AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501100 MtrunA17_Chr3g0133201 100.000 158 0 0 2 159 602 759 1.88e-113 338
Msa0501100 MtrunA17_Chr1g0211421 51.190 84 40 1 11 94 326 408 4.04e-22 91.7
Msa0501100 MtrunA17_Chr2g0325981 34.848 132 76 3 11 141 303 425 2.32e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501100 AT5G10940.2 73.418 158 40 1 2 159 599 754 1.79e-81 255
Msa0501100 AT5G10940.1 73.418 158 40 1 2 159 602 757 1.94e-81 255
Msa0501100 AT4G35140.1 48.780 82 41 1 13 94 327 407 4.22e-20 86.3
Msa0501100 AT4G35140.2 48.780 82 41 1 13 94 327 407 8.39e-20 85.5
Msa0501100 AT4G38480.1 50.000 82 40 1 11 92 301 381 9.65e-20 85.1
Msa0501100 AT4G38480.2 50.000 82 40 1 11 92 268 348 1.05e-19 85.1
Msa0501100 AT3G45620.1 43.617 94 50 2 1 92 300 392 3.37e-19 83.6
Msa0501100 AT3G45620.2 43.617 94 50 2 1 92 334 426 3.40e-19 83.6

Find 60 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATGAAGCAGAGGTTTAT+TGG 0.225807 3_4:+41748571 Msa0501100:CDS
ATGATGGCAGATGGTTTATT+TGG 0.232067 3_4:+41750006 Msa0501100:CDS
AACAAAAGTTATCCCGTAAT+AGG 0.237900 3_4:+41750404 Msa0501100:CDS
GAAACATGGAAAGTAAATTA+TGG 0.240219 3_4:+41751636 Msa0501100:three_prime_UTR
GTGAAAATCGGTGAATCTTT+AGG 0.266556 3_4:-41751067 None:intergenic
GGAAACTCATGCATTCTAAA+TGG 0.278208 3_4:-41751003 None:intergenic
ATCGGTGAATCTTTAGGTTT+GGG 0.313382 3_4:-41751061 None:intergenic
CTTCATATCAATAGCTGCTT+CGG 0.322899 3_4:-41748557 None:intergenic
CCCAACACATCACCAGTTTC+TGG 0.324612 3_4:-41750364 None:intergenic
TTCGGCGGTACTTGTGAATC+TGG 0.352998 3_4:+41751556 Msa0501100:three_prime_UTR
ATATGAAGCAGAGGTTTATT+GGG 0.354463 3_4:+41748572 Msa0501100:CDS
AGTAAATTATGGGTATTATC+TGG 0.357292 3_4:+41751647 Msa0501100:three_prime_UTR
AATCGGTGAATCTTTAGGTT+TGG 0.358671 3_4:-41751062 None:intergenic
TTTGCTGATATACTGTGTAT+AGG 0.384474 3_4:+41751765 Msa0501100:three_prime_UTR
ACAAAAGTTATCCCGTAATA+GGG 0.403715 3_4:+41750405 Msa0501100:CDS
CAGCATTGAATCCCTATTAC+GGG 0.403849 3_4:-41750416 None:intergenic
AAACATGGAAAGTAAATTAT+GGG 0.407287 3_4:+41751637 Msa0501100:three_prime_UTR
ACAGCATTGAATCCCTATTA+CGG 0.407538 3_4:-41750417 None:intergenic
TTTAAAATGTCTCCCATGCT+TGG 0.407815 3_4:-41751602 None:intergenic
TCTGTAGCTGGTGGTTCTGC+AGG 0.414277 3_4:+41750340 Msa0501100:CDS
TGATGGCAGATGGTTTATTT+GGG 0.418000 3_4:+41750007 Msa0501100:CDS
TTCATATCAATAGCTGCTTC+GGG 0.434684 3_4:-41748556 None:intergenic
CCTGTTGCATCTTCTGTAGC+TGG 0.440848 3_4:+41750328 Msa0501100:CDS
TGGGATTGATAACACGATAA+AGG 0.444355 3_4:+41750207 Msa0501100:CDS
CTATTGTTGGAGATAAGTTA+AGG 0.460225 3_4:-41751699 None:intergenic
CGCAAGCGTAGTGATCCTTC+AGG 0.461853 3_4:-41751024 None:intergenic
GTTGCCACAACAAAATCAAA+TGG 0.472347 3_4:-41750181 None:intergenic
TGGTGATGTGTTGGGTGCTA+TGG 0.474086 3_4:+41750372 Msa0501100:CDS
TTTATTTGGGAAAAGCGAAC+TGG 0.476711 3_4:+41750020 Msa0501100:CDS
TTTATTGGGCACTGCAATGT+GGG 0.483595 3_4:+41748586 Msa0501100:CDS
TGTGGGGACTGATATAAAAC+AGG 0.487794 3_4:+41748603 Msa0501100:CDS
TAGGTTTGGGCACATTCAAA+AGG 0.492710 3_4:-41751048 None:intergenic
ACCACTGCAGGTGCTATGTT+CGG 0.498241 3_4:+41751538 Msa0501100:intron
ACTTACCAGCAGGTGAAAAT+CGG 0.501154 3_4:-41751079 None:intergenic
GGTTCTGCAGGACCAGAAAC+TGG 0.510294 3_4:+41750352 Msa0501100:CDS
