Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0501100 | XP_003602948.2 | 100.000 | 158 | 0 | 0 | 2 | 159 | 602 | 759 | 2.04e-109 | 338 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0501100 | sp|Q94BQ3|ASG2_ARATH | 73.418 | 158 | 40 | 1 | 2 | 159 | 602 | 757 | 1.91e-80 | 255 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0501100 | G7J574 | 100.000 | 158 | 0 | 0 | 2 | 159 | 602 | 759 | 9.74e-110 | 338 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0234050 | Msa0501100 | 0.810029 | 1.412507e-50 | -8.615850e-47 |
Msa0398670 | Msa0501100 | 0.810478 | 1.129855e-50 | -8.615850e-47 |
Msa0477080 | Msa0501100 | 0.839035 | 2.015585e-57 | -8.615850e-47 |
Msa0501100 | Msa1244600 | 0.815813 | 7.629021e-52 | -8.615850e-47 |
Msa0501100 | Msa1434420 | -0.818317 | 2.087791e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0501100 | MtrunA17_Chr3g0133201 | 100.000 | 158 | 0 | 0 | 2 | 159 | 602 | 759 | 1.88e-113 | 338 |
Msa0501100 | MtrunA17_Chr1g0211421 | 51.190 | 84 | 40 | 1 | 11 | 94 | 326 | 408 | 4.04e-22 | 91.7 |
Msa0501100 | MtrunA17_Chr2g0325981 | 34.848 | 132 | 76 | 3 | 11 | 141 | 303 | 425 | 2.32e-17 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0501100 | AT5G10940.2 | 73.418 | 158 | 40 | 1 | 2 | 159 | 599 | 754 | 1.79e-81 | 255 |
Msa0501100 | AT5G10940.1 | 73.418 | 158 | 40 | 1 | 2 | 159 | 602 | 757 | 1.94e-81 | 255 |
Msa0501100 | AT4G35140.1 | 48.780 | 82 | 41 | 1 | 13 | 94 | 327 | 407 | 4.22e-20 | 86.3 |
Msa0501100 | AT4G35140.2 | 48.780 | 82 | 41 | 1 | 13 | 94 | 327 | 407 | 8.39e-20 | 85.5 |
Msa0501100 | AT4G38480.1 | 50.000 | 82 | 40 | 1 | 11 | 92 | 301 | 381 | 9.65e-20 | 85.1 |
Msa0501100 | AT4G38480.2 | 50.000 | 82 | 40 | 1 | 11 | 92 | 268 | 348 | 1.05e-19 | 85.1 |
Msa0501100 | AT3G45620.1 | 43.617 | 94 | 50 | 2 | 1 | 92 | 300 | 392 | 3.37e-19 | 83.6 |
Msa0501100 | AT3G45620.2 | 43.617 | 94 | 50 | 2 | 1 | 92 | 334 | 426 | 3.40e-19 | 83.6 |
Find 60 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATATGAAGCAGAGGTTTAT+TGG | 0.225807 | 3_4:+41748571 | Msa0501100:CDS |
ATGATGGCAGATGGTTTATT+TGG | 0.232067 | 3_4:+41750006 | Msa0501100:CDS |
AACAAAAGTTATCCCGTAAT+AGG | 0.237900 | 3_4:+41750404 | Msa0501100:CDS |
GAAACATGGAAAGTAAATTA+TGG | 0.240219 | 3_4:+41751636 | Msa0501100:three_prime_UTR |
GTGAAAATCGGTGAATCTTT+AGG | 0.266556 | 3_4:-41751067 | None:intergenic |
GGAAACTCATGCATTCTAAA+TGG | 0.278208 | 3_4:-41751003 | None:intergenic |
ATCGGTGAATCTTTAGGTTT+GGG | 0.313382 | 3_4:-41751061 | None:intergenic |
CTTCATATCAATAGCTGCTT+CGG | 0.322899 | 3_4:-41748557 | None:intergenic |
CCCAACACATCACCAGTTTC+TGG | 0.324612 | 3_4:-41750364 | None:intergenic |
TTCGGCGGTACTTGTGAATC+TGG | 0.352998 | 3_4:+41751556 | Msa0501100:three_prime_UTR |
ATATGAAGCAGAGGTTTATT+GGG | 0.354463 | 3_4:+41748572 | Msa0501100:CDS |
AGTAAATTATGGGTATTATC+TGG | 0.357292 | 3_4:+41751647 | Msa0501100:three_prime_UTR |
AATCGGTGAATCTTTAGGTT+TGG | 0.358671 | 3_4:-41751062 | None:intergenic |
TTTGCTGATATACTGTGTAT+AGG | 0.384474 | 3_4:+41751765 | Msa0501100:three_prime_UTR |
ACAAAAGTTATCCCGTAATA+GGG | 0.403715 | 3_4:+41750405 | Msa0501100:CDS |
CAGCATTGAATCCCTATTAC+GGG | 0.403849 | 3_4:-41750416 | None:intergenic |
AAACATGGAAAGTAAATTAT+GGG | 0.407287 | 3_4:+41751637 | Msa0501100:three_prime_UTR |
ACAGCATTGAATCCCTATTA+CGG | 0.407538 | 3_4:-41750417 | None:intergenic |
TTTAAAATGTCTCCCATGCT+TGG | 0.407815 | 3_4:-41751602 | None:intergenic |
TCTGTAGCTGGTGGTTCTGC+AGG | 0.414277 | 3_4:+41750340 | Msa0501100:CDS |
TGATGGCAGATGGTTTATTT+GGG | 0.418000 | 3_4:+41750007 | Msa0501100:CDS |
TTCATATCAATAGCTGCTTC+GGG | 0.434684 | 3_4:-41748556 | None:intergenic |
CCTGTTGCATCTTCTGTAGC+TGG | 0.440848 | 3_4:+41750328 | Msa0501100:CDS |
TGGGATTGATAACACGATAA+AGG | 0.444355 | 3_4:+41750207 | Msa0501100:CDS |
