177911-4177930 | None:intergenic | 30.0% | |
| AAGTATTACATTCTAAGCCT+TGG | + | chr3_4:4177911-4177930 | Msa0486280:intron | 30.0% | |
| GCTTATGAAACAATGAACAA+AGG | + | chr3_4:4177996-4178015 | Msa0486280:intron | 30.0% | |
| ! | CTTTGAAAATGCCAAAATGT+GGG | - | chr3_4:4178165-4178184 | None:intergenic | 30.0% |
| !! | CACATTTTGGCATTTTCAAA+GGG | + | chr3_4:4178164-4178183 | Msa0486280:intron | 30.0% |
| !! | ACATTTTGGCATTTTCAAAG+GGG | + | chr3_4:4178165-4178184 | Msa0486280:intron | 30.0% |
| GTTGCATAATATGTAGTGTT+TGG | - | chr3_4:4178342-4178361 | None:intergenic | 30.0% | |
| ! | TGTAGGATTTTTAACGAAAC+AGG | + | chr3_4:4178740-4178759 | Msa0486280:intron | 30.0% |
| ! | GTAGGATTTTTAACGAAACA+GGG | + | chr3_4:4178741-4178760 | Msa0486280:intron | 30.0% |
| ! | TAGGATTTTTAACGAAACAG+GGG | + | chr3_4:4178742-4178761 | Msa0486280:intron | 30.0% |
| CAAAAAAATGCAAACACTCA+AGG | + | chr3_4:4178814-4178833 | Msa0486280:intron | 30.0% | |
| AGTCTAAAAAGGAATTGTGT+TGG | + | chr3_4:4178929-4178948 | Msa0486280:intron | 30.0% | |
| GATTGAATATTCAAAGGGAA+AGG | - | chr3_4:4179022-4179041 | None:intergenic | 30.0% | |
| CTGTGTGATTGAATATTCAA+AGG | - | chr3_4:4179028-4179047 | None:intergenic | 30.0% | |
| ! | TTTGAAAATAGTCTTGAAGG+GGG | - | chr3_4:4179082-4179101 | None:intergenic | 30.0% |
| TAGATTCATACAAACAGCAA+CGG | + | chr3_4:4179165-4179184 | Msa0486280:intron | 30.0% | |
| CATGCTAAACACAAGATAAA+CGG | + | chr3_4:4179203-4179222 | Msa0486280:intron | 30.0% | |
| GTGATTGTCTCTATAATTGC+AGG | + | chr3_4:4174275-4174294 | Msa0486280:intron | 35.0% | |
| GATTGTCTCTATAATTGCAG+GGG | + | chr3_4:4174277-4174296 | Msa0486280:intron | 35.0% | |
| !!! | CAGGGGACTACTTTTTTTAT+GGG | + | chr3_4:4174294-4174313 | Msa0486280:intron | 35.0% |
| ! | GGTGATAGCTTTTTAACAAG+AGG | + | chr3_4:4174315-4174334 | Msa0486280:intron | 35.0% |
| ! | ATAGCTTTTTAACAAGAGGG+AGG | + | chr3_4:4174319-4174338 | Msa0486280:intron | 35.0% |
| ! | TAGCTTTTTAACAAGAGGGA+GGG | + | chr3_4:4174320-4174339 | Msa0486280:intron | 35.0% |
| CTTATGAACAATAGGCTTCA+TGG | - | chr3_4:4174501-4174520 | None:intergenic | 35.0% | |
| !! | AGGTGTTGTAAAATGGGTTT+TGG | + | chr3_4:4174744-4174763 | Msa0486280:intron | 35.0% |
| !!! | AAGAGAAGTAGCTTTTTCGA+TGG | - | chr3_4:4174912-4174931 | None:intergenic | 35.0% |
| TTCTTCAAGAAAGATGACAC+CGG | - | chr3_4:4174944-4174963 | None:intergenic | 35.0% | |
| GTCATCTTTCTTGAAGAAGA+AGG | + | chr3_4:4174946-4174965 | Msa0486280:intron | 35.0% | |
| ACATGCATGACTCTTCTTTA+AGG | - | chr3_4:4175058-4175077 | None:intergenic | 35.0% | |
| GATTACTAGGAGTAATCCTT+TGG | - | chr3_4:4175198-4175217 | None:intergenic | 35.0% | |
| AGGATTACTCCTAGTAATCA+AGG | + | chr3_4:4175199-4175218 | Msa0486280:intron | 35.0% | |
| TTACTCCTAGTAATCAAGGT+TGG | + | chr3_4:4175203-4175222 | Msa0486280:intron | 35.0% | |
