Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488960 | XP_013459202.1 | 97.890 | 237 | 5 | 0 | 1 | 237 | 1 | 237 | 9.04e-174 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488960 | sp|B6SGC5|CNR6_MAIZE | 64.783 | 230 | 77 | 2 | 5 | 234 | 11 | 236 | 2.97e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488960 | A0A072UU43 | 97.890 | 237 | 5 | 0 | 1 | 237 | 1 | 237 | 4.32e-174 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0488960 | Msa1235950 | 0.809559 | 1.782497e-50 | -8.615850e-47 |
| Msa0488960 | Msa1235980 | 0.807513 | 4.871769e-50 | -8.615850e-47 |
| Msa0488960 | Msa1465700 | 0.805234 | 1.473084e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488960 | MtrunA17_Chr3g0079081 | 97.890 | 237 | 5 | 0 | 1 | 237 | 1 | 237 | 8.31e-178 | 487 |
| Msa0488960 | MtrunA17_Chr4g0021021 | 78.155 | 206 | 42 | 1 | 35 | 237 | 7 | 212 | 1.28e-120 | 342 |
| Msa0488960 | MtrunA17_Chr7g0231961 | 71.591 | 88 | 24 | 1 | 75 | 162 | 11 | 97 | 1.18e-42 | 140 |
| Msa0488960 | MtrunA17_Chr7g0231971 | 65.385 | 78 | 25 | 2 | 2 | 78 | 8 | 84 | 2.99e-27 | 100 |
| Msa0488960 | MtrunA17_Chr7g0231951 | 55.696 | 79 | 32 | 2 | 162 | 237 | 7 | 85 | 3.09e-21 | 84.7 |
| Msa0488960 | MtrunA17_Chr5g0395991 | 33.803 | 142 | 78 | 5 | 73 | 212 | 4 | 131 | 6.69e-16 | 72.0 |
| Msa0488960 | MtrunA17_Chr4g0045011 | 30.573 | 157 | 70 | 4 | 44 | 190 | 39 | 166 | 3.14e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488960 | AT2G45010.1 | 64.530 | 234 | 79 | 1 | 5 | 234 | 8 | 241 | 1.82e-111 | 320 |
| Msa0488960 | AT5G51400.1 | 60.426 | 235 | 89 | 4 | 5 | 237 | 9 | 241 | 2.96e-100 | 291 |
| Msa0488960 | AT2G45010.2 | 62.371 | 194 | 69 | 1 | 45 | 234 | 2 | 195 | 4.24e-89 | 261 |
| Msa0488960 | AT2G40935.8 | 35.758 | 165 | 84 | 6 | 56 | 214 | 42 | 190 | 1.53e-22 | 91.3 |
| Msa0488960 | AT2G40935.9 | 35.758 | 165 | 84 | 6 | 56 | 214 | 42 | 190 | 1.53e-22 | 91.3 |
| Msa0488960 | AT2G40935.1 | 35.758 | 165 | 84 | 6 | 56 | 214 | 42 | 190 | 1.53e-22 | 91.3 |
| Msa0488960 | AT2G40935.6 | 35.758 | 165 | 84 | 6 | 56 | 214 | 42 | 190 | 1.53e-22 | 91.3 |
| Msa0488960 | AT2G40935.5 | 35.758 | 165 | 84 | 6 | 56 | 214 | 42 | 190 | 1.53e-22 | 91.3 |
| Msa0488960 | AT2G40935.3 | 34.722 | 144 | 74 | 5 | 75 | 214 | 52 | 179 | 9.38e-17 | 75.9 |
| Msa0488960 | AT2G40935.2 | 34.722 | 144 | 74 | 5 | 75 | 214 | 39 | 166 | 2.65e-16 | 74.3 |
| Msa0488960 | AT2G40935.7 | 34.722 | 144 | 74 | 5 | 75 | 214 | 39 | 166 | 2.65e-16 | 74.3 |
| Msa0488960 | AT2G40935.4 | 34.722 | 144 | 74 | 5 | 75 | 214 | 39 | 166 | 2.65e-16 | 74.3 |
Find 83 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAGTAACATGTATTT+TGG | 0.149592 | 3_4:+9117528 | Msa0488960:three_prime_UTR |
| CAGATCTTTATATTTAATTT+TGG | 0.152861 | 3_4:+9112794 | Msa0488960:five_prime_UTR |
| AAATATGATTCAGTATAATT+TGG | 0.200878 | 3_4:-9117660 | None:intergenic |
| CAAAATACATGTTACTCTTT+TGG | 0.209297 | 3_4:-9117527 | None:intergenic |
| CCTTGGATGACTGGGATCTT+TGG | 0.226277 | 3_4:+9114001 | Msa0488960:CDS |
| AACTGTTCTCATTGTTGATT+TGG | 0.259463 | 3_4:+9112958 | Msa0488960:five_prime_UTR |
| ACAAAAGAATTATCACTTAC+AGG | 0.272217 | 3_4:+9114718 | Msa0488960:CDS |
| GCAGGAGGTGCATAGCTTTC+GGG | 0.274134 | 3_4:-9113971 | None:intergenic |
| AGCAGGAGGTGCATAGCTTT+CGG | 0.319291 | 3_4:-9113972 | None:intergenic |
| GCTGATGAGCCTTGGATGAC+TGG | 0.320961 | 3_4:+9113992 | Msa0488960:CDS |
| TTGTTAGCAGAAGAGGATTC+AGG | 0.330765 | 3_4:-9117447 | None:intergenic |
| TCTTTGGATGTGCTGAAGAT+AGG | 0.346679 | 3_4:+9114017 | Msa0488960:CDS |
| GGCTGGATATCTTGTTCAAC+AGG | 0.373591 | 3_4:-9113043 | None:intergenic |
| CCTGCATTTCTAAATTAGTA+TGG | 0.376968 | 3_4:-9117476 | None:intergenic |
| ACCTTAATTGCAGGTTTGAC+AGG | 0.379529 | 3_4:+9114458 | Msa0488960:intron |
| ATTGTTGATTTGGTTTGTGT+TGG | 0.407941 | 3_4:+9112968 | Msa0488960:five_prime_UTR |
| GTGTTCACTGCTGCTTGCAC+TGG | 0.416115 | 3_4:+9117301 | Msa0488960:CDS |
| CACCTCCTGCTGATGAGCCT+TGG | 0.420193 | 3_4:+9113984 | Msa0488960:CDS |
| GCAGACTTCATTTCTTGAAT+CGG | 0.425012 | 3_4:-9117408 | None:intergenic |
| TATTGAAGGTGGCATTGCTC+TGG | 0.438913 | 3_4:+9114574 | Msa0488960:CDS |
| CAGTATAATTTGGCATTTGA+AGG | 0.448372 | 3_4:-9117650 | None:intergenic |
| AAAATTAGAAATGATGTCCC+TGG | 0.452754 | 3_4:-9114632 | None:intergenic |
| AATGAAGTCTGCTGATGAAA+AGG | 0.455393 | 3_4:+9117419 | Msa0488960:CDS |
| GGTGCATAGCTTTCGGGTAG+TGG | 0.458146 | 3_4:-9113965 | None:intergenic |
| TCAGCCCATTCATGTTCCTC+AGG | 0.464623 | 3_4:+9113078 | Msa0488960:CDS |
| ACAGCGACTGCACTCTTGAA+TGG | 0.474367 | 3_4:+9114599 | Msa0488960:CDS |
| GTCACTGTTGTTAGCAGAAG+AGG | 0.475137 | 3_4:-9117454 | None:intergenic |
| ATGAGTTCCCTGTGTTAGCT+TGG | 0.477588 | 3_4:+9117592 | Msa0488960:three_prime_UTR |
| GTCATCCAAGGCTCATCAGC+AGG | 0.479762 | 3_4:-9113989 | None:intergenic |
| CTTTGGATGTGCTGAAGATA+GGG | 0.480709 | 3_4:+9114018 | Msa0488960:CDS |
| CTGATGAGCCTTGGATGACT+GGG | 0.481969 | 3_4:+9113993 | Msa0488960:CDS |
