AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 13 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATGAGCAAGATGATAT+TGG 0.325823 6_1:-100819460 Msa0902510:CDS
ATTATGAAGATCTCAGGATT+TGG 0.350247 6_1:-100818978 Msa0902510:CDS
TTTGTAACTACATCAAATTT+CGG 0.398153 6_1:-100816304 Msa0902510:CDS
TTTGTGTACAGTTTCTTTCA+AGG 0.399386 6_1:-100819497 Msa0902510:intron
GAGCAATTGCAATTTGCAAC+AGG 0.425247 6_1:-100818956 Msa0902510:intron
ACATCAAATTTCGGAAGCTT+AGG 0.428759 6_1:-100816295 Msa0902510:CDS
TTTCTTTCAAGGAGAAATCA+AGG 0.441805 6_1:-100819486 Msa0902510:CDS
AAGCTTAGGCTTGGAGACTC+TGG 0.446911 6_1:-100816281 Msa0902510:CDS
GGACAAATTATGAAGATCTC+AGG 0.485976 6_1:-100818984 Msa0902510:CDS
AAATTTCGGAAGCTTAGGCT+TGG 0.493929 6_1:-100816290 Msa0902510:CDS
CATGTTGAAGCTGCAGACAT+AGG 0.505025 6_1:-100819432 Msa0902510:intron
CTGGATTGAAAGCATGCCAC+TGG 0.549665 6_1:-100816262 Msa0902510:CDS
TGTGTATCTAGTAGTTCCAG+TGG 0.635796 6_1:+100816246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTTTGTAAATTATAA+TGG - chr6_1:100817256-100817275 Msa0902510:intron 10.0%
!!! TTAGTTTTGTAAATTATAAT+GGG - chr6_1:100817257-100817276 Msa0902510:intron 10.0%
!! ATTATAAGAAATTATGAATA+GGG + chr6_1:100818572-100818591 None:intergenic 10.0%
!! TATTATAAGAAATTATGAAT+AGG + chr6_1:100818573-100818592 None:intergenic 10.0%
!!! TTTTAAATTGAATCTTTAAA+AGG - chr6_1:100818899-100818918 Msa0902510:intron 10.0%
!! TTTAATCTTATATTATGTAT+AGG - chr6_1:100819103-100819122 Msa0902510:intron 10.0%
!!! TTTAGTTTTGTAAATTATAA+TGG - chr6_1:100817256-100817275 Msa0902510:intron 10.0%
!!! TTAGTTTTGTAAATTATAAT+GGG - chr6_1:100817257-100817276 Msa0902510:intron 10.0%
!! ATTATAAGAAATTATGAATA+GGG + chr6_1:100818572-100818591 None:intergenic 10.0%
!! TATTATAAGAAATTATGAAT+AGG + chr6_1:100818573-100818592 None:intergenic 10.0%
!!! TTTTAAATTGAATCTTTAAA+AGG - chr6_1:100818899-100818918 Msa0902510:intron 10.0%
!! TTTAATCTTATATTATGTAT+AGG - chr6_1:100819103-100819122 Msa0902510:intron 10.0%
!! TAAACAAATTTATATCTTCT+TGG + chr6_1:100816390-100816409 None:intergenic 15.0%
!! ATATTCATCGAAATATATTA+CGG - chr6_1:100816447-100816466 Msa0902510:intron 15.0%
!! GCAAATAACAAAAATTAATT+TGG - chr6_1:100817465-100817484 Msa0902510:intron 15.0%
!!! ATCATTTTTGTTTTGATTTT+AGG - chr6_1:100817580-100817599 Msa0902510:intron 15.0%
!!! TTACTTTTATAGTTTTTCTT+TGG - chr6_1:100818963-100818982 Msa0902510:CDS 15.0%
!!! AATATTAAAGTATTATCAGT+TGG - chr6_1:100819438-100819457 Msa0902510:CDS 15.0%
!! ATAAATTTACCAAAACTATA+AGG + chr6_1:100819841-100819860 None:intergenic 15.0%
!!! TATAGTTTTGGTAAATTTAT+AGG - chr6_1:100819841-100819860 Msa0902510:intron 15.0%
!!! TTACATTACATTAGTTTTTT+AGG - chr6_1:100819990-100820009 Msa0902510:intron 15.0%
!! TTAAATTTAAATGTCCAAAA+AGG + chr6_1:100820223-100820242 None:intergenic 15.0%
!! TAAACAAATTTATATCTTCT+TGG + chr6_1:100816390-100816409 None:intergenic 15.0%
!! ATATTCATCGAAATATATTA+CGG - chr6_1:100816447-100816466 Msa0902510:intron 15.0%
!! GCAAATAACAAAAATTAATT+TGG - chr6_1:100817465-100817484 Msa0902510:intron 15.0%
!!! ATCATTTTTGTTTTGATTTT+AGG - chr6_1:100817580-100817599 Msa0902510:intron 15.0%
!!! TTACTTTTATAGTTTTTCTT+TGG - chr6_1:100818963-100818982 Msa0902510:CDS 15.0%
!!! AATATTAAAGTATTATCAGT+TGG - chr6_1:100819438-100819457 Msa0902510:CDS 15.0%
!! ATAAATTTACCAAAACTATA+AGG + chr6_1:100819841-100819860 None:intergenic 15.0%
!!! TATAGTTTTGGTAAATTTAT+AGG - chr6_1:100819841-100819860 Msa0902510:intron 15.0%
!!! TTACATTACATTAGTTTTTT+AGG - chr6_1:100819990-100820009 Msa0902510:intron 15.0%
!! TTAAATTTAAATGTCCAAAA+AGG + chr6_1:100820223-100820242 None:intergenic 15.0%
!!! GTGAATTCTAATTTTCATTA+TGG - chr6_1:100816263-100816282 Msa0902510:CDS 20.0%
!!! TTCTAATTTTCATTATGGAT+CGG - chr6_1:100816268-100816287 Msa0902510:CDS 20.0%
!!! GATTAATTGAATGCTTTAAA+TGG + chr6_1:100816608-100816627 None:intergenic 20.0%