| TGAAACCAACCTTGATTACT+AGG | - | chr3_4:4175211-4175230 | None:intergenic | 35.0% | |
| !! | AGTAATCAAGGTTGGTTTCA+TGG | + | chr3_4:4175211-4175230 | Msa0486280:intron | 35.0% |
| !! | GTAATCAAGGTTGGTTTCAT+GGG | + | chr3_4:4175212-4175231 | Msa0486280:intron | 35.0% |
| !!! | ATGGGTTGACTTGTACTTTT+AGG | + | chr3_4:4175230-4175249 | Msa0486280:intron | 35.0% |
| !!! | TTGGATATTTTGACAGGAAG+AGG | + | chr3_4:4175298-4175317 | Msa0486280:intron | 35.0% |
| AAAATATGGAGCTGAAGTGT+AGG | - | chr3_4:4175423-4175442 | None:intergenic | 35.0% | |
| ATTAAGTAGGACCAATTGGA+AGG | + | chr3_4:4175541-4175560 | Msa0486280:intron | 35.0% | |
| AGATGGTAATACCTTCCAAT+TGG | - | chr3_4:4175555-4175574 | None:intergenic | 35.0% | |
| !! | GGAAGGTATTACCATCTAAT+AGG | + | chr3_4:4175558-4175577 | Msa0486280:intron | 35.0% |
| ! | GGAAGGTATAATATGTGAGA+AGG | + | chr3_4:4175626-4175645 | Msa0486280:intron | 35.0% |
| !! | TCGCTACTCTAAAGTCTAAA+TGG | - | chr3_4:4175751-4175770 | None:intergenic | 35.0% |
| CGAAATCACACTTGCAATAT+TGG | + | chr3_4:4175768-4175787 | Msa0486280:intron | 35.0% | |
| TTCATACTTTGAACCTTTGG+AGG | + | chr3_4:4176159-4176178 | Msa0486280:intron | 35.0% | |
| TTCTTTGTGTGATTGTTTGC+AGG | + | chr3_4:4176276-4176295 | Msa0486280:intron | 35.0% | |
| TCTTTGTGTGATTGTTTGCA+GGG | + | chr3_4:4176277-4176296 | Msa0486280:intron | 35.0% | |
| GCAGGGGTTTATAAAAACAA+TGG | + | chr3_4:4176294-4176313 | Msa0486280:intron | 35.0% | |
| AGGATTGAATCAAATGAGAG+CGG | + | chr3_4:4176341-4176360 | Msa0486280:CDS | 35.0% | |
| ! | AAGTGTTTGGAACATGTGTT+TGG | + | chr3_4:4176368-4176387 | Msa0486280:intron | 35.0% |
| ! | GGAAAGCTTTATCCAATTCA+GGG | - | chr3_4:4176524-4176543 | None:intergenic | 35.0% |
| ! | AGGAAAGCTTTATCCAATTC+AGG | - | chr3_4:4176525-4176544 | None:intergenic | 35.0% |
| CATGGAATGAAAAACTAACC+TGG | - | chr3_4:4176560-4176579 | None:intergenic | 35.0% | |
| !!! | GGTTAGTTTTTCATTCCATG+TGG | + | chr3_4:4176560-4176579 | Msa0486280:intron | 35.0% |
| TCATTCCATGTGGGTATATT+TGG | + | chr3_4:4176570-4176589 | Msa0486280:intron | 35.0% | |
| TGAAGCAGAAAGTGGAAAAT+GGG | + | chr3_4:4176750-4176769 | Msa0486280:intron | 35.0% | |
| GACATATCAGACCAACTAAT+CGG | - | chr3_4:4176794-4176813 | None:intergenic | 35.0% | |
| ATTGTATGAGAGAAAACCAC+AGG | - | chr3_4:4176915-4176934 | None:intergenic | 35.0% | |
| GAAAGGTTATCAATCATCTG+TGG | + | chr3_4:4177120-4177139 | Msa0486280:intron | 35.0% | |
| CCGATGTGAAAAATACTGAT+AGG | - | chr3_4:4177446-4177465 | None:intergenic | 35.0% | |
| ! | ATCAGTATTTTTCACATCGG+TGG | + | chr3_4:4177446-4177465 | Msa0486280:intron | 35.0% |
| ! | TCAGTATTTTTCACATCGGT+GGG | + | chr3_4:4177447-4177466 | Msa0486280:intron | 35.0% |
| GCATTTGACATCAGTTTCAA+TGG | + | chr3_4:4177494-4177513 | Msa0486280:intron | 35.0% | |
