AlfalfaGEDB | Msa0489840

M. sativa cultivar zhongmu-4 / Msa0489840

KEGG: -
GO: GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0489840	XP_024633784.1	99.242	132	1	0	1	132	1	132	4.15e-92	272

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0489840	sp\|A4FVI0\|ZSWM7_DANRE	37.692	130	73	4	7	131	8	134	1.54e-18	79.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0489840	A0A396IIP6	99.242	132	1	0	1	132	1	132	1.98e-92	272

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0240900	Msa0489840	0.805052	1.607674e-49	-8.615850e-47
Msa0317970	Msa0489840	0.811575	6.537075e-51	-8.615850e-47
Msa0320590	Msa0489840	0.803814	2.912399e-49	-8.615850e-47
Msa0489840	Msa0902510	0.801281	9.695256e-49	-8.615850e-47
Msa0489840	Msa0934140	0.808285	3.339249e-50	-8.615850e-47
Msa0489840	Msa1089450	0.807458	5.006380e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0489840	MtrunA17_Chr3g0080161	99.242	132	1	0	1	132	1	132	3.82e-96	272
Msa0489840	MtrunA17_Chr4g0022281	97.143	35	1	0	29	63	8	42	4.36e-19	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0489840	AT4G33925.1	67.424	132	43	0	1	132	1	132	9.20e-65	193
Msa0489840	AT4G33925.2	66.387	119	40	0	1	119	1	119	3.01e-57	174

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Find 27 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGACTTTGCTTTG+TGG	0.399607	3_4:+10526733	Msa0489840:three_prime_UTR
AATCTAATTCTAATGGCTTT+TGG	0.252855	3_4:-10526838	None:intergenic
ACCAGATTACATTTCTTATT+TGG	0.153151	3_4:+10525607	Msa0489840:intron
ACTAGAATAGTGGATCAAAG+AGG	0.694774	3_4:+10525649	Msa0489840:CDS
AGAGGTGTTAAGAGGATTTC+TGG	0.200361	3_4:+10525667	Msa0489840:CDS
AGGATCATACGTCGAAGTCA+AGG	0.608072	3_4:+10526649	Msa0489840:CDS
AGGATTTCTGGTGACCCTAG+TGG	0.611916	3_4:+10525679	Msa0489840:CDS
ATCATAGAAGAAAGAATAAC+AGG	0.376490	3_4:-10526430	None:intergenic
ATTTGGTAGCAGATCAAGTG+TGG	0.614557	3_4:+10525328	Msa0489840:CDS
CAAATTGAATCTACACAAAC+TGG	0.395068	3_4:+10525354	Msa0489840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTGAATCTACACAAAC+TGG	+	chr3_4:10525354-10525373	Msa0489840:CDS	30.0%
TTGTTTATTGTCTGCATTTG+GGG	+	chr3_4:10525762-10525781	Msa0489840:intron	30.0%
AGGCAAAATCAATTCTACTT+CGG	+	chr3_4:10526098-10526117	Msa0489840:intron	30.0%
CGCATCACAATTTGAATTAA+GGG	-	chr3_4:10526332-10526351	None:intergenic	30.0%
AAAACAAAGACTTTGCTTTG+TGG	+	chr3_4:10526733-10526752	Msa0489840:three_prime_UTR	30.0%
TAAAAAGGGTGAGAATAGAT+TGG	+	chr3_4:10526790-10526809	Msa0489840:three_prime_UTR	30.0%
CAAATTGAATCTACACAAAC+TGG	+	chr3_4:10525354-10525373	Msa0489840:CDS	30.0%
TTGTTTATTGTCTGCATTTG+GGG	+	chr3_4:10525762-10525781	Msa0489840:intron	30.0%
AGGCAAAATCAATTCTACTT+CGG	+	chr3_4:10526098-10526117	Msa0489840:intron	30.0%
CGCATCACAATTTGAATTAA+GGG	-	chr3_4:10526332-10526351	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	10525296	10526857	10525296	ID=Msa0489840;Name=Msa0489840
chr3_4	mRNA	10525296	10526857	10525296	ID=Msa0489840-mRNA-1;Parent=Msa0489840;Name=Msa0489840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=19\|1\|1\|1\|1\|1\|5\|145\|132
chr3_4	exon	10525296	10525375	10525296	ID=Msa0489840-mRNA-1:exon:3406;Parent=Msa0489840-mRNA-1
chr3_4	exon	10525484	10525505	10525484	ID=Msa0489840-mRNA-1:exon:3407;Parent=Msa0489840-mRNA-1
chr3_4	exon	10525612	10525717	10525612	ID=Msa0489840-mRNA-1:exon:3408;Parent=Msa0489840-mRNA-1
chr3_4	exon	10526372	10526479	10526372	ID=Msa0489840-mRNA-1:exon:3409;Parent=Msa0489840-mRNA-1
chr3_4	exon	10526611	10526857	10526611	ID=Msa0489840-mRNA-1:exon:3410;Parent=Msa0489840-mRNA-1
chr3_4	five_prime_UTR	10525296	10525314	10525296	ID=Msa0489840-mRNA-1:five_prime_utr;Parent=Msa0489840-mRNA-1
chr3_4	CDS	10525315	10525375	10525315	ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1
chr3_4	CDS	10525484	10525505	10525484	ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1
chr3_4	CDS	10525612	10525717	10525612	ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1
chr3_4	CDS	10526372	10526479	10526372	ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1
chr3_4	CDS	10526611	10526712	10526611	ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1
chr3_4	three_prime_UTR	10526713	10526857	10526713	ID=Msa0489840-mRNA-1:three_prime_utr;Parent=Msa0489840-mRNA-1

Gene Sequence

>Msa0489840

ATGAGTGCAAGTAATTTGGTAGCAGATCAAGTGTGGAAGCAAATTGAATCTACACAAACTGTGAATGATGATCAACTCTATATATTACATTTCTTATTTGGTAAGAATTTTGAGGGAGCTACTAGAATAGTGGATCAAAGAGGTGTTAAGAGGATTTCTGGTGACCCTAGTGGAAGGTTTATCTTTCAGGTTACAGGGGAATCCAGGAAAAAAGACCAGTATCTGTGTTTTGCTGAAAACTTTTGTGCCTGTTATTCTTTCTTCTATGATGTTGTCAACAGAGGGGAGCAACTCTGTTGCAAACATCAATTAGCTGCAAGACTCGCTGCATCATTAGGATCATACGTCGAAGTCAAGGTATCTGATGAGGAATTAGCTTTGTTGCTATCTAAAATATAG

Protein sequence

>Msa0489840

MSASNLVADQVWKQIESTQTVNDDQLYILHFLFGKNFEGATRIVDQRGVKRISGDPSGRFIFQVTGESRKKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARLAASLGSYVEVKVSDEELALLLSKI*