!!! TTTGAATTTTGAATTGAAGA+GGG + chr6_1:100816663-100816682 None:intergenic 20.0%
!!! ATTTGAATTTTGAATTGAAG+AGG + chr6_1:100816664-100816683 None:intergenic 20.0%
!!! AAGAAATTTGAATATCGATT+GGG + chr6_1:100816790-100816809 None:intergenic 20.0%
!! AAAGAAATTTGAATATCGAT+TGG + chr6_1:100816791-100816810 None:intergenic 20.0%
!!! CATATATTTGAAGCTAAAAT+AGG + chr6_1:100817293-100817312 None:intergenic 20.0%
!!! TTGATTTTAGGTTTAGTTAA+AGG - chr6_1:100817592-100817611 Msa0902510:intron 20.0%
!!! ATTAGAGTTTCTTTTTTGAT+TGG - chr6_1:100817880-100817899 Msa0902510:intron 20.0%
!! GAAACATATAAAGTCAAAAT+AGG + chr6_1:100818214-100818233 None:intergenic 20.0%
!!! CTTTTTTGTTTTTTTTCTTC+AGG - chr6_1:100819016-100819035 Msa0902510:intron 20.0%
!! AATCACAATATTGATATGTT+TGG - chr6_1:100819080-100819099 Msa0902510:intron 20.0%
!!! CTCACATTTTAAAAAACTTA+AGG + chr6_1:100819154-100819173 None:intergenic 20.0%
!! AATATGTTTACGAAAAACTT+TGG - chr6_1:100820107-100820126 Msa0902510:intron 20.0%
!! AACTTTGAATCTATAATGAT+AGG + chr6_1:100820278-100820297 None:intergenic 20.0%
!! TTTGTAACTACATCAAATTT+CGG - chr6_1:100820296-100820315 Msa0902510:intron 20.0%
!!! GTGAATTCTAATTTTCATTA+TGG - chr6_1:100816263-100816282 Msa0902510:CDS 20.0%
!!! TTCTAATTTTCATTATGGAT+CGG - chr6_1:100816268-100816287 Msa0902510:CDS 20.0%
!!! GATTAATTGAATGCTTTAAA+TGG + chr6_1:100816608-100816627 None:intergenic 20.0%
!!! TTTGAATTTTGAATTGAAGA+GGG + chr6_1:100816663-100816682 None:intergenic 20.0%
!!! ATTTGAATTTTGAATTGAAG+AGG + chr6_1:100816664-100816683 None:intergenic 20.0%
!!! AAGAAATTTGAATATCGATT+GGG + chr6_1:100816790-100816809 None:intergenic 20.0%
!! AAAGAAATTTGAATATCGAT+TGG + chr6_1:100816791-100816810 None:intergenic 20.0%
!!! CATATATTTGAAGCTAAAAT+AGG + chr6_1:100817293-100817312 None:intergenic 20.0%
!!! TTGATTTTAGGTTTAGTTAA+AGG - chr6_1:100817592-100817611 Msa0902510:intron 20.0%
!!! ATTAGAGTTTCTTTTTTGAT+TGG - chr6_1:100817880-100817899 Msa0902510:intron 20.0%
!! GAAACATATAAAGTCAAAAT+AGG + chr6_1:100818214-100818233 None:intergenic 20.0%
!!! CTTTTTTGTTTTTTTTCTTC+AGG - chr6_1:100819016-100819035 Msa0902510:intron 20.0%
!! AATCACAATATTGATATGTT+TGG - chr6_1:100819080-100819099 Msa0902510:intron 20.0%
!!! CTCACATTTTAAAAAACTTA+AGG + chr6_1:100819154-100819173 None:intergenic 20.0%
!! AATATGTTTACGAAAAACTT+TGG - chr6_1:100820107-100820126 Msa0902510:intron 20.0%
!! AACTTTGAATCTATAATGAT+AGG + chr6_1:100820278-100820297 None:intergenic 20.0%
!! TTTGTAACTACATCAAATTT+CGG - chr6_1:100820296-100820315 Msa0902510:intron 20.0%
!!! AAGATTAGTGGACTAAAATT+GGG + chr6_1:100816525-100816544 None:intergenic 25.0%
!!! TAAGATTAGTGGACTAAAAT+TGG + chr6_1:100816526-100816545 None:intergenic 25.0%
!!! AATTTTAGTCCACTAATCTT+AGG - chr6_1:100816525-100816544 Msa0902510:intron 25.0%
! AATAGTATTATAATGTGACG+TGG + chr6_1:100816575-100816594 None:intergenic 25.0%
! AAGAATAAAGGAGAAAAAGT+AGG + chr6_1:100816715-100816734 None:intergenic 25.0%
! TTGAAGTTGGATAAGAATAA+AGG + chr6_1:100816727-100816746 None:intergenic 25.0%
!! GAGAAATAAATGTTTGAAGT+TGG + chr6_1:100816740-100816759 None:intergenic 25.0%
!!! TTTAAGGAAAAAATGGGTTA+GGG + chr6_1:100816992-100817011 None:intergenic 25.0%
!! ATTTAAGGAAAAAATGGGTT+AGG + chr6_1:100816993-100817012 None:intergenic 25.0%
! TTCGGATTTAAGGAAAAAAT+GGG + chr6_1:100816998-100817017 None:intergenic 25.0%
! TTTCGGATTTAAGGAAAAAA+TGG + chr6_1:100816999-100817018 None:intergenic 25.0%
! TTCAAATGGAAAACTAAATC+TGG + chr6_1:100817211-100817230 None:intergenic 25.0%
! TTAAAACTTTGCAGTTCAAA+TGG + chr6_1:100817225-100817244 None:intergenic 25.0%
! TCTAAAAAAAAGAGTGAGAT+AGG - chr6_1:100817366-100817385 Msa0902510:intron 25.0%
!!! ATTTTAGGTTTAGTTAAAGG+TGG - chr6_1:100817595-100817614 Msa0902510:intron 25.0%
! TTAGTATAAGTGAAAGAAGA+AGG + chr6_1:100817861-100817880 None:intergenic 25.0%
