AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0320590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320590 MtrunA17_Chr2g0295871 98.204 167 3 0 1 167 1 167 4.18e-118 330
Msa0320590 MtrunA17_Chr6g0479151 87.500 160 20 0 1 160 1 160 8.56e-99 281
Msa0320590 MtrunA17_Chr1g0192201 83.333 168 27 1 1 167 1 168 1.45e-94 271
Msa0320590 MtrunA17_Chr1g0192171 82.738 168 28 1 1 167 1 168 6.65e-94 269
Msa0320590 MtrunA17_Chr1g0192161 67.442 129 41 1 19 146 9 137 6.02e-51 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320590 AT3G16640.1 75.595 168 40 1 1 167 1 168 9.90e-92 264
Msa0320590 AT3G05540.1 79.167 168 34 1 1 167 1 168 3.23e-87 253

Find 71 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTAAAACATGATAAATT+AGG 0.170564 2_4:-21198441 None:intergenic
TCCAACCTGATTAGATTTAA+TGG 0.175985 2_4:-21198549 None:intergenic
TGGAAATATGAGAGGTATAA+AGG 0.266222 2_4:+21196433 Msa0320590:five_prime_UTR
TTTGACAAGAAGCAGTTTCT+TGG 0.278246 2_4:+21197926 Msa0320590:CDS
TTGTTTCTCTGCATCTAGTT+TGG 0.281317 2_4:-21197981 None:intergenic
AGTTAAAACATGATAAATTA+GGG 0.282568 2_4:-21198440 None:intergenic
CTACTTTGCTTATGCTTTGA+AGG 0.304287 2_4:+21198378 Msa0320590:CDS
CATTCCCATTAAATCTAATC+AGG 0.315232 2_4:+21198544 Msa0320590:three_prime_UTR
TGTTTCTCTGCATCTAGTTT+GGG 0.318203 2_4:-21197980 None:intergenic
CCAACCTGATTAGATTTAAT+GGG 0.325851 2_4:-21198548 None:intergenic
GAGCTTGCCGAGCAAGTATT+TGG 0.326857 2_4:-21198035 None:intergenic
CCATTCTCAATTTCCTTGTA+TGG 0.327958 2_4:-21197530 None:intergenic
GTGTACTTTATTTATATCCT+AGG 0.357322 2_4:-21196474 None:intergenic
GTTTACCAGGATCTCCTTAC+CGG 0.366225 2_4:+21196615 Msa0320590:CDS
TGGAATGTTGTGGGAGGTTG+AGG 0.377236 2_4:+21197550 Msa0320590:CDS
TGGTGTGCAGTGGGTTACTA+AGG 0.380033 2_4:+21197663 Msa0320590:intron
CATAAGGAATGTCAGTTGTC+TGG 0.382147 2_4:+21198606 Msa0320590:three_prime_UTR
GAATTCTTGTGCAGCTTTGT+TGG 0.382904 2_4:+21198283 Msa0320590:intron
TGTTGACGTATTCAGACTTC+AGG 0.392904 2_4:+21197777 Msa0320590:CDS
ATTGAAGAGTTAACTGTCTC+TGG 0.397853 2_4:-21196585 None:intergenic
AGTTTCTTGGCTTTGTTAAG+AGG 0.407714 2_4:+21197939 Msa0320590:CDS
TTCAATCATGTTGGTTTACC+AGG 0.411320 2_4:+21196602 Msa0320590:exon
AACTGCTTCTTGTCAAAAGC+AGG 0.440893 2_4:-21197920 None:intergenic
CGAGAGTTGAGACTATGATT+TGG 0.445273 2_4:+21198483 Msa0320590:three_prime_UTR
TGTTGATGACACAGCTGTTA+AGG 0.453047 2_4:+21197744 Msa0320590:CDS
AACTGTCTCTGGATCGCTCC+TGG 0.460431 2_4:-21196574 None:intergenic
TGTACTTTATTTATATCCTA+GGG 0.469434 2_4:-21196473 None:intergenic
ATCAACCCCTCTTCACTCTC+AGG 0.472927 2_4:+21196506 Msa0320590:five_prime_UTR
TAAGCAAAGTAGAGAAATGT+TGG 0.475842 2_4:-21198367 None:intergenic
AGAGGTTCACTTACAATTGA+AGG 0.484964 2_4:-21198063 None:intergenic
ATTTACCGGTAAGGAGATCC+TGG 0.491049 2_4:-21196620 None:intergenic
CTGTTTAAGAAGCACATTGA+GGG 0.491843 2_4:+21198007 Msa0320590:CDS
GTTGTGGGAGGTTGAGGGAA+AGG 0.495448 2_4:+21197556 Msa0320590:CDS
CCATACAAGGAAATTGAGAA+TGG 0.502469 2_4:+21197530 Msa0320590:CDS
CCCATTAAATCTAATCAGGT+TGG 0.508900 2_4:+21198548 Msa0320590:three_prime_UTR
TGCTGAAGGTGGGGAAGATG+AGG 0.510874 2_4:+21197720 Msa0320590:CDS
GGTGTGCAGTGGGTTACTAA+GGG 0.531247 2_4:+21197664 Msa0320590:intron
CACGAACTCACTTTGCAACC+AGG 0.535097 2_4:+21196556 Msa0320590:five_prime_UTR
GGGCAGTGTAGAACTGTTGT+GGG 0.540841 2_4:-21198685 None:intergenic
AGGGCAGTGTAGAACTGTTG+TGG 0.541721 2_4:-21198686 None:intergenic
CTTGGTCTTCGCCTACTACA+AGG 0.543755 2_4:+21198330 Msa0320590:CDS
AGAAGTTAGATTTACCGGTA+AGG 0.548047 2_4:-21196629 None:intergenic
