Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489840 | XP_024633784.1 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 4.15e-92 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489840 | sp|A4FVI0|ZSWM7_DANRE | 37.692 | 130 | 73 | 4 | 7 | 131 | 8 | 134 | 1.54e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489840 | A0A396IIP6 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 1.98e-92 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0240900 | Msa0489840 | 0.805052 | 1.607674e-49 | -8.615850e-47 |
| Msa0317970 | Msa0489840 | 0.811575 | 6.537075e-51 | -8.615850e-47 |
| Msa0320590 | Msa0489840 | 0.803814 | 2.912399e-49 | -8.615850e-47 |
| Msa0489840 | Msa0902510 | 0.801281 | 9.695256e-49 | -8.615850e-47 |
| Msa0489840 | Msa0934140 | 0.808285 | 3.339249e-50 | -8.615850e-47 |
| Msa0489840 | Msa1089450 | 0.807458 | 5.006380e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489840 | MtrunA17_Chr3g0080161 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 3.82e-96 | 272 |
| Msa0489840 | MtrunA17_Chr4g0022281 | 97.143 | 35 | 1 | 0 | 29 | 63 | 8 | 42 | 4.36e-19 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489840 | AT4G33925.1 | 67.424 | 132 | 43 | 0 | 1 | 132 | 1 | 132 | 9.20e-65 | 193 |
| Msa0489840 | AT4G33925.2 | 66.387 | 119 | 40 | 0 | 1 | 119 | 1 | 119 | 3.01e-57 | 174 |
Find 27 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGGAAGGTTTATCTTTC+AGG | 0.114697 | 3_4:+10525696 | Msa0489840:CDS |
| ACCAGATTACATTTCTTATT+TGG | 0.153151 | 3_4:+10525607 | Msa0489840:intron |
| TCTCCCTTTGTTTAGGTTAC+AGG | 0.191040 | 3_4:+10526357 | Msa0489840:intron |
| AGAGGTGTTAAGAGGATTTC+TGG | 0.200361 | 3_4:+10525667 | Msa0489840:CDS |
| AATCTAATTCTAATGGCTTT+TGG | 0.252855 | 3_4:-10526838 | None:intergenic |
| GAGAATGAGTGCAAGTAATT+TGG | 0.305236 | 3_4:+10525311 | Msa0489840:exon |
| GCAAGACTCGCTGCATCATT+AGG | 0.352521 | 3_4:+10526629 | Msa0489840:CDS |
| CTCCCTTTGTTTAGGTTACA+GGG | 0.369913 | 3_4:+10526358 | Msa0489840:intron |
| ATCATAGAAGAAAGAATAAC+AGG | 0.376490 | 3_4:-10526430 | None:intergenic |
| CAAATTGAATCTACACAAAC+TGG | 0.395068 | 3_4:+10525354 | Msa0489840:CDS |
| AAAACAAAGACTTTGCTTTG+TGG | 0.399607 | 3_4:+10526733 | Msa0489840:three_prime_UTR |
| TTTCAGCAAAACACAGATAC+TGG | 0.406479 | 3_4:-10526398 | None:intergenic |
| TTTAGGTTACAGGGGAATCC+AGG | 0.463070 | 3_4:+10526367 | Msa0489840:intron |
| TGAGGGAGCTACTAGAATAG+TGG | 0.477865 | 3_4:+10525639 | Msa0489840:CDS |
| TGGATCAAAGAGGTGTTAAG+AGG | 0.502699 | 3_4:+10525659 | Msa0489840:CDS |
| TCTATGATGTTGTCAACAGA+GGG | 0.540121 | 3_4:+10526445 | Msa0489840:CDS |
| TGAAAGATAAACCTTCCACT+AGG | 0.563754 | 3_4:-10525694 | None:intergenic |
| TTCTATGATGTTGTCAACAG+AGG | 0.568989 | 3_4:+10526444 | Msa0489840:CDS |