CTATTGTTGGAGATAAGTTA+AGG | 0.460225 | 3_4:-41751699 | None:intergenic |
CGCAAGCGTAGTGATCCTTC+AGG | 0.461853 | 3_4:-41751024 | None:intergenic |
GTTGCCACAACAAAATCAAA+TGG | 0.472347 | 3_4:-41750181 | None:intergenic |
TGGTGATGTGTTGGGTGCTA+TGG | 0.474086 | 3_4:+41750372 | Msa0501100:CDS |
TTTATTTGGGAAAAGCGAAC+TGG | 0.476711 | 3_4:+41750020 | Msa0501100:CDS |
TTTATTGGGCACTGCAATGT+GGG | 0.483595 | 3_4:+41748586 | Msa0501100:CDS |
TGTGGGGACTGATATAAAAC+AGG | 0.487794 | 3_4:+41748603 | Msa0501100:CDS |
TAGGTTTGGGCACATTCAAA+AGG | 0.492710 | 3_4:-41751048 | None:intergenic |
ACCACTGCAGGTGCTATGTT+CGG | 0.498241 | 3_4:+41751538 | Msa0501100:intron |
ACTTACCAGCAGGTGAAAAT+CGG | 0.501154 | 3_4:-41751079 | None:intergenic |
GGTTCTGCAGGACCAGAAAC+TGG | 0.510294 | 3_4:+41750352 | Msa0501100:CDS |
TTGCTGAGTGGCGATGAATC+TGG | 0.510859 | 3_4:+41750056 | Msa0501100:CDS |
AATGGTTCTAAGAGCTCAAA+GGG | 0.521850 | 3_4:-41750985 | None:intergenic |
CCAGCTACAGAAGATGCAAC+AGG | 0.527365 | 3_4:-41750328 | None:intergenic |
CTGGATTGAGATGATTCAGA+TGG | 0.527915 | 3_4:+41751575 | Msa0501100:three_prime_UTR |
ATATCAGCAAACATGGCAAT+CGG | 0.532176 | 3_4:-41751753 | None:intergenic |
TTCAGATGGGGAGCCAAGCA+TGG | 0.533212 | 3_4:+41751589 | Msa0501100:three_prime_UTR |
GAAGATGCAACAGGAGCACT+TGG | 0.539197 | 3_4:-41750319 | None:intergenic |
CCAGAAACTGGTGATGTGTT+GGG | 0.549316 | 3_4:+41750364 | Msa0501100:CDS |
ACCAGAAACTGGTGATGTGT+TGG | 0.557320 | 3_4:+41750363 | Msa0501100:CDS |
TGGATTGAGATGATTCAGAT+GGG | 0.565147 | 3_4:+41751576 | Msa0501100:three_prime_UTR |
AAATGGTTCTAAGAGCTCAA+AGG | 0.570232 | 3_4:-41750986 | None:intergenic |
GTTGCCAGCGGTAGTGATGA+TGG | 0.581492 | 3_4:+41749990 | Msa0501100:CDS |
AGAATGCATGAGTTTCCTGA+AGG | 0.588086 | 3_4:+41751009 | Msa0501100:CDS |
TCAGATGGGGAGCCAAGCAT+GGG | 0.595746 | 3_4:+41751590 | Msa0501100:three_prime_UTR |
GTTTATTGGGCACTGCAATG+TGG | 0.610985 | 3_4:+41748585 | Msa0501100:CDS |
TCTGCCATCATCACTACCGC+TGG | 0.617059 | 3_4:-41749994 | None:intergenic |
ACACAGTATATCAGCAAACA+TGG | 0.623834 | 3_4:-41751760 | None:intergenic |
GCGGTAGTGATGATGGCAGA+TGG | 0.626278 | 3_4:+41749997 | Msa0501100:CDS |
TTATTGGGCACTGCAATGTG+GGG | 0.632042 | 3_4:+41748587 | Msa0501100:CDS |
GTTGCATCTTCTGTAGCTGG+TGG | 0.634469 | 3_4:+41750331 | Msa0501100:CDS |
CAGCTATTGATATGAAGCAG+AGG | 0.640848 | 3_4:+41748563 | Msa0501100:CDS |
ATAGGTGAATATGTTGCCAG+CGG | 0.668912 | 3_4:+41749978 | Msa0501100:intron |
ACTGCAGGTGCTATGTTCGG+CGG | 0.684957 | 3_4:+41751541 | Msa0501100:intron |
GGATTGAGATGATTCAGATG+GGG | 0.686877 | 3_4:+41751577 | Msa0501100:three_prime_UTR |
AGACTCATGAAATTGCTGAG+TGG | 0.779389 | 3_4:+41750044 | Msa0501100:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTAACTATTTTTAATTCA+GGG | - | chr3_4:41751802-41751821 | None:intergenic | 10.0% |
!!! | TAATTAACTATTTTTAATTC+AGG | - | chr3_4:41751803-41751822 | None:intergenic | 10.0% |
!!! | TATAATTTTATCTACTTCAA+GGG | - | chr3_4:41749713-41749732 | None:intergenic | 15.0% |
!! | CAAAATAAAAATTGCAAATA+TGG | - | chr3_4:41749938-41749957 | None:intergenic | 15.0% |
!!! | AATGTTTTGTAAACAAAAAT+TGG | - | chr3_4:41751265-41751284 | None:intergenic | 15.0% |
!!! | ATAGTGTTGATTTTTTAAAA+AGG | + | chr3_4:41751718-41751737 | Msa0501100:three_prime_UTR | 15.0% |
!!! | ATAGAATATTATTTCCGTTT+TGG | + | chr3_4:41749088-41749107 | Msa0501100:intron | 20.0% |
!!! | AGTTACTGTTTATTTTCATA+TGG | + | chr3_4:41749270-41749289 | Msa0501100:intron | 20.0% |
!!! | GTATAATTTTATCTACTTCA+AGG | - | chr3_4:41749714-41749733 | None:intergenic | 20.0% |
!!! | ACAGTTTTATTGTATATTTC+CGG | + | chr3_4:41749814-41749833 | Msa0501100:intron | 20.0% |
!! | ATCATTATTCTATGATGTAT+TGG | + | chr3_4:41750235-41750254 | Msa0501100:intron | 20.0% |