!!! TCTTTTTTGATTGGTTCTTT+TGG - chr6_1:100817889-100817908 Msa0902510:intron 25.0%
!!! TTTTAATTTGAATGTGTGTG+TGG + chr6_1:100817985-100818004 None:intergenic 25.0%
! ACAATATCATGTTAGATTGA+AGG + chr6_1:100818136-100818155 None:intergenic 25.0%
! TTACTCTACTAAAAACGTTA+TGG - chr6_1:100818159-100818178 Msa0902510:intron 25.0%
! TACTCTACTAAAAACGTTAT+GGG - chr6_1:100818160-100818179 Msa0902510:intron 25.0%
!! CATTCATGACTTTTATACTT+TGG + chr6_1:100818294-100818313 None:intergenic 25.0%
! AAAAGTCATGAATGAAGAAA+AGG - chr6_1:100818300-100818319 Msa0902510:intron 25.0%
! ATTAAAGGATCAAAATTGAG+TGG + chr6_1:100818410-100818429 None:intergenic 25.0%
! ACATCATTAAGCTCAATATT+GGG - chr6_1:100818440-100818459 Msa0902510:intron 25.0%
! TTATACAATGAATCATGTAC+TGG + chr6_1:100818530-100818549 None:intergenic 25.0%
! TTATGAATAGGGAATAAAAG+TGG + chr6_1:100818561-100818580 None:intergenic 25.0%
! TATAGACAGTCTATGTTAAT+AGG - chr6_1:100818664-100818683 Msa0902510:intron 25.0%
! ACAAATTTAACGAATTCCAA+GGG + chr6_1:100818728-100818747 None:intergenic 25.0%
! AACAAATTTAACGAATTCCA+AGG + chr6_1:100818729-100818748 None:intergenic 25.0%
!!! AAACAAAGACTTCTGTTTTT+GGG + chr6_1:100818797-100818816 None:intergenic 25.0%
!! TAAACAAAGACTTCTGTTTT+TGG + chr6_1:100818798-100818817 None:intergenic 25.0%
!! GAATCCTTATTTCAAATTGT+TGG + chr6_1:100818877-100818896 None:intergenic 25.0%
! TATATCACATTCATATCAAG+AGG + chr6_1:100819203-100819222 None:intergenic 25.0%
! TGAAAAACAAAAGAACATTC+AGG + chr6_1:100819327-100819346 None:intergenic 25.0%
!! TGTTTTTCATGTTCTTTTGT+TGG - chr6_1:100819338-100819357 Msa0902510:intron 25.0%
!! TTCTGAAGAAAAAAAGTGAA+AGG + chr6_1:100819650-100819669 None:intergenic 25.0%
! AGAAAATACTAATGCTTCAA+AGG - chr6_1:100819666-100819685 Msa0902510:intron 25.0%
!! AGTATTTTCCGATTAGATTA+AGG - chr6_1:100820169-100820188 Msa0902510:intron 25.0%
!! GTATTTTCCGATTAGATTAA+GGG - chr6_1:100820170-100820189 Msa0902510:intron 25.0%
!! TATTTTCCGATTAGATTAAG+GGG - chr6_1:100820171-100820190 Msa0902510:intron 25.0%
! ATAAAACCCCTTAATCTAAT+CGG + chr6_1:100820180-100820199 None:intergenic 25.0%
!!! AAGATTAGTGGACTAAAATT+GGG + chr6_1:100816525-100816544 None:intergenic 25.0%
!!! TAAGATTAGTGGACTAAAAT+TGG + chr6_1:100816526-100816545 None:intergenic 25.0%
!!! AATTTTAGTCCACTAATCTT+AGG - chr6_1:100816525-100816544 Msa0902510:intron 25.0%
! AATAGTATTATAATGTGACG+TGG + chr6_1:100816575-100816594 None:intergenic 25.0%
! AAGAATAAAGGAGAAAAAGT+AGG + chr6_1:100816715-100816734 None:intergenic 25.0%
! TTGAAGTTGGATAAGAATAA+AGG + chr6_1:100816727-100816746 None:intergenic 25.0%
!! GAGAAATAAATGTTTGAAGT+TGG + chr6_1:100816740-100816759 None:intergenic 25.0%
!!! TTTAAGGAAAAAATGGGTTA+GGG + chr6_1:100816992-100817011 None:intergenic 25.0%
!! ATTTAAGGAAAAAATGGGTT+AGG + chr6_1:100816993-100817012 None:intergenic 25.0%
! TTCGGATTTAAGGAAAAAAT+GGG + chr6_1:100816998-100817017 None:intergenic 25.0%
! TTTCGGATTTAAGGAAAAAA+TGG + chr6_1:100816999-100817018 None:intergenic 25.0%
! TTCAAATGGAAAACTAAATC+TGG + chr6_1:100817211-100817230 None:intergenic 25.0%
! TTAAAACTTTGCAGTTCAAA+TGG + chr6_1:100817225-100817244 None:intergenic 25.0%
! TCTAAAAAAAAGAGTGAGAT+AGG - chr6_1:100817366-100817385 Msa0902510:intron 25.0%
!!! ATTTTAGGTTTAGTTAAAGG+TGG - chr6_1:100817595-100817614 Msa0902510:intron 25.0%
! TTAGTATAAGTGAAAGAAGA+AGG + chr6_1:100817861-100817880 None:intergenic 25.0%
!!! TCTTTTTTGATTGGTTCTTT+TGG - chr6_1:100817889-100817908 Msa0902510:intron 25.0%
!!! TTTTAATTTGAATGTGTGTG+TGG + chr6_1:100817985-100818004 None:intergenic 25.0%
! ACAATATCATGTTAGATTGA+AGG + chr6_1:100818136-100818155 None:intergenic 25.0%
! TTACTCTACTAAAAACGTTA+TGG - chr6_1:100818159-100818178 Msa0902510:intron 25.0%
! TACTCTACTAAAAACGTTAT+GGG - chr6_1:100818160-100818179 Msa0902510:intron 25.0%