| TCAAGAACACAGGGAGATGA+AGG | 0.485254 | 3_4:+9117335 | Msa0488960:CDS |
| GGAGATGAAGGGACGGCTCT+CGG | 0.485847 | 3_4:+9117347 | Msa0488960:CDS |
| TGATGATTCCAGAATTCGCC+TGG | 0.488419 | 3_4:+9117267 | Msa0488960:intron |
| CACAGGGAACTCATCCCAAA+AGG | 0.506358 | 3_4:-9117583 | None:intergenic |
| GCTTGAATGAAGACACTCCT+TGG | 0.506567 | 3_4:+9114522 | Msa0488960:CDS |
| TTCATTTCTTGAATCGGAGG+AGG | 0.507403 | 3_4:-9117402 | None:intergenic |
| CCATACTAATTTAGAAATGC+AGG | 0.507760 | 3_4:+9117476 | Msa0488960:CDS |
| GTGTGGCATATACACTGGTC+AGG | 0.512348 | 3_4:+9114682 | Msa0488960:CDS |
| GCTGATTAAGTTCACCAGGC+TGG | 0.520957 | 3_4:-9113060 | None:intergenic |
| TGCGGTGTAGTGTGGTGTGG+TGG | 0.521247 | 3_4:-9112821 | None:intergenic |
| GAAAACCTGAGGAACATGAA+TGG | 0.522214 | 3_4:-9113083 | None:intergenic |
| TTGGACATGTAGATCACATA+TGG | 0.524741 | 3_4:+9117611 | Msa0488960:three_prime_UTR |
| CTCCCTGTGTTCTTGACACA+AGG | 0.532602 | 3_4:-9117328 | None:intergenic |
| AAAACCTGAGGAACATGAAT+GGG | 0.533573 | 3_4:-9113082 | None:intergenic |
| ATTTACAATGGTGGTTTCTG+AGG | 0.540643 | 3_4:-9117379 | None:intergenic |
| TTGAATGGTGTCATCGACCC+AGG | 0.541525 | 3_4:+9114614 | Msa0488960:CDS |
| CTTTAGTTAATTTCACGTAA+CGG | 0.543458 | 3_4:-9113012 | None:intergenic |
| GACTTCATTTCTTGAATCGG+AGG | 0.547058 | 3_4:-9117405 | None:intergenic |
| AATGAAGACACTCCTTGGAC+TGG | 0.549648 | 3_4:+9114527 | Msa0488960:CDS |
| GAGTAGATTGCGGTGTAGTG+TGG | 0.552633 | 3_4:-9112829 | None:intergenic |
| CGGAGGAGGATTTACAATGG+TGG | 0.559909 | 3_4:-9117388 | None:intergenic |
| GGTTTGTGTTGGATCAGAGA+TGG | 0.571044 | 3_4:+9112979 | Msa0488960:exon |
| AATGAAATTTCGTCGCAAAG+TGG | 0.573006 | 3_4:-9112769 | None:intergenic |
| GCGGTGTAGTGTGGTGTGGT+GGG | 0.588347 | 3_4:-9112820 | None:intergenic |
| CATTCAAGCTTTCTACATTG+CGG | 0.589408 | 3_4:-9114508 | None:intergenic |
| GTTCCGAAGTGCATGGAATG+TGG | 0.594110 | 3_4:+9113938 | Msa0488960:CDS |
| AAATTAGAAATGATGTCCCT+GGG | 0.597518 | 3_4:-9114631 | None:intergenic |
| CAAATGCATGGTCCAGTCCA+AGG | 0.599207 | 3_4:-9114539 | None:intergenic |
| ATGGGCTGATTAAGTTCACC+AGG | 0.599714 | 3_4:-9113064 | None:intergenic |
| CCAAAGATCCCAGTCATCCA+AGG | 0.599742 | 3_4:-9114001 | None:intergenic |
| TGAACACAACAAGGATCACC+AGG | 0.600105 | 3_4:-9117285 | None:intergenic |
| GTTGGCAGTTCCGAAGTGCA+TGG | 0.601735 | 3_4:+9113931 | Msa0488960:intron |
| GAAGTCTGCTGATGAAAAGG+AGG | 0.603293 | 3_4:+9117422 | Msa0488960:CDS |
| GTTGAACAAGATATCCAGCC+TGG | 0.604833 | 3_4:+9113046 | Msa0488960:CDS |
| TGAATGGTGTCATCGACCCA+GGG | 0.621128 | 3_4:+9114615 | Msa0488960:CDS |
| TGTCCACATTCCATGCACTT+CGG | 0.623532 | 3_4:-9113941 | None:intergenic |
| CTACATGTCCAAGCTAACAC+AGG | 0.625640 | 3_4:-9117600 | None:intergenic |
| ATTGCGGCCAAATAAAACAC+AGG | 0.631805 | 3_4:-9114492 | None:intergenic |
| AAGCAGCAGTGAACACAACA+AGG | 0.633578 | 3_4:-9117294 | None:intergenic |
| TGCCTTGTGTCAAGAACACA+GGG | 0.633790 | 3_4:+9117326 | Msa0488960:CDS |
| AAAATGGCATGACAAATGCA+TGG | 0.633834 | 3_4:-9114551 | None:intergenic |
| CTAAATGAATGAGTAGATTG+CGG | 0.636085 | 3_4:-9112839 | None:intergenic |
| AAGACGCAAAGAGAAGCGTA+CGG | 0.641128 | 3_4:-9112877 | None:intergenic |
| AACACAGGGAGATGAAGGGA+CGG | 0.641873 | 3_4:+9117340 | Msa0488960:CDS |
| GTGCCTTGTGTCAAGAACAC+AGG | 0.643689 | 3_4:+9117325 | Msa0488960:CDS |
| GATTGCGGTGTAGTGTGGTG+TGG | 0.661153 | 3_4:-9112824 | None:intergenic |
| CAAGAACACAGGGAGATGAA+GGG | 0.668972 | 3_4:+9117336 | Msa0488960:CDS |
| ATCCAAGGCTCATCAGCAGG+AGG | 0.669513 | 3_4:-9113986 | None:intergenic |
| TACATGTCCAAGCTAACACA+GGG | 0.702089 | 3_4:-9117599 | None:intergenic |
| TTGCGGCCAAATAAAACACA+GGG | 0.706568 | 3_4:-9114491 | None:intergenic |
| TGGATGTGTGGCATATACAC+TGG | 0.707852 | 3_4:+9114677 | Msa0488960:CDS |
| AATCGGAGGAGGATTTACAA+TGG | 0.710786 | 3_4:-9117391 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAAATATCAG+TGG | - | chr3_4:9112908-9112927 | None:intergenic | 10.0% |
| !! | AACTCTATTATTATAATATT+AGG | - | chr3_4:9116534-9116553 | None:intergenic | 10.0% |
| !!! | AAGAAGTATTATTATAATTT+TGG | - | chr3_4:9116987-9117006 | None:intergenic | 10.0% |
| !!! | CAGATCTTTATATTTAATTT+TGG | + | chr3_4:9112794-9112813 | Msa0488960:five_prime_UTR | 15.0% |
| !!! | ACTAATTTAGGATTTTTTTA+AGG | + | chr3_4:9113491-9113510 | Msa0488960:intron | 15.0% |
| !! | GTGTAATATATTATCTATAT+TGG | + | chr3_4:9114092-9114111 | Msa0488960:intron | 15.0% |
| !!! | TAATGTATAATAATGTTTTC+TGG | + | chr3_4:9114957-9114976 | Msa0488960:intron | 15.0% |
| !!! | CATTTTGAAACAAATTATTT+TGG | - | chr3_4:9115718-9115737 | None:intergenic | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | - | chr3_4:9115758-9115777 | None:intergenic | 15.0% |
| !!! | GTATTATTATAATTTTGGTT+TGG | - | chr3_4:9116982-9117001 | None:intergenic | 15.0% |
| !!! | AATTATTTTCTTATACCTTT+TGG | + | chr3_4:9117568-9117587 | Msa0488960:three_prime_UTR | 15.0% |