AGTTAACTCTTCAATCATGT+TGG 0.548862 2_4:+21196593 Msa0320590:exon
GGTGCTAACGCTTCTGCTGA+AGG 0.551924 2_4:+21197706 Msa0320590:CDS
GTCAGACTCTTATCCATACA+AGG 0.557898 2_4:+21197517 Msa0320590:CDS
AGCAGCACCATCCTTGTAGT+AGG 0.558714 2_4:-21198341 None:intergenic
GAGCGACCTGAGAGTGAAGA+GGG 0.563744 2_4:-21196512 None:intergenic
CTAACGCTTCTGCTGAAGGT+GGG 0.564433 2_4:+21197710 Msa0320590:CDS
GGAATGTTGTGGGAGGTTGA+GGG 0.570757 2_4:+21197551 Msa0320590:CDS
GTTCGTGCGGTGAAACAACA+AGG 0.571140 2_4:-21196540 None:intergenic
GCTAACGCTTCTGCTGAAGG+TGG 0.574811 2_4:+21197709 Msa0320590:CDS
CATGCATGATGATGGTAGCT+TGG 0.577740 2_4:+21198312 Msa0320590:CDS
ATACTTGCTCGGCAAGCTCA+AGG 0.590353 2_4:+21198039 Msa0320590:CDS
TAACGCTTCTGCTGAAGGTG+GGG 0.592268 2_4:+21197711 Msa0320590:CDS
AATTGAGAATGGAATGTTGT+GGG 0.596224 2_4:+21197541 Msa0320590:CDS
GGAGCAACCAAATACTTGCT+CGG 0.601945 2_4:+21198028 Msa0320590:CDS
GCTGTTTAAGAAGCACATTG+AGG 0.605157 2_4:+21198006 Msa0320590:CDS
GTCTTCGCCTACTACAAGGA+TGG 0.605413 2_4:+21198334 Msa0320590:CDS
GGAGTTGTTGAAGTAGACAT+TGG 0.611147 2_4:+21197685 Msa0320590:CDS
GGTGAGAGCATGCATGATGA+TGG 0.613806 2_4:+21198304 Msa0320590:CDS
GCTGAAGGTGGGGAAGATGA+GGG 0.626588 2_4:+21197721 Msa0320590:CDS
ACATGTCGTGCATAGAAGAG+TGG 0.632986 2_4:-21198738 None:intergenic
GCGGTGAAACAACAAGGGTA+CGG 0.639411 2_4:-21196534 None:intergenic
GGAGCGACCTGAGAGTGAAG+AGG 0.646314 2_4:-21196513 None:intergenic
TGAGAATGGAATGTTGTGGG+AGG 0.663472 2_4:+21197544 Msa0320590:CDS
GTTAAAACATGATAAATTAG+GGG 0.678480 2_4:-21198439 None:intergenic
GGTTGCAAAGTGAGTTCGTG+CGG 0.700992 2_4:-21196553 None:intergenic
AATTTGAAAGAAGAAACCCT+AGG 0.704412 2_4:+21196457 Msa0320590:five_prime_UTR
AGCGACCTGAGAGTGAAGAG+GGG 0.713708 2_4:-21196511 None:intergenic
AAATTGAGAATGGAATGTTG+TGG 0.718062 2_4:+21197540 Msa0320590:CDS
TTCGTGCGGTGAAACAACAA+GGG 0.729258 2_4:-21196539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATCTAATAATAAAAAAAG+CGG - chr2_4:21196680-21196699 None:intergenic 15.0%
!!! TTGTTGTTATTTTAATTCAT+TGG + chr2_4:21196746-21196765 Msa0320590:intron 15.0%
!! TTTCAAAAAATACTATATCT+GGG - chr2_4:21196851-21196870 None:intergenic 15.0%
!!! TTTTCAAAAAATACTATATC+TGG - chr2_4:21196852-21196871 None:intergenic 15.0%
!! ATATAAAACAATATAACAGA+AGG - chr2_4:21197018-21197037 None:intergenic 15.0%
!!! ATATCAATAAGTTCAAATTT+TGG + chr2_4:21197055-21197074 Msa0320590:intron 15.0%
!!! TTTTTGTTTGAAATATGTTA+TGG + chr2_4:21197431-21197450 Msa0320590:intron 15.0%
!! AGTTAAAACATGATAAATTA+GGG - chr2_4:21198443-21198462 None:intergenic 15.0%
!! TAGTTAAAACATGATAAATT+AGG - chr2_4:21198444-21198463 None:intergenic 15.0%
!! AGATCTAATAATAAAAAAAG+CGG - chr2_4:21196680-21196699 None:intergenic 15.0%
!!! TTGTTGTTATTTTAATTCAT+TGG + chr2_4:21196746-21196765 Msa0320590:intron 15.0%
!! TTTCAAAAAATACTATATCT+GGG - chr2_4:21196851-21196870 None:intergenic 15.0%
!!! TTTTCAAAAAATACTATATC+TGG - chr2_4:21196852-21196871 None:intergenic 15.0%
!! ATATAAAACAATATAACAGA+AGG - chr2_4:21197018-21197037 None:intergenic 15.0%
!!! ATATCAATAAGTTCAAATTT+TGG + chr2_4:21197055-21197074 Msa0320590:intron 15.0%
!!! TTTTTGTTTGAAATATGTTA+TGG + chr2_4:21197431-21197450 Msa0320590:intron 15.0%
!! AGTTAAAACATGATAAATTA+GGG - chr2_4:21198443-21198462 None:intergenic 15.0%
!! TAGTTAAAACATGATAAATT+AGG - chr2_4:21198444-21198463 None:intergenic 15.0%
!!! TGTACTTTATTTATATCCTA+GGG - chr2_4:21196476-21196495 None:intergenic 20.0%
!! CAATAAGTAAAAGTCATAAT+TGG - chr2_4:21196718-21196737 None:intergenic 20.0%