!! CATTCATGACTTTTATACTT+TGG + chr6_1:100818294-100818313 None:intergenic 25.0%
! AAAAGTCATGAATGAAGAAA+AGG - chr6_1:100818300-100818319 Msa0902510:intron 25.0%
! ATTAAAGGATCAAAATTGAG+TGG + chr6_1:100818410-100818429 None:intergenic 25.0%
! ACATCATTAAGCTCAATATT+GGG - chr6_1:100818440-100818459 Msa0902510:intron 25.0%
! TTATACAATGAATCATGTAC+TGG + chr6_1:100818530-100818549 None:intergenic 25.0%
! TTATGAATAGGGAATAAAAG+TGG + chr6_1:100818561-100818580 None:intergenic 25.0%
! TATAGACAGTCTATGTTAAT+AGG - chr6_1:100818664-100818683 Msa0902510:intron 25.0%
! ACAAATTTAACGAATTCCAA+GGG + chr6_1:100818728-100818747 None:intergenic 25.0%
! AACAAATTTAACGAATTCCA+AGG + chr6_1:100818729-100818748 None:intergenic 25.0%
!!! AAACAAAGACTTCTGTTTTT+GGG + chr6_1:100818797-100818816 None:intergenic 25.0%
!! TAAACAAAGACTTCTGTTTT+TGG + chr6_1:100818798-100818817 None:intergenic 25.0%
!! GAATCCTTATTTCAAATTGT+TGG + chr6_1:100818877-100818896 None:intergenic 25.0%
! TATATCACATTCATATCAAG+AGG + chr6_1:100819203-100819222 None:intergenic 25.0%
! TGAAAAACAAAAGAACATTC+AGG + chr6_1:100819327-100819346 None:intergenic 25.0%
!! TGTTTTTCATGTTCTTTTGT+TGG - chr6_1:100819338-100819357 Msa0902510:intron 25.0%
!! TTCTGAAGAAAAAAAGTGAA+AGG + chr6_1:100819650-100819669 None:intergenic 25.0%
! AGAAAATACTAATGCTTCAA+AGG - chr6_1:100819666-100819685 Msa0902510:intron 25.0%
!! AGTATTTTCCGATTAGATTA+AGG - chr6_1:100820169-100820188 Msa0902510:intron 25.0%
!! GTATTTTCCGATTAGATTAA+GGG - chr6_1:100820170-100820189 Msa0902510:intron 25.0%
!! TATTTTCCGATTAGATTAAG+GGG - chr6_1:100820171-100820190 Msa0902510:intron 25.0%
! ATAAAACCCCTTAATCTAAT+CGG + chr6_1:100820180-100820199 None:intergenic 25.0%
!! AGATTAGTGGACTAAAATTG+GGG + chr6_1:100816524-100816543 None:intergenic 30.0%
ATAAAGGAGAAAAAGTAGGA+GGG + chr6_1:100816711-100816730 None:intergenic 30.0%
AATAAAGGAGAAAAAGTAGG+AGG + chr6_1:100816712-100816731 None:intergenic 30.0%
TTGTGAGAAAGAGATGAAAA+TGG + chr6_1:100816849-100816868 None:intergenic 30.0%
ACAAAAATCGAAAAATGGTG+TGG + chr6_1:100816877-100816896 None:intergenic 30.0%
GAGAGACAAAAATCGAAAAA+TGG + chr6_1:100816882-100816901 None:intergenic 30.0%
TGAAATTCTAATCCCAACAT+GGG + chr6_1:100817025-100817044 None:intergenic 30.0%
ATGAAATTCTAATCCCAACA+TGG + chr6_1:100817026-100817045 None:intergenic 30.0%
TGTTGGGATTAGAATTTCAT+TGG - chr6_1:100817026-100817045 Msa0902510:intron 30.0%
TCAGAAACTGAAGTTGAAAA+AGG + chr6_1:100817066-100817085 None:intergenic 30.0%
TTTGTGTACAGTTTCTTTCA+AGG - chr6_1:100817103-100817122 Msa0902510:intron 30.0%
TTTCTTTCAAGGAGAAATCA+AGG - chr6_1:100817114-100817133 Msa0902510:intron 30.0%
AAGAATGAGCAAGATGATAT+TGG - chr6_1:100817140-100817159 Msa0902510:intron 30.0%
! TGTTTGCAATTCTTTTTCCA+GGG - chr6_1:100817423-100817442 Msa0902510:intron 30.0%
AAAGACAAAATTACAAACCC+TGG + chr6_1:100817443-100817462 None:intergenic 30.0%
ATTATGAAGATCTCAGGATT+TGG - chr6_1:100817622-100817641 Msa0902510:intron 30.0%
!! TTCATGGTAACTCTGTTTTT+AGG - chr6_1:100817918-100817937 Msa0902510:intron 30.0%
!! TTTTTAGGCTAAAGTTTGAC+TGG - chr6_1:100817933-100817952 Msa0902510:intron 30.0%
TAGATTGAAGGAACAAAACA+TGG + chr6_1:100818124-100818143 None:intergenic 30.0%
TAGGATTGAAAGACATAATG+AGG + chr6_1:100818240-100818259 None:intergenic 30.0%
! TCCAGAAACATGTTCATTTT+CGG - chr6_1:100818375-100818394 Msa0902510:intron 30.0%
GACATCATTAAGCTCAATAT+TGG - chr6_1:100818439-100818458 Msa0902510:intron 30.0%
ACGAAAAATGACTAAGTGAA+AGG + chr6_1:100818489-100818508 None:intergenic 30.0%
ATTAATCTTCCTTATACCCT+TGG - chr6_1:100818709-100818728 Msa0902510:intron 30.0%
! GTGTCCAACAATTTGAAATA+AGG - chr6_1:100818870-100818889 Msa0902510:intron 30.0%
TGAAGTTATATCTCTCATGT+TGG - chr6_1:100818987-100819006 Msa0902510:CDS 30.0%
TCAGGAATTTCTCATTCAAA+TGG - chr6_1:100819034-100819053 Msa0902510:intron 30.0%