| AGGATCATACGTCGAAGTCA+AGG | 0.608072 | 3_4:+10526649 | Msa0489840:CDS |
| TTTCTGGTGACCCTAGTGGA+AGG | 0.611132 | 3_4:+10525683 | Msa0489840:CDS |
| TCCCTTTGTTTAGGTTACAG+GGG | 0.611496 | 3_4:+10526359 | Msa0489840:intron |
| AGGATTTCTGGTGACCCTAG+TGG | 0.611916 | 3_4:+10525679 | Msa0489840:CDS |
| CGAAGTCAAGGTATCTGATG+AGG | 0.612908 | 3_4:+10526661 | Msa0489840:CDS |
| ATTTGGTAGCAGATCAAGTG+TGG | 0.614557 | 3_4:+10525328 | Msa0489840:CDS |
| GAAAGATAAACCTTCCACTA+GGG | 0.628597 | 3_4:-10525693 | None:intergenic |
| ACTAGAATAGTGGATCAAAG+AGG | 0.694774 | 3_4:+10525649 | Msa0489840:CDS |
| CTATGATGTTGTCAACAGAG+GGG | 0.760944 | 3_4:+10526446 | Msa0489840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATTAAAGCAAAAAAA+GGG | - | chr3_4:10525421-10525440 | None:intergenic | 15.0% |
| !! | ATTGAAATTAAAGCAAAAAA+AGG | - | chr3_4:10525422-10525441 | None:intergenic | 15.0% |
| !! | AAACAAAAAAAGATGTAAAA+GGG | - | chr3_4:10525524-10525543 | None:intergenic | 15.0% |
| !! | AAAACAAAAAAAGATGTAAA+AGG | - | chr3_4:10525525-10525544 | None:intergenic | 15.0% |
| !! | TTGAAATTAAAGCAAAAAAA+GGG | - | chr3_4:10525421-10525440 | None:intergenic | 15.0% |
| !! | ATTGAAATTAAAGCAAAAAA+AGG | - | chr3_4:10525422-10525441 | None:intergenic | 15.0% |
| !! | AAACAAAAAAAGATGTAAAA+GGG | - | chr3_4:10525524-10525543 | None:intergenic | 15.0% |
| !! | AAAACAAAAAAAGATGTAAA+AGG | - | chr3_4:10525525-10525544 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTTTGTAGCAT+AGG | + | chr3_4:10525535-10525554 | Msa0489840:intron | 20.0% |
| !!! | TTATTTGGTAAGAATTTTGA+GGG | + | chr3_4:10525622-10525641 | Msa0489840:CDS | 20.0% |
| !! | TTTAAACTACTCAATTGAAA+TGG | - | chr3_4:10525789-10525808 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTTGTAGCAT+AGG | + | chr3_4:10525535-10525554 | Msa0489840:intron | 20.0% |
| !!! | TTATTTGGTAAGAATTTTGA+GGG | + | chr3_4:10525622-10525641 | Msa0489840:CDS | 20.0% |
| !! | TTTAAACTACTCAATTGAAA+TGG | - | chr3_4:10525789-10525808 | None:intergenic | 20.0% |
| ! | ACTGTGACATGAAAATAAAA+AGG | - | chr3_4:10525465-10525484 | None:intergenic | 25.0% |
| !! | GTTTGACATTTTATGTTTGT+TGG | + | chr3_4:10525568-10525587 | Msa0489840:intron | 25.0% |
| ! | ACCAGATTACATTTCTTATT+TGG | + | chr3_4:10525607-10525626 | Msa0489840:intron | 25.0% |
| ! | ACCAAATAAGAAATGTAATC+TGG | - | chr3_4:10525611-10525630 | None:intergenic | 25.0% |
| !! | CTTATTTGGTAAGAATTTTG+AGG | + | chr3_4:10525621-10525640 | Msa0489840:CDS | 25.0% |
| ! | CAGACAATAAACAAAAACTA+AGG | - | chr3_4:10525756-10525775 | None:intergenic | 25.0% |
| !!! | TTTTGTTTATTGTCTGCATT+TGG | + | chr3_4:10525760-10525779 | Msa0489840:intron | 25.0% |
| ! | TTTGTTTATTGTCTGCATTT+GGG | + | chr3_4:10525761-10525780 | Msa0489840:intron | 25.0% |
| !! | CAATTGAGTAGTTTAAAACT+TGG | + | chr3_4:10525792-10525811 | Msa0489840:intron | 25.0% |
