Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813400 | XP_039689544.1 | 46.691 | 272 | 138 | 2 | 4 | 273 | 21 | 287 | 8.70e-78 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813400 | A0A396I0Y9 | 46.182 | 275 | 141 | 2 | 1 | 273 | 47 | 316 | 1.29e-77 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0813400 | 0.803355 | 3.627324e-49 | -8.615850e-47 |
| Msa0011170 | Msa0813400 | 0.824439 | 8.066096e-54 | -8.615850e-47 |
| Msa0014710 | Msa0813400 | 0.815305 | 9.896157e-52 | -8.615850e-47 |
| Msa0016570 | Msa0813400 | 0.804928 | 1.706901e-49 | -8.615850e-47 |
| Msa0016580 | Msa0813400 | 0.806542 | 7.821367e-50 | -8.615850e-47 |
| Msa0017070 | Msa0813400 | 0.811389 | 7.175334e-51 | -8.615850e-47 |
| Msa0039330 | Msa0813400 | 0.818979 | 1.477071e-52 | -8.615850e-47 |
| Msa0042920 | Msa0813400 | 0.801384 | 9.235256e-49 | -8.615850e-47 |
| Msa0048100 | Msa0813400 | 0.802755 | 4.826402e-49 | -8.615850e-47 |
| Msa0054480 | Msa0813400 | 0.806818 | 6.837428e-50 | -8.615850e-47 |
| Msa0064970 | Msa0813400 | 0.802371 | 5.792502e-49 | -8.615850e-47 |
| Msa0075880 | Msa0813400 | 0.806842 | 6.759320e-50 | -8.615850e-47 |
| Msa0083770 | Msa0813400 | 0.883249 | 5.265734e-71 | -8.615850e-47 |
| Msa0084380 | Msa0813400 | 0.804200 | 2.421826e-49 | -8.615850e-47 |
| Msa0091210 | Msa0813400 | -0.811636 | 6.341509e-51 | -8.615850e-47 |
| Msa0095560 | Msa0813400 | 0.808868 | 2.507211e-50 | -8.615850e-47 |
| Msa0110270 | Msa0813400 | 0.816880 | 4.401152e-52 | -8.615850e-47 |
| Msa0114060 | Msa0813400 | 0.808454 | 3.072478e-50 | -8.615850e-47 |
| Msa0117710 | Msa0813400 | 0.801751 | 7.766620e-49 | -8.615850e-47 |
| Msa0612930 | Msa0813400 | 0.811036 | 8.557097e-51 | -8.615850e-47 |
| Msa0617640 | Msa0813400 | 0.809193 | 2.136012e-50 | -8.615850e-47 |
| Msa0620960 | Msa0813400 | 0.826574 | 2.517458e-54 | -8.615850e-47 |
| Msa0652940 | Msa0813400 | 0.822988 | 1.764410e-53 | -8.615850e-47 |
| Msa0657970 | Msa0813400 | 0.820153 | 7.970673e-53 | -8.615850e-47 |
| Msa0663240 | Msa0813400 | 0.804194 | 2.428731e-49 | -8.615850e-47 |
| Msa0672690 | Msa0813400 | 0.830701 | 2.532776e-55 | -8.615850e-47 |
| Msa0673460 | Msa0813400 | 0.816820 | 4.540792e-52 | -8.615850e-47 |
| Msa0676080 | Msa0813400 | 0.806230 | 9.098482e-50 | -8.615850e-47 |
| Msa0681270 | Msa0813400 | 0.806951 | 6.409079e-50 | -8.615850e-47 |
| Msa0688270 | Msa0813400 | 0.801277 | 9.714642e-49 | -8.615850e-47 |
| Msa0688480 | Msa0813400 | 0.807862 | 4.109047e-50 | -8.615850e-47 |
| Msa0690440 | Msa0813400 | 0.801485 | 8.804615e-49 | -8.615850e-47 |
| Msa0691380 | Msa0813400 | 0.804999 | 1.649537e-49 | -8.615850e-47 |
| Msa0693380 | Msa0813400 | 0.808375 | 3.193698e-50 | -8.615850e-47 |
| Msa0697060 | Msa0813400 | 0.805096 | 1.574036e-49 | -8.615850e-47 |
| Msa0716530 | Msa0813400 | 0.814880 | 1.230000e-51 | -8.615850e-47 |
| Msa0724210 | Msa0813400 | 0.821968 | 3.044244e-53 | -8.615850e-47 |
| Msa0731940 | Msa0813400 | 0.821036 | 4.998197e-53 | -8.615850e-47 |
| Msa0745790 | Msa0813400 | 0.807698 | 4.451044e-50 | -8.615850e-47 |
| Msa0759410 | Msa0813400 | 0.803122 | 4.053735e-49 | -8.615850e-47 |
| Msa0760130 | Msa0813400 | 0.815751 | 7.873549e-52 | -8.615850e-47 |
| Msa0764720 | Msa0813400 | 0.807114 | 5.918964e-50 | -8.615850e-47 |
| Msa0766630 | Msa0813400 | 0.826481 | 2.649796e-54 | -8.615850e-47 |
| Msa0773840 | Msa0813400 | 0.801110 | 1.050694e-48 | -8.615850e-47 |
| Msa0789250 | Msa0813400 | 0.800393 | 1.472128e-48 | -8.615850e-47 |
| Msa0790510 | Msa0813400 | 0.812296 | 4.552924e-51 | -8.615850e-47 |
| Msa0792540 | Msa0813400 | 0.808037 | 3.770689e-50 | -8.615850e-47 |
| Msa0796700 | Msa0813400 | 0.814385 | 1.582911e-51 | -8.615850e-47 |
| Msa0802830 | Msa0813400 | 0.817100 | 3.929078e-52 | -8.615850e-47 |
| Msa0804230 | Msa0813400 | 0.802435 | 5.616787e-49 | -8.615850e-47 |
| Msa0807030 | Msa0813400 | 0.810786 | 9.693927e-51 | -8.615850e-47 |
| Msa0813400 | Msa0820850 | 0.836545 | 8.787287e-57 | -8.615850e-47 |
| Msa0813400 | Msa0827780 | 0.801562 | 8.490696e-49 | -8.615850e-47 |
| Msa0813400 | Msa0861130 | 0.839029 | 2.022512e-57 | -8.615850e-47 |
| Msa0813400 | Msa0864470 | -0.814687 | 1.357366e-51 | -8.615850e-47 |
| Msa0813400 | Msa0882690 | 0.809340 | 1.985991e-50 | -8.615850e-47 |
| Msa0813400 | Msa0894720 | 0.801255 | 9.815015e-49 | -8.615850e-47 |
| Msa0813400 | Msa0897880 | 0.802984 | 4.328494e-49 | -8.615850e-47 |
| Msa0813400 | Msa0907690 | 0.803799 | 2.934484e-49 | -8.615850e-47 |
| Msa0813400 | Msa0927290 | 0.819747 | 9.875208e-53 | -8.615850e-47 |