!!! TTATTTTAATTCATTGGATC+TGG + chr2_4:21196752-21196771 Msa0320590:intron 20.0%
!!! GGTTTCTAGATTTTAAAAAT+CGG - chr2_4:21196918-21196937 None:intergenic 20.0%
!! AATTAAAAATGTATCATCCA+AGG - chr2_4:21197830-21197849 None:intergenic 20.0%
!!! TGATTGTAATATTTGTCTTT+TGG + chr2_4:21198227-21198246 Msa0320590:intron 20.0%
!! GTTAAAACATGATAAATTAG+GGG - chr2_4:21198442-21198461 None:intergenic 20.0%
!!! TGTACTTTATTTATATCCTA+GGG - chr2_4:21196476-21196495 None:intergenic 20.0%
!! CAATAAGTAAAAGTCATAAT+TGG - chr2_4:21196718-21196737 None:intergenic 20.0%
!!! TTATTTTAATTCATTGGATC+TGG + chr2_4:21196752-21196771 Msa0320590:intron 20.0%
!!! GGTTTCTAGATTTTAAAAAT+CGG - chr2_4:21196918-21196937 None:intergenic 20.0%
!! AATTAAAAATGTATCATCCA+AGG - chr2_4:21197830-21197849 None:intergenic 20.0%
!!! TGATTGTAATATTTGTCTTT+TGG + chr2_4:21198227-21198246 Msa0320590:intron 20.0%
!! GTTAAAACATGATAAATTAG+GGG - chr2_4:21198442-21198461 None:intergenic 20.0%
!! GTGTACTTTATTTATATCCT+AGG - chr2_4:21196477-21196496 None:intergenic 25.0%
! TGCTGCACAAATAAAAATAA+TGG - chr2_4:21196939-21196958 None:intergenic 25.0%
!! TTGAGGGAATTTTATGATTA+CGG + chr2_4:21197084-21197103 Msa0320590:intron 25.0%
!!! TCTGAATTAGTTCTAATAGA+AGG + chr2_4:21197143-21197162 Msa0320590:intron 25.0%
!!! CTGAATTAGTTCTAATAGAA+GGG + chr2_4:21197144-21197163 Msa0320590:intron 25.0%
! TTCTAATAGAAGGGATAATT+CGG + chr2_4:21197153-21197172 Msa0320590:intron 25.0%
!! AAATCTAAGATCTGACTATT+GGG - chr2_4:21197289-21197308 None:intergenic 25.0%
!! TGTTTGAAATATGTTATGGT+TGG + chr2_4:21197435-21197454 Msa0320590:intron 25.0%
!! CGATACATATCATATTTTGT+AGG + chr2_4:21197482-21197501 Msa0320590:intron 25.0%
!! AGCTAAAAACTATTTGCTTT+TGG + chr2_4:21197643-21197662 Msa0320590:intron 25.0%
!!! TTGTTATGTGTTGACTTTAT+AGG + chr2_4:21197892-21197911 Msa0320590:intron 25.0%
!! GATTTTTCTTGTGTTTCATA+AGG + chr2_4:21198590-21198609 Msa0320590:three_prime_UTR 25.0%
!!! AAAGCACTTTTAAATACAGA+GGG - chr2_4:21198708-21198727 None:intergenic 25.0%
!!! AAAAGCACTTTTAAATACAG+AGG - chr2_4:21198709-21198728 None:intergenic 25.0%
!! GTGTACTTTATTTATATCCT+AGG - chr2_4:21196477-21196496 None:intergenic 25.0%
! TGCTGCACAAATAAAAATAA+TGG - chr2_4:21196939-21196958 None:intergenic 25.0%
!! TTGAGGGAATTTTATGATTA+CGG + chr2_4:21197084-21197103 Msa0320590:intron 25.0%
!!! TCTGAATTAGTTCTAATAGA+AGG + chr2_4:21197143-21197162 Msa0320590:intron 25.0%
!!! CTGAATTAGTTCTAATAGAA+GGG + chr2_4:21197144-21197163 Msa0320590:intron 25.0%
! TTCTAATAGAAGGGATAATT+CGG + chr2_4:21197153-21197172 Msa0320590:intron 25.0%
!! AAATCTAAGATCTGACTATT+GGG - chr2_4:21197289-21197308 None:intergenic 25.0%
!! TGTTTGAAATATGTTATGGT+TGG + chr2_4:21197435-21197454 Msa0320590:intron 25.0%
!! CGATACATATCATATTTTGT+AGG + chr2_4:21197482-21197501 Msa0320590:intron 25.0%
!! AGCTAAAAACTATTTGCTTT+TGG + chr2_4:21197643-21197662 Msa0320590:intron 25.0%
!!! TTGTTATGTGTTGACTTTAT+AGG + chr2_4:21197892-21197911 Msa0320590:intron 25.0%
!! GATTTTTCTTGTGTTTCATA+AGG + chr2_4:21198590-21198609 Msa0320590:three_prime_UTR 25.0%
!!! AAAGCACTTTTAAATACAGA+GGG - chr2_4:21198708-21198727 None:intergenic 25.0%
!!! AAAAGCACTTTTAAATACAG+AGG - chr2_4:21198709-21198728 None:intergenic 25.0%
!! GGAATTTTTGGAAATATGAG+AGG + chr2_4:21196425-21196444 Msa0320590:five_prime_UTR 30.0%
! TGGAAATATGAGAGGTATAA+AGG + chr2_4:21196433-21196452 Msa0320590:five_prime_UTR 30.0%
AATTTGAAAGAAGAAACCCT+AGG + chr2_4:21196457-21196476 Msa0320590:five_prime_UTR 30.0%
AGTTAACTCTTCAATCATGT+TGG + chr2_4:21196593-21196612 Msa0320590:exon 30.0%