!! | TCATTATTCTATGATGTATT+GGG | + | chr3_4:41750236-41750255 | Msa0501100:intron | 20.0% |
!!! | CAAGTAAATTTGTTAATATC+AGG | + | chr3_4:41750571-41750590 | Msa0501100:intron | 20.0% |
!!! | AAAAAGAATAAGTTGAAACA+TGG | + | chr3_4:41751622-41751641 | Msa0501100:three_prime_UTR | 20.0% |
!! | AAACATGGAAAGTAAATTAT+GGG | + | chr3_4:41751637-41751656 | Msa0501100:three_prime_UTR | 20.0% |
!! | TAAAAAATCAACACTATTGT+TGG | - | chr3_4:41751715-41751734 | None:intergenic | 20.0% |
!! | ATAAAACAGGCTAATTTTCT+TGG | + | chr3_4:41748616-41748635 | Msa0501100:CDS | 25.0% |
!! | AGGTAAAGTTCACTATTTTA+GGG | - | chr3_4:41748979-41748998 | None:intergenic | 25.0% |
!! | AAGGTAAAGTTCACTATTTT+AGG | - | chr3_4:41748980-41748999 | None:intergenic | 25.0% |
!!! | AATATTATTTCCGTTTTGGT+AGG | + | chr3_4:41749092-41749111 | Msa0501100:intron | 25.0% |
! | ATCATGTTCTTAACTAAGAT+CGG | - | chr3_4:41749223-41749242 | None:intergenic | 25.0% |
!! | ACATTAAAGCAAATCGTTTT+TGG | - | chr3_4:41749343-41749362 | None:intergenic | 25.0% |
! | CTTTAATGTATTCAATACCA+GGG | + | chr3_4:41749354-41749373 | Msa0501100:intron | 25.0% |
! | GTAAGTACCTATTGAAATTT+GGG | + | chr3_4:41749390-41749409 | Msa0501100:intron | 25.0% |
! | TAAGTACCTATTGAAATTTG+GGG | + | chr3_4:41749391-41749410 | Msa0501100:intron | 25.0% |
!! | AGATTAAAGCAAATCGTTTT+TGG | - | chr3_4:41749516-41749535 | None:intergenic | 25.0% |
! | CTTTAATCTATTCAATACCA+GGG | + | chr3_4:41749527-41749546 | Msa0501100:intron | 25.0% |
! | GTAAGTACATGTTGAAAATT+GGG | + | chr3_4:41749563-41749582 | Msa0501100:intron | 25.0% |
! | TAAGTACATGTTGAAAATTG+GGG | + | chr3_4:41749564-41749583 | Msa0501100:intron | 25.0% |
! | CTTGATAAGAGTTTATATAG+AGG | - | chr3_4:41749635-41749654 | None:intergenic | 25.0% |
! | CTTCTCACTTGTATATTTAT+AGG | + | chr3_4:41749960-41749979 | Msa0501100:intron | 25.0% |
!! | ACATTGTTTTCCTATGATTT+TGG | + | chr3_4:41750081-41750100 | Msa0501100:intron | 25.0% |
!! | CATTGTTTTCCTATGATTTT+GGG | + | chr3_4:41750082-41750101 | Msa0501100:intron | 25.0% |
! | CATTATTCTATGATGTATTG+GGG | + | chr3_4:41750237-41750256 | Msa0501100:intron | 25.0% |
! | TCACTTCTCAATACTATATA+GGG | - | chr3_4:41750459-41750478 | None:intergenic | 25.0% |
! | ATCACTTCTCAATACTATAT+AGG | - | chr3_4:41750460-41750479 | None:intergenic | 25.0% |
!! | TGTCTTTCAAGTAAATTTGA+CGG | + | chr3_4:41750524-41750543 | Msa0501100:intron | 25.0% |
! | AGATAAGAAATTTATGCAGT+TGG | - | chr3_4:41750662-41750681 | None:intergenic | 25.0% |
! | AATAACTTCTTGGTTATACA+AGG | - | chr3_4:41751148-41751167 | None:intergenic | 25.0% |
! | TTATGGTATCAATAACTTCT+TGG | - | chr3_4:41751158-41751177 | None:intergenic | 25.0% |
! | ATACCATAAATATCCCATAA+TGG | + | chr3_4:41751169-41751188 | Msa0501100:intron | 25.0% |
! | TACCATAAATATCCCATAAT+GGG | + | chr3_4:41751170-41751189 | Msa0501100:intron | 25.0% |
! | ATCCTTACAAAAAAACACAT+AGG | + | chr3_4:41751346-41751365 | Msa0501100:intron | 25.0% |
!!! | ATCCTATGTGTTTTTTTGTA+AGG | - | chr3_4:41751351-41751370 | None:intergenic | 25.0% |
!!! | TTGGAAGTTCATTTGTTTTA+GGG | + | chr3_4:41751461-41751480 | Msa0501100:intron | 25.0% |
! | GAAACATGGAAAGTAAATTA+TGG | + | chr3_4:41751636-41751655 | Msa0501100:three_prime_UTR | 25.0% |
! | AGTAAATTATGGGTATTATC+TGG | + | chr3_4:41751647-41751666 | Msa0501100:three_prime_UTR | 25.0% |
!! | ATATACTGTGTATAGGTTTT+TGG | + | chr3_4:41751772-41751791 | Msa0501100:three_prime_UTR | 25.0% |
ATATGAAGCAGAGGTTTATT+GGG | + | chr3_4:41748572-41748591 | Msa0501100:CDS | 30.0% | |
! | GCTAATTTTCTTGGTCAAAA+AGG | + | chr3_4:41748625-41748644 | Msa0501100:CDS | 30.0% |
AATTGAAGTTATCAATGTCG+TGG | + | chr3_4:41748724-41748743 | Msa0501100:intron | 30.0% | |
ATCATAAGTTCCTACCAAAA+CGG | - | chr3_4:41749105-41749124 | None:intergenic | 30.0% | |