| Msa0813400 | Msa0931520 | 0.816521 | 5.298745e-52 | -8.615850e-47 |
| Msa0813400 | Msa0942200 | 0.803179 | 3.944758e-49 | -8.615850e-47 |
| Msa0813400 | Msa0954910 | 0.818186 | 2.235805e-52 | -8.615850e-47 |
| Msa0813400 | Msa0972630 | 0.812643 | 3.824567e-51 | -8.615850e-47 |
| Msa0813400 | Msa0976670 | 0.817366 | 3.423203e-52 | -8.615850e-47 |
| Msa0813400 | Msa0989360 | 0.800854 | 1.185415e-48 | -8.615850e-47 |
| Msa0813400 | Msa1000900 | 0.807142 | 5.839740e-50 | -8.615850e-47 |
| Msa0813400 | Msa1003620 | 0.800040 | 1.736982e-48 | -8.615850e-47 |
| Msa0813400 | Msa1014540 | 0.840062 | 1.089907e-57 | -8.615850e-47 |
| Msa0813400 | Msa1028970 | 0.828384 | 9.262644e-55 | -8.615850e-47 |
| Msa0813400 | Msa1034300 | 0.812170 | 4.850974e-51 | -8.615850e-47 |
| Msa0813400 | Msa1059570 | 0.824285 | 8.767566e-54 | -8.615850e-47 |
| Msa0813400 | Msa1071110 | 0.807389 | 5.177518e-50 | -8.615850e-47 |
| Msa0813400 | Msa1075220 | -0.816409 | 5.612608e-52 | -8.615850e-47 |
| Msa0813400 | Msa1075650 | 0.840555 | 8.105281e-58 | -8.615850e-47 |
| Msa0813400 | Msa1081590 | 0.819942 | 8.908006e-53 | -8.615850e-47 |
| Msa0813400 | Msa1082500 | 0.860901 | 1.494868e-63 | -8.615850e-47 |
| Msa0813400 | Msa1104090 | 0.809090 | 2.246356e-50 | -8.615850e-47 |
| Msa0813400 | Msa1114030 | 0.814870 | 1.236315e-51 | -8.615850e-47 |
| Msa0813400 | Msa1116260 | 0.826455 | 2.688291e-54 | -8.615850e-47 |
| Msa0813400 | Msa1117170 | 0.817301 | 3.540393e-52 | -8.615850e-47 |
| Msa0813400 | Msa1121450 | -0.807056 | 6.089525e-50 | -8.615850e-47 |
| Msa0813400 | Msa1121490 | 0.811882 | 5.605735e-51 | -8.615850e-47 |
| Msa0813400 | Msa1137850 | 0.801909 | 7.207347e-49 | -8.615850e-47 |
| Msa0813400 | Msa1139000 | -0.802184 | 6.327087e-49 | -8.615850e-47 |
| Msa0813400 | Msa1144720 | -0.806284 | 8.863874e-50 | -8.615850e-47 |
| Msa0813400 | Msa1148020 | 0.807589 | 4.696185e-50 | -8.615850e-47 |
| Msa0813400 | Msa1154280 | 0.803711 | 3.059237e-49 | -8.615850e-47 |
| Msa0813400 | Msa1162550 | -0.817030 | 4.073861e-52 | -8.615850e-47 |
| Msa0813400 | Msa1172400 | 0.807675 | 4.500713e-50 | -8.615850e-47 |
| Msa0813400 | Msa1174040 | 0.820801 | 5.659852e-53 | -8.615850e-47 |
| Msa0813400 | Msa1181250 | 0.802952 | 4.393564e-49 | -8.615850e-47 |
| Msa0813400 | Msa1187950 | 0.804820 | 1.797922e-49 | -8.615850e-47 |
| Msa0813400 | Msa1195190 | 0.816605 | 5.073827e-52 | -8.615850e-47 |
| Msa0813400 | Msa1228590 | 0.803164 | 3.973326e-49 | -8.615850e-47 |
| Msa0813400 | Msa1233890 | 0.855762 | 5.076487e-62 | -8.615850e-47 |
| Msa0813400 | Msa1238770 | 0.812392 | 4.338737e-51 | -8.615850e-47 |
| Msa0813400 | Msa1242220 | 0.803195 | 3.914561e-49 | -8.615850e-47 |
| Msa0813400 | Msa1246510 | 0.817142 | 3.843998e-52 | -8.615850e-47 |
| Msa0813400 | Msa1249490 | 0.831100 | 2.020870e-55 | -8.615850e-47 |
| Msa0813400 | Msa1277660 | 0.812234 | 4.697507e-51 | -8.615850e-47 |
| Msa0813400 | Msa1282580 | -0.812832 | 3.476854e-51 | -8.615850e-47 |
| Msa0813400 | Msa1283860 | 0.801020 | 1.096650e-48 | -8.615850e-47 |
| Msa0813400 | Msa1284680 | 0.836611 | 8.454648e-57 | -8.615850e-47 |
| Msa0813400 | Msa1288420 | 0.808910 | 2.455236e-50 | -8.615850e-47 |
| Msa0813400 | Msa1291660 | 0.841143 | 5.680262e-58 | -8.615850e-47 |
| Msa0813400 | Msa1296760 | 0.802491 | 5.469976e-49 | -8.615850e-47 |
| Msa0813400 | Msa1305340 | 0.805888 | 1.074030e-49 | -8.615850e-47 |
| Msa0813400 | Msa1322890 | 0.805460 | 1.320633e-49 | -8.615850e-47 |
| Msa0813400 | Msa1331000 | 0.814886 | 1.225834e-51 | -8.615850e-47 |
| Msa0813400 | Msa1342840 | 0.800870 | 1.176684e-48 | -8.615850e-47 |
| Msa0813400 | Msa1359040 | 0.813262 | 2.797255e-51 | -8.615850e-47 |
| Msa0813400 | Msa1366810 | 0.809224 | 2.103131e-50 | -8.615850e-47 |
| Msa0813400 | Msa1372760 | 0.826296 | 2.931686e-54 | -8.615850e-47 |
| Msa0813400 | Msa1373030 | 0.831088 | 2.035277e-55 | -8.615850e-47 |
| Msa0813400 | Msa1390050 | 0.800066 | 1.715738e-48 | -8.615850e-47 |
| Msa0813400 | Msa1392260 | 0.801287 | 9.667125e-49 | -8.615850e-47 |
| Msa0813400 | Msa1403480 | 0.803279 | 3.759991e-49 | -8.615850e-47 |
| Msa0813400 | Msa1411020 | 0.829202 | 5.874967e-55 | -8.615850e-47 |
| Msa0813400 | Msa1419960 | 0.819923 | 9.000394e-53 | -8.615850e-47 |
| Msa0813400 | Msa1420290 | 0.804365 | 2.237067e-49 | -8.615850e-47 |
| Msa0813400 | Msa1420490 | 0.819078 | 1.402928e-52 | -8.615850e-47 |
| Msa0813400 | Msa1420820 | 0.802009 | 6.875292e-49 | -8.615850e-47 |
| Msa0813400 | Msa1423390 | 0.815020 | 1.144609e-51 | -8.615850e-47 |