ATGAGAGAAGTTAGATTTAC+CGG - chr2_4:21196637-21196656 None:intergenic 30.0%
!! TTTTATTTGTGCAGCATAGT+AGG + chr2_4:21196943-21196962 Msa0320590:intron 30.0%
! TCAAATTTTGGATGAGATTG+AGG + chr2_4:21197067-21197086 Msa0320590:intron 30.0%
! CAAATTTTGGATGAGATTGA+GGG + chr2_4:21197068-21197087 Msa0320590:intron 30.0%
TCTAATAGAAGGGATAATTC+GGG + chr2_4:21197154-21197173 Msa0320590:intron 30.0%
ACTGCATCATATTAACAAAC+AGG - chr2_4:21197191-21197210 None:intergenic 30.0%
! TGTTTGTTAATATGATGCAG+TGG + chr2_4:21197190-21197209 Msa0320590:intron 30.0%
! CAAATCTAAGATCTGACTAT+TGG - chr2_4:21197290-21197309 None:intergenic 30.0%
AAATTGAGAATGGAATGTTG+TGG + chr2_4:21197540-21197559 Msa0320590:CDS 30.0%
AATTGAGAATGGAATGTTGT+GGG + chr2_4:21197541-21197560 Msa0320590:CDS 30.0%
TATCATCCAAGGATATAAAG+AGG - chr2_4:21197819-21197838 None:intergenic 30.0%
!! AATTACACTCTGAAATCAAG+TGG - chr2_4:21197869-21197888 None:intergenic 30.0%
TAAGCAAAGTAGAGAAATGT+TGG - chr2_4:21198370-21198389 None:intergenic 30.0%
CATTCCCATTAAATCTAATC+AGG + chr2_4:21198544-21198563 Msa0320590:three_prime_UTR 30.0%
CCAACCTGATTAGATTTAAT+GGG - chr2_4:21198551-21198570 None:intergenic 30.0%
TCCAACCTGATTAGATTTAA+TGG - chr2_4:21198552-21198571 None:intergenic 30.0%
!! GGAATTTTTGGAAATATGAG+AGG + chr2_4:21196425-21196444 Msa0320590:five_prime_UTR 30.0%
! TGGAAATATGAGAGGTATAA+AGG + chr2_4:21196433-21196452 Msa0320590:five_prime_UTR 30.0%
AATTTGAAAGAAGAAACCCT+AGG + chr2_4:21196457-21196476 Msa0320590:five_prime_UTR 30.0%
AGTTAACTCTTCAATCATGT+TGG + chr2_4:21196593-21196612 Msa0320590:exon 30.0%
ATGAGAGAAGTTAGATTTAC+CGG - chr2_4:21196637-21196656 None:intergenic 30.0%
!! TTTTATTTGTGCAGCATAGT+AGG + chr2_4:21196943-21196962 Msa0320590:intron 30.0%
! TCAAATTTTGGATGAGATTG+AGG + chr2_4:21197067-21197086 Msa0320590:intron 30.0%
! CAAATTTTGGATGAGATTGA+GGG + chr2_4:21197068-21197087 Msa0320590:intron 30.0%
TCTAATAGAAGGGATAATTC+GGG + chr2_4:21197154-21197173 Msa0320590:intron 30.0%
ACTGCATCATATTAACAAAC+AGG - chr2_4:21197191-21197210 None:intergenic 30.0%
! TGTTTGTTAATATGATGCAG+TGG + chr2_4:21197190-21197209 Msa0320590:intron 30.0%
! CAAATCTAAGATCTGACTAT+TGG - chr2_4:21197290-21197309 None:intergenic 30.0%
AAATTGAGAATGGAATGTTG+TGG + chr2_4:21197540-21197559 Msa0320590:CDS 30.0%
AATTGAGAATGGAATGTTGT+GGG + chr2_4:21197541-21197560 Msa0320590:CDS 30.0%
TATCATCCAAGGATATAAAG+AGG - chr2_4:21197819-21197838 None:intergenic 30.0%
!! AATTACACTCTGAAATCAAG+TGG - chr2_4:21197869-21197888 None:intergenic 30.0%
TAAGCAAAGTAGAGAAATGT+TGG - chr2_4:21198370-21198389 None:intergenic 30.0%
CATTCCCATTAAATCTAATC+AGG + chr2_4:21198544-21198563 Msa0320590:three_prime_UTR 30.0%
CCAACCTGATTAGATTTAAT+GGG - chr2_4:21198551-21198570 None:intergenic 30.0%
TCCAACCTGATTAGATTTAA+TGG - chr2_4:21198552-21198571 None:intergenic 30.0%
ATTGAAGAGTTAACTGTCTC+TGG - chr2_4:21196588-21196607 None:intergenic 35.0%
!! TTCAATCATGTTGGTTTACC+AGG + chr2_4:21196602-21196621 Msa0320590:exon 35.0%
AGAAGTTAGATTTACCGGTA+AGG - chr2_4:21196632-21196651 None:intergenic 35.0%
! CATATTCTGATTTTCTGTGC+TGG + chr2_4:21196816-21196835 Msa0320590:intron 35.0%
TAACCAATAAAACAGAGCAC+AGG - chr2_4:21196993-21197012 None:intergenic 35.0%
CTAATAGAAGGGATAATTCG+GGG + chr2_4:21197155-21197174 Msa0320590:intron 35.0%
TCGAACCATAGGATTAAGAT+CGG + chr2_4:21197227-21197246 Msa0320590:intron 35.0%
ATATGTTATGGTTGGATGCT+TGG + chr2_4:21197443-21197462 Msa0320590:intron 35.0%
CCATTCTCAATTTCCTTGTA+TGG - chr2_4:21197533-21197552 None:intergenic 35.0%