!!! GTTTTTTAAAATGTGAGCGA+AGG - chr6_1:100819157-100819176 Msa0902510:intron 30.0%
! TTGTATTTTGCGTTTCATTC+AGG - chr6_1:100819240-100819259 Msa0902510:intron 30.0%
TTCAAGCATGTATTACCAAT+GGG - chr6_1:100819361-100819380 Msa0902510:intron 30.0%
!!! GGATGTATTTTGATTGATTG+AGG - chr6_1:100819383-100819402 Msa0902510:intron 30.0%
AAAATGTACAAGACATGAGT+TGG - chr6_1:100819548-100819567 Msa0902510:intron 30.0%
AAATGTACAAGACATGAGTT+GGG - chr6_1:100819549-100819568 Msa0902510:intron 30.0%
!!! TGTGTTTTGAAATGAGATGT+AGG - chr6_1:100819725-100819744 Msa0902510:intron 30.0%
AGATGTAACAATATTGAGAG+AGG - chr6_1:100819769-100819788 Msa0902510:intron 30.0%
! TACACGTAACCTTATAGTTT+TGG - chr6_1:100819829-100819848 Msa0902510:intron 30.0%
TGATAGGACACAATTCAAAT+AGG + chr6_1:100820262-100820281 None:intergenic 30.0%
!! AGATTAGTGGACTAAAATTG+GGG + chr6_1:100816524-100816543 None:intergenic 30.0%
ATAAAGGAGAAAAAGTAGGA+GGG + chr6_1:100816711-100816730 None:intergenic 30.0%
AATAAAGGAGAAAAAGTAGG+AGG + chr6_1:100816712-100816731 None:intergenic 30.0%
TTGTGAGAAAGAGATGAAAA+TGG + chr6_1:100816849-100816868 None:intergenic 30.0%
ACAAAAATCGAAAAATGGTG+TGG + chr6_1:100816877-100816896 None:intergenic 30.0%
GAGAGACAAAAATCGAAAAA+TGG + chr6_1:100816882-100816901 None:intergenic 30.0%
TGAAATTCTAATCCCAACAT+GGG + chr6_1:100817025-100817044 None:intergenic 30.0%
ATGAAATTCTAATCCCAACA+TGG + chr6_1:100817026-100817045 None:intergenic 30.0%
TGTTGGGATTAGAATTTCAT+TGG - chr6_1:100817026-100817045 Msa0902510:intron 30.0%
TCAGAAACTGAAGTTGAAAA+AGG + chr6_1:100817066-100817085 None:intergenic 30.0%
TTTGTGTACAGTTTCTTTCA+AGG - chr6_1:100817103-100817122 Msa0902510:intron 30.0%
TTTCTTTCAAGGAGAAATCA+AGG - chr6_1:100817114-100817133 Msa0902510:intron 30.0%
AAGAATGAGCAAGATGATAT+TGG - chr6_1:100817140-100817159 Msa0902510:intron 30.0%
! TGTTTGCAATTCTTTTTCCA+GGG - chr6_1:100817423-100817442 Msa0902510:intron 30.0%
AAAGACAAAATTACAAACCC+TGG + chr6_1:100817443-100817462 None:intergenic 30.0%
ATTATGAAGATCTCAGGATT+TGG - chr6_1:100817622-100817641 Msa0902510:intron 30.0%
!! TTCATGGTAACTCTGTTTTT+AGG - chr6_1:100817918-100817937 Msa0902510:intron 30.0%
!! TTTTTAGGCTAAAGTTTGAC+TGG - chr6_1:100817933-100817952 Msa0902510:intron 30.0%
TAGATTGAAGGAACAAAACA+TGG + chr6_1:100818124-100818143 None:intergenic 30.0%
TAGGATTGAAAGACATAATG+AGG + chr6_1:100818240-100818259 None:intergenic 30.0%
! TCCAGAAACATGTTCATTTT+CGG - chr6_1:100818375-100818394 Msa0902510:intron 30.0%
GACATCATTAAGCTCAATAT+TGG - chr6_1:100818439-100818458 Msa0902510:intron 30.0%
ACGAAAAATGACTAAGTGAA+AGG + chr6_1:100818489-100818508 None:intergenic 30.0%
ATTAATCTTCCTTATACCCT+TGG - chr6_1:100818709-100818728 Msa0902510:intron 30.0%
! GTGTCCAACAATTTGAAATA+AGG - chr6_1:100818870-100818889 Msa0902510:intron 30.0%
TGAAGTTATATCTCTCATGT+TGG - chr6_1:100818987-100819006 Msa0902510:CDS 30.0%
TCAGGAATTTCTCATTCAAA+TGG - chr6_1:100819034-100819053 Msa0902510:intron 30.0%
!!! GTTTTTTAAAATGTGAGCGA+AGG - chr6_1:100819157-100819176 Msa0902510:intron 30.0%
! TTGTATTTTGCGTTTCATTC+AGG - chr6_1:100819240-100819259 Msa0902510:intron 30.0%
TTCAAGCATGTATTACCAAT+GGG - chr6_1:100819361-100819380 Msa0902510:intron 30.0%
!!! GGATGTATTTTGATTGATTG+AGG - chr6_1:100819383-100819402 Msa0902510:intron 30.0%
AAAATGTACAAGACATGAGT+TGG - chr6_1:100819548-100819567 Msa0902510:intron 30.0%
AAATGTACAAGACATGAGTT+GGG - chr6_1:100819549-100819568 Msa0902510:intron 30.0%
!!! TGTGTTTTGAAATGAGATGT+AGG - chr6_1:100819725-100819744 Msa0902510:intron 30.0%
AGATGTAACAATATTGAGAG+AGG - chr6_1:100819769-100819788 Msa0902510:intron 30.0%
! TACACGTAACCTTATAGTTT+TGG - chr6_1:100819829-100819848 Msa0902510:intron 30.0%
TGATAGGACACAATTCAAAT+AGG + chr6_1:100820262-100820281 None:intergenic 30.0%
!! GATTAGTGGACTAAAATTGG+GGG + chr6_1:100816523-100816542 None:intergenic 35.0%