| Msa0813400 | Msa1424290 | 0.829538 | 4.868083e-55 | -8.615850e-47 |
| Msa0813400 | Msa1426470 | 0.805486 | 1.304512e-49 | -8.615850e-47 |
| Msa0813400 | Msa1427230 | 0.846908 | 1.615668e-59 | -8.615850e-47 |
| Msa0813400 | Msa1430680 | 0.805106 | 1.566676e-49 | -8.615850e-47 |
| Msa0813400 | Msa1434350 | 0.828316 | 9.618007e-55 | -8.615850e-47 |
| Msa0813400 | Msa1439320 | 0.829272 | 5.648280e-55 | -8.615850e-47 |
| Msa0813400 | Msa1440370 | 0.817728 | 2.837474e-52 | -8.615850e-47 |
| Msa0813400 | Msa1440810 | 0.820767 | 5.764339e-53 | -8.615850e-47 |
| Msa0813400 | Msa1451620 | -0.830136 | 3.480909e-55 | -8.615850e-47 |
| Msa0813400 | Msa1453560 | 0.810396 | 1.177086e-50 | -8.615850e-47 |
| Msa0813400 | Msa1460050 | 0.817483 | 3.221508e-52 | -8.615850e-47 |
| Msa0813400 | Msa1460830 | 0.848766 | 4.970878e-60 | -8.615850e-47 |
| Msa0813400 | Msa1466540 | 0.831727 | 1.416542e-55 | -8.615850e-47 |
| Msa0142220 | Msa0813400 | 0.824944 | 6.133752e-54 | -8.615850e-47 |
| Msa0178930 | Msa0813400 | 0.827782 | 1.293780e-54 | -8.615850e-47 |
| Msa0188460 | Msa0813400 | 0.800165 | 1.638043e-48 | -8.615850e-47 |
| Msa0188830 | Msa0813400 | 0.813692 | 2.251082e-51 | -8.615850e-47 |
| Msa0201070 | Msa0813400 | 0.804421 | 2.177950e-49 | -8.615850e-47 |
| Msa0205510 | Msa0813400 | 0.801333 | 9.462582e-49 | -8.615850e-47 |
| Msa0210450 | Msa0813400 | 0.807775 | 4.286608e-50 | -8.615850e-47 |
| Msa0214300 | Msa0813400 | 0.811653 | 6.287011e-51 | -8.615850e-47 |
| Msa0220580 | Msa0813400 | 0.830608 | 2.669175e-55 | -8.615850e-47 |
| Msa0223010 | Msa0813400 | 0.833261 | 5.901903e-56 | -8.615850e-47 |
| Msa0223410 | Msa0813400 | -0.801243 | 9.869003e-49 | -8.615850e-47 |
| Msa0233300 | Msa0813400 | 0.829002 | 6.567042e-55 | -8.615850e-47 |
| Msa0379640 | Msa0813400 | 0.811490 | 6.822845e-51 | -8.615850e-47 |
| Msa0381620 | Msa0813400 | -0.803128 | 4.041484e-49 | -8.615850e-47 |
| Msa0384890 | Msa0813400 | 0.815187 | 1.050937e-51 | -8.615850e-47 |
| Msa0392040 | Msa0813400 | -0.824981 | 6.012035e-54 | -8.615850e-47 |
| Msa0397750 | Msa0813400 | 0.810615 | 1.055636e-50 | -8.615850e-47 |
| Msa0411390 | Msa0813400 | 0.811591 | 6.485758e-51 | -8.615850e-47 |
| Msa0432300 | Msa0813400 | 0.803871 | 2.834328e-49 | -8.615850e-47 |
| Msa0433410 | Msa0813400 | -0.806313 | 8.739032e-50 | -8.615850e-47 |
| Msa0435230 | Msa0813400 | 0.808389 | 3.172280e-50 | -8.615850e-47 |
| Msa0443260 | Msa0813400 | 0.817113 | 3.902444e-52 | -8.615850e-47 |
| Msa0444130 | Msa0813400 | 0.800680 | 1.286277e-48 | -8.615850e-47 |
| Msa0453640 | Msa0813400 | 0.811731 | 6.045854e-51 | -8.615850e-47 |
| Msa0469940 | Msa0813400 | -0.826296 | 2.931686e-54 | -8.615850e-47 |
| Msa0477130 | Msa0813400 | -0.811198 | 7.891144e-51 | -8.615850e-47 |
| Msa0479340 | Msa0813400 | 0.826402 | 2.766695e-54 | -8.615850e-47 |
| Msa0266720 | Msa0813400 | 0.819284 | 1.258825e-52 | -8.615850e-47 |
| Msa0270520 | Msa0813400 | 0.825910 | 3.622798e-54 | -8.615850e-47 |
| Msa0278190 | Msa0813400 | 0.822536 | 2.248366e-53 | -8.615850e-47 |
| Msa0280090 | Msa0813400 | 0.813252 | 2.812072e-51 | -8.615850e-47 |
| Msa0285450 | Msa0813400 | 0.805924 | 1.055409e-49 | -8.615850e-47 |
| Msa0288100 | Msa0813400 | 0.818215 | 2.202401e-52 | -8.615850e-47 |
| Msa0305190 | Msa0813400 | 0.833895 | 4.099242e-56 | -8.615850e-47 |
| Msa0306210 | Msa0813400 | -0.806053 | 9.915365e-50 | -8.615850e-47 |
| Msa0309770 | Msa0813400 | 0.810498 | 1.118702e-50 | -8.615850e-47 |
| Msa0339620 | Msa0813400 | 0.836087 | 1.149370e-56 | -8.615850e-47 |
| Msa0340450 | Msa0813400 | 0.801575 | 8.439442e-49 | -8.615850e-47 |
| Msa0342750 | Msa0813400 | 0.802973 | 4.351538e-49 | -8.615850e-47 |
| Msa0344690 | Msa0813400 | -0.812562 | 3.983101e-51 | -8.615850e-47 |
| Msa0345970 | Msa0813400 | 0.803112 | 4.072300e-49 | -8.615850e-47 |
| Msa0484780 | Msa0813400 | 0.834282 | 3.279432e-56 | -8.615850e-47 |
| Msa0485780 | Msa0813400 | 0.913025 | 9.920814e-84 | -8.615850e-47 |
| Msa0486280 | Msa0813400 | 0.802126 | 6.505679e-49 | -8.615850e-47 |
| Msa0512900 | Msa0813400 | 0.804770 | 1.841393e-49 | -8.615850e-47 |
| Msa0518380 | Msa0813400 | 0.811492 | 6.813779e-51 | -8.615850e-47 |
| Msa0532350 | Msa0813400 | 0.822242 | 2.630865e-53 | -8.615850e-47 |
| Msa0541130 | Msa0813400 | 0.803718 | 3.050340e-49 | -8.615850e-47 |
| Msa0562440 | Msa0813400 | 0.809926 | 1.486449e-50 | -8.615850e-47 |
| Msa0585230 | Msa0813400 | 0.820932 | 5.282572e-53 | -8.615850e-47 |
| Msa0599890 | Msa0813400 | 0.808482 | 3.030349e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813400 | MtrunA17_Chr4g0002051 | 46.182 | 275 | 141 | 2 | 1 | 273 | 47 | 316 | 2.49e-81 | 248 |