| ! | GATAAGTAGTTTTCCACATC+GGG | - | chr3_4:4177585-4177604 | None:intergenic | 35.0% |
| AACCTCACCTTTAGTTACAT+CGG | + | chr3_4:4177645-4177664 | Msa0486280:intron | 35.0% | |
| !! | TGGAAATCGACTTTTCACAT+CGG | - | chr3_4:4177678-4177697 | None:intergenic | 35.0% |
| TCCATTGTCCTTTACATCAT+TGG | + | chr3_4:4177822-4177841 | Msa0486280:intron | 35.0% | |
| TATCTAGGCCAATGATGTAA+AGG | - | chr3_4:4177833-4177852 | None:intergenic | 35.0% | |
| ! | ATTGGCCTAGATACATTCTA+TGG | + | chr3_4:4177840-4177859 | Msa0486280:intron | 35.0% |
| CAAGACCATAGAATGTATCT+AGG | - | chr3_4:4177848-4177867 | None:intergenic | 35.0% | |
| ! | TCTTGCTTGCTTAGGAATTT+TGG | - | chr3_4:4178131-4178150 | None:intergenic | 35.0% |
| ! | CCTTTGAAAATGCCAAAATG+TGG | - | chr3_4:4178166-4178185 | None:intergenic | 35.0% |
| !! | CCACATTTTGGCATTTTCAA+AGG | + | chr3_4:4178163-4178182 | Msa0486280:intron | 35.0% |
| TCTCTTGTGACTTTCACATT+GGG | - | chr3_4:4178204-4178223 | None:intergenic | 35.0% | |
| TTCTCTTGTGACTTTCACAT+TGG | - | chr3_4:4178205-4178224 | None:intergenic | 35.0% | |
| AGATCTGTGTGAAGAAATGA+GGG | - | chr3_4:4178961-4178980 | None:intergenic | 35.0% | |
| GCTGTTTGTATGAATCTAAG+CGG | - | chr3_4:4179163-4179182 | None:intergenic | 35.0% | |
| AACACAAGATAAACGGATCA+CGG | + | chr3_4:4179210-4179229 | Msa0486280:intron | 35.0% | |
| ATCGATCTGGATTTAAAAGC+TGG | + | chr3_4:4179323-4179342 | Msa0486280:intron | 35.0% | |
| ATGATGCCTTGAGAATGAAT+CGG | + | chr3_4:4179430-4179449 | Msa0486280:intron | 35.0% | |
| AAATGAAACTCGATCTAACC+TGG | + | chr3_4:4179479-4179498 | Msa0486280:intron | 35.0% | |
| !!! | ATTTTGATTCGAACCTGTTC+TGG | + | chr3_4:4179656-4179675 | Msa0486280:CDS | 35.0% |
| GATTGCTGCATTTCAGTTTA+CGG | + | chr3_4:4179688-4179707 | Msa0486280:CDS | 35.0% | |
| !!! | GCAGGGGACTACTTTTTTTA+TGG | + | chr3_4:4174293-4174312 | Msa0486280:intron | 40.0% |
| TGTCCTAAAATCATGCTCTC+AGG | + | chr3_4:4174724-4174743 | Msa0486280:intron | 40.0% | |
| !! | ACACCTGAGAGCATGATTTT+AGG | - | chr3_4:4174730-4174749 | None:intergenic | 40.0% |
| ! | TGCTCTCAGGTGTTGTAAAA+TGG | + | chr3_4:4174737-4174756 | Msa0486280:intron | 40.0% |
| ! | GCTCTCAGGTGTTGTAAAAT+GGG | + | chr3_4:4174738-4174757 | Msa0486280:intron | 40.0% |
| GCATTAACTCACCAAATCTC+CGG | - | chr3_4:4174873-4174892 | None:intergenic | 40.0% | |
| TACTTCTCTTCTCAGATGTC+CGG | + | chr3_4:4174922-4174941 | Msa0486280:intron | 40.0% | |
| !! | AGATGTCTGGTTCTCTTCTT+CGG | + | chr3_4:4174990-4175009 | Msa0486280:intron | 40.0% |
| AGGTGTCAACTTCTTTCACA+TGG | + | chr3_4:4175110-4175129 | Msa0486280:intron | 40.0% | |
| TTGACATGCCCCCATATATT+TGG | - | chr3_4:4175920-4175939 | None:intergenic | 40.0% | |
| ! | AATGCATAGTTGGAGTGTCA+TGG | - | chr3_4:4175948-4175967 | None:intergenic | 40.0% |