TTGCTGAGTGGCGATGAATC+TGG 0.510859 3_4:+41750056 Msa0501100:CDS
AATGGTTCTAAGAGCTCAAA+GGG 0.521850 3_4:-41750985 None:intergenic
CCAGCTACAGAAGATGCAAC+AGG 0.527365 3_4:-41750328 None:intergenic
CTGGATTGAGATGATTCAGA+TGG 0.527915 3_4:+41751575 Msa0501100:three_prime_UTR
ATATCAGCAAACATGGCAAT+CGG 0.532176 3_4:-41751753 None:intergenic
TTCAGATGGGGAGCCAAGCA+TGG 0.533212 3_4:+41751589 Msa0501100:three_prime_UTR
GAAGATGCAACAGGAGCACT+TGG 0.539197 3_4:-41750319 None:intergenic
CCAGAAACTGGTGATGTGTT+GGG 0.549316 3_4:+41750364 Msa0501100:CDS
ACCAGAAACTGGTGATGTGT+TGG 0.557320 3_4:+41750363 Msa0501100:CDS
TGGATTGAGATGATTCAGAT+GGG 0.565147 3_4:+41751576 Msa0501100:three_prime_UTR
AAATGGTTCTAAGAGCTCAA+AGG 0.570232 3_4:-41750986 None:intergenic
GTTGCCAGCGGTAGTGATGA+TGG 0.581492 3_4:+41749990 Msa0501100:CDS
AGAATGCATGAGTTTCCTGA+AGG 0.588086 3_4:+41751009 Msa0501100:CDS
TCAGATGGGGAGCCAAGCAT+GGG 0.595746 3_4:+41751590 Msa0501100:three_prime_UTR
GTTTATTGGGCACTGCAATG+TGG 0.610985 3_4:+41748585 Msa0501100:CDS
TCTGCCATCATCACTACCGC+TGG 0.617059 3_4:-41749994 None:intergenic
ACACAGTATATCAGCAAACA+TGG 0.623834 3_4:-41751760 None:intergenic
GCGGTAGTGATGATGGCAGA+TGG 0.626278 3_4:+41749997 Msa0501100:CDS
TTATTGGGCACTGCAATGTG+GGG 0.632042 3_4:+41748587 Msa0501100:CDS
GTTGCATCTTCTGTAGCTGG+TGG 0.634469 3_4:+41750331 Msa0501100:CDS
CAGCTATTGATATGAAGCAG+AGG 0.640848 3_4:+41748563 Msa0501100:CDS
ATAGGTGAATATGTTGCCAG+CGG 0.668912 3_4:+41749978 Msa0501100:intron
ACTGCAGGTGCTATGTTCGG+CGG 0.684957 3_4:+41751541 Msa0501100:intron
GGATTGAGATGATTCAGATG+GGG 0.686877 3_4:+41751577 Msa0501100:three_prime_UTR
AGACTCATGAAATTGCTGAG+TGG 0.779389 3_4:+41750044 Msa0501100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAACTATTTTTAATTCA+GGG - chr3_4:41751802-41751821 None:intergenic 10.0%
!!! TAATTAACTATTTTTAATTC+AGG - chr3_4:41751803-41751822 None:intergenic 10.0%
!!! TATAATTTTATCTACTTCAA+GGG - chr3_4:41749713-41749732 None:intergenic 15.0%
!! CAAAATAAAAATTGCAAATA+TGG - chr3_4:41749938-41749957 None:intergenic 15.0%
!!! AATGTTTTGTAAACAAAAAT+TGG - chr3_4:41751265-41751284 None:intergenic 15.0%
!!! ATAGTGTTGATTTTTTAAAA+AGG + chr3_4:41751718-41751737 Msa0501100:three_prime_UTR 15.0%
!!! ATAGAATATTATTTCCGTTT+TGG + chr3_4:41749088-41749107 Msa0501100:intron 20.0%
!!! AGTTACTGTTTATTTTCATA+TGG + chr3_4:41749270-41749289 Msa0501100:intron 20.0%
!!! GTATAATTTTATCTACTTCA+AGG - chr3_4:41749714-41749733 None:intergenic 20.0%
!!! ACAGTTTTATTGTATATTTC+CGG + chr3_4:41749814-41749833 Msa0501100:intron 20.0%
!! ATCATTATTCTATGATGTAT+TGG + chr3_4:41750235-41750254 Msa0501100:intron 20.0%
!! TCATTATTCTATGATGTATT+GGG + chr3_4:41750236-41750255 Msa0501100:intron 20.0%
!!! CAAGTAAATTTGTTAATATC+AGG + chr3_4:41750571-41750590 Msa0501100:intron 20.0%
!!! AAAAAGAATAAGTTGAAACA+TGG + chr3_4:41751622-41751641 Msa0501100:three_prime_UTR 20.0%
!! AAACATGGAAAGTAAATTAT+GGG + chr3_4:41751637-41751656 Msa0501100:three_prime_UTR 20.0%
!! TAAAAAATCAACACTATTGT+TGG - chr3_4:41751715-41751734 None:intergenic 20.0%
!! ATAAAACAGGCTAATTTTCT+TGG + chr3_4:41748616-41748635 Msa0501100:CDS 25.0%
!! AGGTAAAGTTCACTATTTTA+GGG - chr3_4:41748979-41748998 None:intergenic 25.0%
!! AAGGTAAAGTTCACTATTTT+AGG - chr3_4:41748980-41748999 None:intergenic 25.0%
!!! AATATTATTTCCGTTTTGGT+AGG + chr3_4:41749092-41749111 Msa0501100:intron 25.0%