TCATGTTCTTAACTAAGATC+GGG | - | chr3_4:41749222-41749241 | None:intergenic | 30.0% | |
ATATTGTATTCTTGCGTTGT+TGG | + | chr3_4:41749287-41749306 | Msa0501100:intron | 30.0% | |
GCTTTAATGTATTCAATACC+AGG | + | chr3_4:41749353-41749372 | Msa0501100:intron | 30.0% | |
GGTAAGTACCTATTGAAATT+TGG | + | chr3_4:41749389-41749408 | Msa0501100:intron | 30.0% | |
AATAAACAGTAACTGAGAGT+TGG | - | chr3_4:41749264-41749283 | None:intergenic | 30.0% | |
! | CATAACATACATTTTCTCCA+TGG | - | chr3_4:41749492-41749511 | None:intergenic | 30.0% |
GCTTTAATCTATTCAATACC+AGG | + | chr3_4:41749526-41749545 | Msa0501100:intron | 30.0% | |
GGTAAGTACATGTTGAAAAT+TGG | + | chr3_4:41749562-41749581 | Msa0501100:intron | 30.0% | |
GATAAGAGTTTATATAGAGG+AGG | - | chr3_4:41749632-41749651 | None:intergenic | 30.0% | |
! | TCTTTAGAAATGAAAAGCAC+TGG | + | chr3_4:41749764-41749783 | Msa0501100:intron | 30.0% |
CTTCAAAATCCCAAAATCAT+AGG | - | chr3_4:41750094-41750113 | None:intergenic | 30.0% | |
!! | TCATCCATTTGATTTTGTTG+TGG | + | chr3_4:41750177-41750196 | Msa0501100:CDS | 30.0% |
AACAAAAGTTATCCCGTAAT+AGG | + | chr3_4:41750404-41750423 | Msa0501100:CDS | 30.0% | |
ACAAAAGTTATCCCGTAATA+GGG | + | chr3_4:41750405-41750424 | Msa0501100:CDS | 30.0% | |
!! | CATTATTTTTCACATACACG+TGG | + | chr3_4:41750494-41750513 | Msa0501100:intron | 30.0% |
AGCTCAATTAATATAGAAGC+TGG | - | chr3_4:41750611-41750630 | None:intergenic | 30.0% | |
AACTTTATCAGATTACGTCA+AGG | - | chr3_4:41750736-41750755 | None:intergenic | 30.0% | |
TTGACGTAATCTGATAAAGT+TGG | + | chr3_4:41750735-41750754 | Msa0501100:intron | 30.0% | |
!!! | TTGTAGTTTTGACAGTATCT+AGG | + | chr3_4:41750764-41750783 | Msa0501100:intron | 30.0% |
TATCTAGGTGATACATGTAA+GGG | + | chr3_4:41750779-41750798 | Msa0501100:intron | 30.0% | |
!! | ATAAATATCCCATAATGGGT+CGG | + | chr3_4:41751174-41751193 | Msa0501100:intron | 30.0% |
ATACAGGTTCAATAAGATGT+GGG | - | chr3_4:41751293-41751312 | None:intergenic | 30.0% | |
AATACAGGTTCAATAAGATG+TGG | - | chr3_4:41751294-41751313 | None:intergenic | 30.0% | |
! | GATTTTCTGTTAAGTAGCAA+AGG | - | chr3_4:41751329-41751348 | None:intergenic | 30.0% |
ACAAATGAACTTCCAAGAAA+AGG | - | chr3_4:41751457-41751476 | None:intergenic | 30.0% | |
!! | CTTGGAAGTTCATTTGTTTT+AGG | + | chr3_4:41751460-41751479 | Msa0501100:intron | 30.0% |
CTATTGTTGGAGATAAGTTA+AGG | - | chr3_4:41751702-41751721 | None:intergenic | 30.0% | |
TTTGCTGATATACTGTGTAT+AGG | + | chr3_4:41751765-41751784 | Msa0501100:three_prime_UTR | 30.0% | |
TTCATATCAATAGCTGCTTC+GGG | - | chr3_4:41748559-41748578 | None:intergenic | 35.0% | |
CTTCATATCAATAGCTGCTT+CGG | - | chr3_4:41748560-41748579 | None:intergenic | 35.0% | |
GATATGAAGCAGAGGTTTAT+TGG | + | chr3_4:41748571-41748590 | Msa0501100:CDS | 35.0% | |
! | TCGTGAGTGAAATTGTGTTT+TGG | + | chr3_4:41748802-41748821 | Msa0501100:intron | 35.0% |
ACAGGAGAATAGTATGACTA+AGG | - | chr3_4:41748999-41749018 | None:intergenic | 35.0% | |
TTGGTAGGAACTTATGATCT+TGG | + | chr3_4:41749107-41749126 | Msa0501100:intron | 35.0% | |
! | ATCCTACCTGATTTAAGATC+GGG | - | chr3_4:41749166-41749185 | None:intergenic | 35.0% |
! | GATCCTACCTGATTTAAGAT+CGG | - | chr3_4:41749167-41749186 | None:intergenic | 35.0% |
ATACCAGGGTTACATTTACA+TGG | + | chr3_4:41749368-41749387 | Msa0501100:intron | 35.0% | |
TTACCATGTAAATGTAACCC+TGG | - | chr3_4:41749374-41749393 | None:intergenic | 35.0% | |
!!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr3_4:41749417-41749436 | None:intergenic | 35.0% |
!!! | AACTGAGAGTTGGTTTTGTA+AGG | - | chr3_4:41749427-41749446 | None:intergenic | 35.0% |
ATATGGTATTCTTGCGTTGT+TGG | + | chr3_4:41749460-41749479 | Msa0501100:intron | 35.0% | |
ATACCAGGGTTACATTTACA+TGG | + | chr3_4:41749368-41749387 | Msa0501100:intron | 35.0% | |