CCATACAAGGAAATTGAGAA+TGG + chr2_4:21197530-21197549 Msa0320590:CDS 35.0%
TGACGTAGTTATGTTACACT+TGG + chr2_4:21197612-21197631 Msa0320590:intron 35.0%
GACGTAGTTATGTTACACTT+GGG + chr2_4:21197613-21197632 Msa0320590:intron 35.0%
ACGTAGTTATGTTACACTTG+GGG + chr2_4:21197614-21197633 Msa0320590:intron 35.0%
!! CAAGGATATAAAGAGGTGTT+TGG - chr2_4:21197812-21197831 None:intergenic 35.0%
CAAACACCTCTTTATATCCT+TGG + chr2_4:21197810-21197829 Msa0320590:intron 35.0%
TTTGACAAGAAGCAGTTTCT+TGG + chr2_4:21197926-21197945 Msa0320590:CDS 35.0%
!! AGTTTCTTGGCTTTGTTAAG+AGG + chr2_4:21197939-21197958 Msa0320590:CDS 35.0%
! TGTTTCTCTGCATCTAGTTT+GGG - chr2_4:21197983-21198002 None:intergenic 35.0%
! TTGTTTCTCTGCATCTAGTT+TGG - chr2_4:21197984-21198003 None:intergenic 35.0%
! CTGTTTAAGAAGCACATTGA+GGG + chr2_4:21198007-21198026 Msa0320590:CDS 35.0%
AGAGGTTCACTTACAATTGA+AGG - chr2_4:21198066-21198085 None:intergenic 35.0%
TTCTTGAATGTGCATGATAG+AGG - chr2_4:21198084-21198103 None:intergenic 35.0%
TCTATCATGCACATTCAAGA+AGG + chr2_4:21198083-21198102 Msa0320590:intron 35.0%
CTACTTTGCTTATGCTTTGA+AGG + chr2_4:21198378-21198397 Msa0320590:CDS 35.0%
CCCATTAAATCTAATCAGGT+TGG + chr2_4:21198548-21198567 Msa0320590:three_prime_UTR 35.0%
ATTGAAGAGTTAACTGTCTC+TGG - chr2_4:21196588-21196607 None:intergenic 35.0%
!! TTCAATCATGTTGGTTTACC+AGG + chr2_4:21196602-21196621 Msa0320590:exon 35.0%
AGAAGTTAGATTTACCGGTA+AGG - chr2_4:21196632-21196651 None:intergenic 35.0%
! CATATTCTGATTTTCTGTGC+TGG + chr2_4:21196816-21196835 Msa0320590:intron 35.0%
TAACCAATAAAACAGAGCAC+AGG - chr2_4:21196993-21197012 None:intergenic 35.0%
CTAATAGAAGGGATAATTCG+GGG + chr2_4:21197155-21197174 Msa0320590:intron 35.0%
TCGAACCATAGGATTAAGAT+CGG + chr2_4:21197227-21197246 Msa0320590:intron 35.0%
ATATGTTATGGTTGGATGCT+TGG + chr2_4:21197443-21197462 Msa0320590:intron 35.0%
CCATTCTCAATTTCCTTGTA+TGG - chr2_4:21197533-21197552 None:intergenic 35.0%
CCATACAAGGAAATTGAGAA+TGG + chr2_4:21197530-21197549 Msa0320590:CDS 35.0%
TGACGTAGTTATGTTACACT+TGG + chr2_4:21197612-21197631 Msa0320590:intron 35.0%
GACGTAGTTATGTTACACTT+GGG + chr2_4:21197613-21197632 Msa0320590:intron 35.0%
ACGTAGTTATGTTACACTTG+GGG + chr2_4:21197614-21197633 Msa0320590:intron 35.0%
!! CAAGGATATAAAGAGGTGTT+TGG - chr2_4:21197812-21197831 None:intergenic 35.0%
CAAACACCTCTTTATATCCT+TGG + chr2_4:21197810-21197829 Msa0320590:intron 35.0%
TTTGACAAGAAGCAGTTTCT+TGG + chr2_4:21197926-21197945 Msa0320590:CDS 35.0%
!! AGTTTCTTGGCTTTGTTAAG+AGG + chr2_4:21197939-21197958 Msa0320590:CDS 35.0%
! TGTTTCTCTGCATCTAGTTT+GGG - chr2_4:21197983-21198002 None:intergenic 35.0%
! TTGTTTCTCTGCATCTAGTT+TGG - chr2_4:21197984-21198003 None:intergenic 35.0%
! CTGTTTAAGAAGCACATTGA+GGG + chr2_4:21198007-21198026 Msa0320590:CDS 35.0%
AGAGGTTCACTTACAATTGA+AGG - chr2_4:21198066-21198085 None:intergenic 35.0%
TTCTTGAATGTGCATGATAG+AGG - chr2_4:21198084-21198103 None:intergenic 35.0%
TCTATCATGCACATTCAAGA+AGG + chr2_4:21198083-21198102 Msa0320590:intron 35.0%
CTACTTTGCTTATGCTTTGA+AGG + chr2_4:21198378-21198397 Msa0320590:CDS 35.0%
CCCATTAAATCTAATCAGGT+TGG + chr2_4:21198548-21198567 Msa0320590:three_prime_UTR 35.0%
AAAGCGGAAAATTGAAGCGA+TGG - chr2_4:21196664-21196683 None:intergenic 40.0%
! TTGCCTGTGCTCTGTTTTAT+TGG + chr2_4:21196987-21197006 Msa0320590:intron 40.0%
AGTTGAGCAATTCGAACCAT+AGG + chr2_4:21197216-21197235 Msa0320590:intron 40.0%
ACCATAGGATTAAGATCGGA+TGG + chr2_4:21197231-21197250 Msa0320590:intron 40.0%
CGATCTCAATCCAAACGAAT+TGG + chr2_4:21197312-21197331 Msa0320590:intron 40.0%