| Msa0813400 | MtrunA17_Chr8g0381471 | 48.256 | 172 | 87 | 1 | 104 | 273 | 1 | 172 | 2.67e-51 | 166 |
| Msa0813400 | MtrunA17_Chr2g0287671 | 30.662 | 287 | 152 | 12 | 1 | 252 | 134 | 408 | 2.01e-29 | 115 |
| Msa0813400 | MtrunA17_Chr8g0361701 | 33.813 | 139 | 84 | 3 | 93 | 230 | 111 | 242 | 4.05e-20 | 87.0 |
| Msa0813400 | MtrunA17_Chr8g0349191 | 31.818 | 110 | 72 | 2 | 175 | 281 | 1 | 110 | 1.59e-11 | 60.5 |
| Msa0813400 | MtrunA17_Chr3g0086461 | 21.983 | 232 | 161 | 7 | 61 | 283 | 44 | 264 | 2.99e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGCCATTTACATATT+TGG | 0.165632 | 5_3:-44168105 | Msa0813400:CDS |
| CCTTGACGTCCCAAACCTTT+TGG | 0.174160 | 5_3:+44167120 | None:intergenic |
| TCATCGCTGCTTCTAATTAT+TGG | 0.189813 | 5_3:-44167960 | Msa0813400:CDS |
| AACTGTTTCATTTGCCAAAA+TGG | 0.193914 | 5_3:+44167580 | None:intergenic |
| CATAAGCAAGATTTCATTAA+AGG | 0.220107 | 5_3:-44166762 | Msa0813400:CDS |
| TTTAATTCCATTCTTCTCTT+TGG | 0.242193 | 5_3:+44168141 | None:intergenic |
| TTTGATGTTGGCAAAGTCTT+TGG | 0.263575 | 5_3:-44166787 | Msa0813400:CDS |
| AAACGAAGAAGAGTGTAATT+TGG | 0.264894 | 5_3:-44168121 | Msa0813400:CDS |
| TGTCGTGGAATTCACCATTT+TGG | 0.264921 | 5_3:-44167594 | Msa0813400:CDS |
| GTTGTTTCAGGCTATGTTTA+TGG | 0.272519 | 5_3:-44167223 | Msa0813400:intron |
| CATCGCTGCTTCTAATTATT+GGG | 0.286684 | 5_3:-44167959 | Msa0813400:CDS |
| TTTGTTTCAGGTAATAGATT+TGG | 0.306393 | 5_3:-44167783 | Msa0813400:intron |
| TAGGAATGATTGTGCGGTTT+GGG | 0.307093 | 5_3:-44167014 | Msa0813400:CDS |
| TGGACATCCAAATATGTAAA+TGG | 0.307101 | 5_3:+44168098 | None:intergenic |
| AACTTGTCAATTTGTTCATT+AGG | 0.326376 | 5_3:+44168075 | None:intergenic |
| AATAGTCACCCCAAAAGGTT+TGG | 0.336042 | 5_3:-44167130 | Msa0813400:CDS |
| TCATCTACACTGGTTCCTTT+TGG | 0.345121 | 5_3:-44167412 | Msa0813400:CDS |
| GTGCGGTTTGGGTAATTAAC+TGG | 0.355704 | 5_3:-44167003 | Msa0813400:CDS |
| GTTTCTGCCAACAACTTTAA+CGG | 0.369175 | 5_3:-44167705 | Msa0813400:intron |
| GTTTATGGAGGAGTTCTTGA+TGG | 0.373775 | 5_3:-44167208 | Msa0813400:CDS |
| AAATTTACCGTTAAAGTTGT+TGG | 0.410827 | 5_3:+44167698 | None:intergenic |
| TTAGGAATGATTGTGCGGTT+TGG | 0.432957 | 5_3:-44167015 | Msa0813400:intron |
| AAACCCAACAAATTCGTTAC+GGG | 0.437895 | 5_3:-44167901 | Msa0813400:CDS |
| CAGTGTAGATGATCATATAT+TGG | 0.446763 | 5_3:+44167423 | None:intergenic |
| TTTAAAATAGTCACCCCAAA+AGG | 0.463204 | 5_3:-44167135 | Msa0813400:CDS |
| CATACCACTATTGATGTCTT+CGG | 0.465824 | 5_3:-44168248 | None:intergenic |
| ATCTCCCGTAACGAATTTGT+TGG | 0.479707 | 5_3:+44167897 | None:intergenic |
| CAATGTTCGTCGGTGCTTCA+CGG | 0.484614 | 5_3:-44167345 | Msa0813400:CDS |
| TCTCCCGTAACGAATTTGTT+GGG | 0.488863 | 5_3:+44167898 | None:intergenic |
| TTGATGGATCCATCTTTCCA+TGG | 0.492954 | 5_3:-44167192 | Msa0813400:CDS |
| GAAACCCAACAAATTCGTTA+CGG | 0.493062 | 5_3:-44167902 | Msa0813400:CDS |
| ATAGTCACCCCAAAAGGTTT+GGG | 0.495339 | 5_3:-44167129 | Msa0813400:CDS |
| CGTGAAGCACCGACGAACAT+TGG | 0.500357 | 5_3:+44167346 | None:intergenic |
| AAATGCGTCAACCTAAAACT+TGG | 0.506791 | 5_3:-44167727 | Msa0813400:CDS |
| GCTAACTTACGATGCAAGAA+AGG | 0.510769 | 5_3:-44167750 | Msa0813400:CDS |
| AAATCTCTCTTGTCGTTGAA+AGG | 0.515792 | 5_3:+44166807 | None:intergenic |
| GGTTTGGGACGTCAAGGGGA+TGG | 0.517176 | 5_3:-44167114 | Msa0813400:CDS |
| GTTTCAACCAAAGAGAAGAA+TGG | 0.517611 | 5_3:-44168148 | Msa0813400:CDS |
| GAATCAGTGCCATGGAAAGA+TGG | 0.518164 | 5_3:+44167183 | None:intergenic |
| TCACAAAGTCAATAACCAAA+AGG | 0.520836 | 5_3:+44167397 | None:intergenic |
| ATGATGCAACGTGGAGAGAA+TGG | 0.542299 | 5_3:-44166980 | Msa0813400:CDS |
| GTTTCAGGCTATGTTTATGG+AGG | 0.543768 | 5_3:-44167220 | Msa0813400:intron |
| TTGTCAATTTGTTCATTAGG+TGG | 0.544273 | 5_3:+44168078 | None:intergenic |
| CCAAAAGGTTTGGGACGTCA+AGG | 0.551652 | 5_3:-44167120 | Msa0813400:CDS |
| CAAAAGGTTTGGGACGTCAA+GGG | 0.561039 | 5_3:-44167119 | Msa0813400:CDS |
| GTTCGTCGGTGCTTCACGGA+AGG | 0.563242 | 5_3:-44167341 | Msa0813400:CDS |
| AAAAGGTTTGGGACGTCAAG+GGG | 0.574712 | 5_3:-44167118 | Msa0813400:CDS |
| CATTAAAGGATATGATTCAG+AGG | 0.576591 | 5_3:-44166748 | Msa0813400:CDS |
| TTTAGCGATATGTGCTGTCG+TGG | 0.583539 | 5_3:-44167609 | Msa0813400:intron |
| CGACAAGAGAGATTTGATGT+TGG | 0.587936 | 5_3:-44166799 | Msa0813400:CDS |
| CATAGTTTGAATCAGTGCCA+TGG | 0.596462 | 5_3:+44167175 | None:intergenic |
| ATTTATGGGAAATGCTGATG+TGG | 0.609698 | 5_3:-44167545 | Msa0813400:CDS |
| AAATGCTGATGTGGTTTCAA+AGG | 0.609916 | 5_3:-44167536 | Msa0813400:intron |