| !!! | ATTATTTTCTTATACCTTTT+GGG | + | chr3_4:9117569-9117588 | Msa0488960:three_prime_UTR | 15.0% |
| !! | AAATATGATTCAGTATAATT+TGG | - | chr3_4:9117663-9117682 | None:intergenic | 15.0% |
| !! | ACTGATACTAATTAAAAATG+TGG | + | chr3_4:9113239-9113258 | Msa0488960:intron | 20.0% |
| !! | CTGATACTAATTAAAAATGT+GGG | + | chr3_4:9113240-9113259 | Msa0488960:intron | 20.0% |
| !! | TGATACTAATTAAAAATGTG+GGG | + | chr3_4:9113241-9113260 | Msa0488960:intron | 20.0% |
| !!! | CAATAATTTTTACGAAAAAG+TGG | + | chr3_4:9113388-9113407 | Msa0488960:intron | 20.0% |
| !!! | ATTTTTTTTCATTAGTAGCT+GGG | + | chr3_4:9113880-9113899 | Msa0488960:intron | 20.0% |
| !! | ATATATTATCTATATTGGAC+TGG | + | chr3_4:9114097-9114116 | Msa0488960:intron | 20.0% |
| !! | TCATGCTTTATATGTAAAAT+CGG | + | chr3_4:9114198-9114217 | Msa0488960:intron | 20.0% |
| !!! | ACATCATTTCTAATTTTTGA+GGG | + | chr3_4:9114638-9114657 | Msa0488960:CDS | 20.0% |
| !!! | ACATTGATTTTAACATCTAA+TGG | - | chr3_4:9114817-9114836 | None:intergenic | 20.0% |
| !!! | GGACATCATAATATTTTATA+AGG | - | chr3_4:9115059-9115078 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | + | chr3_4:9115836-9115855 | Msa0488960:intron | 20.0% |
| !!! | GTCTTTTTCTTATAAAGTAA+GGG | + | chr3_4:9115837-9115856 | Msa0488960:intron | 20.0% |
| !! | ATCTTATCTATATCACTAAA+AGG | - | chr3_4:9116238-9116257 | None:intergenic | 20.0% |
| !! | AATTATAGGCCAAATTATTA+AGG | + | chr3_4:9116370-9116389 | Msa0488960:intron | 20.0% |
| !! | TTATAATATTAGGCGTATAA+AGG | - | chr3_4:9116524-9116543 | None:intergenic | 20.0% |
| !!! | TAGATGTTATTTTTCACAAA+AGG | + | chr3_4:9116918-9116937 | Msa0488960:intron | 20.0% |
| !! | AATAATACTTCTTTCGTTTA+TGG | + | chr3_4:9117020-9117039 | Msa0488960:intron | 20.0% |
| ! | CTTTAGTTAATTTCACGTAA+CGG | - | chr3_4:9113015-9113034 | None:intergenic | 25.0% |
| ! | ATCCTTCTTTAATTCTTTCT+TGG | + | chr3_4:9113106-9113125 | Msa0488960:intron | 25.0% |
| ! | TCCTTCTTTAATTCTTTCTT+GGG | + | chr3_4:9113107-9113126 | Msa0488960:intron | 25.0% |
| !! | TTTTCATTTGGAAGAATCTT+AGG | + | chr3_4:9113131-9113150 | Msa0488960:intron | 25.0% |
| !!! | CCAAATAGTTTTTATTGGTT+CGG | - | chr3_4:9113347-9113366 | None:intergenic | 25.0% |
| !! | CCAAACCAAATAGTTTTTAT+TGG | - | chr3_4:9113352-9113371 | None:intergenic | 25.0% |
| ! | CCAATAAAAACTATTTGGTT+TGG | + | chr3_4:9113349-9113368 | Msa0488960:intron | 25.0% |
| !!! | TAAAAACTATTTGGTTTGGT+TGG | + | chr3_4:9113353-9113372 | Msa0488960:intron | 25.0% |
| ! | TAACACTATTGTTCATTGAT+TGG | + | chr3_4:9113517-9113536 | Msa0488960:intron | 25.0% |
| ! | AATATTATCAAGATCCATAG+TGG | - | chr3_4:9113678-9113697 | None:intergenic | 25.0% |
| ! | AAAAACAGGTATATTGACAT+TGG | - | chr3_4:9113763-9113782 | None:intergenic | 25.0% |
| !! | TTTTTATCTCAGACAAAAAC+AGG | - | chr3_4:9113777-9113796 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTCATTAGTAGC+TGG | + | chr3_4:9113879-9113898 | Msa0488960:intron | 25.0% |
| !! | TTTTAATAATGCTTTGCAGT+TGG | + | chr3_4:9113913-9113932 | Msa0488960:intron | 25.0% |
| ! | TGTCAAACTTTACTTGAATT+AGG | + | chr3_4:9114069-9114088 | Msa0488960:intron | 25.0% |
| ! | GTCAAACTTTACTTGAATTA+GGG | + | chr3_4:9114070-9114089 | Msa0488960:intron | 25.0% |
| !! | GACATCATTTCTAATTTTTG+AGG | + | chr3_4:9114637-9114656 | Msa0488960:CDS | 25.0% |
| !!! | TTGAGGGTTTATTTTTTACT+TGG | + | chr3_4:9114654-9114673 | Msa0488960:CDS | 25.0% |
| ! | ACAAAAGAATTATCACTTAC+AGG | + | chr3_4:9114718-9114737 | Msa0488960:CDS | 25.0% |
| !! | CAGCTTAAGATTTTATAAAC+TGG | - | chr3_4:9115080-9115099 | None:intergenic | 25.0% |
| ! | TATTTATGTCAAACACTTCT+TGG | + | chr3_4:9115164-9115183 | Msa0488960:intron | 25.0% |
| !! | TAAAATATCAGCAGTCTTTT+TGG | + | chr3_4:9115602-9115621 | Msa0488960:intron | 25.0% |
| !!! | TGACATATACTTGTTTTGAA+TGG | + | chr3_4:9116040-9116059 | Msa0488960:intron | 25.0% |
| ! | GTATTAAAAGAATAACTAGC+CGG | - | chr3_4:9116119-9116138 | None:intergenic | 25.0% |
| ! | CATCCAAATCCTTAATAATT+TGG | - | chr3_4:9116382-9116401 | None:intergenic | 25.0% |
| ! | TATTAAGGATTTGGATGTAA+AGG | + | chr3_4:9116385-9116404 | Msa0488960:intron | 25.0% |
| !! | GTAAAATGCTTTGAATATAC+AGG | - | chr3_4:9117123-9117142 | None:intergenic | 25.0% |
| !! | CAAAATACATGTTACTCTTT+TGG | - | chr3_4:9117530-9117549 | None:intergenic | 25.0% |
| !! | CAAAAGAGTAACATGTATTT+TGG | + | chr3_4:9117528-9117547 | Msa0488960:three_prime_UTR | 25.0% |
| !!! | ATGTATTTTGGAATTTTGCT+TGG | + | chr3_4:9117540-9117559 | Msa0488960:three_prime_UTR | 25.0% |
| CTAAATGAATGAGTAGATTG+CGG | - | chr3_4:9112842-9112861 | None:intergenic | 30.0% | |
| ! | AACTGTTCTCATTGTTGATT+TGG | + | chr3_4:9112958-9112977 | Msa0488960:five_prime_UTR | 30.0% |
| !! | ATTGTTGATTTGGTTTGTGT+TGG | + | chr3_4:9112968-9112987 | Msa0488960:five_prime_UTR | 30.0% |
| ACCCAAGAAAGAATTAAAGA+AGG | - | chr3_4:9113111-9113130 | None:intergenic | 30.0% | |
| ! | TCTTTCTTGGGTTTTTCATT+TGG | + | chr3_4:9113119-9113138 | Msa0488960:intron | 30.0% |