| ! | CTTTGAACCTTTGGAGGAAA+TGG | + | chr3_4:4176165-4176184 | Msa0486280:intron | 40.0% |
| TGACAAACCATTTCCTCCAA+AGG | - | chr3_4:4176175-4176194 | None:intergenic | 40.0% | |
| CTTTGTGTGATTGTTTGCAG+GGG | + | chr3_4:4176278-4176297 | Msa0486280:intron | 40.0% | |
| TGGACAGATATGTGATATGG+TGG | + | chr3_4:4176464-4176483 | Msa0486280:intron | 40.0% | |
| TCAGACCAAATATACCCACA+TGG | - | chr3_4:4176578-4176597 | None:intergenic | 40.0% | |
| TATTACATCCTTGAGAGACG+AGG | + | chr3_4:4176697-4176716 | Msa0486280:intron | 40.0% | |
| CTGAAGCAGAAAGTGGAAAA+TGG | + | chr3_4:4176749-4176768 | Msa0486280:intron | 40.0% | |
| ATATCAGACCAACTAATCGG+TGG | - | chr3_4:4176791-4176810 | None:intergenic | 40.0% | |
| GAAAACCACAGGAAAGTTCA+GGG | - | chr3_4:4176904-4176923 | None:intergenic | 40.0% | |
| AGAAAACCACAGGAAAGTTC+AGG | - | chr3_4:4176905-4176924 | None:intergenic | 40.0% | |
| ! | TATGCTCGGTTAGCCAATAA+TGG | + | chr3_4:4177014-4177033 | Msa0486280:intron | 40.0% |
| ! | ATGCTCGGTTAGCCAATAAT+GGG | + | chr3_4:4177015-4177034 | Msa0486280:intron | 40.0% |
| TCTCTTCAGATTGAGGAGTT+TGG | + | chr3_4:4177095-4177114 | Msa0486280:CDS | 40.0% | |
| ACCTCACCTTTAGTTACATC+GGG | + | chr3_4:4177646-4177665 | Msa0486280:intron | 40.0% | |
| !! | GGAAATCGACTTTTCACATC+GGG | - | chr3_4:4177677-4177696 | None:intergenic | 40.0% |
| CTCACTTTAGATGTATGGCT+AGG | - | chr3_4:4177758-4177777 | None:intergenic | 40.0% | |
| ! | CTAGCCATACATCTAAAGTG+AGG | + | chr3_4:4177756-4177775 | Msa0486280:intron | 40.0% |
| CACACCTCACTTTAGATGTA+TGG | - | chr3_4:4177763-4177782 | None:intergenic | 40.0% | |
| GCCAATGATGTAAAGGACAA+TGG | - | chr3_4:4177826-4177845 | None:intergenic | 40.0% | |
| TATGGATCTCTTGCTTGCTT+AGG | - | chr3_4:4178139-4178158 | None:intergenic | 40.0% | |
| ! | GATCCATAACTCCCACATTT+TGG | + | chr3_4:4178151-4178170 | Msa0486280:intron | 40.0% |
| ATGCCAAAATGTGGGAGTTA+TGG | - | chr3_4:4178157-4178176 | None:intergenic | 40.0% | |
| ! | GGCATTTTCAAAGGGGTTTT+AGG | + | chr3_4:4178172-4178191 | Msa0486280:intron | 40.0% |
| CTCTTGTGACTTTCACATTG+GGG | - | chr3_4:4178203-4178222 | None:intergenic | 40.0% | |
| GTACTTGATGAGTGATCTTG+GGG | - | chr3_4:4178373-4178392 | None:intergenic | 40.0% | |
| GGTACTTGATGAGTGATCTT+GGG | - | chr3_4:4178374-4178393 | None:intergenic | 40.0% | |
| TGGTACTTGATGAGTGATCT+TGG | - | chr3_4:4178375-4178394 | None:intergenic | 40.0% | |
| ! | TTTCATTCTGGGTTGGGTTT+GGG | - | chr3_4:4178840-4178859 | None:intergenic | 40.0% |
| !! | TTTTCATTCTGGGTTGGGTT+TGG | - | chr3_4:4178841-4178860 | None:intergenic | 40.0% |
| ACCCAACCCAGAATGAAAAA+CGG | + | chr3_4:4178842-4178861 | Msa0486280:intron | 40.0% | |
| ATGAAAAACGGGTAGGGTTA+TGG | + | chr3_4:4178854-4178873 | Msa0486280:intron | 40.0% | |