| CAATATATGATCATCTACAC+TGG | 0.632704 | 5_3:-44167422 | Msa0813400:CDS |
| ATTGGGCGCATCATGTAACA+AGG | 0.646529 | 5_3:-44167942 | Msa0813400:CDS |
| TTATGCAAACAGGTGGACGA+AGG | 0.671354 | 5_3:-44166867 | Msa0813400:intron |
| TGACTCGTACCAATGTTCGT+CGG | 0.701813 | 5_3:-44167355 | Msa0813400:CDS |
| ATTAACTGGATGATGCAACG+TGG | 0.737445 | 5_3:-44166989 | Msa0813400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGATTAAATTTTGTTTT+AGG | - | chr5_3:44167942-44167961 | Msa0813400:CDS | 10.0% |
| !!! | TAATGATTAAATTTTGTTTT+AGG | - | chr5_3:44167942-44167961 | Msa0813400:CDS | 10.0% |
| !! | TTGTTAATATCTTTATATAG+TGG | - | chr5_3:44166793-44166812 | Msa0813400:CDS | 15.0% |
| !! | TTGTTAATATCTTTATATAG+TGG | - | chr5_3:44166793-44166812 | Msa0813400:CDS | 15.0% |
| !! | TTCATATTGTTAATTGTTGT+AGG | - | chr5_3:44166985-44167004 | Msa0813400:CDS | 20.0% |
| !! | ACTTATTAAGCTTATTAGTA+TGG | - | chr5_3:44167146-44167165 | Msa0813400:CDS | 20.0% |
| !! | CTTATTAAGCTTATTAGTAT+GGG | - | chr5_3:44167147-44167166 | Msa0813400:CDS | 20.0% |
| !! | TTATTAAGCTTATTAGTATG+GGG | - | chr5_3:44167148-44167167 | Msa0813400:CDS | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | - | chr5_3:44167416-44167435 | Msa0813400:CDS | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | - | chr5_3:44167656-44167675 | Msa0813400:intron | 20.0% |
| !! | TCTAATTAAAGAATACATAG+TGG | + | chr5_3:44167898-44167917 | None:intergenic | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | - | chr5_3:44168058-44168077 | Msa0813400:intron | 20.0% |
| !! | TTCATATTGTTAATTGTTGT+AGG | - | chr5_3:44166985-44167004 | Msa0813400:CDS | 20.0% |
| !! | ACTTATTAAGCTTATTAGTA+TGG | - | chr5_3:44167146-44167165 | Msa0813400:CDS | 20.0% |
| !! | CTTATTAAGCTTATTAGTAT+GGG | - | chr5_3:44167147-44167166 | Msa0813400:CDS | 20.0% |
| !! | TTATTAAGCTTATTAGTATG+GGG | - | chr5_3:44167148-44167167 | Msa0813400:CDS | 20.0% |
| !! | TTCTACCAAAAAGAATTTAT+GGG | - | chr5_3:44167416-44167435 | Msa0813400:CDS | 20.0% |
| !! | GATATCAAGTATCAAAAAAT+TGG | - | chr5_3:44167656-44167675 | Msa0813400:intron | 20.0% |
| !! | TCTAATTAAAGAATACATAG+TGG | + | chr5_3:44167898-44167917 | None:intergenic | 20.0% |
| !!! | TGCAATTTCATTACATTTTA+TGG | - | chr5_3:44168058-44168077 | Msa0813400:intron | 20.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | + | chr5_3:44166837-44166856 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | - | chr5_3:44166870-44166889 | Msa0813400:intron | 25.0% |
| !! | AACTTGTCAATTTGTTCATT+AGG | + | chr5_3:44166903-44166922 | None:intergenic | 25.0% |
| ! | TATTGTTAATTGTTGTAGGA+AGG | - | chr5_3:44166989-44167008 | Msa0813400:CDS | 25.0% |
| !! | TTTGTTTCAGGTAATAGATT+TGG | - | chr5_3:44167192-44167211 | Msa0813400:CDS | 25.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | + | chr5_3:44167280-44167299 | None:intergenic | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | - | chr5_3:44167415-44167434 | Msa0813400:CDS | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | + | chr5_3:44167424-44167443 | None:intergenic | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | - | chr5_3:44168213-44168232 | Msa0813400:intron | 25.0% |
| ! | TTTAATTCCATTCTTCTCTT+TGG | + | chr5_3:44166837-44166856 | None:intergenic | 25.0% |
| ! | AATTTGGCCATTTACATATT+TGG | - | chr5_3:44166870-44166889 | Msa0813400:intron | 25.0% |
| !! | AACTTGTCAATTTGTTCATT+AGG | + | chr5_3:44166903-44166922 | None:intergenic | 25.0% |
| ! | TATTGTTAATTGTTGTAGGA+AGG | - | chr5_3:44166989-44167008 | Msa0813400:CDS | 25.0% |
| !! | TTTGTTTCAGGTAATAGATT+TGG | - | chr5_3:44167192-44167211 | Msa0813400:CDS | 25.0% |
| ! | AAATTTACCGTTAAAGTTGT+TGG | + | chr5_3:44167280-44167299 | None:intergenic | 25.0% |
| ! | GTTCTACCAAAAAGAATTTA+TGG | - | chr5_3:44167415-44167434 | Msa0813400:CDS | 25.0% |
| !! | CATTTCCCATAAATTCTTTT+TGG | + | chr5_3:44167424-44167443 | None:intergenic | 25.0% |
| ! | CATAAGCAAGATTTCATTAA+AGG | - | chr5_3:44168213-44168232 | Msa0813400:intron | 25.0% |
| ! | AAACGAAGAAGAGTGTAATT+TGG | - | chr5_3:44166854-44166873 | Msa0813400:CDS | 30.0% |
| TGGACATCCAAATATGTAAA+TGG | + | chr5_3:44166880-44166899 | None:intergenic | 30.0% | |
| ! | TTGTCAATTTGTTCATTAGG+TGG | + | chr5_3:44166900-44166919 | None:intergenic | 30.0% |
| ! | TAAGAGATCAACTTTGTTTC+AGG | - | chr5_3:44167180-44167199 | Msa0813400:CDS | 30.0% |