! ATCATGTTCTTAACTAAGAT+CGG - chr3_4:41749223-41749242 None:intergenic 25.0%
!! ACATTAAAGCAAATCGTTTT+TGG - chr3_4:41749343-41749362 None:intergenic 25.0%
! CTTTAATGTATTCAATACCA+GGG + chr3_4:41749354-41749373 Msa0501100:intron 25.0%
! GTAAGTACCTATTGAAATTT+GGG + chr3_4:41749390-41749409 Msa0501100:intron 25.0%
! TAAGTACCTATTGAAATTTG+GGG + chr3_4:41749391-41749410 Msa0501100:intron 25.0%
!! AGATTAAAGCAAATCGTTTT+TGG - chr3_4:41749516-41749535 None:intergenic 25.0%
! CTTTAATCTATTCAATACCA+GGG + chr3_4:41749527-41749546 Msa0501100:intron 25.0%
! GTAAGTACATGTTGAAAATT+GGG + chr3_4:41749563-41749582 Msa0501100:intron 25.0%
! TAAGTACATGTTGAAAATTG+GGG + chr3_4:41749564-41749583 Msa0501100:intron 25.0%
! CTTGATAAGAGTTTATATAG+AGG - chr3_4:41749635-41749654 None:intergenic 25.0%
! CTTCTCACTTGTATATTTAT+AGG + chr3_4:41749960-41749979 Msa0501100:intron 25.0%
!! ACATTGTTTTCCTATGATTT+TGG + chr3_4:41750081-41750100 Msa0501100:intron 25.0%
!! CATTGTTTTCCTATGATTTT+GGG + chr3_4:41750082-41750101 Msa0501100:intron 25.0%
! CATTATTCTATGATGTATTG+GGG + chr3_4:41750237-41750256 Msa0501100:intron 25.0%
! TCACTTCTCAATACTATATA+GGG - chr3_4:41750459-41750478 None:intergenic 25.0%
! ATCACTTCTCAATACTATAT+AGG - chr3_4:41750460-41750479 None:intergenic 25.0%
!! TGTCTTTCAAGTAAATTTGA+CGG + chr3_4:41750524-41750543 Msa0501100:intron 25.0%
! AGATAAGAAATTTATGCAGT+TGG - chr3_4:41750662-41750681 None:intergenic 25.0%
! AATAACTTCTTGGTTATACA+AGG - chr3_4:41751148-41751167 None:intergenic 25.0%
! TTATGGTATCAATAACTTCT+TGG - chr3_4:41751158-41751177 None:intergenic 25.0%
! ATACCATAAATATCCCATAA+TGG + chr3_4:41751169-41751188 Msa0501100:intron 25.0%
! TACCATAAATATCCCATAAT+GGG + chr3_4:41751170-41751189 Msa0501100:intron 25.0%
! ATCCTTACAAAAAAACACAT+AGG + chr3_4:41751346-41751365 Msa0501100:intron 25.0%
!!! ATCCTATGTGTTTTTTTGTA+AGG - chr3_4:41751351-41751370 None:intergenic 25.0%
!!! TTGGAAGTTCATTTGTTTTA+GGG + chr3_4:41751461-41751480 Msa0501100:intron 25.0%
! GAAACATGGAAAGTAAATTA+TGG + chr3_4:41751636-41751655 Msa0501100:three_prime_UTR 25.0%
! AGTAAATTATGGGTATTATC+TGG + chr3_4:41751647-41751666 Msa0501100:three_prime_UTR 25.0%
!! ATATACTGTGTATAGGTTTT+TGG + chr3_4:41751772-41751791 Msa0501100:three_prime_UTR 25.0%
ATATGAAGCAGAGGTTTATT+GGG + chr3_4:41748572-41748591 Msa0501100:CDS 30.0%
! GCTAATTTTCTTGGTCAAAA+AGG + chr3_4:41748625-41748644 Msa0501100:CDS 30.0%
AATTGAAGTTATCAATGTCG+TGG + chr3_4:41748724-41748743 Msa0501100:intron 30.0%
ATCATAAGTTCCTACCAAAA+CGG - chr3_4:41749105-41749124 None:intergenic 30.0%
TCATGTTCTTAACTAAGATC+GGG - chr3_4:41749222-41749241 None:intergenic 30.0%
ATATTGTATTCTTGCGTTGT+TGG + chr3_4:41749287-41749306 Msa0501100:intron 30.0%
GCTTTAATGTATTCAATACC+AGG + chr3_4:41749353-41749372 Msa0501100:intron 30.0%
GGTAAGTACCTATTGAAATT+TGG + chr3_4:41749389-41749408 Msa0501100:intron 30.0%
AATAAACAGTAACTGAGAGT+TGG - chr3_4:41749264-41749283 None:intergenic 30.0%
! CATAACATACATTTTCTCCA+TGG - chr3_4:41749492-41749511 None:intergenic 30.0%
GCTTTAATCTATTCAATACC+AGG + chr3_4:41749526-41749545 Msa0501100:intron 30.0%
GGTAAGTACATGTTGAAAAT+TGG + chr3_4:41749562-41749581 Msa0501100:intron 30.0%
GATAAGAGTTTATATAGAGG+AGG - chr3_4:41749632-41749651 None:intergenic 30.0%