| CAGTTGGGTGAAGTCTAAAA+AGG | + | chr3_4:4178918-4178937 | Msa0486280:intron | 40.0% | |
| GAGATCTGTGTGAAGAAATG+AGG | - | chr3_4:4178962-4178981 | None:intergenic | 40.0% | |
| AACTCTCTTCCTCTCTCTAA+TGG | + | chr3_4:4178987-4179006 | Msa0486280:intron | 40.0% | |
| TCAATCACACAGACATACAC+AGG | + | chr3_4:4179036-4179055 | Msa0486280:intron | 40.0% | |
| CACACATGCTTACACAAACA+CGG | + | chr3_4:4179111-4179130 | Msa0486280:intron | 40.0% | |
| ATTCATACAAACAGCAACGG+TGG | + | chr3_4:4179168-4179187 | Msa0486280:intron | 40.0% | |
| !! | ATACGAAGACAGTATCGATC+TGG | + | chr3_4:4179310-4179329 | Msa0486280:intron | 40.0% |
| AAGTGCAAATCGAACCAGAA+AGG | + | chr3_4:4179400-4179419 | Msa0486280:intron | 40.0% | |
| AGTGCAAATCGAACCAGAAA+GGG | + | chr3_4:4179401-4179420 | Msa0486280:intron | 40.0% | |
| TTTCCTCCGATTCATTCTCA+AGG | - | chr3_4:4179439-4179458 | None:intergenic | 40.0% | |
| CAAGAAAGGAGAAAAGCGAA+CGG | - | chr3_4:4179548-4179567 | None:intergenic | 40.0% | |
| TCCTTTCTTGTACTCGATTC+TGG | + | chr3_4:4179558-4179577 | Msa0486280:intron | 40.0% | |
| TCCAGAATCGAGTACAAGAA+AGG | - | chr3_4:4179562-4179581 | None:intergenic | 40.0% | |
| CTGAAGCAAGAAAGAAGGAA+GGG | - | chr3_4:4179591-4179610 | None:intergenic | 40.0% | |
| ! | TCTGAAGCAAGAAAGAAGGA+AGG | - | chr3_4:4179592-4179611 | None:intergenic | 40.0% |
| ! | CGAATCTGAAGCAAGAAAGA+AGG | - | chr3_4:4179596-4179615 | None:intergenic | 40.0% |
| ! | TTTCAGTTTACGGCTTGGAA+TGG | + | chr3_4:4179698-4179717 | Msa0486280:CDS | 40.0% |
| ! | GTCAACAAAGAAGAGGTACG+TGG | + | chr3_4:4174342-4174361 | Msa0486280:intron | 45.0% |
| CTCAGTCGTGTTGAAAGGAA+AGG | + | chr3_4:4174791-4174810 | Msa0486280:intron | 45.0% | |
| TAATGTTCATACGTCGTCGC+CGG | + | chr3_4:4174820-4174839 | Msa0486280:intron | 45.0% | |
| TAACGCCAAATGAGGGATAC+CGG | + | chr3_4:4174851-4174870 | Msa0486280:intron | 45.0% | |
| AATCTCCGGTATCCCTCATT+TGG | - | chr3_4:4174859-4174878 | None:intergenic | 45.0% | |
| AATGAGGGATACCGGAGATT+TGG | + | chr3_4:4174859-4174878 | Msa0486280:intron | 45.0% | |
| TTTCGATGGCGAGATATGTG+CGG | - | chr3_4:4174898-4174917 | None:intergenic | 45.0% | |
| TCAGACACGTAACAGATGTC+TGG | + | chr3_4:4174977-4174996 | Msa0486280:intron | 45.0% | |
| TTAGCGTGTGCATCTGAAGA+GGG | - | chr3_4:4175025-4175044 | None:intergenic | 45.0% | |
| ! | GACTCTTCTTTAAGGAGCAG+CGG | - | chr3_4:4175050-4175069 | None:intergenic | 45.0% |
| GTTAGGCTAGACTCAGTTTC+TGG | + | chr3_4:4175350-4175369 | Msa0486280:intron | 45.0% | |
| ATGGAGCTGAAGTGTAGGAA+GGG | - | chr3_4:4175418-4175437 | None:intergenic | 45.0% | |
| TATGGAGCTGAAGTGTAGGA+AGG | - | chr3_4:4175419-4175438 | None:intergenic | 45.0% | |
| CACGCTTATAGTCCCTGAAT+TGG | + | chr3_4:4176509-4176528 | Msa0486280:intron | 45.0% | |
| !!! | TTTCCTTTTGGGTTGATGCC+AGG | + | chr3_4:4176539-4176558 | Msa0486280:intron | 45.0% |