| AACTGTTTCATTTGCCAAAA+TGG | + | chr5_3:44167398-44167417 | None:intergenic | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | + | chr5_3:44167555-44167574 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | - | chr5_3:44167553-44167572 | Msa0813400:CDS | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | + | chr5_3:44167581-44167600 | None:intergenic | 30.0% | |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | - | chr5_3:44167740-44167759 | Msa0813400:CDS | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | - | chr5_3:44167840-44167859 | Msa0813400:intron | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | - | chr5_3:44167955-44167974 | Msa0813400:CDS | 30.0% |
| TTTAGCCAAATTATGCAAAC+AGG | - | chr5_3:44168098-44168117 | Msa0813400:CDS | 30.0% | |
| CATTAAAGGATATGATTCAG+AGG | - | chr5_3:44168227-44168246 | Msa0813400:intron | 30.0% | |
| ! | AAACGAAGAAGAGTGTAATT+TGG | - | chr5_3:44166854-44166873 | Msa0813400:CDS | 30.0% |
| TGGACATCCAAATATGTAAA+TGG | + | chr5_3:44166880-44166899 | None:intergenic | 30.0% | |
| ! | TTGTCAATTTGTTCATTAGG+TGG | + | chr5_3:44166900-44166919 | None:intergenic | 30.0% |
| ! | TAAGAGATCAACTTTGTTTC+AGG | - | chr5_3:44167180-44167199 | Msa0813400:CDS | 30.0% |
| AACTGTTTCATTTGCCAAAA+TGG | + | chr5_3:44167398-44167417 | None:intergenic | 30.0% | |
| CAGTGTAGATGATCATATAT+TGG | + | chr5_3:44167555-44167574 | None:intergenic | 30.0% | |
| CAATATATGATCATCTACAC+TGG | - | chr5_3:44167553-44167572 | Msa0813400:CDS | 30.0% | |
| TCACAAAGTCAATAACCAAA+AGG | + | chr5_3:44167581-44167600 | None:intergenic | 30.0% | |
| !! | CAAATTTCAAGTGTTGTTTC+AGG | - | chr5_3:44167740-44167759 | Msa0813400:CDS | 30.0% |
| ! | TTTAAAATAGTCACCCCAAA+AGG | - | chr5_3:44167840-44167859 | Msa0813400:intron | 30.0% |
| !!! | TTGTTTTAGGAATGATTGTG+CGG | - | chr5_3:44167955-44167974 | Msa0813400:CDS | 30.0% |
| TTTAGCCAAATTATGCAAAC+AGG | - | chr5_3:44168098-44168117 | Msa0813400:CDS | 30.0% | |
| CATTAAAGGATATGATTCAG+AGG | - | chr5_3:44168227-44168246 | Msa0813400:intron | 30.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | - | chr5_3:44166827-44166846 | Msa0813400:CDS | 35.0% | |
| TCATCGCTGCTTCTAATTAT+TGG | - | chr5_3:44167015-44167034 | Msa0813400:intron | 35.0% | |
| CATCGCTGCTTCTAATTATT+GGG | - | chr5_3:44167016-44167035 | Msa0813400:intron | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | - | chr5_3:44167073-44167092 | Msa0813400:intron | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | - | chr5_3:44167074-44167093 | Msa0813400:intron | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | - | chr5_3:44167248-44167267 | Msa0813400:intron | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | - | chr5_3:44167270-44167289 | Msa0813400:intron | 35.0% | |
| TAAACATGAATGAGCGCATA+GGG | + | chr5_3:44167335-44167354 | None:intergenic | 35.0% | |
| TTAAACATGAATGAGCGCAT+AGG | + | chr5_3:44167336-44167355 | None:intergenic | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | + | chr5_3:44167362-44167381 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | - | chr5_3:44167430-44167449 | Msa0813400:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | - | chr5_3:44167439-44167458 | Msa0813400:intron | 35.0% | |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | - | chr5_3:44167752-44167771 | Msa0813400:CDS | 35.0% |
| AAATCTCTCTTGTCGTTGAA+AGG | + | chr5_3:44168171-44168190 | None:intergenic | 35.0% | |
| TTTGATGTTGGCAAAGTCTT+TGG | - | chr5_3:44168188-44168207 | Msa0813400:intron | 35.0% | |
| GTTTCAACCAAAGAGAAGAA+TGG | - | chr5_3:44166827-44166846 | Msa0813400:CDS | 35.0% | |
| TCATCGCTGCTTCTAATTAT+TGG | - | chr5_3:44167015-44167034 | Msa0813400:intron | 35.0% | |
| CATCGCTGCTTCTAATTATT+GGG | - | chr5_3:44167016-44167035 | Msa0813400:intron | 35.0% | |
| GAAACCCAACAAATTCGTTA+CGG | - | chr5_3:44167073-44167092 | Msa0813400:intron | 35.0% | |
| AAACCCAACAAATTCGTTAC+GGG | - | chr5_3:44167074-44167093 | Msa0813400:intron | 35.0% | |
| AAATGCGTCAACCTAAAACT+TGG | - | chr5_3:44167248-44167267 | Msa0813400:intron | 35.0% | |
| GTTTCTGCCAACAACTTTAA+CGG | - | chr5_3:44167270-44167289 | Msa0813400:intron | 35.0% | |
| TAAACATGAATGAGCGCATA+GGG | + | chr5_3:44167335-44167354 | None:intergenic | 35.0% | |
| TTAAACATGAATGAGCGCAT+AGG | + | chr5_3:44167336-44167355 | None:intergenic | 35.0% | |
| AGCACATATCGCTAAATAGA+TGG | + | chr5_3:44167362-44167381 | None:intergenic | 35.0% | |
| ATTTATGGGAAATGCTGATG+TGG | - | chr5_3:44167430-44167449 | Msa0813400:CDS | 35.0% | |
| AAATGCTGATGTGGTTTCAA+AGG | - | chr5_3:44167439-44167458 | Msa0813400:intron | 35.0% | |
| ! | GTTGTTTCAGGCTATGTTTA+TGG | - | chr5_3:44167752-44167771 | Msa0813400:CDS | 35.0% |
| AAATCTCTCTTGTCGTTGAA+AGG | + | chr5_3:44168171-44168190 | None:intergenic | 35.0% | |