! TCTTTAGAAATGAAAAGCAC+TGG + chr3_4:41749764-41749783 Msa0501100:intron 30.0%
CTTCAAAATCCCAAAATCAT+AGG - chr3_4:41750094-41750113 None:intergenic 30.0%
!! TCATCCATTTGATTTTGTTG+TGG + chr3_4:41750177-41750196 Msa0501100:CDS 30.0%
AACAAAAGTTATCCCGTAAT+AGG + chr3_4:41750404-41750423 Msa0501100:CDS 30.0%
ACAAAAGTTATCCCGTAATA+GGG + chr3_4:41750405-41750424 Msa0501100:CDS 30.0%
!! CATTATTTTTCACATACACG+TGG + chr3_4:41750494-41750513 Msa0501100:intron 30.0%
AGCTCAATTAATATAGAAGC+TGG - chr3_4:41750611-41750630 None:intergenic 30.0%
AACTTTATCAGATTACGTCA+AGG - chr3_4:41750736-41750755 None:intergenic 30.0%
TTGACGTAATCTGATAAAGT+TGG + chr3_4:41750735-41750754 Msa0501100:intron 30.0%
!!! TTGTAGTTTTGACAGTATCT+AGG + chr3_4:41750764-41750783 Msa0501100:intron 30.0%
TATCTAGGTGATACATGTAA+GGG + chr3_4:41750779-41750798 Msa0501100:intron 30.0%
!! ATAAATATCCCATAATGGGT+CGG + chr3_4:41751174-41751193 Msa0501100:intron 30.0%
ATACAGGTTCAATAAGATGT+GGG - chr3_4:41751293-41751312 None:intergenic 30.0%
AATACAGGTTCAATAAGATG+TGG - chr3_4:41751294-41751313 None:intergenic 30.0%
! GATTTTCTGTTAAGTAGCAA+AGG - chr3_4:41751329-41751348 None:intergenic 30.0%
ACAAATGAACTTCCAAGAAA+AGG - chr3_4:41751457-41751476 None:intergenic 30.0%
!! CTTGGAAGTTCATTTGTTTT+AGG + chr3_4:41751460-41751479 Msa0501100:intron 30.0%
CTATTGTTGGAGATAAGTTA+AGG - chr3_4:41751702-41751721 None:intergenic 30.0%
TTTGCTGATATACTGTGTAT+AGG + chr3_4:41751765-41751784 Msa0501100:three_prime_UTR 30.0%
TTCATATCAATAGCTGCTTC+GGG - chr3_4:41748559-41748578 None:intergenic 35.0%
CTTCATATCAATAGCTGCTT+CGG - chr3_4:41748560-41748579 None:intergenic 35.0%
GATATGAAGCAGAGGTTTAT+TGG + chr3_4:41748571-41748590 Msa0501100:CDS 35.0%
! TCGTGAGTGAAATTGTGTTT+TGG + chr3_4:41748802-41748821 Msa0501100:intron 35.0%
ACAGGAGAATAGTATGACTA+AGG - chr3_4:41748999-41749018 None:intergenic 35.0%
TTGGTAGGAACTTATGATCT+TGG + chr3_4:41749107-41749126 Msa0501100:intron 35.0%
! ATCCTACCTGATTTAAGATC+GGG - chr3_4:41749166-41749185 None:intergenic 35.0%
! GATCCTACCTGATTTAAGAT+CGG - chr3_4:41749167-41749186 None:intergenic 35.0%
ATACCAGGGTTACATTTACA+TGG + chr3_4:41749368-41749387 Msa0501100:intron 35.0%
TTACCATGTAAATGTAACCC+TGG - chr3_4:41749374-41749393 None:intergenic 35.0%
!!! TGGTTTTGTAAGGATGAGTT+AGG - chr3_4:41749417-41749436 None:intergenic 35.0%
!!! AACTGAGAGTTGGTTTTGTA+AGG - chr3_4:41749427-41749446 None:intergenic 35.0%
ATATGGTATTCTTGCGTTGT+TGG + chr3_4:41749460-41749479 Msa0501100:intron 35.0%
ATACCAGGGTTACATTTACA+TGG + chr3_4:41749368-41749387 Msa0501100:intron 35.0%
TTACCATGTAAATGTAACCC+TGG - chr3_4:41749374-41749393 None:intergenic 35.0%
!!! TGGTTTTGTAAGGATGAGTT+AGG - chr3_4:41749417-41749436 None:intergenic 35.0%
GTAAAAGAGACAGCTTAAGA+GGG - chr3_4:41749736-41749755 None:intergenic 35.0%
AGTAAAAGAGACAGCTTAAG+AGG - chr3_4:41749737-41749756 None:intergenic 35.0%
!! GAAATGAAAAGCACTGGTTT+AGG + chr3_4:41749770-41749789 Msa0501100:intron 35.0%
TAATTAAAACAGTCGCATGC+CGG - chr3_4:41749836-41749855 None:intergenic 35.0%
CAAGTGTGTGTGTTAAGATT+TGG + chr3_4:41749911-41749930 Msa0501100:intron 35.0%
ATGATGGCAGATGGTTTATT+TGG + chr3_4:41750006-41750025 Msa0501100:CDS 35.0%
TGATGGCAGATGGTTTATTT+GGG + chr3_4:41750007-41750026 Msa0501100:CDS 35.0%
TTTATTTGGGAAAAGCGAAC+TGG + chr3_4:41750020-41750039 Msa0501100:CDS 35.0%