TTACCATGTAAATGTAACCC+TGG | - | chr3_4:41749374-41749393 | None:intergenic | 35.0% | |
!!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr3_4:41749417-41749436 | None:intergenic | 35.0% |
GTAAAAGAGACAGCTTAAGA+GGG | - | chr3_4:41749736-41749755 | None:intergenic | 35.0% | |
AGTAAAAGAGACAGCTTAAG+AGG | - | chr3_4:41749737-41749756 | None:intergenic | 35.0% | |
!! | GAAATGAAAAGCACTGGTTT+AGG | + | chr3_4:41749770-41749789 | Msa0501100:intron | 35.0% |
TAATTAAAACAGTCGCATGC+CGG | - | chr3_4:41749836-41749855 | None:intergenic | 35.0% | |
CAAGTGTGTGTGTTAAGATT+TGG | + | chr3_4:41749911-41749930 | Msa0501100:intron | 35.0% | |
ATGATGGCAGATGGTTTATT+TGG | + | chr3_4:41750006-41750025 | Msa0501100:CDS | 35.0% | |
TGATGGCAGATGGTTTATTT+GGG | + | chr3_4:41750007-41750026 | Msa0501100:CDS | 35.0% | |
TTTATTTGGGAAAAGCGAAC+TGG | + | chr3_4:41750020-41750039 | Msa0501100:CDS | 35.0% | |
AGCTTCAGATAACAGTACAA+GGG | - | chr3_4:41750121-41750140 | None:intergenic | 35.0% | |
TAGCTTCAGATAACAGTACA+AGG | - | chr3_4:41750122-41750141 | None:intergenic | 35.0% | |
TGTACGCAATTTACAACTGT+AGG | - | chr3_4:41750154-41750173 | None:intergenic | 35.0% | |
GTTGCCACAACAAAATCAAA+TGG | - | chr3_4:41750184-41750203 | None:intergenic | 35.0% | |
!! | ATTTTGTTGTGGCAACAAGT+GGG | + | chr3_4:41750188-41750207 | Msa0501100:CDS | 35.0% |
! | TGGGATTGATAACACGATAA+AGG | + | chr3_4:41750207-41750226 | Msa0501100:CDS | 35.0% |
!!! | GTGATGGATTTTCCTAGATA+TGG | + | chr3_4:41750293-41750312 | Msa0501100:intron | 35.0% |
! | ACAGCATTGAATCCCTATTA+CGG | - | chr3_4:41750420-41750439 | None:intergenic | 35.0% |
ATTTGACGGTGAAAATAAGC+AGG | + | chr3_4:41750538-41750557 | Msa0501100:intron | 35.0% | |
GTATCTAGGTGATACATGTA+AGG | + | chr3_4:41750778-41750797 | Msa0501100:intron | 35.0% | |
!!! | TCTGTTTTCGGAAGCATTAA+AGG | - | chr3_4:41750917-41750936 | None:intergenic | 35.0% |
! | CTAAATGGCTGATCTGTTTT+CGG | - | chr3_4:41750929-41750948 | None:intergenic | 35.0% |
TAACCACAGTATGTCCTAAA+TGG | - | chr3_4:41750944-41750963 | None:intergenic | 35.0% | |
!!! | TAGCTGATTCTTTTTTCTGC+AGG | + | chr3_4:41750962-41750981 | Msa0501100:intron | 35.0% |
!! | AATGGTTCTAAGAGCTCAAA+GGG | - | chr3_4:41750988-41751007 | None:intergenic | 35.0% |
!! | AAATGGTTCTAAGAGCTCAA+AGG | - | chr3_4:41750989-41751008 | None:intergenic | 35.0% |
GGAAACTCATGCATTCTAAA+TGG | - | chr3_4:41751006-41751025 | None:intergenic | 35.0% | |
! | ATCGGTGAATCTTTAGGTTT+GGG | - | chr3_4:41751064-41751083 | None:intergenic | 35.0% |
! | AATCGGTGAATCTTTAGGTT+TGG | - | chr3_4:41751065-41751084 | None:intergenic | 35.0% |
GTGAAAATCGGTGAATCTTT+AGG | - | chr3_4:41751070-41751089 | None:intergenic | 35.0% | |
AAAGAAATGAACTTACCAGC+AGG | - | chr3_4:41751092-41751111 | None:intergenic | 35.0% | |
GACCCATTATGGGATATTTA+TGG | - | chr3_4:41751175-41751194 | None:intergenic | 35.0% | |
AGGCAGAGTATATGAAATAC+AGG | - | chr3_4:41751309-41751328 | None:intergenic | 35.0% | |
TCATTTGTGAATAAGCAAGC+AGG | - | chr3_4:41751381-41751400 | None:intergenic | 35.0% | |
! | CGAAACAAGATACCTTTTCT+TGG | + | chr3_4:41751442-41751461 | Msa0501100:intron | 35.0% |
TGGATTGAGATGATTCAGAT+GGG | + | chr3_4:41751576-41751595 | Msa0501100:three_prime_UTR | 35.0% | |
! | TTTAAAATGTCTCCCATGCT+TGG | - | chr3_4:41751605-41751624 | None:intergenic | 35.0% |
ATATCAGCAAACATGGCAAT+CGG | - | chr3_4:41751756-41751775 | None:intergenic | 35.0% | |
ACACAGTATATCAGCAAACA+TGG | - | chr3_4:41751763-41751782 | None:intergenic | 35.0% | |
!! | TACTGTGTATAGGTTTTTGG+TGG | + | chr3_4:41751775-41751794 | Msa0501100:three_prime_UTR | 35.0% |
CAGCTATTGATATGAAGCAG+AGG | + | chr3_4:41748563-41748582 | Msa0501100:CDS | 40.0% | |
! | TTTATTGGGCACTGCAATGT+GGG | + | chr3_4:41748586-41748605 | Msa0501100:CDS | 40.0% |