| TTTGATGTTGGCAAAGTCTT+TGG | - | chr5_3:44168188-44168207 | Msa0813400:intron | 35.0% | |
| ! | TCTCCCGTAACGAATTTGTT+GGG | + | chr5_3:44167080-44167099 | None:intergenic | 40.0% |
| ATCTCCCGTAACGAATTTGT+TGG | + | chr5_3:44167081-44167100 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | - | chr5_3:44167225-44167244 | Msa0813400:intron | 40.0% | |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | + | chr5_3:44167262-44167281 | None:intergenic | 40.0% |
| AAACATGAATGAGCGCATAG+GGG | + | chr5_3:44167334-44167353 | None:intergenic | 40.0% | |
| ! | TGTCGTGGAATTCACCATTT+TGG | - | chr5_3:44167381-44167400 | Msa0813400:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | - | chr5_3:44167563-44167582 | Msa0813400:CDS | 40.0% |
| GTTTCAGGCTATGTTTATGG+AGG | - | chr5_3:44167755-44167774 | Msa0813400:CDS | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | - | chr5_3:44167767-44167786 | Msa0813400:CDS | 40.0% | |
| ! | TTGATGGATCCATCTTTCCA+TGG | - | chr5_3:44167783-44167802 | Msa0813400:intron | 40.0% |
| CATAGTTTGAATCAGTGCCA+TGG | + | chr5_3:44167803-44167822 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | - | chr5_3:44167845-44167864 | Msa0813400:intron | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | - | chr5_3:44167846-44167865 | Msa0813400:intron | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | - | chr5_3:44167960-44167979 | Msa0813400:CDS | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | - | chr5_3:44167961-44167980 | Msa0813400:CDS | 40.0% | |
| ATTAACTGGATGATGCAACG+TGG | - | chr5_3:44167986-44168005 | Msa0813400:intron | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | - | chr5_3:44168101-44168120 | Msa0813400:CDS | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | + | chr5_3:44168106-44168125 | None:intergenic | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | - | chr5_3:44168176-44168195 | Msa0813400:intron | 40.0% | |
| ! | TCTCCCGTAACGAATTTGTT+GGG | + | chr5_3:44167080-44167099 | None:intergenic | 40.0% |
| ATCTCCCGTAACGAATTTGT+TGG | + | chr5_3:44167081-44167100 | None:intergenic | 40.0% | |
| GCTAACTTACGATGCAAGAA+AGG | - | chr5_3:44167225-44167244 | Msa0813400:intron | 40.0% | |
| ! | GTTGGCAGAAACCAAGTTTT+AGG | + | chr5_3:44167262-44167281 | None:intergenic | 40.0% |
| AAACATGAATGAGCGCATAG+GGG | + | chr5_3:44167334-44167353 | None:intergenic | 40.0% | |
| ! | TGTCGTGGAATTCACCATTT+TGG | - | chr5_3:44167381-44167400 | Msa0813400:CDS | 40.0% |
| !!! | TCATCTACACTGGTTCCTTT+TGG | - | chr5_3:44167563-44167582 | Msa0813400:CDS | 40.0% |
| GTTTCAGGCTATGTTTATGG+AGG | - | chr5_3:44167755-44167774 | Msa0813400:CDS | 40.0% | |
| GTTTATGGAGGAGTTCTTGA+TGG | - | chr5_3:44167767-44167786 | Msa0813400:CDS | 40.0% | |
| ! | TTGATGGATCCATCTTTCCA+TGG | - | chr5_3:44167783-44167802 | Msa0813400:intron | 40.0% |
| CATAGTTTGAATCAGTGCCA+TGG | + | chr5_3:44167803-44167822 | None:intergenic | 40.0% | |
| AATAGTCACCCCAAAAGGTT+TGG | - | chr5_3:44167845-44167864 | Msa0813400:intron | 40.0% | |
| ATAGTCACCCCAAAAGGTTT+GGG | - | chr5_3:44167846-44167865 | Msa0813400:intron | 40.0% | |
| TTAGGAATGATTGTGCGGTT+TGG | - | chr5_3:44167960-44167979 | Msa0813400:CDS | 40.0% | |
| TAGGAATGATTGTGCGGTTT+GGG | - | chr5_3:44167961-44167980 | Msa0813400:CDS | 40.0% | |
| ATTAACTGGATGATGCAACG+TGG | - | chr5_3:44167986-44168005 | Msa0813400:intron | 40.0% | |
| AGCCAAATTATGCAAACAGG+TGG | - | chr5_3:44168101-44168120 | Msa0813400:CDS | 40.0% | |
| GTCCACCTGTTTGCATAATT+TGG | + | chr5_3:44168106-44168125 | None:intergenic | 40.0% | |
| CGACAAGAGAGATTTGATGT+TGG | - | chr5_3:44168176-44168195 | Msa0813400:intron | 40.0% | |
| ATTGGGCGCATCATGTAACA+AGG | - | chr5_3:44167033-44167052 | Msa0813400:intron | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | - | chr5_3:44167366-44167385 | Msa0813400:CDS | 45.0% | |
| TGACTCGTACCAATGTTCGT+CGG | - | chr5_3:44167620-44167639 | Msa0813400:intron | 45.0% | |
| GAATCAGTGCCATGGAAAGA+TGG | + | chr5_3:44167795-44167814 | None:intergenic | 45.0% | |
| ! | TTGACGTCCCAAACCTTTTG+GGG | + | chr5_3:44167856-44167875 | None:intergenic | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | + | chr5_3:44167857-44167876 | None:intergenic | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | - | chr5_3:44167856-44167875 | Msa0813400:intron | 45.0% |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | - | chr5_3:44167857-44167876 | Msa0813400:intron | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | - | chr5_3:44167972-44167991 | Msa0813400:intron | 45.0% |