AGCTTCAGATAACAGTACAA+GGG - chr3_4:41750121-41750140 None:intergenic 35.0%
TAGCTTCAGATAACAGTACA+AGG - chr3_4:41750122-41750141 None:intergenic 35.0%
TGTACGCAATTTACAACTGT+AGG - chr3_4:41750154-41750173 None:intergenic 35.0%
GTTGCCACAACAAAATCAAA+TGG - chr3_4:41750184-41750203 None:intergenic 35.0%
!! ATTTTGTTGTGGCAACAAGT+GGG + chr3_4:41750188-41750207 Msa0501100:CDS 35.0%
! TGGGATTGATAACACGATAA+AGG + chr3_4:41750207-41750226 Msa0501100:CDS 35.0%
!!! GTGATGGATTTTCCTAGATA+TGG + chr3_4:41750293-41750312 Msa0501100:intron 35.0%
! ACAGCATTGAATCCCTATTA+CGG - chr3_4:41750420-41750439 None:intergenic 35.0%
ATTTGACGGTGAAAATAAGC+AGG + chr3_4:41750538-41750557 Msa0501100:intron 35.0%
GTATCTAGGTGATACATGTA+AGG + chr3_4:41750778-41750797 Msa0501100:intron 35.0%
!!! TCTGTTTTCGGAAGCATTAA+AGG - chr3_4:41750917-41750936 None:intergenic 35.0%
! CTAAATGGCTGATCTGTTTT+CGG - chr3_4:41750929-41750948 None:intergenic 35.0%
TAACCACAGTATGTCCTAAA+TGG - chr3_4:41750944-41750963 None:intergenic 35.0%
!!! TAGCTGATTCTTTTTTCTGC+AGG + chr3_4:41750962-41750981 Msa0501100:intron 35.0%
!! AATGGTTCTAAGAGCTCAAA+GGG - chr3_4:41750988-41751007 None:intergenic 35.0%
!! AAATGGTTCTAAGAGCTCAA+AGG - chr3_4:41750989-41751008 None:intergenic 35.0%
GGAAACTCATGCATTCTAAA+TGG - chr3_4:41751006-41751025 None:intergenic 35.0%
! ATCGGTGAATCTTTAGGTTT+GGG - chr3_4:41751064-41751083 None:intergenic 35.0%
! AATCGGTGAATCTTTAGGTT+TGG - chr3_4:41751065-41751084 None:intergenic 35.0%
GTGAAAATCGGTGAATCTTT+AGG - chr3_4:41751070-41751089 None:intergenic 35.0%
AAAGAAATGAACTTACCAGC+AGG - chr3_4:41751092-41751111 None:intergenic 35.0%
GACCCATTATGGGATATTTA+TGG - chr3_4:41751175-41751194 None:intergenic 35.0%
AGGCAGAGTATATGAAATAC+AGG - chr3_4:41751309-41751328 None:intergenic 35.0%
TCATTTGTGAATAAGCAAGC+AGG - chr3_4:41751381-41751400 None:intergenic 35.0%
! CGAAACAAGATACCTTTTCT+TGG + chr3_4:41751442-41751461 Msa0501100:intron 35.0%
TGGATTGAGATGATTCAGAT+GGG + chr3_4:41751576-41751595 Msa0501100:three_prime_UTR 35.0%
! TTTAAAATGTCTCCCATGCT+TGG - chr3_4:41751605-41751624 None:intergenic 35.0%
ATATCAGCAAACATGGCAAT+CGG - chr3_4:41751756-41751775 None:intergenic 35.0%
ACACAGTATATCAGCAAACA+TGG - chr3_4:41751763-41751782 None:intergenic 35.0%
!! TACTGTGTATAGGTTTTTGG+TGG + chr3_4:41751775-41751794 Msa0501100:three_prime_UTR 35.0%
CAGCTATTGATATGAAGCAG+AGG + chr3_4:41748563-41748582 Msa0501100:CDS 40.0%
! TTTATTGGGCACTGCAATGT+GGG + chr3_4:41748586-41748605 Msa0501100:CDS 40.0%
TGTGGGGACTGATATAAAAC+AGG + chr3_4:41748603-41748622 Msa0501100:CDS 40.0%
ATCATGAGTGAAATCGCGTT+TGG + chr3_4:41748829-41748848 Msa0501100:intron 40.0%
TCATGAGTGAAATCGCGTTT+GGG + chr3_4:41748830-41748849 Msa0501100:intron 40.0%
!!! TTTAGCGGTTTTGTTCAGCT+GGG - chr3_4:41748945-41748964 None:intergenic 40.0%
!!! TTTTAGCGGTTTTGTTCAGC+TGG - chr3_4:41748946-41748965 None:intergenic 40.0%
! AGGGTTTAGTCACGTTTTAG+CGG - chr3_4:41748960-41748979 None:intergenic 40.0%
AGAAACAGAGCAATCACAAC+AGG - chr3_4:41749017-41749036 None:intergenic 40.0%
TTGGAGAGAAGAGAGATGAA+GGG - chr3_4:41749063-41749082 None:intergenic 40.0%
ATTGGAGAGAAGAGAGATGA+AGG - chr3_4:41749064-41749083 None:intergenic 40.0%
TACACTCCCGATCTTAAATC+AGG + chr3_4:41749157-41749176 Msa0501100:intron 40.0%