TGATTGACACCTAAGATTAG+TGG + chr6_1:100816537-100816556 None:intergenic 35.0%
TGAGAAAGAGATGAAAATGG+AGG + chr6_1:100816846-100816865 None:intergenic 35.0%
!! AGTGAATGAGTTTGTTAGCA+TGG + chr6_1:100816940-100816959 None:intergenic 35.0%
AAACTCATTCACTATCAGCA+AGG - chr6_1:100816947-100816966 Msa0902510:intron 35.0%
! CATGGGTATTTTCGGATTTA+AGG + chr6_1:100817008-100817027 None:intergenic 35.0%
AAATCCGAAAATACCCATGT+TGG - chr6_1:100817009-100817028 Msa0902510:intron 35.0%
AATCCGAAAATACCCATGTT+GGG - chr6_1:100817010-100817029 Msa0902510:intron 35.0%
! AATCCCAACATGGGTATTTT+CGG + chr6_1:100817016-100817035 None:intergenic 35.0%
CAACTTCAGTTTCTGATGTT+TGG - chr6_1:100817070-100817089 Msa0902510:intron 35.0%
! GTGTTTGCAATTCTTTTTCC+AGG - chr6_1:100817422-100817441 Msa0902510:intron 35.0%
GGACAAATTATGAAGATCTC+AGG - chr6_1:100817616-100817635 Msa0902510:intron 35.0%
GAGATTCAAACATATGCTGA+TGG + chr6_1:100817834-100817853 None:intergenic 35.0%
!! GTTCTTTTGGAAGAACTTCA+TGG - chr6_1:100817902-100817921 Msa0902510:intron 35.0%
! TGGTGGTTTGAGATTTGAAT+GGG + chr6_1:100818104-100818123 None:intergenic 35.0%
! ATGGTGGTTTGAGATTTGAA+TGG + chr6_1:100818105-100818124 None:intergenic 35.0%
ATTGAAGGAACAAAACATGG+TGG + chr6_1:100818121-100818140 None:intergenic 35.0%
! ATGAAGAAAAGGCATGTTAG+AGG - chr6_1:100818311-100818330 Msa0902510:intron 35.0%
! TGAAGAAAAGGCATGTTAGA+GGG - chr6_1:100818312-100818331 Msa0902510:intron 35.0%
TCCGAAAATGAACATGTTTC+TGG + chr6_1:100818379-100818398 None:intergenic 35.0%
GATGTCGAAGGTTGTATTAA+AGG + chr6_1:100818425-100818444 None:intergenic 35.0%
ATTGAGCTTAATGATGTCGA+AGG + chr6_1:100818437-100818456 None:intergenic 35.0%
GACAGTCTATGTTAATAGGA+TGG - chr6_1:100818668-100818687 Msa0902510:intron 35.0%
! TAACGAATTCCAAGGGTATA+AGG + chr6_1:100818721-100818740 None:intergenic 35.0%
! CTCAAAACACGGTGATTTTT+GGG + chr6_1:100818752-100818771 None:intergenic 35.0%
! ACTCAAAACACGGTGATTTT+TGG + chr6_1:100818753-100818772 None:intergenic 35.0%
AGCTTAAGCAACTCAAAACA+CGG + chr6_1:100818763-100818782 None:intergenic 35.0%
!!! TGTTTTGAGTTGCTTAAGCT+TGG - chr6_1:100818763-100818782 Msa0902510:intron 35.0%
TGTACTAGACAGAAATGTGA+TGG - chr6_1:100818828-100818847 Msa0902510:intron 35.0%
GTACTAGACAGAAATGTGAT+GGG - chr6_1:100818829-100818848 Msa0902510:intron 35.0%
! CAACTCTTATTTCCAATTGC+GGG + chr6_1:100818936-100818955 None:intergenic 35.0%
! GCAACTCTTATTTCCAATTG+CGG + chr6_1:100818937-100818956 None:intergenic 35.0%
GTTCAAGCATGTATTACCAA+TGG - chr6_1:100819360-100819379 Msa0902510:intron 35.0%
TCAAGCATGTATTACCAATG+GGG - chr6_1:100819362-100819381 Msa0902510:intron 35.0%
CAATCAAAATACATCCCCAT+TGG + chr6_1:100819379-100819398 None:intergenic 35.0%
!!! GTTTTGAAATGAGATGTAGG+TGG - chr6_1:100819728-100819747 Msa0902510:intron 35.0%
ATGAGATGTAGGTGGAAAAT+TGG - chr6_1:100819736-100819755 Msa0902510:intron 35.0%
!! AAAGGTTGAGAGAGTGTTAT+GGG + chr6_1:100820205-100820224 None:intergenic 35.0%
!! AAAAGGTTGAGAGAGTGTTA+TGG + chr6_1:100820206-100820225 None:intergenic 35.0%
! TAACACTCTCTCAACCTTTT+TGG - chr6_1:100820206-100820225 Msa0902510:intron 35.0%
ACATCAAATTTCGGAAGCTT+AGG - chr6_1:100820305-100820324 Msa0902510:intron 35.0%
!! GATTAGTGGACTAAAATTGG+GGG + chr6_1:100816523-100816542 None:intergenic 35.0%
TGATTGACACCTAAGATTAG+TGG + chr6_1:100816537-100816556 None:intergenic 35.0%
TGAGAAAGAGATGAAAATGG+AGG + chr6_1:100816846-100816865 None:intergenic 35.0%
!! AGTGAATGAGTTTGTTAGCA+TGG + chr6_1:100816940-100816959 None:intergenic 35.0%
AAACTCATTCACTATCAGCA+AGG - chr6_1:100816947-100816966 Msa0902510:intron 35.0%
! CATGGGTATTTTCGGATTTA+AGG + chr6_1:100817008-100817027 None:intergenic 35.0%
AAATCCGAAAATACCCATGT+TGG - chr6_1:100817009-100817028 Msa0902510:intron 35.0%
AATCCGAAAATACCCATGTT+GGG - chr6_1:100817010-100817029 Msa0902510:intron 35.0%