| ATGATGCAACGTGGAGAGAA+TGG | - | chr5_3:44167995-44168014 | Msa0813400:intron | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | - | chr5_3:44168108-44168127 | Msa0813400:CDS | 45.0% | |
| ATTGGGCGCATCATGTAACA+AGG | - | chr5_3:44167033-44167052 | Msa0813400:intron | 45.0% | |
| TTTAGCGATATGTGCTGTCG+TGG | - | chr5_3:44167366-44167385 | Msa0813400:CDS | 45.0% | |
| TGACTCGTACCAATGTTCGT+CGG | - | chr5_3:44167620-44167639 | Msa0813400:intron | 45.0% | |
| GAATCAGTGCCATGGAAAGA+TGG | + | chr5_3:44167795-44167814 | None:intergenic | 45.0% | |
| ! | TTGACGTCCCAAACCTTTTG+GGG | + | chr5_3:44167856-44167875 | None:intergenic | 45.0% |
| ! | CTTGACGTCCCAAACCTTTT+GGG | + | chr5_3:44167857-44167876 | None:intergenic | 45.0% |
| ! | CAAAAGGTTTGGGACGTCAA+GGG | - | chr5_3:44167856-44167875 | Msa0813400:intron | 45.0% |
| ! | AAAAGGTTTGGGACGTCAAG+GGG | - | chr5_3:44167857-44167876 | Msa0813400:intron | 45.0% |
| ! | GTGCGGTTTGGGTAATTAAC+TGG | - | chr5_3:44167972-44167991 | Msa0813400:intron | 45.0% |
| ATGATGCAACGTGGAGAGAA+TGG | - | chr5_3:44167995-44168014 | Msa0813400:intron | 45.0% | |
| TTATGCAAACAGGTGGACGA+AGG | - | chr5_3:44168108-44168127 | Msa0813400:CDS | 45.0% | |
| ! | CAATGTTCGTCGGTGCTTCA+CGG | - | chr5_3:44167630-44167649 | Msa0813400:intron | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | + | chr5_3:44167858-44167877 | None:intergenic | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | - | chr5_3:44167855-44167874 | Msa0813400:intron | 50.0% |
| ! | CAATGTTCGTCGGTGCTTCA+CGG | - | chr5_3:44167630-44167649 | Msa0813400:intron | 50.0% |
| ! | CCTTGACGTCCCAAACCTTT+TGG | + | chr5_3:44167858-44167877 | None:intergenic | 50.0% |
| ! | CCAAAAGGTTTGGGACGTCA+AGG | - | chr5_3:44167855-44167874 | Msa0813400:intron | 50.0% |
| !! | CGTGAAGCACCGACGAACAT+TGG | + | chr5_3:44167632-44167651 | None:intergenic | 55.0% |
| !! | CGTGAAGCACCGACGAACAT+TGG | + | chr5_3:44167632-44167651 | None:intergenic | 55.0% |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | - | chr5_3:44167634-44167653 | Msa0813400:intron | 60.0% |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | - | chr5_3:44167861-44167880 | Msa0813400:intron | 60.0% |
| ! | GTTCGTCGGTGCTTCACGGA+AGG | - | chr5_3:44167634-44167653 | Msa0813400:intron | 60.0% |
| ! | GGTTTGGGACGTCAAGGGGA+TGG | - | chr5_3:44167861-44167880 | Msa0813400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 44166740 | 44168257 | 44166740 | ID=Msa0813400;Name=Msa0813400 |
| chr5_3 | mRNA | 44166740 | 44168257 | 44166740 | ID=Msa0813400-mRNA-1;Parent=Msa0813400;Name=Msa0813400-mRNA-1;_AED=0.32;_eAED=0.35;_QI=0|0|0|0.44|0.62|0.77|9|0|284 |
| chr5_3 | exon | 44168249 | 44168257 | 44168249 | ID=Msa0813400-mRNA-1:exon:13642;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44168078 | 44168184 | 44168078 | ID=Msa0813400-mRNA-1:exon:13641;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44167897 | 44167990 | 44167897 | ID=Msa0813400-mRNA-1:exon:13640;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44167706 | 44167795 | 44167706 | ID=Msa0813400-mRNA-1:exon:13639;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44167537 | 44167626 | 44167537 | ID=Msa0813400-mRNA-1:exon:13638;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44167320 | 44167454 | 44167320 | ID=Msa0813400-mRNA-1:exon:13637;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44167111 | 44167235 | 44167111 | ID=Msa0813400-mRNA-1:exon:13636;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44166967 | 44167033 | 44166967 | ID=Msa0813400-mRNA-1:exon:13635;Parent=Msa0813400-mRNA-1 |
| chr5_3 | exon | 44166740 | 44166877 | 44166740 | ID=Msa0813400-mRNA-1:exon:13634;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44168249 | 44168257 | 44168249 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44168078 | 44168184 | 44168078 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44167897 | 44167990 | 44167897 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44167706 | 44167795 | 44167706 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44167537 | 44167626 | 44167537 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44167320 | 44167454 | 44167320 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44167111 | 44167235 | 44167111 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44166967 | 44167033 | 44166967 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| chr5_3 | CDS | 44166740 | 44166877 | 44166740 | ID=Msa0813400-mRNA-1:cds;Parent=Msa0813400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