| !!! | TTGACTTGGTTCGTTTTTTT+GGG | + | chr3_4:9113309-9113328 | Msa0488960:intron | 30.0% |
| CCGAACCAATAAAAACTATT+TGG | + | chr3_4:9113344-9113363 | Msa0488960:intron | 30.0% | |
| AAAGTGGAAACATGAACTTA+TGG | + | chr3_4:9113404-9113423 | Msa0488960:intron | 30.0% | |
| AAGTGGAAACATGAACTTAT+GGG | + | chr3_4:9113405-9113424 | Msa0488960:intron | 30.0% | |
| ! | GTGTTTGGAATCACTAATTT+AGG | + | chr3_4:9113479-9113498 | Msa0488960:intron | 30.0% |
| ! | CTATTGTTCATTGATTGGTA+TGG | + | chr3_4:9113522-9113541 | Msa0488960:intron | 30.0% |
| !! | TTTTGTCCCTGTGTTTTATT+TGG | + | chr3_4:9114485-9114504 | Msa0488960:CDS | 30.0% |
| !!! | TGTCATGCCATTTTTATTGA+AGG | + | chr3_4:9114560-9114579 | Msa0488960:CDS | 30.0% |
| AATGCCACCTTCAATAAAAA+TGG | - | chr3_4:9114570-9114589 | None:intergenic | 30.0% | |
| AAATTAGAAATGATGTCCCT+GGG | - | chr3_4:9114634-9114653 | None:intergenic | 30.0% | |
| AAAATTAGAAATGATGTCCC+TGG | - | chr3_4:9114635-9114654 | None:intergenic | 30.0% | |
| !!! | AGGGTTTATTTTTTACTTGG+TGG | + | chr3_4:9114657-9114676 | Msa0488960:CDS | 30.0% |
| ATTTAACAAAGTGTGCATAC+TGG | + | chr3_4:9114901-9114920 | Msa0488960:intron | 30.0% | |
| ! | CAAGTATATAATAGAAGCAC+TGG | + | chr3_4:9115025-9115044 | Msa0488960:intron | 30.0% |
| CAATAATTAGACATGTAGAG+AGG | + | chr3_4:9115263-9115282 | Msa0488960:intron | 30.0% | |
| TTGATCTACTCTTCTAACAA+CGG | - | chr3_4:9115320-9115339 | None:intergenic | 30.0% | |
| TGTTAGAAGAGTAGATCAAA+TGG | + | chr3_4:9115321-9115340 | Msa0488960:intron | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | - | chr3_4:9115389-9115408 | None:intergenic | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | + | chr3_4:9115387-9115406 | Msa0488960:intron | 30.0% | |
| AACCATTAGAAAGGATTTAG+AGG | + | chr3_4:9115396-9115415 | Msa0488960:intron | 30.0% | |
| GTTCTATCAAAAACCATAGT+TGG | - | chr3_4:9115436-9115455 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr3_4:9115440-9115459 | Msa0488960:intron | 30.0% |
| CACAATAATTAGACAGACAA+TGG | + | chr3_4:9115544-9115563 | Msa0488960:intron | 30.0% | |
| !!! | GACTGCTGATATTTTAAGTT+CGG | - | chr3_4:9115598-9115617 | None:intergenic | 30.0% |
| !! | AAGTGACACTCATTTTGAAA+CGG | - | chr3_4:9115692-9115711 | None:intergenic | 30.0% |
| AAATTGTGTGAGAGAAAAGT+TGG | - | chr3_4:9115798-9115817 | None:intergenic | 30.0% | |
| ! | TTAGAGATTCCTTTTAGTGA+TGG | + | chr3_4:9116195-9116214 | Msa0488960:intron | 30.0% |
| GTGATATAGATAAGATGCTT+AGG | + | chr3_4:9116242-9116261 | Msa0488960:intron | 30.0% | |
| GAATTAGACTATCCTTCATA+TGG | - | chr3_4:9116321-9116340 | None:intergenic | 30.0% | |
| ATAGTCTAATTCCAATAGCT+AGG | + | chr3_4:9116329-9116348 | Msa0488960:intron | 30.0% | |
| TAGTCTAATTCCAATAGCTA+GGG | + | chr3_4:9116330-9116349 | Msa0488960:intron | 30.0% | |
| ! | CTATAATTTTTCTGTCTCTC+CGG | - | chr3_4:9116358-9116377 | None:intergenic | 30.0% |
| AGGCCAAATTATTAAGGATT+TGG | + | chr3_4:9116376-9116395 | Msa0488960:intron | 30.0% | |
| !! | ATTTCTTTTGAGAAATGGAG+AGG | - | chr3_4:9116432-9116451 | None:intergenic | 30.0% |
| !! | CCTTCATTTCTTTTGAGAAA+TGG | - | chr3_4:9116437-9116456 | None:intergenic | 30.0% |
| CCATTTCTCAAAAGAAATGA+AGG | + | chr3_4:9116434-9116453 | Msa0488960:intron | 30.0% | |
| GCATAATTATGTCATGTTCT+TGG | + | chr3_4:9116490-9116509 | Msa0488960:intron | 30.0% | |
| AATAGAGTTTCCCATTTCTT+TGG | + | chr3_4:9116545-9116564 | Msa0488960:intron | 30.0% | |
| TTCCATATCTCCAAAGAAAT+GGG | - | chr3_4:9116558-9116577 | None:intergenic | 30.0% | |
| TTTCCATATCTCCAAAGAAA+TGG | - | chr3_4:9116559-9116578 | None:intergenic | 30.0% | |
| ! | ATTTCTTTGGAGATATGGAA+AGG | + | chr3_4:9116558-9116577 | Msa0488960:intron | 30.0% |
| TTTAAATGACGCAACTTTAG+GGG | - | chr3_4:9116852-9116871 | None:intergenic | 30.0% | |
| GTTTAAATGACGCAACTTTA+GGG | - | chr3_4:9116853-9116872 | None:intergenic | 30.0% | |
| TGTTTAAATGACGCAACTTT+AGG | - | chr3_4:9116854-9116873 | None:intergenic | 30.0% | |
| AATATAATCCTTGTGTGAAC+AGG | + | chr3_4:9116879-9116898 | Msa0488960:intron | 30.0% | |
| ! | AAAGCAGATTTTCACATTCA+AGG | + | chr3_4:9117050-9117069 | Msa0488960:intron | 30.0% |
| ! | ATTATTTCCTCTAGCTTGTA+TGG | + | chr3_4:9117189-9117208 | Msa0488960:intron | 30.0% |
| CCTGCATTTCTAAATTAGTA+TGG | - | chr3_4:9117479-9117498 | None:intergenic | 30.0% | |
| CCATACTAATTTAGAAATGC+AGG | + | chr3_4:9117476-9117495 | Msa0488960:CDS | 30.0% | |
| ! | ACTCTTTTGGATGTTAACAA+TGG | - | chr3_4:9117517-9117536 | None:intergenic | 30.0% |
| CAGTATAATTTGGCATTTGA+AGG | - | chr3_4:9117653-9117672 | None:intergenic | 30.0% | |
| AAAACCTGAGGAACATGAAT+GGG | - | chr3_4:9113085-9113104 | None:intergenic | 35.0% | |
| TAAAGAAGGATGAAAACCTG+AGG | - | chr3_4:9113097-9113116 | None:intergenic | 35.0% | |
| !!! | GTTGACTTGGTTCGTTTTTT+TGG | + | chr3_4:9113308-9113327 | Msa0488960:intron | 35.0% |
| TTCCAAACACACACAAACAA+AGG | - | chr3_4:9113469-9113488 | None:intergenic | 35.0% | |