! AATCCCAACATGGGTATTTT+CGG + chr6_1:100817016-100817035 None:intergenic 35.0%
CAACTTCAGTTTCTGATGTT+TGG - chr6_1:100817070-100817089 Msa0902510:intron 35.0%
! GTGTTTGCAATTCTTTTTCC+AGG - chr6_1:100817422-100817441 Msa0902510:intron 35.0%
GGACAAATTATGAAGATCTC+AGG - chr6_1:100817616-100817635 Msa0902510:intron 35.0%
GAGATTCAAACATATGCTGA+TGG + chr6_1:100817834-100817853 None:intergenic 35.0%
!! GTTCTTTTGGAAGAACTTCA+TGG - chr6_1:100817902-100817921 Msa0902510:intron 35.0%
! TGGTGGTTTGAGATTTGAAT+GGG + chr6_1:100818104-100818123 None:intergenic 35.0%
! ATGGTGGTTTGAGATTTGAA+TGG + chr6_1:100818105-100818124 None:intergenic 35.0%
ATTGAAGGAACAAAACATGG+TGG + chr6_1:100818121-100818140 None:intergenic 35.0%
! ATGAAGAAAAGGCATGTTAG+AGG - chr6_1:100818311-100818330 Msa0902510:intron 35.0%
! TGAAGAAAAGGCATGTTAGA+GGG - chr6_1:100818312-100818331 Msa0902510:intron 35.0%
TCCGAAAATGAACATGTTTC+TGG + chr6_1:100818379-100818398 None:intergenic 35.0%
GATGTCGAAGGTTGTATTAA+AGG + chr6_1:100818425-100818444 None:intergenic 35.0%
ATTGAGCTTAATGATGTCGA+AGG + chr6_1:100818437-100818456 None:intergenic 35.0%
GACAGTCTATGTTAATAGGA+TGG - chr6_1:100818668-100818687 Msa0902510:intron 35.0%
! TAACGAATTCCAAGGGTATA+AGG + chr6_1:100818721-100818740 None:intergenic 35.0%
! CTCAAAACACGGTGATTTTT+GGG + chr6_1:100818752-100818771 None:intergenic 35.0%
! ACTCAAAACACGGTGATTTT+TGG + chr6_1:100818753-100818772 None:intergenic 35.0%
AGCTTAAGCAACTCAAAACA+CGG + chr6_1:100818763-100818782 None:intergenic 35.0%
!!! TGTTTTGAGTTGCTTAAGCT+TGG - chr6_1:100818763-100818782 Msa0902510:intron 35.0%
TGTACTAGACAGAAATGTGA+TGG - chr6_1:100818828-100818847 Msa0902510:intron 35.0%
GTACTAGACAGAAATGTGAT+GGG - chr6_1:100818829-100818848 Msa0902510:intron 35.0%
! CAACTCTTATTTCCAATTGC+GGG + chr6_1:100818936-100818955 None:intergenic 35.0%
! GCAACTCTTATTTCCAATTG+CGG + chr6_1:100818937-100818956 None:intergenic 35.0%
GTTCAAGCATGTATTACCAA+TGG - chr6_1:100819360-100819379 Msa0902510:intron 35.0%
TCAAGCATGTATTACCAATG+GGG - chr6_1:100819362-100819381 Msa0902510:intron 35.0%
CAATCAAAATACATCCCCAT+TGG + chr6_1:100819379-100819398 None:intergenic 35.0%
!!! GTTTTGAAATGAGATGTAGG+TGG - chr6_1:100819728-100819747 Msa0902510:intron 35.0%
ATGAGATGTAGGTGGAAAAT+TGG - chr6_1:100819736-100819755 Msa0902510:intron 35.0%
!! AAAGGTTGAGAGAGTGTTAT+GGG + chr6_1:100820205-100820224 None:intergenic 35.0%
!! AAAAGGTTGAGAGAGTGTTA+TGG + chr6_1:100820206-100820225 None:intergenic 35.0%
! TAACACTCTCTCAACCTTTT+TGG - chr6_1:100820206-100820225 Msa0902510:intron 35.0%
ACATCAAATTTCGGAAGCTT+AGG - chr6_1:100820305-100820324 Msa0902510:intron 35.0%
AGAAAAAGTAGGAGGGAAGT+AGG + chr6_1:100816704-100816723 None:intergenic 40.0%
GAGCAATTGCAATTTGCAAC+AGG - chr6_1:100817644-100817663 Msa0902510:intron 40.0%
GAGATTTGAATGGGTGTTAG+TGG + chr6_1:100818095-100818114 None:intergenic 40.0%
!! GAACATGTTTCTGGAATCAG+TGG + chr6_1:100818370-100818389 None:intergenic 40.0%
AAAATGTGAGCGAAGGTAGA+TGG - chr6_1:100819164-100819183 Msa0902510:intron 40.0%
AAATTTCGGAAGCTTAGGCT+TGG - chr6_1:100820310-100820329 Msa0902510:intron 40.0%
AGAAAAAGTAGGAGGGAAGT+AGG + chr6_1:100816704-100816723 None:intergenic 40.0%
GAGCAATTGCAATTTGCAAC+AGG - chr6_1:100817644-100817663 Msa0902510:intron 40.0%
GAGATTTGAATGGGTGTTAG+TGG + chr6_1:100818095-100818114 None:intergenic 40.0%
!! GAACATGTTTCTGGAATCAG+TGG + chr6_1:100818370-100818389 None:intergenic 40.0%
AAAATGTGAGCGAAGGTAGA+TGG - chr6_1:100819164-100819183 Msa0902510:intron 40.0%
AAATTTCGGAAGCTTAGGCT+TGG - chr6_1:100820310-100820329 Msa0902510:intron 40.0%
CATGTTGAAGCTGCAGACAT+AGG - chr6_1:100817168-100817187 Msa0902510:intron 45.0%
TTTGAATGGGTGTTAGTGGC+AGG + chr6_1:100818091-100818110 None:intergenic 45.0%
GACTGACTGTCTGAAAGCAA+TGG - chr6_1:100819280-100819299 Msa0902510:intron 45.0%