| !! | TGAGTTGAACAATAAATTAG+TGG | + | chr3_4:10526011-10526030 | Msa0489840:intron | 25.0% |
| ! | TGGCTAAAAATCAAATATAG+AGG | + | chr3_4:10526031-10526050 | Msa0489840:intron | 25.0% |
| !!! | TGTATGTTTGATTTCACTTT+TGG | - | chr3_4:10526166-10526185 | None:intergenic | 25.0% |
| ! | ATCATAGAAGAAAGAATAAC+AGG | - | chr3_4:10526433-10526452 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAGACAACA+AGG | - | chr3_4:10526501-10526520 | None:intergenic | 25.0% |
| ! | ACTGTGACATGAAAATAAAA+AGG | - | chr3_4:10525465-10525484 | None:intergenic | 25.0% |
| !! | GTTTGACATTTTATGTTTGT+TGG | + | chr3_4:10525568-10525587 | Msa0489840:intron | 25.0% |
| ! | ACCAGATTACATTTCTTATT+TGG | + | chr3_4:10525607-10525626 | Msa0489840:intron | 25.0% |
| ! | ACCAAATAAGAAATGTAATC+TGG | - | chr3_4:10525611-10525630 | None:intergenic | 25.0% |
| !! | CTTATTTGGTAAGAATTTTG+AGG | + | chr3_4:10525621-10525640 | Msa0489840:CDS | 25.0% |
| ! | CAGACAATAAACAAAAACTA+AGG | - | chr3_4:10525756-10525775 | None:intergenic | 25.0% |
| !!! | TTTTGTTTATTGTCTGCATT+TGG | + | chr3_4:10525760-10525779 | Msa0489840:intron | 25.0% |
| ! | TTTGTTTATTGTCTGCATTT+GGG | + | chr3_4:10525761-10525780 | Msa0489840:intron | 25.0% |
| !! | CAATTGAGTAGTTTAAAACT+TGG | + | chr3_4:10525792-10525811 | Msa0489840:intron | 25.0% |
| !! | TGAGTTGAACAATAAATTAG+TGG | + | chr3_4:10526011-10526030 | Msa0489840:intron | 25.0% |
| ! | TGGCTAAAAATCAAATATAG+AGG | + | chr3_4:10526031-10526050 | Msa0489840:intron | 25.0% |
| !!! | TGTATGTTTGATTTCACTTT+TGG | - | chr3_4:10526166-10526185 | None:intergenic | 25.0% |
| ! | ATCATAGAAGAAAGAATAAC+AGG | - | chr3_4:10526433-10526452 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAGACAACA+AGG | - | chr3_4:10526501-10526520 | None:intergenic | 25.0% |
| CAAATTGAATCTACACAAAC+TGG | + | chr3_4:10525354-10525373 | Msa0489840:CDS | 30.0% | |
| ! | AAAAGGTGCAACAAAAGTTA+GGG | - | chr3_4:10525448-10525467 | None:intergenic | 30.0% |
| ! | AAAAAGGTGCAACAAAAGTT+AGG | - | chr3_4:10525449-10525468 | None:intergenic | 30.0% |
| TTGTTTATTGTCTGCATTTG+GGG | + | chr3_4:10525762-10525781 | Msa0489840:intron | 30.0% | |
| ! | CTTCAAGTTAGAATCAATTC+TGG | + | chr3_4:10526075-10526094 | Msa0489840:intron | 30.0% |
| AGGCAAAATCAATTCTACTT+CGG | + | chr3_4:10526098-10526117 | Msa0489840:intron | 30.0% | |
| !! | CAAATTGATTTTGACAGGTT+TGG | - | chr3_4:10526129-10526148 | None:intergenic | 30.0% |
| !! | ATGTTTGATTTCACTTTTGG+AGG | - | chr3_4:10526163-10526182 | None:intergenic | 30.0% |
| ! | TGTCTATGTTTGCTAATAGT+TGG | + | chr3_4:10526244-10526263 | Msa0489840:intron | 30.0% |
| ! | CAAATTTTCATGACAGTGTT+AGG | + | chr3_4:10526295-10526314 | Msa0489840:intron | 30.0% |
| CGCATCACAATTTGAATTAA+GGG | - | chr3_4:10526332-10526351 | None:intergenic | 30.0% | |