| ATTGGTATGGTTTAACTCAC+TGG | + | chr3_4:9113535-9113554 | Msa0488960:intron | 35.0% | |
| !!! | GGTTTAACTCACTGGTTTTA+TGG | + | chr3_4:9113543-9113562 | Msa0488960:intron | 35.0% |
| !!! | AACTCACTGGTTTTATGGTT+TGG | + | chr3_4:9113548-9113567 | Msa0488960:intron | 35.0% |
| ATCCTTCATACATACAGTAG+AGG | - | chr3_4:9113590-9113609 | None:intergenic | 35.0% | |
| GAATCAAGATCTGTTGACAT+TGG | - | chr3_4:9113735-9113754 | None:intergenic | 35.0% | |
| !!! | AAGTGCGATTGTGCTTTTTT+TGG | + | chr3_4:9113847-9113866 | Msa0488960:intron | 35.0% |
| !!! | AGTGCGATTGTGCTTTTTTT+GGG | + | chr3_4:9113848-9113867 | Msa0488960:intron | 35.0% |
| TTAGATCACTTCCAGTACAA+AGG | - | chr3_4:9114132-9114151 | None:intergenic | 35.0% | |
| ! | AAAGCATGAAGAGCTTTTGA+CGG | - | chr3_4:9114187-9114206 | None:intergenic | 35.0% |
| !!! | GTACGGTTTTGAACAATTGT+TGG | + | chr3_4:9114332-9114351 | Msa0488960:intron | 35.0% |
| TAAGTCCTTTATGACGTGTA+TGG | - | chr3_4:9114364-9114383 | None:intergenic | 35.0% | |
| CATTCAAGCTTTCTACATTG+CGG | - | chr3_4:9114511-9114530 | None:intergenic | 35.0% | |
| AAAATGGCATGACAAATGCA+TGG | - | chr3_4:9114554-9114573 | None:intergenic | 35.0% | |
| !!! | CATGCCATTTTTATTGAAGG+TGG | + | chr3_4:9114563-9114582 | Msa0488960:CDS | 35.0% |
| !!! | TTTTTTACTTGGTGGATGTG+TGG | + | chr3_4:9114665-9114684 | Msa0488960:CDS | 35.0% |
| TTGGTCACTTCAAATACTAC+TGG | + | chr3_4:9115183-9115202 | Msa0488960:intron | 35.0% | |
| ATTAGACATGTAGAGAGGTT+TGG | + | chr3_4:9115268-9115287 | Msa0488960:intron | 35.0% | |
| TAGAAGAGTAGATCAAATGG+AGG | + | chr3_4:9115324-9115343 | Msa0488960:intron | 35.0% | |
| GTTTCTCTAATGGCTTTCTT+AGG | - | chr3_4:9115379-9115398 | None:intergenic | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | - | chr3_4:9115401-9115420 | None:intergenic | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | - | chr3_4:9115902-9115921 | None:intergenic | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | + | chr3_4:9115902-9115921 | Msa0488960:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3_4:9115928-9115947 | Msa0488960:intron | 35.0% |
| ! | CATGTCGTATTTGTGCTTTT+AGG | + | chr3_4:9116074-9116093 | Msa0488960:intron | 35.0% |
| TTAAAAGAATAACTAGCCGG+CGG | - | chr3_4:9116116-9116135 | None:intergenic | 35.0% | |
| CGGAGAGACAGAAAAATTAT+AGG | + | chr3_4:9116356-9116375 | Msa0488960:intron | 35.0% | |
| TAAAGGTCGACTATATGAGT+AGG | + | chr3_4:9116402-9116421 | Msa0488960:intron | 35.0% | |
| AAAGGTCGACTATATGAGTA+GGG | + | chr3_4:9116403-9116422 | Msa0488960:intron | 35.0% | |
| ! | TTCCCATTTCTTTGGAGATA+TGG | + | chr3_4:9116553-9116572 | Msa0488960:intron | 35.0% |
| TGAATAATGTCGAGATCAGT+AGG | - | chr3_4:9116592-9116611 | None:intergenic | 35.0% | |
| AAACAATGCACTGTAGACAA+AGG | - | chr3_4:9116801-9116820 | None:intergenic | 35.0% | |
| CACAAAAGGAGAAGTGATTT+AGG | + | chr3_4:9116932-9116951 | Msa0488960:intron | 35.0% | |
| AAAGCAGCCATTAATACCTT+TGG | - | chr3_4:9117082-9117101 | None:intergenic | 35.0% | |
| TACAAGTTACTAGGAAACAC+AGG | - | chr3_4:9117145-9117164 | None:intergenic | 35.0% | |
| CAATGCAAGTACAAGTTACT+AGG | - | chr3_4:9117154-9117173 | None:intergenic | 35.0% | |
| ATTTACAATGGTGGTTTCTG+AGG | - | chr3_4:9117382-9117401 | None:intergenic | 35.0% | |
| GCAGACTTCATTTCTTGAAT+CGG | - | chr3_4:9117411-9117430 | None:intergenic | 35.0% | |
| AATGAAGTCTGCTGATGAAA+AGG | + | chr3_4:9117419-9117438 | Msa0488960:CDS | 35.0% | |
| TTGGACATGTAGATCACATA+TGG | + | chr3_4:9117611-9117630 | Msa0488960:three_prime_UTR | 35.0% | |
| GAAAACCTGAGGAACATGAA+TGG | - | chr3_4:9113086-9113105 | None:intergenic | 40.0% | |
| TGGGGTAAGTCAAAACATGT+GGG | + | chr3_4:9113259-9113278 | Msa0488960:intron | 40.0% | |
| !! | TCAAAACATGTGGGGGTATT+TGG | + | chr3_4:9113268-9113287 | Msa0488960:intron | 40.0% |
| !! | CAAAACATGTGGGGGTATTT+GGG | + | chr3_4:9113269-9113288 | Msa0488960:intron | 40.0% |
| !! | AAAACATGTGGGGGTATTTG+GGG | + | chr3_4:9113270-9113289 | Msa0488960:intron | 40.0% |
| ! | TGCCTTTGTTTGTGTGTGTT+TGG | + | chr3_4:9113464-9113483 | Msa0488960:intron | 40.0% |
| AGCCTCTACTGTATGTATGA+AGG | + | chr3_4:9113585-9113604 | Msa0488960:intron | 40.0% | |
| ATTGTTCTCTAAACCCGTGT+TGG | + | chr3_4:9113608-9113627 | Msa0488960:intron | 40.0% | |
| AAACTGGCAGATGCAAGAAA+GGG | + | chr3_4:9113635-9113654 | Msa0488960:intron | 40.0% | |
| TCTTTGGATGTGCTGAAGAT+AGG | + | chr3_4:9114017-9114036 | Msa0488960:CDS | 40.0% | |
| CTTTGGATGTGCTGAAGATA+GGG | + | chr3_4:9114018-9114037 | Msa0488960:CDS | 40.0% | |
| ! | CTTTTGACGGTAACGATTAC+TGG | - | chr3_4:9114174-9114193 | None:intergenic | 40.0% |
| AGCATATCTCAGAACAACAG+CGG | - | chr3_4:9114266-9114285 | None:intergenic | 40.0% | |
| TACTGTTCCACCTTAATTGC+AGG | + | chr3_4:9114449-9114468 | Msa0488960:intron | 40.0% | |
| TGTCAAACCTGCAATTAAGG+TGG | - | chr3_4:9114459-9114478 | None:intergenic | 40.0% | |
| ACCTTAATTGCAGGTTTGAC+AGG | + | chr3_4:9114458-9114477 | Msa0488960:intron | 40.0% | |