TTCTTAACTAAGATCGGGAG+GGG - chr3_4:41749217-41749236 None:intergenic 40.0%
GTTCTTAACTAAGATCGGGA+GGG - chr3_4:41749218-41749237 None:intergenic 40.0%
TGTTCTTAACTAAGATCGGG+AGG - chr3_4:41749219-41749238 None:intergenic 40.0%
GTTAGGCCCCAAATTTCAAT+AGG - chr3_4:41749400-41749419 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG - chr3_4:41749600-41749619 None:intergenic 40.0%
CCTTACAAAACCAGCTTGTA+AGG + chr3_4:41749597-41749616 Msa0501100:intron 40.0%
! AGAGTCTTATCTATCCGATG+TGG + chr3_4:41749653-41749672 Msa0501100:intron 40.0%
! GAGTCTTATCTATCCGATGT+GGG + chr3_4:41749654-41749673 Msa0501100:intron 40.0%
GGCAACAGTTTGGTACTATT+GGG - chr3_4:41749692-41749711 None:intergenic 40.0%
CAGAACGAGGAGATTCATTA+TGG - chr3_4:41749864-41749883 None:intergenic 40.0%
GAGATGAACAAATCAGAACG+AGG - chr3_4:41749877-41749896 None:intergenic 40.0%
ATAGGTGAATATGTTGCCAG+CGG + chr3_4:41749978-41749997 Msa0501100:intron 40.0%
AGACTCATGAAATTGCTGAG+TGG + chr3_4:41750044-41750063 Msa0501100:CDS 40.0%
TTCAGATAACAGTACAAGGG+GGG - chr3_4:41750118-41750137 None:intergenic 40.0%
CTTCAGATAACAGTACAAGG+GGG - chr3_4:41750119-41750138 None:intergenic 40.0%
GCTTCAGATAACAGTACAAG+GGG - chr3_4:41750120-41750139 None:intergenic 40.0%
!! GATTTTGTTGTGGCAACAAG+TGG + chr3_4:41750187-41750206 Msa0501100:CDS 40.0%
!! TTTCAATCTCTGAAGCTGTC+TGG + chr3_4:41750271-41750290 Msa0501100:intron 40.0%
! CAGCATTGAATCCCTATTAC+GGG - chr3_4:41750419-41750438 None:intergenic 40.0%
TATTGAGAAGTGATGCAGCT+AGG + chr3_4:41750466-41750485 Msa0501100:intron 40.0%
GAGCTACTGCTGTTAATGTT+AGG + chr3_4:41750626-41750645 Msa0501100:intron 40.0%
TAGGTGATACATGTAAGGGT+TGG + chr3_4:41750783-41750802 Msa0501100:intron 40.0%
CGAAAACAGATCAGCCATTT+AGG + chr3_4:41750927-41750946 Msa0501100:intron 40.0%
AGAATGCATGAGTTTCCTGA+AGG + chr3_4:41751009-41751028 Msa0501100:CDS 40.0%
TAGGTTTGGGCACATTCAAA+AGG - chr3_4:41751051-41751070 None:intergenic 40.0%
ACTTACCAGCAGGTGAAAAT+CGG - chr3_4:41751082-41751101 None:intergenic 40.0%
CTGGATTGAGATGATTCAGA+TGG + chr3_4:41751575-41751594 Msa0501100:three_prime_UTR 40.0%
GGATTGAGATGATTCAGATG+GGG + chr3_4:41751577-41751596 Msa0501100:three_prime_UTR 40.0%
! GTTTATTGGGCACTGCAATG+TGG + chr3_4:41748585-41748604 Msa0501100:CDS 45.0%
! TTATTGGGCACTGCAATGTG+GGG + chr3_4:41748587-41748606 Msa0501100:CDS 45.0%
! CGATTTTGCGATTCTACGAC+TGG + chr3_4:41748766-41748785 Msa0501100:intron 45.0%
TCACTCACGATCCATATTCC+AGG - chr3_4:41748792-41748811 None:intergenic 45.0%
CAGTACAGTCGCAAATTGTG+TGG - chr3_4:41748865-41748884 None:intergenic 45.0%
TTTGCGACTGTACTGCAGTT+TGG + chr3_4:41748870-41748889 Msa0501100:intron 45.0%
TTGCGACTGTACTGCAGTTT+GGG + chr3_4:41748871-41748890 Msa0501100:intron 45.0%
GACAGAGCAATCACAACAGT+CGG - chr3_4:41749041-41749060 None:intergenic 45.0%
CTCCCGATCTTAAATCAGGT+AGG + chr3_4:41749161-41749180 Msa0501100:intron 45.0%
GGGTAGCAAAATCGTAACTG+GGG - chr3_4:41749196-41749215 None:intergenic 45.0%
GGGGTAGCAAAATCGTAACT+GGG - chr3_4:41749197-41749216 None:intergenic 45.0%
TCTTAACTAAGATCGGGAGG+GGG - chr3_4:41749216-41749235 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr3_4:41749602-41749621 Msa0501100:intron 45.0%
TATCTATCCGATGTGGGACT+TGG + chr3_4:41749660-41749679 Msa0501100:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG + chr3_4:41749661-41749680 Msa0501100:intron 45.0%