| AAAACAAAGACTTTGCTTTG+TGG | + | chr3_4:10526733-10526752 | Msa0489840:three_prime_UTR | 30.0% | |
| ! | GACAAAGAACATTTTGTTAC+CGG | + | chr3_4:10526767-10526786 | Msa0489840:three_prime_UTR | 30.0% |
| ! | ACATTTTGTTACCGGTAAAA+AGG | + | chr3_4:10526775-10526794 | Msa0489840:three_prime_UTR | 30.0% |
| ! | CATTTTGTTACCGGTAAAAA+GGG | + | chr3_4:10526776-10526795 | Msa0489840:three_prime_UTR | 30.0% |
| TAAAAAGGGTGAGAATAGAT+TGG | + | chr3_4:10526790-10526809 | Msa0489840:three_prime_UTR | 30.0% | |
| CAAATTGAATCTACACAAAC+TGG | + | chr3_4:10525354-10525373 | Msa0489840:CDS | 30.0% | |
| ! | AAAAGGTGCAACAAAAGTTA+GGG | - | chr3_4:10525448-10525467 | None:intergenic | 30.0% |
| ! | AAAAAGGTGCAACAAAAGTT+AGG | - | chr3_4:10525449-10525468 | None:intergenic | 30.0% |
| TTGTTTATTGTCTGCATTTG+GGG | + | chr3_4:10525762-10525781 | Msa0489840:intron | 30.0% | |
| ! | CTTCAAGTTAGAATCAATTC+TGG | + | chr3_4:10526075-10526094 | Msa0489840:intron | 30.0% |
| AGGCAAAATCAATTCTACTT+CGG | + | chr3_4:10526098-10526117 | Msa0489840:intron | 30.0% | |
| !! | CAAATTGATTTTGACAGGTT+TGG | - | chr3_4:10526129-10526148 | None:intergenic | 30.0% |
| !! | ATGTTTGATTTCACTTTTGG+AGG | - | chr3_4:10526163-10526182 | None:intergenic | 30.0% |
| ! | TGTCTATGTTTGCTAATAGT+TGG | + | chr3_4:10526244-10526263 | Msa0489840:intron | 30.0% |
| ! | CAAATTTTCATGACAGTGTT+AGG | + | chr3_4:10526295-10526314 | Msa0489840:intron | 30.0% |
| CGCATCACAATTTGAATTAA+GGG | - | chr3_4:10526332-10526351 | None:intergenic | 30.0% | |
| AAAACAAAGACTTTGCTTTG+TGG | + | chr3_4:10526733-10526752 | Msa0489840:three_prime_UTR | 30.0% | |
| ! | GACAAAGAACATTTTGTTAC+CGG | + | chr3_4:10526767-10526786 | Msa0489840:three_prime_UTR | 30.0% |
| ! | ACATTTTGTTACCGGTAAAA+AGG | + | chr3_4:10526775-10526794 | Msa0489840:three_prime_UTR | 30.0% |
| ! | CATTTTGTTACCGGTAAAAA+GGG | + | chr3_4:10526776-10526795 | Msa0489840:three_prime_UTR | 30.0% |
| TAAAAAGGGTGAGAATAGAT+TGG | + | chr3_4:10526790-10526809 | Msa0489840:three_prime_UTR | 30.0% | |
| GAGAATGAGTGCAAGTAATT+TGG | + | chr3_4:10525311-10525330 | Msa0489840:exon | 35.0% | |
| !! | ACTAGAATAGTGGATCAAAG+AGG | + | chr3_4:10525649-10525668 | Msa0489840:CDS | 35.0% |
| GAAAGATAAACCTTCCACTA+GGG | - | chr3_4:10525696-10525715 | None:intergenic | 35.0% | |
| TGAAAGATAAACCTTCCACT+AGG | - | chr3_4:10525697-10525716 | None:intergenic | 35.0% | |
| TAGTGGAAGGTTTATCTTTC+AGG | + | chr3_4:10525696-10525715 | Msa0489840:CDS | 35.0% | |
| ! | ATGCCTTCAATCTAAAGTGT+CGG | - | chr3_4:10525884-10525903 | None:intergenic | 35.0% |
| CAAGTTAGAATCAATTCTGG+AGG | + | chr3_4:10526078-10526097 | Msa0489840:intron | 35.0% | |
| !! | GGCATCAAATTGATTTTGAC+AGG | - | chr3_4:10526134-10526153 | None:intergenic | 35.0% |