| TCCTGTCAAACCTGCAATTA+AGG | - | chr3_4:9114462-9114481 | None:intergenic | 40.0% | |
| TTGCGGCCAAATAAAACACA+GGG | - | chr3_4:9114494-9114513 | None:intergenic | 40.0% | |
| ATTGCGGCCAAATAAAACAC+AGG | - | chr3_4:9114495-9114514 | None:intergenic | 40.0% | |
| ATACATGCTCGACACGAATA+TGG | - | chr3_4:9115147-9115166 | None:intergenic | 40.0% | |
| TAGATCAAATGGAGGAGAGT+CGG | + | chr3_4:9115332-9115351 | Msa0488960:intron | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | + | chr3_4:9115408-9115427 | Msa0488960:intron | 40.0% | |
| ! | CAATGAGTTGGATCCAACTA+TGG | + | chr3_4:9115420-9115439 | Msa0488960:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr3_4:9115932-9115951 | None:intergenic | 40.0% |
| !!! | TGACACTCATTTTGAAACGG+AGG | - | chr3_4:9115689-9115708 | None:intergenic | 40.0% |
| AAAGTTGGAGAGGGTAAAGT+TGG | - | chr3_4:9115783-9115802 | None:intergenic | 40.0% | |
| TGTGAGAGAAAAGTTGGAGA+GGG | - | chr3_4:9115792-9115811 | None:intergenic | 40.0% | |
| AGCCAATTGCACACAGATTA+AGG | - | chr3_4:9115907-9115926 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_4:9115932-9115951 | Msa0488960:intron | 40.0% |
| ATCTCGCTTTGCATGTTTGA+TGG | + | chr3_4:9116164-9116183 | Msa0488960:intron | 40.0% | |
| AAAGCTCAGCCATCACTAAA+AGG | - | chr3_4:9116207-9116226 | None:intergenic | 40.0% | |
| ! | TTAGTGATGGCTGAGCTTTT+AGG | + | chr3_4:9116208-9116227 | Msa0488960:intron | 40.0% |
| ! | TAGTGATGGCTGAGCTTTTA+GGG | + | chr3_4:9116209-9116228 | Msa0488960:intron | 40.0% |
| GATTTGAGCATGCGTAGAAA+AGG | + | chr3_4:9116266-9116285 | Msa0488960:intron | 40.0% | |
| AAGGAGGGAAAACCATATGA+AGG | + | chr3_4:9116306-9116325 | Msa0488960:intron | 40.0% | |
| AATTCCAATAGCTAGGGATC+CGG | + | chr3_4:9116336-9116355 | Msa0488960:intron | 40.0% | |
| AAGGTCGACTATATGAGTAG+GGG | + | chr3_4:9116404-9116423 | Msa0488960:intron | 40.0% | |
| ! | AGCCAAAGTCTTTTCTCACT+CGG | - | chr3_4:9116655-9116674 | None:intergenic | 40.0% |
| AGACTTTGGCTGTTGTTGTA+TGG | + | chr3_4:9116664-9116683 | Msa0488960:intron | 40.0% | |
| ! | GCAGATTTTCACATTCAAGG+TGG | + | chr3_4:9117053-9117072 | Msa0488960:intron | 40.0% |
| ! | GATTTTCACATTCAAGGTGG+TGG | + | chr3_4:9117056-9117075 | Msa0488960:intron | 40.0% |
| AATCGGAGGAGGATTTACAA+TGG | - | chr3_4:9117394-9117413 | None:intergenic | 40.0% | |
| TTCATTTCTTGAATCGGAGG+AGG | - | chr3_4:9117405-9117424 | None:intergenic | 40.0% | |
| GACTTCATTTCTTGAATCGG+AGG | - | chr3_4:9117408-9117427 | None:intergenic | 40.0% | |
| TTGTTAGCAGAAGAGGATTC+AGG | - | chr3_4:9117450-9117469 | None:intergenic | 40.0% | |
| TACATGTCCAAGCTAACACA+GGG | - | chr3_4:9117602-9117621 | None:intergenic | 40.0% | |
| ! | AAGACGCAAAGAGAAGCGTA+CGG | - | chr3_4:9112880-9112899 | None:intergenic | 45.0% |
| GGTTTGTGTTGGATCAGAGA+TGG | + | chr3_4:9112979-9112998 | Msa0488960:exon | 45.0% | |
| GGCTGGATATCTTGTTCAAC+AGG | - | chr3_4:9113046-9113065 | None:intergenic | 45.0% | |
| GTTGAACAAGATATCCAGCC+TGG | + | chr3_4:9113046-9113065 | Msa0488960:CDS | 45.0% | |
| ! | ATGGGCTGATTAAGTTCACC+AGG | - | chr3_4:9113067-9113086 | None:intergenic | 45.0% |
| GAAACACTGATACCAGACAC+CGG | + | chr3_4:9113201-9113220 | Msa0488960:intron | 45.0% | |
| GTGGGGTAAGTCAAAACATG+TGG | + | chr3_4:9113258-9113277 | Msa0488960:intron | 45.0% | |
| GGGGTAAGTCAAAACATGTG+GGG | + | chr3_4:9113260-9113279 | Msa0488960:intron | 45.0% | |
| GGGTAAGTCAAAACATGTGG+GGG | + | chr3_4:9113261-9113280 | Msa0488960:intron | 45.0% | |
| ! | TTTGGGGTTAGGGTTGTCAA+AGG | + | chr3_4:9113286-9113305 | Msa0488960:intron | 45.0% |
| AGGGTTGTCAAAGGTTGACT+TGG | + | chr3_4:9113295-9113314 | Msa0488960:intron | 45.0% | |
| ! | AACCCGTGTTGGTATGAAAC+TGG | + | chr3_4:9113619-9113638 | Msa0488960:intron | 45.0% |
| TGCCAGTTTCATACCAACAC+GGG | - | chr3_4:9113624-9113643 | None:intergenic | 45.0% | |
| CTGCCAGTTTCATACCAACA+CGG | - | chr3_4:9113625-9113644 | None:intergenic | 45.0% | |
| GAAACTGGCAGATGCAAGAA+AGG | + | chr3_4:9113634-9113653 | Msa0488960:intron | 45.0% | |
| !! | CCATAGTGGACACTGGATTT+GGG | - | chr3_4:9113664-9113683 | None:intergenic | 45.0% |
| !! | TCCATAGTGGACACTGGATT+TGG | - | chr3_4:9113665-9113684 | None:intergenic | 45.0% |
| !! | TCAAGATCCATAGTGGACAC+TGG | - | chr3_4:9113671-9113690 | None:intergenic | 45.0% |
| TGTCCACATTCCATGCACTT+CGG | - | chr3_4:9113944-9113963 | None:intergenic | 45.0% | |
| TGCTATAGCGCTGTTGTGTA+CGG | + | chr3_4:9114315-9114334 | Msa0488960:intron | 45.0% | |
| CCTTTATGACGTGTATGGCA+CGG | - | chr3_4:9114359-9114378 | None:intergenic | 45.0% | |
| GCTTGAATGAAGACACTCCT+TGG | + | chr3_4:9114522-9114541 | Msa0488960:CDS | 45.0% | |
| AATGAAGACACTCCTTGGAC+TGG | + | chr3_4:9114527-9114546 | Msa0488960:CDS | 45.0% | |
| TATTGAAGGTGGCATTGCTC+TGG | + | chr3_4:9114574-9114593 | Msa0488960:CDS | 45.0% | |
| TGGATGTGTGGCATATACAC+TGG | + | chr3_4:9114677-9114696 | Msa0488960:CDS | 45.0% | |
| TGGACATGTAGAGAGAAGAC+CGG | + | chr3_4:9115288-9115307 | Msa0488960:intron | 45.0% | |