| TAACCTGGCATCAACCCAAA+AGG | - | chr3_4:4176545-4176564 | None:intergenic | 45.0% | |
| TGAGCTAACTACCATGAGGT+GGG | + | chr3_4:4176595-4176614 | Msa0486280:intron | 45.0% | |
| ACTTTCTGCTTCAGTCTAGG+AGG | - | chr3_4:4176743-4176762 | None:intergenic | 45.0% | |
| TCCTAGACTGAAGCAGAAAG+TGG | + | chr3_4:4176742-4176761 | Msa0486280:intron | 45.0% | |
| TCCACTTTCTGCTTCAGTCT+AGG | - | chr3_4:4176746-4176765 | None:intergenic | 45.0% | |
| CAATACCCTGAACTTTCCTG+TGG | + | chr3_4:4176896-4176915 | Msa0486280:intron | 45.0% | |
| GATTGAGGAGTTTGGCAGAA+AGG | + | chr3_4:4177103-4177122 | Msa0486280:CDS | 45.0% | |
| ACCCGATGTAACTAAAGGTG+AGG | - | chr3_4:4177650-4177669 | None:intergenic | 45.0% | |
| TCACCTTTAGTTACATCGGG+TGG | + | chr3_4:4177649-4177668 | Msa0486280:intron | 45.0% | |
| CACCTTTAGTTACATCGGGT+GGG | + | chr3_4:4177650-4177669 | Msa0486280:intron | 45.0% | |
| !! | CCCGTTTTTCATTCTGGGTT+GGG | - | chr3_4:4178846-4178865 | None:intergenic | 45.0% |
| CCCAACCCAGAATGAAAAAC+GGG | + | chr3_4:4178843-4178862 | Msa0486280:intron | 45.0% | |
| !! | ACCCGTTTTTCATTCTGGGT+TGG | - | chr3_4:4178847-4178866 | None:intergenic | 45.0% |
| ACCCAGAATGAAAAACGGGT+AGG | + | chr3_4:4178847-4178866 | Msa0486280:intron | 45.0% | |
| !! | CCCTACCCGTTTTTCATTCT+GGG | - | chr3_4:4178851-4178870 | None:intergenic | 45.0% |
| CCCAGAATGAAAAACGGGTA+GGG | + | chr3_4:4178848-4178867 | Msa0486280:intron | 45.0% | |
| !! | ACCCTACCCGTTTTTCATTC+TGG | - | chr3_4:4178852-4178871 | None:intergenic | 45.0% |
| AAACGGGTAGGGTTATGGAT+CGG | + | chr3_4:4178859-4178878 | Msa0486280:intron | 45.0% | |
| TACAAACAGCAACGGTGGAA+AGG | + | chr3_4:4179173-4179192 | Msa0486280:intron | 45.0% | |
| AGAACGCAAACCACAAGTCA+AGG | + | chr3_4:4179369-4179388 | Msa0486280:intron | 45.0% | |
| GAACGCAAACCACAAGTCAA+GGG | + | chr3_4:4179370-4179389 | Msa0486280:intron | 45.0% | |
| GCATCATCATGTTCCCTTTC+TGG | - | chr3_4:4179417-4179436 | None:intergenic | 45.0% | |
| ATGCCTTGAGAATGAATCGG+AGG | + | chr3_4:4179433-4179452 | Msa0486280:intron | 45.0% | |
| AAGCAAAACGTCATCGTTCC+AGG | - | chr3_4:4179500-4179519 | None:intergenic | 45.0% | |
| GGTTCGAATCAAAATCGCGA+AGG | - | chr3_4:4179651-4179670 | None:intergenic | 45.0% | |
| AATCGCAACAACACCAGAAC+AGG | - | chr3_4:4179672-4179691 | None:intergenic | 45.0% | |
| CTGCATTTCAGTTTACGGCT+TGG | + | chr3_4:4179693-4179712 | Msa0486280:CDS | 45.0% | |
| GCTTGGAATGGATCACTGTT+GGG | + | chr3_4:4179710-4179729 | Msa0486280:CDS | 45.0% | |
| !!! | AATAATTTTATATTAAACTA+AGG | - | chr3_4:4174598-4174617 | None:intergenic | 5.0% |
| !! | ATATAAAATTATTAGTAATT+TGG | + | chr3_4:4174605-4174624 | Msa0486280:intron | 5.0% |
| !! | TATAAAATTATTAGTAATTT+GGG | + | chr3_4:4174606-4174625 | Msa0486280:intron | 5.0% |
| !! | CATTATTAAATAATAAAATA+TGG | - | chr3_4:4175437-4175456 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTAATCTT+TGG | + | chr3_4:4176836-4176855 | Msa0486280:intron | 5.0% |
| !!! | TTTTTTTTTTTTTAATCTTT+GGG | + | chr3_4:4176837-4176856 | Msa0486280:intron | 5.0% |
| AGGGAGGGTCAACAAAGAAG+AGG | + | chr3_4:4174335-4174354 | Msa0486280:intron | 50.0% | |
| GCTTGCTCAGTCGTGTTGAA+AGG | + | chr3_4:4174786-4174805 | Msa0486280:intron | 50.0% | |
| GTTAGCGTGTGCATCTGAAG+AGG | - | chr3_4:4175026-4175045 | None:intergenic | 50.0% | |
| AGGGGTCAGGGATGATGTAA+GGG | - | chr3_4:4175399-4175418 | None:intergenic | 50.0% | |
| AAGGGGTCAGGGATGATGTA+AGG | - | chr3_4:4175400-4175419 | None:intergenic | 50.0% | |
| TGAAGTGTAGGAAGGGGTCA+GGG | - | chr3_4:4175411-4175430 | None:intergenic | 50.0% | |
| TGGAGCTGAAGTGTAGGAAG+GGG | - | chr3_4:4175417-4175436 | None:intergenic | 50.0% | |
| !! | TACTTGATGGTGTCGTGCGA+TGG | + | chr3_4:4176318-4176337 | Msa0486280:CDS | 50.0% |
| TGAGAGCGGCAGTAAGTGTT+TGG | + | chr3_4:4176355-4176374 | Msa0486280:intron | 50.0% | |
| GGTCTGAGCTAACTACCATG+AGG | + | chr3_4:4176591-4176610 | Msa0486280:intron | 50.0% | |
| CTGAGCTAACTACCATGAGG+TGG | + | chr3_4:4176594-4176613 | Msa0486280:intron | 50.0% | |
| GAGCTAACTACCATGAGGTG+GGG | + | chr3_4:4176596-4176615 | Msa0486280:intron | 50.0% | |
| TAACTACCATGAGGTGGGGA+TGG | + | chr3_4:4176600-4176619 | Msa0486280:intron | 50.0% | |
| ! | ACAGCATGCCACCGATTAGT+TGG | + | chr3_4:4176780-4176799 | Msa0486280:intron | 50.0% |
| ACAGATCTGGCACTGCAGTA+AGG | + | chr3_4:4177400-4177419 | Msa0486280:intron | 50.0% | |
| GGCACTGCAGTAAGGATTTG+TGG | + | chr3_4:4177408-4177427 | Msa0486280:intron | 50.0% | |
| GTCCCACCCGATGTAACTAA+AGG | - | chr3_4:4177655-4177674 | None:intergenic | 50.0% | |
| AGTGAGGTGTGTGCATGTGT+CGG | + | chr3_4:4177772-4177791 | Msa0486280:intron | 50.0% | |
| AACGGGTAGGGTTATGGATC+GGG | + | chr3_4:4178860-4178879 | Msa0486280:intron | 50.0% | |
| TTATGGATCGGGCTTCACGT+GGG | + | chr3_4:4178871-4178890 | Msa0486280:intron | 50.0% | |
| ! | TTCACGTGGGTTATGGGTCA+GGG | + | chr3_4:4178884-4178903 | Msa0486280:intron | 50.0% |
| AGACTTCACCCAACTGACCT+GGG | - | chr3_4:4178914-4178933 | None:intergenic | 50.0% | |
| TAGACTTCACCCAACTGACC+TGG | - | chr3_4:4178915-4178934 | None:intergenic | 50.0% | |
| ! | TTGCATCCTCCCTTGACTTG+TGG | - | chr3_4:4179382-4179401 | None:intergenic | 50.0% |
| TCAAAATCGCGAAGGCTCGA+CGG | - | chr3_4:4179643-4179662 | None:intergenic | 50.0% | |
| GGCTTGGAATGGATCACTGT+TGG | + | chr3_4:4179709-4179728 | Msa0486280:CDS | 50.0% | |
| CTGAAGTGTAGGAAGGGGTC+AGG | - | chr3_4:4175412-4175431 | None:intergenic | 55.0% | |
| !! | TTGATGGTGTCGTGCGATGG+AGG | + | chr3_4:4176321-4176340 | Msa0486280:CDS | 55.0% |
| TTCACACCATCCCCACCTCA+TGG | - | chr3_4:4176609-4176628 | None:intergenic | 55.0% | |
| ATGAGGTGGGGATGGTGTGA+AGG | + | chr3_4:4176608-4176627 | Msa0486280:intron | 55.0% | |
| CATCCTTGAGAGACGAGGTG+CGG | + | chr3_4:4176702-4176721 | Msa0486280:intron | 55.0% | |
| TATCCGCACCTCGTCTCTCA+AGG | - | chr3_4:4176708-4176727 | None:intergenic | 55.0% | |
| CTGTGGTTATCTGCCCGATG+TGG | + | chr3_4:4177569-4177588 | Msa0486280:intron | 55.0% | |
| ! | GCATGTGTCGGTGCTTGTGT+CGG | + | chr3_4:4177784-4177803 | Msa0486280:intron | 55.0% |
| GTTATGGATCGGGCTTCACG+TGG | + | chr3_4:4178870-4178889 | Msa0486280:intron | 55.0% | |
| ! | ATCGGGCTTCACGTGGGTTA+TGG | + | chr3_4:4178877-4178896 | Msa0486280:intron | 55.0% |
| ! | TCGGGCTTCACGTGGGTTAT+GGG | + | chr3_4:4178878-4178897 | Msa0486280:intron | 55.0% |
| ! | CTTCACGTGGGTTATGGGTC+AGG | + | chr3_4:4178883-4178902 | Msa0486280:intron | 55.0% |
| TTATGGGTCAGGGAGAACCC+AGG | + | chr3_4:4178894-4178913 | Msa0486280:intron | 55.0% | |
| AGGGAGAACCCAGGTCAGTT+GGG | + | chr3_4:4178903-4178922 | Msa0486280:intron | 55.0% | |
| CGCAAACCACAAGTCAAGGG+AGG | + | chr3_4:4179373-4179392 | Msa0486280:intron | 55.0% | |
| ACGCGAAGAAGGAAGAGGAG+TGG | - | chr3_4:4179523-4179542 | None:intergenic | 55.0% | |
| CGGAAACGCGAAGAAGGAAG+AGG | - | chr3_4:4179528-4179547 | None:intergenic | 55.0% | |
| AGCGAACGGAAACGCGAAGA+AGG | - | chr3_4:4179534-4179553 | None:intergenic | 55.0% | |
| CGATGGCGAGATATGTGCGG+TGG | - | chr3_4:4174895-4174914 | None:intergenic | 60.0% | |
| GCGTGTGCATCTGAAGAGGG+AGG | - | chr3_4:4175022-4175041 | None:intergenic | 60.0% | |
| CAGGGAGAACCCAGGTCAGT+TGG | + | chr3_4:4178902-4178921 | Msa0486280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 4174016 | 4179754 | 4174016 | ID=Msa0486280;Name=Msa0486280 |
| chr3_4 | mRNA | 4174016 | 4179754 | 4174016 | ID=Msa0486280-mRNA-1;Parent=Msa0486280;Name=Msa0486280-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.5|0.33|0.5|4|0|106 |
| chr3_4 | exon | 4174016 | 4174019 | 4174016 | ID=Msa0486280-mRNA-1:exon:1585;Parent=Msa0486280-mRNA-1 |
| chr3_4 | exon | 4176298 | 4176369 | 4176298 | ID=Msa0486280-mRNA-1:exon:1586;Parent=Msa0486280-mRNA-1 |
| chr3_4 | exon | 4177027 | 4177124 | 4177027 | ID=Msa0486280-mRNA-1:exon:1587;Parent=Msa0486280-mRNA-1 |
| chr3_4 | exon | 4179611 | 4179754 | 4179611 | ID=Msa0486280-mRNA-1:exon:1588;Parent=Msa0486280-mRNA-1 |
| chr3_4 | CDS | 4174016 | 4174019 | 4174016 | ID=Msa0486280-mRNA-1:cds;Parent=Msa0486280-mRNA-1 |
| chr3_4 | CDS | 4176298 | 4176369 | 4176298 | ID=Msa0486280-mRNA-1:cds;Parent=Msa0486280-mRNA-1 |
| chr3_4 | CDS | 4177027 | 4177124 | 4177027 | ID=Msa0486280-mRNA-1:cds;Parent=Msa0486280-mRNA-1 |
| chr3_4 | CDS | 4179611 | 4179754 | 4179611 | ID=Msa0486280-mRNA-1:cds;Parent=Msa0486280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