| GCGCATCACAATTTGAATTA+AGG | - | chr3_4:10526333-10526352 | None:intergenic | 35.0% | |
| TTTCAGCAAAACACAGATAC+TGG | - | chr3_4:10526401-10526420 | None:intergenic | 35.0% | |
| TTCTATGATGTTGTCAACAG+AGG | + | chr3_4:10526444-10526463 | Msa0489840:CDS | 35.0% | |
| TCTATGATGTTGTCAACAGA+GGG | + | chr3_4:10526445-10526464 | Msa0489840:CDS | 35.0% | |
| ! | AGACAACAAGGAAGTGTATA+TGG | - | chr3_4:10526489-10526508 | None:intergenic | 35.0% |
| ! | TCTATTCTCACCCTTTTTAC+CGG | - | chr3_4:10526789-10526808 | None:intergenic | 35.0% |
| GAGAATGAGTGCAAGTAATT+TGG | + | chr3_4:10525311-10525330 | Msa0489840:exon | 35.0% | |
| !! | ACTAGAATAGTGGATCAAAG+AGG | + | chr3_4:10525649-10525668 | Msa0489840:CDS | 35.0% |
| GAAAGATAAACCTTCCACTA+GGG | - | chr3_4:10525696-10525715 | None:intergenic | 35.0% | |
| TGAAAGATAAACCTTCCACT+AGG | - | chr3_4:10525697-10525716 | None:intergenic | 35.0% | |
| TAGTGGAAGGTTTATCTTTC+AGG | + | chr3_4:10525696-10525715 | Msa0489840:CDS | 35.0% | |
| ! | ATGCCTTCAATCTAAAGTGT+CGG | - | chr3_4:10525884-10525903 | None:intergenic | 35.0% |
| CAAGTTAGAATCAATTCTGG+AGG | + | chr3_4:10526078-10526097 | Msa0489840:intron | 35.0% | |
| !! | GGCATCAAATTGATTTTGAC+AGG | - | chr3_4:10526134-10526153 | None:intergenic | 35.0% |
| GCGCATCACAATTTGAATTA+AGG | - | chr3_4:10526333-10526352 | None:intergenic | 35.0% | |
| TTTCAGCAAAACACAGATAC+TGG | - | chr3_4:10526401-10526420 | None:intergenic | 35.0% | |
| TTCTATGATGTTGTCAACAG+AGG | + | chr3_4:10526444-10526463 | Msa0489840:CDS | 35.0% | |
| TCTATGATGTTGTCAACAGA+GGG | + | chr3_4:10526445-10526464 | Msa0489840:CDS | 35.0% | |
| ! | AGACAACAAGGAAGTGTATA+TGG | - | chr3_4:10526489-10526508 | None:intergenic | 35.0% |
| ! | TCTATTCTCACCCTTTTTAC+CGG | - | chr3_4:10526789-10526808 | None:intergenic | 35.0% |
| ! | ATTTGGTAGCAGATCAAGTG+TGG | + | chr3_4:10525328-10525347 | Msa0489840:CDS | 40.0% |
| !! | TGGATCAAAGAGGTGTTAAG+AGG | + | chr3_4:10525659-10525678 | Msa0489840:CDS | 40.0% |
| !! | AGAGGTGTTAAGAGGATTTC+TGG | + | chr3_4:10525667-10525686 | Msa0489840:CDS | 40.0% |
| !! | TTTCACTTTTGGAGGAGTCA+AGG | - | chr3_4:10526155-10526174 | None:intergenic | 40.0% |
| AGCAAACATAGACACGAACA+CGG | - | chr3_4:10526238-10526257 | None:intergenic | 40.0% | |
| ! | CGCATATTCTCCCTTTGTTT+AGG | + | chr3_4:10526350-10526369 | Msa0489840:intron | 40.0% |
| ! | TCTCCCTTTGTTTAGGTTAC+AGG | + | chr3_4:10526357-10526376 | Msa0489840:intron | 40.0% |
| ! | CTCCCTTTGTTTAGGTTACA+GGG | + | chr3_4:10526358-10526377 | Msa0489840:intron | 40.0% |
| ! | TCCCTTTGTTTAGGTTACAG+GGG | + | chr3_4:10526359-10526378 | Msa0489840:intron | 40.0% |
| TCCCCTGTAACCTAAACAAA+GGG | - | chr3_4:10526363-10526382 | None:intergenic | 40.0% | |
| TTCCCCTGTAACCTAAACAA+AGG | - | chr3_4:10526364-10526383 | None:intergenic | 40.0% | |
| !!! | CAGATACTGGTCTTTTTTCC+TGG | - | chr3_4:10526388-10526407 | None:intergenic | 40.0% |
| CTATGATGTTGTCAACAGAG+GGG | + | chr3_4:10526446-10526465 | Msa0489840:CDS | 40.0% | |
| ! | ATTTGGTAGCAGATCAAGTG+TGG | + | chr3_4:10525328-10525347 | Msa0489840:CDS | 40.0% |
| !! | TGGATCAAAGAGGTGTTAAG+AGG | + | chr3_4:10525659-10525678 | Msa0489840:CDS | 40.0% |
| !! | AGAGGTGTTAAGAGGATTTC+TGG | + | chr3_4:10525667-10525686 | Msa0489840:CDS | 40.0% |
| !! | TTTCACTTTTGGAGGAGTCA+AGG | - | chr3_4:10526155-10526174 | None:intergenic | 40.0% |
| AGCAAACATAGACACGAACA+CGG | - | chr3_4:10526238-10526257 | None:intergenic | 40.0% | |
| ! | CGCATATTCTCCCTTTGTTT+AGG | + | chr3_4:10526350-10526369 | Msa0489840:intron | 40.0% |
| ! | TCTCCCTTTGTTTAGGTTAC+AGG | + | chr3_4:10526357-10526376 | Msa0489840:intron | 40.0% |
| ! | CTCCCTTTGTTTAGGTTACA+GGG | + | chr3_4:10526358-10526377 | Msa0489840:intron | 40.0% |
| ! | TCCCTTTGTTTAGGTTACAG+GGG | + | chr3_4:10526359-10526378 | Msa0489840:intron | 40.0% |
| TCCCCTGTAACCTAAACAAA+GGG | - | chr3_4:10526363-10526382 | None:intergenic | 40.0% | |
| TTCCCCTGTAACCTAAACAA+AGG | - | chr3_4:10526364-10526383 | None:intergenic | 40.0% | |
| !!! | CAGATACTGGTCTTTTTTCC+TGG | - | chr3_4:10526388-10526407 | None:intergenic | 40.0% |
| CTATGATGTTGTCAACAGAG+GGG | + | chr3_4:10526446-10526465 | Msa0489840:CDS | 40.0% | |
| TGAGGGAGCTACTAGAATAG+TGG | + | chr3_4:10525639-10525658 | Msa0489840:CDS | 45.0% | |
| !! | AAAGTGTCGGTGCTACACTT+CGG | - | chr3_4:10525871-10525890 | None:intergenic | 45.0% |
| ! | GCACCGACACTTTAGATTGA+AGG | + | chr3_4:10525878-10525897 | Msa0489840:intron | 45.0% |
| GTCTAGTGTCCAACACTTGT+CGG | + | chr3_4:10525904-10525923 | Msa0489840:intron | 45.0% | |
| TGTTTGACACCGACAAGTGT+TGG | - | chr3_4:10525916-10525935 | None:intergenic | 45.0% | |
| ! | TTTAGGTTACAGGGGAATCC+AGG | + | chr3_4:10526367-10526386 | Msa0489840:intron | 45.0% |
| AGGATCATACGTCGAAGTCA+AGG | + | chr3_4:10526649-10526668 | Msa0489840:CDS | 45.0% | |
| ! | CGAAGTCAAGGTATCTGATG+AGG | + | chr3_4:10526661-10526680 | Msa0489840:CDS | 45.0% |
| TGAGGGAGCTACTAGAATAG+TGG | + | chr3_4:10525639-10525658 | Msa0489840:CDS | 45.0% | |
| !! | AAAGTGTCGGTGCTACACTT+CGG | - | chr3_4:10525871-10525890 | None:intergenic | 45.0% |
| ! | GCACCGACACTTTAGATTGA+AGG | + | chr3_4:10525878-10525897 | Msa0489840:intron | 45.0% |
| GTCTAGTGTCCAACACTTGT+CGG | + | chr3_4:10525904-10525923 | Msa0489840:intron | 45.0% | |
| TGTTTGACACCGACAAGTGT+TGG | - | chr3_4:10525916-10525935 | None:intergenic | 45.0% | |
| ! | TTTAGGTTACAGGGGAATCC+AGG | + | chr3_4:10526367-10526386 | Msa0489840:intron | 45.0% |
| AGGATCATACGTCGAAGTCA+AGG | + | chr3_4:10526649-10526668 | Msa0489840:CDS | 45.0% | |
| ! | CGAAGTCAAGGTATCTGATG+AGG | + | chr3_4:10526661-10526680 | Msa0489840:CDS | 45.0% |
| !! | TTTCTTAATAAAAAATAAAA+GGG | - | chr3_4:10526716-10526735 | None:intergenic | 5.0% |
| !!! | TTTTCTTAATAAAAAATAAA+AGG | - | chr3_4:10526717-10526736 | None:intergenic | 5.0% |
| !! | TTTCTTAATAAAAAATAAAA+GGG | - | chr3_4:10526716-10526735 | None:intergenic | 5.0% |
| !!! | TTTTCTTAATAAAAAATAAA+AGG | - | chr3_4:10526717-10526736 | None:intergenic | 5.0% |
| !! | AGGATTTCTGGTGACCCTAG+TGG | + | chr3_4:10525679-10525698 | Msa0489840:CDS | 50.0% |
| ! | TTTCTGGTGACCCTAGTGGA+AGG | + | chr3_4:10525683-10525702 | Msa0489840:CDS | 50.0% |
| GCAAGACTCGCTGCATCATT+AGG | + | chr3_4:10526629-10526648 | Msa0489840:CDS | 50.0% | |
| !! | AGGATTTCTGGTGACCCTAG+TGG | + | chr3_4:10525679-10525698 | Msa0489840:CDS | 50.0% |
| ! | TTTCTGGTGACCCTAGTGGA+AGG | + | chr3_4:10525683-10525702 | Msa0489840:CDS | 50.0% |
| GCAAGACTCGCTGCATCATT+AGG | + | chr3_4:10526629-10526648 | Msa0489840:CDS | 50.0% | |
| GAGGGGAGCAACTCTGTGTA+AGG | + | chr3_4:10526463-10526482 | Msa0489840:intron | 55.0% | |
| GAGGGGAGCAACTCTGTGTA+AGG | + | chr3_4:10526463-10526482 | Msa0489840:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10525296 | 10526857 | 10525296 | ID=Msa0489840;Name=Msa0489840 |
| chr3_4 | mRNA | 10525296 | 10526857 | 10525296 | ID=Msa0489840-mRNA-1;Parent=Msa0489840;Name=Msa0489840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=19|1|1|1|1|1|5|145|132 |
| chr3_4 | exon | 10525296 | 10525375 | 10525296 | ID=Msa0489840-mRNA-1:exon:3406;Parent=Msa0489840-mRNA-1 |
| chr3_4 | exon | 10525484 | 10525505 | 10525484 | ID=Msa0489840-mRNA-1:exon:3407;Parent=Msa0489840-mRNA-1 |
| chr3_4 | exon | 10525612 | 10525717 | 10525612 | ID=Msa0489840-mRNA-1:exon:3408;Parent=Msa0489840-mRNA-1 |
| chr3_4 | exon | 10526372 | 10526479 | 10526372 | ID=Msa0489840-mRNA-1:exon:3409;Parent=Msa0489840-mRNA-1 |
| chr3_4 | exon | 10526611 | 10526857 | 10526611 | ID=Msa0489840-mRNA-1:exon:3410;Parent=Msa0489840-mRNA-1 |
| chr3_4 | five_prime_UTR | 10525296 | 10525314 | 10525296 | ID=Msa0489840-mRNA-1:five_prime_utr;Parent=Msa0489840-mRNA-1 |
| chr3_4 | CDS | 10525315 | 10525375 | 10525315 | ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1 |
| chr3_4 | CDS | 10525484 | 10525505 | 10525484 | ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1 |
| chr3_4 | CDS | 10525612 | 10525717 | 10525612 | ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1 |
| chr3_4 | CDS | 10526372 | 10526479 | 10526372 | ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1 |
| chr3_4 | CDS | 10526611 | 10526712 | 10526611 | ID=Msa0489840-mRNA-1:cds;Parent=Msa0489840-mRNA-1 |
| chr3_4 | three_prime_UTR | 10526713 | 10526857 | 10526713 | ID=Msa0489840-mRNA-1:three_prime_utr;Parent=Msa0489840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