GAAAAACCCAAGTCCCACAT+CGG - chr3_4:41749670-41749689 None:intergenic 45.0%
GGGCAACAGTTTGGTACTAT+TGG - chr3_4:41749693-41749712 None:intergenic 45.0%
CTACTTCAAGGGCAACAGTT+TGG - chr3_4:41749702-41749721 None:intergenic 45.0%
GGTGATATGTGCATAGACAC+AGG + chr3_4:41749791-41749810 Msa0501100:intron 45.0%
AGCACTTGGAGTCCATATCT+AGG - chr3_4:41750308-41750327 None:intergenic 45.0%
! ACCAGAAACTGGTGATGTGT+TGG + chr3_4:41750363-41750382 Msa0501100:CDS 45.0%
! CCAGAAACTGGTGATGTGTT+GGG + chr3_4:41750364-41750383 Msa0501100:CDS 45.0%
! CAGCCATTTAGGACATACTG+TGG + chr3_4:41750938-41750957 Msa0501100:intron 45.0%
!!! ATTCACCGATTTTCACCTGC+TGG + chr3_4:41751074-41751093 Msa0501100:three_prime_UTR 45.0%
!! TATCCCATAATGGGTCGGTT+TGG + chr3_4:41751179-41751198 Msa0501100:intron 45.0%
!! AAATAATATTCTATATATAT+TGG - chr3_4:41749082-41749101 None:intergenic 5.0%
!! TAATTATTGAATTATTATAA+AGG + chr3_4:41751498-41751517 Msa0501100:intron 5.0%
!! TCTACGACTGGCCTGGAATA+TGG + chr3_4:41748778-41748797 Msa0501100:intron 50.0%
!! TGTACTGCAGTTTGGGTTGC+TGG + chr3_4:41748878-41748897 Msa0501100:intron 50.0%
TGGAATAGCGCCTCACATTC+TGG + chr3_4:41748898-41748917 Msa0501100:intron 50.0%
GGAATAGCGCCTCACATTCT+GGG + chr3_4:41748899-41748918 Msa0501100:intron 50.0%
GGGGGTAGCAAAATCGTAAC+TGG - chr3_4:41749198-41749217 None:intergenic 50.0%
TGCGTTGTTGGAGTTTGCGA+TGG + chr3_4:41749299-41749318 Msa0501100:intron 50.0%
TGCGTTGTTGGAGTTTGCCA+TGG + chr3_4:41749472-41749491 Msa0501100:intron 50.0%
GCAATCCTCACCTTACAAGC+TGG - chr3_4:41749610-41749629 None:intergenic 50.0%
TTGCTGAGTGGCGATGAATC+TGG + chr3_4:41750056-41750075 Msa0501100:CDS 50.0%
!! TCTCTGAAGCTGTCTGGTGA+TGG + chr3_4:41750277-41750296 Msa0501100:intron 50.0%
!! GAAGATGCAACAGGAGCACT+TGG - chr3_4:41750322-41750341 None:intergenic 50.0%
CCAGCTACAGAAGATGCAAC+AGG - chr3_4:41750331-41750350 None:intergenic 50.0%
CCTGTTGCATCTTCTGTAGC+TGG + chr3_4:41750328-41750347 Msa0501100:CDS 50.0%
GTTGCATCTTCTGTAGCTGG+TGG + chr3_4:41750331-41750350 Msa0501100:CDS 50.0%
CCCAACACATCACCAGTTTC+TGG - chr3_4:41750367-41750386 None:intergenic 50.0%
! TGGTGATGTGTTGGGTGCTA+TGG + chr3_4:41750372-41750391 Msa0501100:CDS 50.0%
CCACCAAACCGACCCATTAT+GGG - chr3_4:41751185-41751204 None:intergenic 50.0%
CTGCAGTGGTACAGAAGGAA+AGG - chr3_4:41751528-41751547 None:intergenic 50.0%
CTTTCCTTCTGTACCACTGC+AGG + chr3_4:41751526-41751545 Msa0501100:intron 50.0%
! ACCACTGCAGGTGCTATGTT+CGG + chr3_4:41751538-41751557 Msa0501100:intron 50.0%
TTCGGCGGTACTTGTGAATC+TGG + chr3_4:41751556-41751575 Msa0501100:three_prime_UTR 50.0%
! TTGCGATTCTACGACTGGCC+TGG + chr3_4:41748771-41748790 Msa0501100:intron 55.0%
GTTGCCAGCGGTAGTGATGA+TGG + chr3_4:41749990-41750009 Msa0501100:CDS 55.0%
TCTGCCATCATCACTACCGC+TGG - chr3_4:41749997-41750016 None:intergenic 55.0%
!! GCGGTAGTGATGATGGCAGA+TGG + chr3_4:41749997-41750016 Msa0501100:CDS 55.0%
! TCTGTAGCTGGTGGTTCTGC+AGG + chr3_4:41750340-41750359 Msa0501100:CDS 55.0%
GGTTCTGCAGGACCAGAAAC+TGG + chr3_4:41750352-41750371 Msa0501100:CDS 55.0%
CGCAAGCGTAGTGATCCTTC+AGG - chr3_4:41751027-41751046 None:intergenic 55.0%
!! CCCATAATGGGTCGGTTTGG+TGG + chr3_4:41751182-41751201 Msa0501100:intron 55.0%
GCCACCAAACCGACCCATTA+TGG - chr3_4:41751186-41751205 None:intergenic 55.0%
AGCACCTGCAGTGGTACAGA+AGG - chr3_4:41751533-41751552 None:intergenic 55.0%
! ACTGCAGGTGCTATGTTCGG+CGG + chr3_4:41751541-41751560 Msa0501100:intron 55.0%
TTCAGATGGGGAGCCAAGCA+TGG + chr3_4:41751589-41751608 Msa0501100:three_prime_UTR 55.0%
TCAGATGGGGAGCCAAGCAT+GGG + chr3_4:41751590-41751609 Msa0501100:three_prime_UTR 55.0%
TAGCGCCTCACATTCTGGGC+CGG + chr3_4:41748903-41748922 Msa0501100:intron 60.0%
GCCGAACATAGCACCTGCAG+TGG - chr3_4:41751542-41751561 None:intergenic 60.0%
AGCGCCTCACATTCTGGGCC+GGG + chr3_4:41748904-41748923 Msa0501100:intron 65.0%
CCTCACATTCTGGGCCGGGT+CGG + chr3_4:41748908-41748927 Msa0501100:intron 65.0%
CTCACATTCTGGGCCGGGTC+GGG + chr3_4:41748909-41748928 Msa0501100:intron 65.0%
GGGTTGTGCAGAACCCGACC+CGG - chr3_4:41748925-41748944 None:intergenic 65.0%
CCGACCCGGCCCAGAATGTG+AGG - chr3_4:41748911-41748930 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41748548 41751887 41748548 ID=Msa0501100;Name=Msa0501100
chr3_4 mRNA 41748548 41751887 41748548 ID=Msa0501100-mRNA-1;Parent=Msa0501100;Name=Msa0501100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=2|1|1|1|0.8|0.66|6|364|159
chr3_4 exon 41748548 41748646 41748548 ID=Msa0501100-mRNA-1:exon:8773;Parent=Msa0501100-mRNA-1
chr3_4 exon 41749982 41750077 41749982 ID=Msa0501100-mRNA-1:exon:8774;Parent=Msa0501100-mRNA-1
chr3_4 exon 41750158 41750228 41750158 ID=Msa0501100-mRNA-1:exon:8775;Parent=Msa0501100-mRNA-1
chr3_4 exon 41750310 41750437 41750310 ID=Msa0501100-mRNA-1:exon:8776;Parent=Msa0501100-mRNA-1
chr3_4 exon 41750984 41751095 41750984 ID=Msa0501100-mRNA-1:exon:8777;Parent=Msa0501100-mRNA-1
chr3_4 exon 41751548 41751887 41751548 ID=Msa0501100-mRNA-1:exon:8778;Parent=Msa0501100-mRNA-1
chr3_4 five_prime_UTR 41748548 41748549 41748548 ID=Msa0501100-mRNA-1:five_prime_utr;Parent=Msa0501100-mRNA-1
chr3_4 CDS 41748550 41748646 41748550 ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1
chr3_4 CDS 41749982 41750077 41749982 ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1
chr3_4 CDS 41750158 41750228 41750158 ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1
chr3_4 CDS 41750310 41750437 41750310 ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1
chr3_4 CDS 41750984 41751071 41750984 ID=Msa0501100-mRNA-1:cds;Parent=Msa0501100-mRNA-1
chr3_4 three_prime_UTR 41751072 41751095 41751072 ID=Msa0501100-mRNA-1:three_prime_utr;Parent=Msa0501100-mRNA-1
chr3_4 three_prime_UTR 41751548 41751887 41751548 ID=Msa0501100-mRNA-1:three_prime_utr;Parent=Msa0501100-mRNA-1
Gene Sequence

>Msa0501100

ATGCAGCCCGAAGCAGCTATTGATATGAAGCAGAGGTTTATTGGGCACTGCAATGTGGGGACTGATATAAAACAGGCTAATTTTCTTGGTCAAAAAGGTGAATATGTTGCCAGCGGTAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGAACTGGAAGACTCATGAAATTGCTGAGTGGCGATGAATCTGTTGTAAATTGCGTACAATGTCATCCATTTGATTTTGTTGTGGCAACAAGTGGGATTGATAACACGATAAAGATATGGACTCCAAGTGCTCCTGTTGCATCTTCTGTAGCTGGTGGTTCTGCAGGACCAGAAACTGGTGATGTGTTGGGTGCTATGGAGAACAATCAACAAAAGTTATCCCGTAATAGGGATTCAATGCTGCCCTTTGAGCTCTTAGAACCATTTAGAATGCATGAGTTTCCTGAAGGATCACTACGCTTGCGACCTTTTGAATGTGCCCAAACCTAA

Protein sequence

>Msa0501100

MQPEAAIDMKQRFIGHCNVGTDIKQANFLGQKGEYVASGSDDGRWFIWEKRTGRLMKLLSGDESVVNCVQCHPFDFVVATSGIDNTIKIWTPSAPVASSVAGGSAGPETGDVLGAMENNQQKLSRNRDSMLPFELLEPFRMHEFPEGSLRLRPFECAQT*