TGTGGGGACTGATATAAAAC+AGG | + | chr3_4:41748603-41748622 | Msa0501100:CDS | 40.0% | |
ATCATGAGTGAAATCGCGTT+TGG | + | chr3_4:41748829-41748848 | Msa0501100:intron | 40.0% | |
TCATGAGTGAAATCGCGTTT+GGG | + | chr3_4:41748830-41748849 | Msa0501100:intron | 40.0% | |
!!! | TTTAGCGGTTTTGTTCAGCT+GGG | - | chr3_4:41748945-41748964 | None:intergenic | 40.0% |
!!! | TTTTAGCGGTTTTGTTCAGC+TGG | - | chr3_4:41748946-41748965 | None:intergenic | 40.0% |
! | AGGGTTTAGTCACGTTTTAG+CGG | - | chr3_4:41748960-41748979 | None:intergenic | 40.0% |
AGAAACAGAGCAATCACAAC+AGG | - | chr3_4:41749017-41749036 | None:intergenic | 40.0% | |
TTGGAGAGAAGAGAGATGAA+GGG | - | chr3_4:41749063-41749082 | None:intergenic | 40.0% | |
ATTGGAGAGAAGAGAGATGA+AGG | - | chr3_4:41749064-41749083 | None:intergenic | 40.0% | |
TACACTCCCGATCTTAAATC+AGG | + | chr3_4:41749157-41749176 | Msa0501100:intron | 40.0% | |
TTCTTAACTAAGATCGGGAG+GGG | - | chr3_4:41749217-41749236 | None:intergenic | 40.0% | |
GTTCTTAACTAAGATCGGGA+GGG | - | chr3_4:41749218-41749237 | None:intergenic | 40.0% | |
TGTTCTTAACTAAGATCGGG+AGG | - | chr3_4:41749219-41749238 | None:intergenic | 40.0% | |
GTTAGGCCCCAAATTTCAAT+AGG | - | chr3_4:41749400-41749419 | None:intergenic | 40.0% | |
!!! | CCTTACAAGCTGGTTTTGTA+AGG | - | chr3_4:41749600-41749619 | None:intergenic | 40.0% |
CCTTACAAAACCAGCTTGTA+AGG | + | chr3_4:41749597-41749616 | Msa0501100:intron | 40.0% | |
! | AGAGTCTTATCTATCCGATG+TGG | + | chr3_4:41749653-41749672 | Msa0501100:intron | 40.0% |
! | GAGTCTTATCTATCCGATGT+GGG | + | chr3_4:41749654-41749673 | Msa0501100:intron | 40.0% |
GGCAACAGTTTGGTACTATT+GGG | - | chr3_4:41749692-41749711 | None:intergenic | 40.0% | |
CAGAACGAGGAGATTCATTA+TGG | - | chr3_4:41749864-41749883 | None:intergenic | 40.0% | |
GAGATGAACAAATCAGAACG+AGG | - | chr3_4:41749877-41749896 | None:intergenic | 40.0% | |
ATAGGTGAATATGTTGCCAG+CGG | + | chr3_4:41749978-41749997 | Msa0501100:intron | 40.0% | |
AGACTCATGAAATTGCTGAG+TGG | + | chr3_4:41750044-41750063 | Msa0501100:CDS | 40.0% | |
TTCAGATAACAGTACAAGGG+GGG | - | chr3_4:41750118-41750137 | None:intergenic | 40.0% | |
CTTCAGATAACAGTACAAGG+GGG | - | chr3_4:41750119-41750138 | None:intergenic | 40.0% | |
GCTTCAGATAACAGTACAAG+GGG | - | chr3_4:41750120-41750139 | None:intergenic | 40.0% | |
!! | GATTTTGTTGTGGCAACAAG+TGG | + | chr3_4:41750187-41750206 | Msa0501100:CDS | 40.0% |
!! | TTTCAATCTCTGAAGCTGTC+TGG | + | chr3_4:41750271-41750290 | Msa0501100:intron | 40.0% |
! | CAGCATTGAATCCCTATTAC+GGG | - | chr3_4:41750419-41750438 | None:intergenic | 40.0% |
TATTGAGAAGTGATGCAGCT+AGG | + | chr3_4:41750466-41750485 | Msa0501100:intron | 40.0% | |
GAGCTACTGCTGTTAATGTT+AGG | + | chr3_4:41750626-41750645 | Msa0501100:intron | 40.0% | |
TAGGTGATACATGTAAGGGT+TGG | + | chr3_4:41750783-41750802 | Msa0501100:intron | 40.0% | |
CGAAAACAGATCAGCCATTT+AGG | + | chr3_4:41750927-41750946 | Msa0501100:intron | 40.0% | |
AGAATGCATGAGTTTCCTGA+AGG | + | chr3_4:41751009-41751028 | Msa0501100:CDS | 40.0% | |
TAGGTTTGGGCACATTCAAA+AGG | - | chr3_4:41751051-41751070 | None:intergenic | 40.0% | |
ACTTACCAGCAGGTGAAAAT+CGG | - | chr3_4:41751082-41751101 | None:intergenic | 40.0% | |
CTGGATTGAGATGATTCAGA+TGG | + | chr3_4:41751575-41751594 | Msa0501100:three_prime_UTR | 40.0% | |
GGATTGAGATGATTCAGATG+GGG | + | chr3_4:41751577-41751596 | Msa0501100:three_prime_UTR | 40.0% | |
! | GTTTATTGGGCACTGCAATG+TGG | + | chr3_4:41748585-41748604 | Msa0501100:CDS | 45.0% |
! | TTATTGGGCACTGCAATGTG+GGG | + | chr3_4:41748587-41748606 | Msa0501100:CDS | 45.0% |
! | CGATTTTGCGATTCTACGAC+TGG | + | chr3_4:41748766-41748785 | Msa0501100:intron | 45.0% |
TCACTCACGATCCATATTCC+AGG | - | chr3_4:41748792-41748811 | None:intergenic | 45.0% | |
CAGTACAGTCGCAAATTGTG+TGG | - | chr3_4:41748865-41748884 | None:intergenic | 45.0% | |