CTCAATCCAAACGAATTGGT+TGG + chr2_4:21197316-21197335 Msa0320590:intron 40.0%
GTCAGACTCTTATCCATACA+AGG + chr2_4:21197517-21197536 Msa0320590:CDS 40.0%
!! TATTTGCTTTTGGTGTGCAG+TGG + chr2_4:21197653-21197672 Msa0320590:intron 40.0%
!! ATTTGCTTTTGGTGTGCAGT+GGG + chr2_4:21197654-21197673 Msa0320590:intron 40.0%
GGAGTTGTTGAAGTAGACAT+TGG + chr2_4:21197685-21197704 Msa0320590:CDS 40.0%
!! TGTTGATGACACAGCTGTTA+AGG + chr2_4:21197744-21197763 Msa0320590:CDS 40.0%
TGTTGACGTATTCAGACTTC+AGG + chr2_4:21197777-21197796 Msa0320590:CDS 40.0%
! ACGTATTCAGACTTCAGGTT+AGG + chr2_4:21197782-21197801 Msa0320590:intron 40.0%
AACTGCTTCTTGTCAAAAGC+AGG - chr2_4:21197923-21197942 None:intergenic 40.0%
! GCTGTTTAAGAAGCACATTG+AGG + chr2_4:21198006-21198025 Msa0320590:CDS 40.0%
! GAATTCTTGTGCAGCTTTGT+TGG + chr2_4:21198283-21198302 Msa0320590:intron 40.0%
CGAGAGTTGAGACTATGATT+TGG + chr2_4:21198483-21198502 Msa0320590:three_prime_UTR 40.0%
CATAAGGAATGTCAGTTGTC+TGG + chr2_4:21198606-21198625 Msa0320590:three_prime_UTR 40.0%
AAAGCGGAAAATTGAAGCGA+TGG - chr2_4:21196664-21196683 None:intergenic 40.0%
! TTGCCTGTGCTCTGTTTTAT+TGG + chr2_4:21196987-21197006 Msa0320590:intron 40.0%
AGTTGAGCAATTCGAACCAT+AGG + chr2_4:21197216-21197235 Msa0320590:intron 40.0%
ACCATAGGATTAAGATCGGA+TGG + chr2_4:21197231-21197250 Msa0320590:intron 40.0%
CGATCTCAATCCAAACGAAT+TGG + chr2_4:21197312-21197331 Msa0320590:intron 40.0%
CTCAATCCAAACGAATTGGT+TGG + chr2_4:21197316-21197335 Msa0320590:intron 40.0%
GTCAGACTCTTATCCATACA+AGG + chr2_4:21197517-21197536 Msa0320590:CDS 40.0%
!! TATTTGCTTTTGGTGTGCAG+TGG + chr2_4:21197653-21197672 Msa0320590:intron 40.0%
!! ATTTGCTTTTGGTGTGCAGT+GGG + chr2_4:21197654-21197673 Msa0320590:intron 40.0%
GGAGTTGTTGAAGTAGACAT+TGG + chr2_4:21197685-21197704 Msa0320590:CDS 40.0%
!! TGTTGATGACACAGCTGTTA+AGG + chr2_4:21197744-21197763 Msa0320590:CDS 40.0%
TGTTGACGTATTCAGACTTC+AGG + chr2_4:21197777-21197796 Msa0320590:CDS 40.0%
! ACGTATTCAGACTTCAGGTT+AGG + chr2_4:21197782-21197801 Msa0320590:intron 40.0%
AACTGCTTCTTGTCAAAAGC+AGG - chr2_4:21197923-21197942 None:intergenic 40.0%
! GCTGTTTAAGAAGCACATTG+AGG + chr2_4:21198006-21198025 Msa0320590:CDS 40.0%
! GAATTCTTGTGCAGCTTTGT+TGG + chr2_4:21198283-21198302 Msa0320590:intron 40.0%
CGAGAGTTGAGACTATGATT+TGG + chr2_4:21198483-21198502 Msa0320590:three_prime_UTR 40.0%
CATAAGGAATGTCAGTTGTC+TGG + chr2_4:21198606-21198625 Msa0320590:three_prime_UTR 40.0%
TTCGTGCGGTGAAACAACAA+GGG - chr2_4:21196542-21196561 None:intergenic 45.0%
GTTTACCAGGATCTCCTTAC+CGG + chr2_4:21196615-21196634 Msa0320590:CDS 45.0%
ATTTACCGGTAAGGAGATCC+TGG - chr2_4:21196623-21196642 None:intergenic 45.0%
GCCATCCGATCTTAATCCTA+TGG - chr2_4:21197235-21197254 None:intergenic 45.0%
CTGTAGCCAACCAATTCGTT+TGG - chr2_4:21197325-21197344 None:intergenic 45.0%
! CAAACGAATTGGTTGGCTAC+AGG + chr2_4:21197323-21197342 Msa0320590:intron 45.0%
TGAGAATGGAATGTTGTGGG+AGG + chr2_4:21197544-21197563 Msa0320590:CDS 45.0%
GGAGCAACCAAATACTTGCT+CGG + chr2_4:21198028-21198047 Msa0320590:CDS 45.0%
!! CATGCATGATGATGGTAGCT+TGG + chr2_4:21198312-21198331 Msa0320590:CDS 45.0%
ACATGTCGTGCATAGAAGAG+TGG - chr2_4:21198741-21198760 None:intergenic 45.0%
TCTATGCACGACATGTCTCT+TGG + chr2_4:21198745-21198764 Msa0320590:three_prime_UTR 45.0%
CTATGCACGACATGTCTCTT+GGG + chr2_4:21198746-21198765 Msa0320590:three_prime_UTR 45.0%
TATGCACGACATGTCTCTTG+GGG + chr2_4:21198747-21198766 Msa0320590:three_prime_UTR 45.0%
TTCGTGCGGTGAAACAACAA+GGG - chr2_4:21196542-21196561 None:intergenic 45.0%