TCCAACTGTCATTGCAATCG+AGG - chr6_1:100819606-100819625 Msa0902510:intron 45.0%
ACCTCGATTGCAATGACAGT+TGG + chr6_1:100819610-100819629 None:intergenic 45.0%
CATGTTGAAGCTGCAGACAT+AGG - chr6_1:100817168-100817187 Msa0902510:intron 45.0%
TTTGAATGGGTGTTAGTGGC+AGG + chr6_1:100818091-100818110 None:intergenic 45.0%
GACTGACTGTCTGAAAGCAA+TGG - chr6_1:100819280-100819299 Msa0902510:intron 45.0%
TCCAACTGTCATTGCAATCG+AGG - chr6_1:100819606-100819625 Msa0902510:intron 45.0%
ACCTCGATTGCAATGACAGT+TGG + chr6_1:100819610-100819629 None:intergenic 45.0%
!! TTTGTAAATTAAAAATATTT+AGG + chr6_1:100818259-100818278 None:intergenic 5.0%
!!! AATTTTATTAATTTATGTAA+AGG - chr6_1:100819465-100819484 Msa0902510:CDS 5.0%
!!! AAAAAAAAAAAATCAATTTT+CGG + chr6_1:100819906-100819925 None:intergenic 5.0%
!! TTTGTAAATTAAAAATATTT+AGG + chr6_1:100818259-100818278 None:intergenic 5.0%
!!! AATTTTATTAATTTATGTAA+AGG - chr6_1:100819465-100819484 Msa0902510:CDS 5.0%
!!! AAAAAAAAAAAATCAATTTT+CGG + chr6_1:100819906-100819925 None:intergenic 5.0%
! AACGTTATGGGCTATGCAGC+TGG - chr6_1:100818172-100818191 Msa0902510:intron 50.0%
TCCAATTGCGGGACTCATTG+TGG + chr6_1:100818925-100818944 None:intergenic 50.0%
AAGCTTAGGCTTGGAGACTC+TGG - chr6_1:100820319-100820338 Msa0902510:intron 50.0%
! CTGGATTGAAAGCATGCCAC+TGG - chr6_1:100820338-100820357 Msa0902510:intron 50.0%
! AACGTTATGGGCTATGCAGC+TGG - chr6_1:100818172-100818191 Msa0902510:intron 50.0%
TCCAATTGCGGGACTCATTG+TGG + chr6_1:100818925-100818944 None:intergenic 50.0%
AAGCTTAGGCTTGGAGACTC+TGG - chr6_1:100820319-100820338 Msa0902510:intron 50.0%
! CTGGATTGAAAGCATGCCAC+TGG - chr6_1:100820338-100820357 Msa0902510:intron 50.0%
GCCACAATGAGTCCCGCAAT+TGG - chr6_1:100818921-100818940 Msa0902510:intron 55.0%
TAGTACCCGTGCAACGCACA+GGG + chr6_1:100820135-100820154 None:intergenic 55.0%
ATAGTACCCGTGCAACGCAC+AGG + chr6_1:100820136-100820155 None:intergenic 55.0%
GCCACAATGAGTCCCGCAAT+TGG - chr6_1:100818921-100818940 Msa0902510:intron 55.0%
TAGTACCCGTGCAACGCACA+GGG + chr6_1:100820135-100820154 None:intergenic 55.0%
ATAGTACCCGTGCAACGCAC+AGG + chr6_1:100820136-100820155 None:intergenic 55.0%
TTGGCGCCCTGTGCGTTGCA+CGG - chr6_1:100820126-100820145 Msa0902510:intron 65.0%
TTGGCGCCCTGTGCGTTGCA+CGG - chr6_1:100820126-100820145 Msa0902510:intron 65.0%
TGGCGCCCTGTGCGTTGCAC+GGG - chr6_1:100820127-100820146 Msa0902510:intron 70.0%
TGGCGCCCTGTGCGTTGCAC+GGG - chr6_1:100820127-100820146 Msa0902510:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 100816253 100820369 100816253 ID=Msa0902510;Name=Msa0902510
chr6_1 mRNA 100816253 100820369 100816253 ID=Msa0902510-mRNA-1;Parent=Msa0902510;Name=Msa0902510-mRNA-1;_AED=0.59;_eAED=0.59;_QI=0|0.33|0.5|0.5|1|1|4|0|75
chr6_1 exon 100820364 100820369 100820364 ID=Msa0902510-mRNA-1:exon:17864;Parent=Msa0902510-mRNA-1
chr6_1 exon 100819433 100819508 100819433 ID=Msa0902510-mRNA-1:exon:17863;Parent=Msa0902510-mRNA-1
chr6_1 exon 100818957 100819020 100818957 ID=Msa0902510-mRNA-1:exon:17862;Parent=Msa0902510-mRNA-1
chr6_1 exon 100816253 100816334 100816253 ID=Msa0902510-mRNA-1:exon:17861;Parent=Msa0902510-mRNA-1
chr6_1 CDS 100820364 100820369 100820364 ID=Msa0902510-mRNA-1:cds;Parent=Msa0902510-mRNA-1
chr6_1 CDS 100819433 100819508 100819433 ID=Msa0902510-mRNA-1:cds;Parent=Msa0902510-mRNA-1
chr6_1 CDS 100818957 100819020 100818957 ID=Msa0902510-mRNA-1:cds;Parent=Msa0902510-mRNA-1
chr6_1 CDS 100816253 100816334 100816253 ID=Msa0902510-mRNA-1:cds;Parent=Msa0902510-mRNA-1
Gene Sequence

>Msa0902510

ATGCAGTTTCTTTCAAGGAGAAATCAAGGAAGAAGAATGAGCAAGATGATATTGGTTTTGCATGTTGAAGCTGCAGACATAGGTTTAGTTAAAGGTGGACAAATTATGAAGATCTCAGGATTTGGAGCAATTGCAATTTGCAACAGATTCAAAGTTTGTAACTACATCAAATTTCGGAAGCTTAGGCTTGGAGACTCTGGATTGAAAGCATGCCACTGGAACTACTAG

Protein sequence

>Msa0902510

MQFLSRRNQGRRMSKMILVLHVEAADIGLVKGGQIMKISGFGAIAICNRFKVCNYIKFRKLRLGDSGLKACHWNY*