TTTGCGACTGTACTGCAGTT+TGG | + | chr3_4:41748870-41748889 | Msa0501100:intron | 45.0% | |
TTGCGACTGTACTGCAGTTT+GGG | + | chr3_4:41748871-41748890 | Msa0501100:intron | 45.0% | |
GACAGAGCAATCACAACAGT+CGG | - | chr3_4:41749041-41749060 | None:intergenic | 45.0% | |
CTCCCGATCTTAAATCAGGT+AGG | + | chr3_4:41749161-41749180 | Msa0501100:intron | 45.0% | |
GGGTAGCAAAATCGTAACTG+GGG | - | chr3_4:41749196-41749215 | None:intergenic | 45.0% | |
GGGGTAGCAAAATCGTAACT+GGG | - | chr3_4:41749197-41749216 | None:intergenic | 45.0% | |
TCTTAACTAAGATCGGGAGG+GGG | - | chr3_4:41749216-41749235 | None:intergenic | 45.0% | |
CAAAACCAGCTTGTAAGGTG+AGG | + | chr3_4:41749602-41749621 | Msa0501100:intron | 45.0% | |
TATCTATCCGATGTGGGACT+TGG | + | chr3_4:41749660-41749679 | Msa0501100:intron | 45.0% | |
ATCTATCCGATGTGGGACTT+GGG | + | chr3_4:41749661-41749680 | Msa0501100:intron | 45.0% | |
GAAAAACCCAAGTCCCACAT+CGG | - | chr3_4:41749670-41749689 | None:intergenic | 45.0% | |
GGGCAACAGTTTGGTACTAT+TGG | - | chr3_4:41749693-41749712 | None:intergenic | 45.0% | |
CTACTTCAAGGGCAACAGTT+TGG | - | chr3_4:41749702-41749721 | None:intergenic | 45.0% | |
GGTGATATGTGCATAGACAC+AGG | + | chr3_4:41749791-41749810 | Msa0501100:intron | 45.0% | |
AGCACTTGGAGTCCATATCT+AGG | - | chr3_4:41750308-41750327 | None:intergenic | 45.0% | |
! | ACCAGAAACTGGTGATGTGT+TGG | + | chr3_4:41750363-41750382 | Msa0501100:CDS | 45.0% |
! | CCAGAAACTGGTGATGTGTT+GGG | + | chr3_4:41750364-41750383 | Msa0501100:CDS | 45.0% |
! | CAGCCATTTAGGACATACTG+TGG | + | chr3_4:41750938-41750957 | Msa0501100:intron | 45.0% |
!!! | ATTCACCGATTTTCACCTGC+TGG | + | chr3_4:41751074-41751093 | Msa0501100:three_prime_UTR | 45.0% |
!! | TATCCCATAATGGGTCGGTT+TGG | + | chr3_4:41751179-41751198 | Msa0501100:intron | 45.0% |
!! | AAATAATATTCTATATATAT+TGG | - | chr3_4:41749082-41749101 | None:intergenic | 5.0% |
!! | TAATTATTGAATTATTATAA+AGG | + | chr3_4:41751498-41751517 | Msa0501100:intron | 5.0% |
!! | TCTACGACTGGCCTGGAATA+TGG | + | chr3_4:41748778-41748797 | Msa0501100:intron | 50.0% |
!! | TGTACTGCAGTTTGGGTTGC+TGG | + | chr3_4:41748878-41748897 | Msa0501100:intron | 50.0% |
TGGAATAGCGCCTCACATTC+TGG | + | chr3_4:41748898-41748917 | Msa0501100:intron | 50.0% | |
GGAATAGCGCCTCACATTCT+GGG | + | chr3_4:41748899-41748918 | Msa0501100:intron | 50.0% | |
GGGGGTAGCAAAATCGTAAC+TGG | - | chr3_4:41749198-41749217 | None:intergenic | 50.0% | |
TGCGTTGTTGGAGTTTGCGA+TGG | + | chr3_4:41749299-41749318 | Msa0501100:intron | 50.0% | |
TGCGTTGTTGGAGTTTGCCA+TGG | + | chr3_4:41749472-41749491 | Msa0501100:intron | 50.0% | |
GCAATCCTCACCTTACAAGC+TGG | - | chr3_4:41749610-41749629 | None:intergenic | 50.0% | |
TTGCTGAGTGGCGATGAATC+TGG | + | chr3_4:41750056-41750075 | Msa0501100:CDS | 50.0% | |
!! | TCTCTGAAGCTGTCTGGTGA+TGG | + | chr3_4:41750277-41750296 | Msa0501100:intron | 50.0% |
!! | GAAGATGCAACAGGAGCACT+TGG | - | chr3_4:41750322-41750341 | None:intergenic | 50.0% |
CCAGCTACAGAAGATGCAAC+AGG | - | chr3_4:41750331-41750350 | None:intergenic | 50.0% | |
CCTGTTGCATCTTCTGTAGC+TGG | + | chr3_4:41750328-41750347 | Msa0501100:CDS | 50.0% | |
GTTGCATCTTCTGTAGCTGG+TGG | + | chr3_4:41750331-41750350 | Msa0501100:CDS | 50.0% | |
CCCAACACATCACCAGTTTC+TGG | - | chr3_4:41750367-41750386 | None:intergenic | 50.0% | |
! | TGGTGATGTGTTGGGTGCTA+TGG | + | chr3_4:41750372-41750391 | Msa0501100:CDS | 50.0% |
CCACCAAACCGACCCATTAT+GGG | - | chr3_4:41751185-41751204 | None:intergenic | 50.0% | |
CTGCAGTGGTACAGAAGGAA+AGG | - | chr3_4:41751528-41751547 | None:intergenic | 50.0% | |
CTTTCCTTCTGTACCACTGC+AGG | + | chr3_4:41751526-41751545 | Msa0501100:intron | 50.0% | |
! | ACCACTGCAGGTGCTATGTT+CGG | + | chr3_4:41751538-41751557 | Msa0501100:intron | 50.0% |
TTCGGCGGTACTTGTGAATC+TGG | + | chr3_4:41751556-41751575 | Msa0501100:three_prime_UTR | 50.0% | |
! | TTGCGATTCTACGACTGGCC+TGG | + | chr3_4:41748771-41748790 | Msa0501100:intron | 55.0% |
GTTGCCAGCGGTAGTGATGA+TGG | + | chr3_4:41749990-41750009 | Msa0501100:CDS | 55.0% | |
TCTGCCATCATCACTACCGC+TGG | - | chr3_4:41749997-41750016 | None:intergenic | 55.0% | |
!! | GCGGTAGTGATGATGGCAGA+TGG | + | chr3_4:41749997-41750016 | Msa0501100:CDS | 55.0% |
! | TCTGTAGCTGGTGGTTCTGC+AGG | + | chr3_4:41750340-41750359 | Msa0501100:CDS | 55.0% |
GGTTCTGCAGGACCAGAAAC+TGG | + | chr3_4:41750352-41750371 | Msa0501100:CDS | 55.0% | |
CGCAAGCGTAGTGATCCTTC+AGG | - | chr3_4:41751027-41751046 | None:intergenic | 55.0% | |
!! | CCCATAATGGGTCGGTTTGG+TGG | + | chr3_4:41751182-41751201 | Msa0501100:intron | 55.0% |
GCCACCAAACCGACCCATTA+TGG | - | chr3_4:41751186-41751205 | None:intergenic | 55.0% | |
AGCACCTGCAGTGGTACAGA+AGG | - | chr3_4:41751533-41751552 | None:intergenic | 55.0% | |
! | ACTGCAGGTGCTATGTTCGG+CGG | + | chr3_4:41751541-41751560 | Msa0501100:intron | 55.0% |
TTCAGATGGGGAGCCAAGCA+TGG | + | chr3_4:41751589-41751608 | Msa0501100:three_prime_UTR | 55.0% | |
TCAGATGGGGAGCCAAGCAT+GGG | + | chr3_4:41751590-41751609 | Msa0501100:three_prime_UTR | 55.0% | |
TAGCGCCTCACATTCTGGGC+CGG | + | chr3_4:41748903-41748922 | Msa0501100:intron | 60.0% | |
GCCGAACATAGCACCTGCAG+TGG | - | chr3_4:41751542-41751561 | None:intergenic | 60.0% | |
AGCGCCTCACATTCTGGGCC+GGG | + | chr3_4:41748904-41748923 | Msa0501100:intron | 65.0% | |
CCTCACATTCTGGGCCGGGT+CGG | + | chr3_4:41748908-41748927 | Msa0501100:intron | 65.0% | |
CTCACATTCTGGGCCGGGTC+GGG | + | chr3_4:41748909-41748928 | Msa0501100:intron | 65.0% | |
GGGTTGTGCAGAACCCGACC+CGG | - | chr3_4:41748925-41748944 | None:intergenic | 65.0% | |
CCGACCCGGCCCAGAATGTG+AGG | - | chr3_4:41748911-41748930 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 41748548 | 41751887 | 41748548 | ID=Msa0501100;Name=Msa0501100 |
chr3_4 | mRNA | 41748548 | 41751887 | 41748548 | ID=Msa0501100-mRNA-1;Parent=Msa0501100;Name=Msa0501100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=2|1|1|1|0.8|0.66|6|364|159 |
chr3_4 | exon | 41748548 | 41748646 | 41748548 | ID=Msa0501100-mRNA-1:exon:8773;Parent=Msa0501100-mRNA-1 |
chr3_4 | exon | 41749982 | 41750077 | 41749982 | ID=Msa0501100-mRNA-1:exon:8774;Parent=Msa0501100-mRNA-1 |
chr3_4 | exon | 41750158 | 41750228 | 41750158 | ID=Msa0501100-mRNA-1:exon:8775;Parent=Msa0501100-mRNA-1 |
chr3_4 | exon | 41750310 | 41750437 | 41750310 | ID=Msa0501100-mRNA-1:exon:8776;Parent=Msa0501100-mRNA-1 |
chr3_4 | exon | 41750984 | 41751095 | 41750984 | ID=Msa0501100-mRNA-1:exon:8777;Parent=Msa0501100-mRNA-1 |
chr3_4 | exon | 41751548 | 41751887 | 41751548 | ID=Msa0501100-mRNA-1:exon:8778;Parent=Msa0501100-mRNA-1 |
chr3_4 | five_prime_UTR | 41748548 | 41748549 | 41748548 | ID=Msa0501100-mRNA-1:five_prime_utr;Parent=Msa0501100-mRNA-1 |
chr3_4 | CDS | 41748550 | 41748646 | 41748550 | ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1 |
chr3_4 | CDS | 41749982 | 41750077 | 41749982 | ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1 |
chr3_4 | CDS | 41750158 | 41750228 | 41750158 | ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1 |
chr3_4 | CDS | 41750310 | 41750437 | 41750310 | ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1 |
chr3_4 | CDS | 41750984 | 41751071 | 41750984 | ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1 |
chr3_4 | three_prime_UTR | 41751072 | 41751095 | 41751072 | ID=Msa0501100-mRNA-1:three_prime_utr;Parent=Msa0501100-mRNA-1 |
chr3_4 | three_prime_UTR | 41751548 | 41751887 | 41751548 | ID=Msa0501100-mRNA-1:three_prime_utr;Parent=Msa0501100-mRNA-1 |
Gene Sequence |
Protein sequence |