GTTTACCAGGATCTCCTTAC+CGG + chr2_4:21196615-21196634 Msa0320590:CDS 45.0%
ATTTACCGGTAAGGAGATCC+TGG - chr2_4:21196623-21196642 None:intergenic 45.0%
GCCATCCGATCTTAATCCTA+TGG - chr2_4:21197235-21197254 None:intergenic 45.0%
CTGTAGCCAACCAATTCGTT+TGG - chr2_4:21197325-21197344 None:intergenic 45.0%
! CAAACGAATTGGTTGGCTAC+AGG + chr2_4:21197323-21197342 Msa0320590:intron 45.0%
TGAGAATGGAATGTTGTGGG+AGG + chr2_4:21197544-21197563 Msa0320590:CDS 45.0%
GGAGCAACCAAATACTTGCT+CGG + chr2_4:21198028-21198047 Msa0320590:CDS 45.0%
!! CATGCATGATGATGGTAGCT+TGG + chr2_4:21198312-21198331 Msa0320590:CDS 45.0%
ACATGTCGTGCATAGAAGAG+TGG - chr2_4:21198741-21198760 None:intergenic 45.0%
ATCAACCCCTCTTCACTCTC+AGG + chr2_4:21196506-21196525 Msa0320590:five_prime_UTR 50.0%
GCGGTGAAACAACAAGGGTA+CGG - chr2_4:21196537-21196556 None:intergenic 50.0%
GTTCGTGCGGTGAAACAACA+AGG - chr2_4:21196543-21196562 None:intergenic 50.0%
GGTTGCAAAGTGAGTTCGTG+CGG - chr2_4:21196556-21196575 None:intergenic 50.0%
CACGAACTCACTTTGCAACC+AGG + chr2_4:21196556-21196575 Msa0320590:five_prime_UTR 50.0%
TGGAATGTTGTGGGAGGTTG+AGG + chr2_4:21197550-21197569 Msa0320590:CDS 50.0%
GGAATGTTGTGGGAGGTTGA+GGG + chr2_4:21197551-21197570 Msa0320590:CDS 50.0%
!! TGGTGTGCAGTGGGTTACTA+AGG + chr2_4:21197663-21197682 Msa0320590:intron 50.0%
!! GGTGTGCAGTGGGTTACTAA+GGG + chr2_4:21197664-21197683 Msa0320590:intron 50.0%
CTAACGCTTCTGCTGAAGGT+GGG + chr2_4:21197710-21197729 Msa0320590:CDS 50.0%
TAACGCTTCTGCTGAAGGTG+GGG + chr2_4:21197711-21197730 Msa0320590:CDS 50.0%
GAGCTTGCCGAGCAAGTATT+TGG - chr2_4:21198038-21198057 None:intergenic 50.0%
ATACTTGCTCGGCAAGCTCA+AGG + chr2_4:21198039-21198058 Msa0320590:CDS 50.0%
! GGTGAGAGCATGCATGATGA+TGG + chr2_4:21198304-21198323 Msa0320590:CDS 50.0%
! CTTGGTCTTCGCCTACTACA+AGG + chr2_4:21198330-21198349 Msa0320590:CDS 50.0%
GTCTTCGCCTACTACAAGGA+TGG + chr2_4:21198334-21198353 Msa0320590:CDS 50.0%
AGCAGCACCATCCTTGTAGT+AGG - chr2_4:21198344-21198363 None:intergenic 50.0%
GGGCAGTGTAGAACTGTTGT+GGG - chr2_4:21198688-21198707 None:intergenic 50.0%
AGGGCAGTGTAGAACTGTTG+TGG - chr2_4:21198689-21198708 None:intergenic 50.0%
ATCAACCCCTCTTCACTCTC+AGG + chr2_4:21196506-21196525 Msa0320590:five_prime_UTR 50.0%
GCGGTGAAACAACAAGGGTA+CGG - chr2_4:21196537-21196556 None:intergenic 50.0%
GTTCGTGCGGTGAAACAACA+AGG - chr2_4:21196543-21196562 None:intergenic 50.0%
GGTTGCAAAGTGAGTTCGTG+CGG - chr2_4:21196556-21196575 None:intergenic 50.0%
CACGAACTCACTTTGCAACC+AGG + chr2_4:21196556-21196575 Msa0320590:five_prime_UTR 50.0%
TGGAATGTTGTGGGAGGTTG+AGG + chr2_4:21197550-21197569 Msa0320590:CDS 50.0%
GGAATGTTGTGGGAGGTTGA+GGG + chr2_4:21197551-21197570 Msa0320590:CDS 50.0%
!! TGGTGTGCAGTGGGTTACTA+AGG + chr2_4:21197663-21197682 Msa0320590:intron 50.0%
!! GGTGTGCAGTGGGTTACTAA+GGG + chr2_4:21197664-21197683 Msa0320590:intron 50.0%
CTAACGCTTCTGCTGAAGGT+GGG + chr2_4:21197710-21197729 Msa0320590:CDS 50.0%
TAACGCTTCTGCTGAAGGTG+GGG + chr2_4:21197711-21197730 Msa0320590:CDS 50.0%
GAGCTTGCCGAGCAAGTATT+TGG - chr2_4:21198038-21198057 None:intergenic 50.0%
ATACTTGCTCGGCAAGCTCA+AGG + chr2_4:21198039-21198058 Msa0320590:CDS 50.0%
! GGTGAGAGCATGCATGATGA+TGG + chr2_4:21198304-21198323 Msa0320590:CDS 50.0%
! CTTGGTCTTCGCCTACTACA+AGG + chr2_4:21198330-21198349 Msa0320590:CDS 50.0%
GTCTTCGCCTACTACAAGGA+TGG + chr2_4:21198334-21198353 Msa0320590:CDS 50.0%
AGCAGCACCATCCTTGTAGT+AGG - chr2_4:21198344-21198363 None:intergenic 50.0%
GGGCAGTGTAGAACTGTTGT+GGG - chr2_4:21198688-21198707 None:intergenic 50.0%