| CTTCTAACAACGGCATCTAC+CGG | - | chr3_4:9115310-9115329 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+GGG | + | chr3_4:9115333-9115352 | Msa0488960:intron | 45.0% | |
| AGTCGGGTTAAAAGAGGTAG+AGG | + | chr3_4:9115349-9115368 | Msa0488960:intron | 45.0% | |
| CTTATCCCACTAAGTGGTGT+CGG | - | chr3_4:9115485-9115504 | None:intergenic | 45.0% | |
| GTGTGAGAGAAAAGTTGGAG+AGG | - | chr3_4:9115793-9115812 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_4:9115931-9115950 | Msa0488960:intron | 45.0% |
| CTCCTTACTGATGCTTCTGT+GGG | - | chr3_4:9116292-9116311 | None:intergenic | 45.0% | |
| !! | CACAGAAGCATCAGTAAGGA+GGG | + | chr3_4:9116291-9116310 | Msa0488960:intron | 45.0% |
| ATGTCGAGATCAGTAGGAGT+AGG | - | chr3_4:9116586-9116605 | None:intergenic | 45.0% | |
| ! | CAAAGTCTTTTCTCACTCGG+TGG | - | chr3_4:9116652-9116671 | None:intergenic | 45.0% |
| CACCGAGTGAGAAAAGACTT+TGG | + | chr3_4:9116650-9116669 | Msa0488960:intron | 45.0% | |
| ! | AATAAGGCAAGGCACCAGAT+GGG | - | chr3_4:9116756-9116775 | None:intergenic | 45.0% |
| CAGATAGACCTGTTCACACA+AGG | - | chr3_4:9116890-9116909 | None:intergenic | 45.0% | |
| !! | GTGGTGGCCAAAGGTATTAA+TGG | + | chr3_4:9117072-9117091 | Msa0488960:intron | 45.0% |
| GTGTAGACCATACAAGCTAG+AGG | - | chr3_4:9117199-9117218 | None:intergenic | 45.0% | |
| TGATGATTCCAGAATTCGCC+TGG | + | chr3_4:9117267-9117286 | Msa0488960:intron | 45.0% | |
| TGAACACAACAAGGATCACC+AGG | - | chr3_4:9117288-9117307 | None:intergenic | 45.0% | |
| AAGCAGCAGTGAACACAACA+AGG | - | chr3_4:9117297-9117316 | None:intergenic | 45.0% | |
| TGCCTTGTGTCAAGAACACA+GGG | + | chr3_4:9117326-9117345 | Msa0488960:CDS | 45.0% | |
| TCAAGAACACAGGGAGATGA+AGG | + | chr3_4:9117335-9117354 | Msa0488960:CDS | 45.0% | |
| CAAGAACACAGGGAGATGAA+GGG | + | chr3_4:9117336-9117355 | Msa0488960:CDS | 45.0% | |
| GAAGTCTGCTGATGAAAAGG+AGG | + | chr3_4:9117422-9117441 | Msa0488960:CDS | 45.0% | |
| GTCACTGTTGTTAGCAGAAG+AGG | - | chr3_4:9117457-9117476 | None:intergenic | 45.0% | |
| ATGAGTTCCCTGTGTTAGCT+TGG | + | chr3_4:9117592-9117611 | Msa0488960:three_prime_UTR | 45.0% | |
| CTACATGTCCAAGCTAACAC+AGG | - | chr3_4:9117603-9117622 | None:intergenic | 45.0% | |
| GAGTAGATTGCGGTGTAGTG+TGG | - | chr3_4:9112832-9112851 | None:intergenic | 50.0% | |
| GCTGATTAAGTTCACCAGGC+TGG | - | chr3_4:9113063-9113082 | None:intergenic | 50.0% | |
| TCAGCCCATTCATGTTCCTC+AGG | + | chr3_4:9113078-9113097 | Msa0488960:CDS | 50.0% | |
| !! | ATGTGGGGGTATTTGGGGTT+AGG | + | chr3_4:9113275-9113294 | Msa0488960:intron | 50.0% |
| !! | TGTGGGGGTATTTGGGGTTA+GGG | + | chr3_4:9113276-9113295 | Msa0488960:intron | 50.0% |
| CCCAAATCCAGTGTCCACTA+TGG | + | chr3_4:9113661-9113680 | Msa0488960:intron | 50.0% | |
| GTTCCGAAGTGCATGGAATG+TGG | + | chr3_4:9113938-9113957 | Msa0488960:CDS | 50.0% | |
| ! | AGCAGGAGGTGCATAGCTTT+CGG | - | chr3_4:9113975-9113994 | None:intergenic | 50.0% |
| CTGATGAGCCTTGGATGACT+GGG | + | chr3_4:9113993-9114012 | Msa0488960:CDS | 50.0% | |
| CCAAAGATCCCAGTCATCCA+AGG | - | chr3_4:9114004-9114023 | None:intergenic | 50.0% | |
| CCTTGGATGACTGGGATCTT+TGG | + | chr3_4:9114001-9114020 | Msa0488960:CDS | 50.0% | |
| GGTCGTTTGAGCCTTTGTAC+TGG | + | chr3_4:9114118-9114137 | Msa0488960:intron | 50.0% | |
| CCGTGCCATACACGTCATAA+AGG | + | chr3_4:9114356-9114375 | Msa0488960:intron | 50.0% | |
| CAAATGCATGGTCCAGTCCA+AGG | - | chr3_4:9114542-9114561 | None:intergenic | 50.0% | |
| ACAGCGACTGCACTCTTGAA+TGG | + | chr3_4:9114599-9114618 | Msa0488960:CDS | 50.0% | |
| !! | TTGAATGGTGTCATCGACCC+AGG | + | chr3_4:9114614-9114633 | Msa0488960:CDS | 50.0% |
| !! | TGAATGGTGTCATCGACCCA+GGG | + | chr3_4:9114615-9114634 | Msa0488960:CDS | 50.0% |
| GTGTGGCATATACACTGGTC+AGG | + | chr3_4:9114682-9114701 | Msa0488960:CDS | 50.0% | |
| GAGGAGAGTCGGGTTAAAAG+AGG | + | chr3_4:9115343-9115362 | Msa0488960:intron | 50.0% | |
| !! | ACTAAGTGGTGTCGGCTACA+TGG | - | chr3_4:9115477-9115496 | None:intergenic | 50.0% |
| ATGTAGCCGACACCACTTAG+TGG | + | chr3_4:9115476-9115495 | Msa0488960:intron | 50.0% | |
| TGTAGCCGACACCACTTAGT+GGG | + | chr3_4:9115477-9115496 | Msa0488960:intron | 50.0% | |
| CGACACCACTTAGTGGGATA+AGG | + | chr3_4:9115483-9115502 | Msa0488960:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3_4:9115491-9115510 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3_4:9115488-9115507 | Msa0488960:intron | 50.0% | |
| ATAACTAGCCGGCGGTGTTT+GGG | - | chr3_4:9116108-9116127 | None:intergenic | 50.0% | |
| AATAACTAGCCGGCGGTGTT+TGG | - | chr3_4:9116109-9116128 | None:intergenic | 50.0% | |
| CCTCCTTACTGATGCTTCTG+TGG | - | chr3_4:9116293-9116312 | None:intergenic | 50.0% | |
| !! | CCACAGAAGCATCAGTAAGG+AGG | + | chr3_4:9116290-9116309 | Msa0488960:intron | 50.0% |
| !!! | GCCTGCGTCACTGTTGTTTT+GGG | + | chr3_4:9116456-9116475 | Msa0488960:intron | 50.0% |
| ACCCAAAACAACAGTGACGC+AGG | - | chr3_4:9116460-9116479 | None:intergenic | 50.0% | |
| !! | CTCTTGCTTTTGCTCAGGTG+AGG | - | chr3_4:9116712-9116731 | None:intergenic | 50.0% |
| CTCACCTGAGCAAAAGCAAG+AGG | + | chr3_4:9116710-9116729 | Msa0488960:intron | 50.0% | |
| !! | GATGCCTCTTGCTTTTGCTC+AGG | - | chr3_4:9116717-9116736 | None:intergenic | 50.0% |
| TCTAAGAAGCTGACCCCATC+TGG | + | chr3_4:9116739-9116758 | Msa0488960:intron | 50.0% | |
| ! | ATAAGGCAAGGCACCAGATG+GGG | - | chr3_4:9116755-9116774 | None:intergenic | 50.0% |
| ! | CAATAAGGCAAGGCACCAGA+TGG | - | chr3_4:9116757-9116776 | None:intergenic | 50.0% |
| ! | GTGCCTTGCCTTATTGCCTT+GGG | + | chr3_4:9116761-9116780 | Msa0488960:intron | 50.0% |
| !! | CTGTAGACAAAGGCACCAAG+AGG | - | chr3_4:9116791-9116810 | None:intergenic | 50.0% |
| GGGGACACTATACAAGAGTG+AGG | - | chr3_4:9116833-9116852 | None:intergenic | 50.0% | |
| ! | ACATTCAAGGTGGTGGCCAA+AGG | + | chr3_4:9117063-9117082 | Msa0488960:intron | 50.0% |
| AAGGATCACCAGGCGAATTC+TGG | - | chr3_4:9117278-9117297 | None:intergenic | 50.0% | |
| GTGCCTTGTGTCAAGAACAC+AGG | + | chr3_4:9117325-9117344 | Msa0488960:CDS | 50.0% | |
| CTCCCTGTGTTCTTGACACA+AGG | - | chr3_4:9117331-9117350 | None:intergenic | 50.0% | |
| AACACAGGGAGATGAAGGGA+CGG | + | chr3_4:9117340-9117359 | Msa0488960:CDS | 50.0% | |
| CGGAGGAGGATTTACAATGG+TGG | - | chr3_4:9117391-9117410 | None:intergenic | 50.0% | |
| CACAGGGAACTCATCCCAAA+AGG | - | chr3_4:9117586-9117605 | None:intergenic | 50.0% | |
| GATTGCGGTGTAGTGTGGTG+TGG | - | chr3_4:9112827-9112846 | None:intergenic | 55.0% | |
| GTTGGCAGTTCCGAAGTGCA+TGG | + | chr3_4:9113931-9113950 | Msa0488960:intron | 55.0% | |
| ! | GGTGCATAGCTTTCGGGTAG+TGG | - | chr3_4:9113968-9113987 | None:intergenic | 55.0% |
| ! | GCAGGAGGTGCATAGCTTTC+GGG | - | chr3_4:9113974-9113993 | None:intergenic | 55.0% |
| ATCCAAGGCTCATCAGCAGG+AGG | - | chr3_4:9113989-9114008 | None:intergenic | 55.0% | |
| GTCATCCAAGGCTCATCAGC+AGG | - | chr3_4:9113992-9114011 | None:intergenic | 55.0% | |
| GCTGATGAGCCTTGGATGAC+TGG | + | chr3_4:9113992-9114011 | Msa0488960:CDS | 55.0% | |
| CTAAGAACCCCAAACACCGC+CGG | + | chr3_4:9116097-9116116 | Msa0488960:intron | 55.0% | |
| TAACTAGCCGGCGGTGTTTG+GGG | - | chr3_4:9116107-9116126 | None:intergenic | 55.0% | |
| !! | GGCCCACAGAAGCATCAGTA+AGG | + | chr3_4:9116287-9116306 | Msa0488960:intron | 55.0% |
| CTCTCCGGATCCCTAGCTAT+TGG | - | chr3_4:9116343-9116362 | None:intergenic | 55.0% | |
| !! | GGCCTGCGTCACTGTTGTTT+TGG | + | chr3_4:9116455-9116474 | Msa0488960:intron | 55.0% |
| ! | GGTGCCTTGCCTTATTGCCT+TGG | + | chr3_4:9116760-9116779 | Msa0488960:intron | 55.0% |
| GTGCCCAAGGCAATAAGGCA+AGG | - | chr3_4:9116767-9116786 | None:intergenic | 55.0% | |
| ! | GTGTTCACTGCTGCTTGCAC+TGG | + | chr3_4:9117301-9117320 | Msa0488960:CDS | 55.0% |
| GCGGTGTAGTGTGGTGTGGT+GGG | - | chr3_4:9112823-9112842 | None:intergenic | 60.0% | |
| TGCGGTGTAGTGTGGTGTGG+TGG | - | chr3_4:9112824-9112843 | None:intergenic | 60.0% | |
| CAGTGTCTCTGCGTCGTGTC+CGG | - | chr3_4:9113223-9113242 | None:intergenic | 60.0% | |
| CACCTCCTGCTGATGAGCCT+TGG | + | chr3_4:9113984-9114003 | Msa0488960:CDS | 60.0% | |
| GAGGCGTGCCCAAGGCAATA+AGG | - | chr3_4:9116772-9116791 | None:intergenic | 60.0% | |
| ATTGCCTTGGGCACGCCTCT+TGG | + | chr3_4:9116773-9116792 | Msa0488960:intron | 60.0% | |
| GGAGATGAAGGGACGGCTCT+CGG | + | chr3_4:9117347-9117366 | Msa0488960:CDS | 60.0% | |
| TCTGCGTCGTGTCCGGTGTC+TGG | - | chr3_4:9113216-9113235 | None:intergenic | 65.0% | |
| ! | GGCACCAAGAGGCGTGCCCA+AGG | - | chr3_4:9116780-9116799 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 9112772 | 9117685 | 9112772 | ID=Msa0488960;Name=Msa0488960 |
| chr3_4 | mRNA | 9112772 | 9117685 | 9112772 | ID=Msa0488960-mRNA-1;Parent=Msa0488960;Name=Msa0488960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=226|1|1|1|1|1|4|179|237 |
| chr3_4 | exon | 9112772 | 9113099 | 9112772 | ID=Msa0488960-mRNA-1:exon:3003;Parent=Msa0488960-mRNA-1 |
| chr3_4 | exon | 9113932 | 9114046 | 9113932 | ID=Msa0488960-mRNA-1:exon:3004;Parent=Msa0488960-mRNA-1 |
| chr3_4 | exon | 9114471 | 9114739 | 9114471 | ID=Msa0488960-mRNA-1:exon:3005;Parent=Msa0488960-mRNA-1 |
| chr3_4 | exon | 9117279 | 9117685 | 9117279 | ID=Msa0488960-mRNA-1:exon:3006;Parent=Msa0488960-mRNA-1 |
| chr3_4 | five_prime_UTR | 9112772 | 9112997 | 9112772 | ID=Msa0488960-mRNA-1:five_prime_utr;Parent=Msa0488960-mRNA-1 |
| chr3_4 | CDS | 9112998 | 9113099 | 9112998 | ID=Msa0488960-mRNA-1:cds;Parent=Msa0488960-mRNA-1 |
| chr3_4 | CDS | 9113932 | 9114046 | 9113932 | ID=Msa0488960-mRNA-1:cds;Parent=Msa0488960-mRNA-1 |
| chr3_4 | CDS | 9114471 | 9114739 | 9114471 | ID=Msa0488960-mRNA-1:cds;Parent=Msa0488960-mRNA-1 |
| chr3_4 | CDS | 9117279 | 9117506 | 9117279 | ID=Msa0488960-mRNA-1:cds;Parent=Msa0488960-mRNA-1 |
| chr3_4 | three_prime_UTR | 9117507 | 9117685 | 9117507 | ID=Msa0488960-mRNA-1:three_prime_utr;Parent=Msa0488960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