AGGGCAGTGTAGAACTGTTG+TGG - chr2_4:21198689-21198708 None:intergenic 50.0%
AGCGACCTGAGAGTGAAGAG+GGG - chr2_4:21196514-21196533 None:intergenic 55.0%
GAGCGACCTGAGAGTGAAGA+GGG - chr2_4:21196515-21196534 None:intergenic 55.0%
AACTGTCTCTGGATCGCTCC+TGG - chr2_4:21196577-21196596 None:intergenic 55.0%
GTTGTGGGAGGTTGAGGGAA+AGG + chr2_4:21197556-21197575 Msa0320590:CDS 55.0%
GGTGCTAACGCTTCTGCTGA+AGG + chr2_4:21197706-21197725 Msa0320590:CDS 55.0%
GCTAACGCTTCTGCTGAAGG+TGG + chr2_4:21197709-21197728 Msa0320590:CDS 55.0%
TGCTGAAGGTGGGGAAGATG+AGG + chr2_4:21197720-21197739 Msa0320590:CDS 55.0%
GCTGAAGGTGGGGAAGATGA+GGG + chr2_4:21197721-21197740 Msa0320590:CDS 55.0%
AGCGACCTGAGAGTGAAGAG+GGG - chr2_4:21196514-21196533 None:intergenic 55.0%
GAGCGACCTGAGAGTGAAGA+GGG - chr2_4:21196515-21196534 None:intergenic 55.0%
AACTGTCTCTGGATCGCTCC+TGG - chr2_4:21196577-21196596 None:intergenic 55.0%
GTTGTGGGAGGTTGAGGGAA+AGG + chr2_4:21197556-21197575 Msa0320590:CDS 55.0%
GGTGCTAACGCTTCTGCTGA+AGG + chr2_4:21197706-21197725 Msa0320590:CDS 55.0%
GCTAACGCTTCTGCTGAAGG+TGG + chr2_4:21197709-21197728 Msa0320590:CDS 55.0%
TGCTGAAGGTGGGGAAGATG+AGG + chr2_4:21197720-21197739 Msa0320590:CDS 55.0%
GCTGAAGGTGGGGAAGATGA+GGG + chr2_4:21197721-21197740 Msa0320590:CDS 55.0%
GGAGCGACCTGAGAGTGAAG+AGG - chr2_4:21196516-21196535 None:intergenic 60.0%
GGAGCGACCTGAGAGTGAAG+AGG - chr2_4:21196516-21196535 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 21196424 21198766 21196424 ID=Msa0320590;Name=Msa0320590
chr2_4 mRNA 21196424 21198766 21196424 ID=Msa0320590-mRNA-1;Parent=Msa0320590;Name=Msa0320590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=185|1|1|1|1|1|5|352|167
chr2_4 exon 21196424 21196636 21196424 ID=Msa0320590-mRNA-1:exon:7791;Parent=Msa0320590-mRNA-1
chr2_4 exon 21197504 21197577 21197504 ID=Msa0320590-mRNA-1:exon:7792;Parent=Msa0320590-mRNA-1
chr2_4 exon 21197673 21197798 21197673 ID=Msa0320590-mRNA-1:exon:7793;Parent=Msa0320590-mRNA-1
chr2_4 exon 21197914 21198071 21197914 ID=Msa0320590-mRNA-1:exon:7794;Parent=Msa0320590-mRNA-1
chr2_4 exon 21198297 21198766 21198297 ID=Msa0320590-mRNA-1:exon:7795;Parent=Msa0320590-mRNA-1
chr2_4 five_prime_UTR 21196424 21196608 21196424 ID=Msa0320590-mRNA-1:five_prime_utr;Parent=Msa0320590-mRNA-1
chr2_4 CDS 21196609 21196636 21196609 ID=Msa0320590-mRNA-1:cds;Parent=Msa0320590-mRNA-1
chr2_4 CDS 21197504 21197577 21197504 ID=Msa0320590-mRNA-1:cds;Parent=Msa0320590-mRNA-1
chr2_4 CDS 21197673 21197798 21197673 ID=Msa0320590-mRNA-1:cds;Parent=Msa0320590-mRNA-1
chr2_4 CDS 21197914 21198071 21197914 ID=Msa0320590-mRNA-1:cds;Parent=Msa0320590-mRNA-1
chr2_4 CDS 21198297 21198414 21198297 ID=Msa0320590-mRNA-1:cds;Parent=Msa0320590-mRNA-1
chr2_4 three_prime_UTR 21198415 21198766 21198415 ID=Msa0320590-mRNA-1:three_prime_utr;Parent=Msa0320590-mRNA-1
Gene Sequence

>Msa0320590

ATGTTGGTTTACCAGGATCTCCTTACCGGTGATGAGCTTCTGTCAGACTCTTATCCATACAAGGAAATTGAGAATGGAATGTTGTGGGAGGTTGAGGGAAAGTGGGTTACTAAGGGAGTTGTTGAAGTAGACATTGGTGCTAACGCTTCTGCTGAAGGTGGGGAAGATGAGGGTGTTGATGACACAGCTGTTAAGGTTGTCGACATTGTTGACGTATTCAGACTTCAGGAACAACCTGCTTTTGACAAGAAGCAGTTTCTTGGCTTTGTTAAGAGGTATATCAAGTTGCTGACACCCAAACTAGATGCAGAGAAACAAGAGCTGTTTAAGAAGCACATTGAGGGAGCAACCAAATACTTGCTCGGCAAGCTCAAGGACCTTCAATTCTTTGTTGGTGAGAGCATGCATGATGATGGTAGCTTGGTCTTCGCCTACTACAAGGATGGTGCTGCTGATCCAACATTTCTCTACTTTGCTTATGCTTTGAAGGAAATCAAGTGTTAA

Protein sequence

>Msa0320590

MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDTAVKVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC*