AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0477080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477080 MtrunA17_Chr3g0138941 97.486 358 9 0 1 358 1 358 0.0 733
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477080 AT5G10710.1 62.342 316 109 4 45 358 1 308 2.12e-142 406
Msa0477080 AT5G10710.3 57.911 316 109 5 45 358 1 294 8.29e-126 363
Msa0477080 AT5G10710.2 68.398 231 69 3 45 273 1 229 1.61e-112 327

Find 84 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCATCATGTTGAAAAT+TGG 0.207042 3_3:+81176847 None:intergenic
AGACTTATAAAGGAACTTTA+TGG 0.261283 3_3:-81177269 Msa0477080:CDS
ACTTGGCTGACCGTATTTCT+AGG 0.263651 3_3:-81181262 Msa0477080:intron
TATATAGTACCTAGCGAAAT+TGG 0.269534 3_3:-81176180 Msa0477080:three_prime_UTR
CCTAGCGAAATTGGTTATAT+AGG 0.340894 3_3:-81176171 Msa0477080:three_prime_UTR
GCTAGGTACTATATAACTTC+TGG 0.356582 3_3:+81176188 None:intergenic
TCTTGTACCATTTGTACAAC+AGG 0.378391 3_3:-81176066 Msa0477080:three_prime_UTR
CATGCAGGTCAGACTTATAA+AGG 0.380694 3_3:-81177279 Msa0477080:intron
AGACATAACTGAGTAAAGTT+TGG 0.383686 3_3:-81181832 Msa0477080:five_prime_UTR
GGAGCAGATAATTTGCTGTT+TGG 0.394698 3_3:-81178445 Msa0477080:intron
TTTGTAGAGATATATTTAGA+TGG 0.404679 3_3:-81180486 Msa0477080:intron
CAGAAATTCATTGATCATGT+TGG 0.434843 3_3:-81178029 Msa0477080:CDS
TGTTTGGAAGGAGCAAGAAT+TGG 0.441864 3_3:-81178429 Msa0477080:CDS
TCGATACACAGATCTCATTT+CGG 0.451039 3_3:-81176926 Msa0477080:CDS
GAACTTTATGGAAATCAAAT+CGG 0.451964 3_3:-81177257 Msa0477080:CDS
TTGTAGAGATATATTTAGAT+GGG 0.452805 3_3:-81180485 Msa0477080:intron
ATGTATCCCTGTTGTACAAA+TGG 0.455077 3_3:+81176059 None:intergenic
TATTCCTTCAATATCCTCTC+TGG 0.456149 3_3:-81176094 Msa0477080:three_prime_UTR
GCTTAAAAGACATGAAAACT+TGG 0.457621 3_3:-81181279 Msa0477080:CDS
ATGATGGAAGATGGAATCTC+AGG 0.459261 3_3:-81176835 Msa0477080:CDS
GAAATTGGTTATATAGGTTG+AGG 0.462124 3_3:-81176165 Msa0477080:three_prime_UTR
CTTGTTGCGAGAGGGATAAT+CGG 0.462940 3_3:+81181726 None:intergenic
GTGATCTTGTCAGGTGCATA+TGG 0.466433 3_3:-81180287 Msa0477080:intron
GTAGAATTTATCTTCGACAT+TGG 0.467570 3_3:+81176871 None:intergenic
CAGATAATTTGCTGTTTGGA+AGG 0.473656 3_3:-81178441 Msa0477080:CDS
TTCACCTTCTGGTAGACTCA+TGG 0.476510 3_3:+81176762 None:intergenic
CGCGATGCGATTCGTTGAAA+CGG 0.476706 3_3:-81181806 Msa0477080:exon
ATACGTGGATAGACGGGAAC+AGG 0.478284 3_3:-81177991 Msa0477080:intron
CTCGAATCTCAGTGCTAGCC+TGG 0.481978 3_3:-81176894 Msa0477080:CDS
TCTTCTATGTCACTGAGTGT+TGG 0.486474 3_3:+81181860 None:intergenic
GAGAAAGTTACCTAGAAATA+CGG 0.501508 3_3:+81181252 None:intergenic
TAGGATAGTCGAACTGGTGC+AGG 0.504799 3_3:+81176805 None:intergenic
TGGACGGACGTATGCACCCA+TGG 0.509184 3_3:-81181538 Msa0477080:CDS
GGGATAATCGGCAGAGTGAA+AGG 0.509209 3_3:+81181738 None:intergenic
ACAAACTCGATCATGTGATA+AGG 0.514790 3_3:+81177215 None:intergenic
AGAATCTAAGACTGCAGAAA+GGG 0.517798 3_3:+81176262 None:intergenic
TCTGCGTAGGATAGTCGAAC+TGG 0.518507 3_3:+81176799 None:intergenic
GATGGGGAACAGTGGAATGA+TGG 0.520649 3_3:-81180468 Msa0477080:CDS
TGCAAGCATACGTGGATAGA+CGG 0.523288 3_3:-81177998 Msa0477080:CDS
TGACGTATTAACAAGCCATC+AGG 0.529984 3_3:-81180233 Msa0477080:CDS
ATTTATCTTCGACATTGGCC+AGG 0.530939 3_3:+81176876 None:intergenic
GGACGGACGTATGCACCCAT+GGG 0.534852 3_3:-81181537 Msa0477080:CDS
CCGCAGTTTGAACAATATGC+TGG 0.540600 3_3:-81181558 Msa0477080:intron
TAAGTTCATGTATGTAGCTA+CGG 0.547209 3_3:-81181917 Msa0477080:five_prime_UTR
TGGTAGACTCATGGTTCGTA+AGG 0.549313 3_3:+81176771 None:intergenic
GCAAGATGATGATAGTCGCT+TGG 0.551967 3_3:-81181411 Msa0477080:CDS
AAAATGGAACTGTGTGCTCA+AGG 0.553374 3_3:+81178184 None:intergenic
GAGAATCTAAGACTGCAGAA+AGG 0.553556 3_3:+81176261 None:intergenic
TGCAGAAAGGGCGAAGCTCT+AGG 0.556381 3_3:+81176274 None:intergenic
ACTTGCTACAATAAGAGAGC+AGG 0.563333 3_3:-81180442 Msa0477080:intron
GCAAGCATACGTGGATAGAC+GGG 0.564586 3_3:-81177997 Msa0477080:CDS
TCCTTCAATATCCTCTCTGG+TGG 0.566800 3_3:-81176091 Msa0477080:three_prime_UTR
TATATCTGCTGAAGTGCTTG+TGG 0.569777 3_3:+81176308 None:intergenic
GCTAGCACTGAGATTCGAGT+TGG 0.570019 3_3:+81176898 None:intergenic
TCGTAAGGCGTCTTCTGCGT+AGG 0.577738 3_3:+81176786 None:intergenic
AACGAGGGAGCAATATATGT+TGG 0.581685 3_3:+81176116 None:intergenic
TGTAGAGATATATTTAGATG+GGG 0.590530 3_3:-81180484 Msa0477080:intron
CCTATATAACCAATTTCGCT+AGG 0.591483 3_3:+81176171 None:intergenic
TATATTTAGATGGGGAACAG+TGG 0.594269 3_3:-81180476 Msa0477080:CDS
AGGATATTGAAGGAATAACG+AGG 0.594872 3_3:+81176100 None:intergenic
TCTTCTTTCATCCAATGCAA+TGG 0.597510 3_3:-81178133 Msa0477080:intron
GAAGGGACCTTGTTGCGAGA+GGG 0.597833 3_3:+81181718 None:intergenic
ATTACAGGTATATAGAATTG+TGG 0.598252 3_3:+81175993 None:intergenic
CGATTATCCCTCTCGCAACA+AGG 0.599074 3_3:-81181725 Msa0477080:intron
ACCACCAGAGAGGATATTGA+AGG 0.599427 3_3:+81176090 None:intergenic
AGATCTATTGCAAGCATACG+TGG 0.604226 3_3:-81178006 Msa0477080:CDS
AAATGAGATCTGTGTATCGA+AGG 0.604667 3_3:+81176929 None:intergenic
AATTAACAGGGATTCTGACA+AGG 0.606528 3_3:-81181170 Msa0477080:intron
AGAAGGGACCTTGTTGCGAG+AGG 0.608665 3_3:+81181717 None:intergenic
CTTGTACCATTTGTACAACA+GGG 0.614869 3_3:-81176065 Msa0477080:three_prime_UTR
GGATATTGAAGGAATAACGA+GGG 0.617938 3_3:+81176101 None:intergenic
CAGAGTGAAAGGAATTACTT+CGG 0.620744 3_3:+81181749 None:intergenic
TACATATAAAACTGGAAACA+AGG 0.626563 3_3:-81180203 Msa0477080:intron
ACTCGATCATGTGATAAGGA+AGG 0.628301 3_3:+81177219 None:intergenic
CGTTGAAACGGAGAGCGATG+CGG 0.630811 3_3:-81181794 Msa0477080:CDS
GACGGACGTATGCACCCATG+GGG 0.641963 3_3:-81181536 Msa0477080:CDS
CAAGACTCGATGATTAACGA+TGG 0.662411 3_3:+81182010 None:intergenic
GCACGAGCTTCTCAAACACA+AGG 0.674546 3_3:-81181112 Msa0477080:intron
ATCTTGTCAGGTGCATATGG+AGG 0.680322 3_3:-81180284 Msa0477080:intron
AGTTTGAACAATATGCTGGA+CGG 0.688660 3_3:-81181554 Msa0477080:CDS
ACTTACTCTCCAGCACGCAG+TGG 0.705433 3_3:+81178229 None:intergenic
CGAACCATGAGTCTACCAGA+AGG 0.717534 3_3:-81176766 Msa0477080:intron
GGTACAAGACACCACCAGAG+AGG 0.725071 3_3:+81176080 None:intergenic
ACGGACGTATGCACCCATGG+GGG 0.801481 3_3:-81181535 Msa0477080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTTGAAAAATAGAA+AGG + chr3_3:81176981-81177000 None:intergenic 10.0%
!!! AATAGTTTTGATTTTATTAT+AGG - chr3_3:81178378-81178397 Msa0477080:intron 10.0%
!! AATTAAAATGAAAAAGATAA+TGG + chr3_3:81178685-81178704 None:intergenic 10.0%
!! TTAAGGAAATAATAAAATAT+TGG - chr3_3:81179129-81179148 Msa0477080:intron 10.0%
!! ATTATATATTTGTTTGTATC+AGG + chr3_3:81176701-81176720 None:intergenic 15.0%
!!! ATTTCTTCTTTTTAATTAAC+AGG - chr3_3:81176846-81176865 Msa0477080:CDS 15.0%
!!! TTTCTTCTTTTTAATTAACA+GGG - chr3_3:81176847-81176866 Msa0477080:CDS 15.0%
!! AATAAAATTGACATCAAATT+TGG - chr3_3:81177075-81177094 Msa0477080:intron 15.0%
!!! ATATCTTTTCATTTATTTCT+AGG - chr3_3:81179759-81179778 Msa0477080:intron 15.0%
!!! TGATTATGTTTCTTTTATTT+TGG - chr3_3:81180548-81180567 Msa0477080:intron 15.0%
!! TAATAACAACAATAAACCAA+TGG + chr3_3:81176424-81176443 None:intergenic 20.0%
!!! TCTATTATTTTAATCACAGT+TGG - chr3_3:81176721-81176740 Msa0477080:intron 20.0%
!! AACATATTAACAATTAGTGA+AGG + chr3_3:81176802-81176821 None:intergenic 20.0%
!! ATAAAAATAGTGCAACATTA+AGG + chr3_3:81177228-81177247 None:intergenic 20.0%
!! ATATCTCTACAAAAAAAAAG+AGG + chr3_3:81177536-81177555 None:intergenic 20.0%
!! TTTGTAGAGATATATTTAGA+TGG - chr3_3:81177543-81177562 Msa0477080:intron 20.0%
!! TTGTAGAGATATATTTAGAT+GGG - chr3_3:81177544-81177563 Msa0477080:intron 20.0%
!! GAAAAAGTTACATATAAAAC+TGG - chr3_3:81177818-81177837 Msa0477080:intron 20.0%
!! TTATGTACCTATAAAAAACA+CGG - chr3_3:81177943-81177962 Msa0477080:intron 20.0%
!! TATCAAAAAGATATCAAGTT+GGG + chr3_3:81178466-81178485 None:intergenic 20.0%
!! TTATCAAAAAGATATCAAGT+TGG + chr3_3:81178467-81178486 None:intergenic 20.0%
!!! AACTTGATATCTTTTTGATA+AGG - chr3_3:81178466-81178485 Msa0477080:intron 20.0%
!! AATAATAAAATATTGGTGTG+TGG - chr3_3:81179136-81179155 Msa0477080:intron 20.0%
!! GTTTGAATTGAATACAAAAT+AGG - chr3_3:81179372-81179391 Msa0477080:intron 20.0%
!! TCTATTTCACTAAGTAAATA+TGG + chr3_3:81180264-81180283 None:intergenic 20.0%
!! GACAATTGTTTAGAAAAAAT+GGG + chr3_3:81180406-81180425 None:intergenic 20.0%
!! TGACAATTGTTTAGAAAAAA+TGG + chr3_3:81180407-81180426 None:intergenic 20.0%
!! TTGGTATGTAAAATATTAGA+TGG - chr3_3:81180514-81180533 Msa0477080:intron 20.0%
!! TAACATAGAATAGAATGTTT+AGG + chr3_3:81180610-81180629 None:intergenic 20.0%
!! AACATTCTATTCTATGTTAA+AGG - chr3_3:81180611-81180630 Msa0477080:intron 20.0%
!!! ATAATTAATATTGGCTATGA+GGG - chr3_3:81181460-81181479 Msa0477080:intron 20.0%
!!! ATAAAAAAAGAACTTGCTAA+AGG + chr3_3:81181556-81181575 None:intergenic 20.0%
!! TTTTTGATGCAATTCGATTT+AGG + chr3_3:81176376-81176395 None:intergenic 25.0%
! AGTGAAATTGATACGAATTA+GGG + chr3_3:81176400-81176419 None:intergenic 25.0%
! TAGTGAAATTGATACGAATT+AGG + chr3_3:81176401-81176420 None:intergenic 25.0%
! TGAGATTATAGACTTACATT+TGG + chr3_3:81176656-81176675 None:intergenic 25.0%
! ATTTGTTTGTATCAGGAAAA+TGG + chr3_3:81176694-81176713 None:intergenic 25.0%
! AAAAATAGAAAGGATAAGAG+AGG + chr3_3:81176971-81176990 None:intergenic 25.0%
!!! ATGTTGCACTATTTTTATAC+CGG - chr3_3:81177230-81177249 Msa0477080:CDS 25.0%
!!! TAACAGCAATATTTTTTGCA+TGG - chr3_3:81177327-81177346 Msa0477080:intron 25.0%
! GATTCTTAAGATGTAAATCT+TGG - chr3_3:81177413-81177432 Msa0477080:intron 25.0%
! TGTAGAGATATATTTAGATG+GGG - chr3_3:81177545-81177564 Msa0477080:intron 25.0%
! ATACCAGAACATAAGTAAAA+AGG + chr3_3:81177636-81177655 None:intergenic 25.0%
!!! TATATGTAACTTTTTCCTGA+TGG + chr3_3:81177814-81177833 None:intergenic 25.0%
! TACATATAAAACTGGAAACA+AGG - chr3_3:81177826-81177845 Msa0477080:intron 25.0%
! TTACCATGAAAAGTTATTCA+GGG + chr3_3:81177874-81177893 None:intergenic 25.0%
! TTTACCATGAAAAGTTATTC+AGG + chr3_3:81177875-81177894 None:intergenic 25.0%
! TATGTACCTATAAAAAACAC+GGG - chr3_3:81177944-81177963 Msa0477080:intron 25.0%
!! TGGTTTTTGATAGAAAACTA+TGG + chr3_3:81178314-81178333 None:intergenic 25.0%
!!! CATCTTTTAAAATACAACAG+TGG - chr3_3:81178422-81178441 Msa0477080:CDS 25.0%
!! AAATGAAAAAGATAATGGCT+CGG + chr3_3:81178680-81178699 None:intergenic 25.0%
!!! GCAGTGTTTTTTTTTTTCTT+CGG - chr3_3:81179018-81179037 Msa0477080:intron 25.0%
!!! GGAAACCAATGATTTTTTTT+GGG + chr3_3:81179478-81179497 None:intergenic 25.0%
! AGTTATATATGATGTTGTCA+TGG - chr3_3:81179926-81179945 Msa0477080:intron 25.0%
! GAAAAATGTTCAAATACACA+TGG + chr3_3:81179953-81179972 None:intergenic 25.0%
!! TGTTGAATATGTTCATTTTG+CGG - chr3_3:81180092-81180111 Msa0477080:intron 25.0%
! TCTGAGAATTTAAACTAACA+AGG + chr3_3:81180334-81180353 None:intergenic 25.0%
! AATTGTCAAAACATGTATTC+TGG - chr3_3:81180419-81180438 Msa0477080:intron 25.0%
! ATTGTCAAAACATGTATTCT+GGG - chr3_3:81180420-81180439 Msa0477080:intron 25.0%
! AGTTTAATATCTTCCACAAT+TGG + chr3_3:81180478-81180497 None:intergenic 25.0%
! ATTGTGGAAGATATTAAACT+TGG - chr3_3:81180478-81180497 Msa0477080:CDS 25.0%
! TTCTATTCTATGTTAAAGGT+TGG - chr3_3:81180615-81180634 Msa0477080:intron 25.0%
! TCTATTCTATGTTAAAGGTT+GGG - chr3_3:81180616-81180635 Msa0477080:intron 25.0%
! AGACTTATAAAGGAACTTTA+TGG - chr3_3:81180760-81180779 Msa0477080:intron 25.0%
! GAACTTTATGGAAATCAAAT+CGG - chr3_3:81180772-81180791 Msa0477080:intron 25.0%
!!! TTGTATTAGATGATTTTGAC+TGG - chr3_3:81180833-81180852 Msa0477080:intron 25.0%
! ATTACAAGGTTTGAAAACAA+GGG + chr3_3:81181030-81181049 None:intergenic 25.0%
! TATTACAAGGTTTGAAAACA+AGG + chr3_3:81181031-81181050 None:intergenic 25.0%
! ACTTCTTGATCAATATTACA+AGG + chr3_3:81181044-81181063 None:intergenic 25.0%
! AGGTGAAAACTATATTACTT+CGG - chr3_3:81181283-81181302 Msa0477080:CDS 25.0%
! ACTTAAATGAAATTAGACTC+TGG - chr3_3:81181392-81181411 Msa0477080:intron 25.0%
! AGTGTCCTCATAATTAATAT+TGG - chr3_3:81181451-81181470 Msa0477080:intron 25.0%
! CATAGCCAATATTAATTATG+AGG + chr3_3:81181459-81181478 None:intergenic 25.0%
!! CATAATTAATATTGGCTATG+AGG - chr3_3:81181459-81181478 Msa0477080:intron 25.0%
TAAGTTCATGTATGTAGCTA+CGG - chr3_3:81176112-81176131 Msa0477080:three_prime_UTR 30.0%
AGACATAACTGAGTAAAGTT+TGG - chr3_3:81176197-81176216 Msa0477080:three_prime_UTR 30.0%
GCTTAAAAGACATGAAAACT+TGG - chr3_3:81176750-81176769 Msa0477080:intron 30.0%
GAGAAAGTTACCTAGAAATA+CGG + chr3_3:81176780-81176799 None:intergenic 30.0%
GATATAAATGAGTAGGTAAC+AGG + chr3_3:81176949-81176968 None:intergenic 30.0%
AAGAGAGGATATAAATGAGT+AGG + chr3_3:81176956-81176975 None:intergenic 30.0%
GAAACTGATATCACTTTGTA+TGG + chr3_3:81177048-81177067 None:intergenic 30.0%
ATTGACATCAAATTTGGACT+TGG - chr3_3:81177081-81177100 Msa0477080:intron 30.0%
!! AGTTGTTTTCTATGCTTTAC+AGG + chr3_3:81177122-81177141 None:intergenic 30.0%
!! TCTAAAACATTTTAACAGCG+TGG - chr3_3:81177391-81177410 Msa0477080:intron 30.0%
AATGAATGAACAGTAGAAGT+TGG + chr3_3:81177481-81177500 None:intergenic 30.0%
!!! CATTTTTCAGGATATCTCTA+AGG + chr3_3:81177505-81177524 None:intergenic 30.0%
! CTTCCTTTTTACTTATGTTC+TGG - chr3_3:81177630-81177649 Msa0477080:intron 30.0%
GATTACTATGAAGAACATCA+AGG + chr3_3:81177663-81177682 None:intergenic 30.0%
GCTTGCATATTTAAGTCATT+TGG - chr3_3:81177903-81177922 Msa0477080:intron 30.0%
!!! ATCTTACCCGTGTTTTTTAT+AGG + chr3_3:81177953-81177972 None:intergenic 30.0%
ATTGAGAATGTGAAAAGAGT+AGG - chr3_3:81178078-81178097 Msa0477080:intron 30.0%
TCGCTCTACTATAAAGTTTA+GGG + chr3_3:81178126-81178145 None:intergenic 30.0%
TTCGCTCTACTATAAAGTTT+AGG + chr3_3:81178127-81178146 None:intergenic 30.0%
!!! ACAAGGTAAAGTTTTGAGTA+TGG - chr3_3:81178198-81178217 Msa0477080:CDS 30.0%
!!! CAAGGTAAAGTTTTGAGTAT+GGG - chr3_3:81178199-81178218 Msa0477080:CDS 30.0%
!!! AAGGTAAAGTTTTGAGTATG+GGG - chr3_3:81178200-81178219 Msa0477080:CDS 30.0%
! TTTTCTATCAAAAACCAACG+AGG - chr3_3:81178317-81178336 Msa0477080:intron 30.0%
! GTCTAAAATATTTGTACCCT+CGG + chr3_3:81178352-81178371 None:intergenic 30.0%
GAGAGTTGAGAATACATAAA+TGG - chr3_3:81178769-81178788 Msa0477080:intron 30.0%
CATAAATGGTAAGTGAGATA+TGG - chr3_3:81178783-81178802 Msa0477080:intron 30.0%
ACATACAAATTCCACTAAGT+AGG - chr3_3:81178821-81178840 Msa0477080:intron 30.0%
ACATACAAATCATAGCTTGA+AGG - chr3_3:81178891-81178910 Msa0477080:intron 30.0%
TACTTACAATATGAGACTTG+AGG + chr3_3:81178937-81178956 None:intergenic 30.0%
CTTGGATCGTCAAATTTATT+TGG + chr3_3:81179104-81179123 None:intergenic 30.0%
ATTATTTCCTTAACACTGCT+TGG + chr3_3:81179122-81179141 None:intergenic 30.0%
TAGATTTAATAGGCATCCTA+TGG - chr3_3:81179203-81179222 Msa0477080:intron 30.0%
! TGATTTTTACCTCTAGCTAT+TGG + chr3_3:81179304-81179323 None:intergenic 30.0%
!! GAATACAAAATAGGTACTGA+TGG - chr3_3:81179381-81179400 Msa0477080:intron 30.0%
!!! ACCAATGATTTTTTTTGGGA+GGG + chr3_3:81179474-81179493 None:intergenic 30.0%
!!! AACCAATGATTTTTTTTGGG+AGG + chr3_3:81179475-81179494 None:intergenic 30.0%
!!! CGGAAACCAATGATTTTTTT+TGG + chr3_3:81179479-81179498 None:intergenic 30.0%
TAGTTTATGAGCTGACATTA+TGG - chr3_3:81179685-81179704 Msa0477080:intron 30.0%
AGATATAATCGTCAGCAAAT+GGG + chr3_3:81179745-81179764 None:intergenic 30.0%
AAGATATAATCGTCAGCAAA+TGG + chr3_3:81179746-81179765 None:intergenic 30.0%
! TCATTTTCTGTTTCACGTAT+TGG + chr3_3:81179876-81179895 None:intergenic 30.0%
!! AACTGATTTTACCATTGCAT+TGG + chr3_3:81179910-81179929 None:intergenic 30.0%
CAGAAATTCATTGATCATGT+TGG - chr3_3:81180000-81180019 Msa0477080:intron 30.0%
! TCTCTAAAGATTACATGCAT+AGG + chr3_3:81180071-81180090 None:intergenic 30.0%
! TTTTGCGGAATACTGATATT+AGG - chr3_3:81180107-81180126 Msa0477080:intron 30.0%
CATGTTAAAGCTAGTATCTT+TGG - chr3_3:81180222-81180241 Msa0477080:CDS 30.0%
AACACTATCTACTGATAAGT+CGG - chr3_3:81180353-81180372 Msa0477080:intron 30.0%
!! AGAATGTTTAGGCTTTGTTT+GGG + chr3_3:81180599-81180618 None:intergenic 30.0%
!! TAGAATGTTTAGGCTTTGTT+TGG + chr3_3:81180600-81180619 None:intergenic 30.0%
CTATTCTATGTTAAAGGTTG+GGG - chr3_3:81180617-81180636 Msa0477080:intron 30.0%
TACAAGCATACATGAAAAGA+GGG + chr3_3:81180666-81180685 None:intergenic 30.0%
TTACAAGCATACATGAAAAG+AGG + chr3_3:81180667-81180686 None:intergenic 30.0%
TTGAAAACAAGGGAAAATGT+AGG + chr3_3:81181020-81181039 None:intergenic 30.0%
GTAGAATTTATCTTCGACAT+TGG + chr3_3:81181161-81181180 None:intergenic 30.0%
! TACTCCAATTTTCAACATGA+TGG - chr3_3:81181178-81181197 Msa0477080:intron 30.0%
TCTTCCATCATGTTGAAAAT+TGG + chr3_3:81181185-81181204 None:intergenic 30.0%
!! ATTTTCAACATGATGGAAGA+TGG - chr3_3:81181185-81181204 Msa0477080:intron 30.0%
! GTAATATAGTTTTCACCTTC+TGG + chr3_3:81181281-81181300 None:intergenic 30.0%
!!! AGAGAACGATGTCTTATTTT+CGG - chr3_3:81181316-81181335 Msa0477080:intron 30.0%
AAGTCTGATATGTGTCTTTA+TGG - chr3_3:81181615-81181634 Msa0477080:intron 30.0%
TATATAGTACCTAGCGAAAT+TGG - chr3_3:81181849-81181868 Msa0477080:five_prime_UTR 30.0%
GAAATTGGTTATATAGGTTG+AGG - chr3_3:81181864-81181883 Msa0477080:five_prime_UTR 30.0%
CAGAGTGAAAGGAATTACTT+CGG + chr3_3:81176283-81176302 None:intergenic 35.0%
AAGAGAAGAGAAGAGAAGAA+GGG + chr3_3:81176331-81176350 None:intergenic 35.0%
CGTATCAATTTCACTACCAT+TGG - chr3_3:81176405-81176424 Msa0477080:intron 35.0%
AGTTTGAACAATATGCTGGA+CGG - chr3_3:81176475-81176494 Msa0477080:intron 35.0%
AATTAACAGGGATTCTGACA+AGG - chr3_3:81176859-81176878 Msa0477080:CDS 35.0%
TATACCGGCAATAATTGAAC+TGG - chr3_3:81177245-81177264 Msa0477080:CDS 35.0%
!!! GAGGTTTAGAAGCATTTTTC+AGG + chr3_3:81177517-81177536 None:intergenic 35.0%
TATATTTAGATGGGGAACAG+TGG - chr3_3:81177553-81177572 Msa0477080:intron 35.0%
TGACAAGATCACAGTTGAAT+GGG + chr3_3:81177734-81177753 None:intergenic 35.0%
! CATCCCTGAATAACTTTTCA+TGG - chr3_3:81177868-81177887 Msa0477080:intron 35.0%
ACGCTAAAGAACTAAACACA+TGG - chr3_3:81177976-81177995 Msa0477080:intron 35.0%
ATGTGAAAAGAGTAGGAGAT+AGG - chr3_3:81178085-81178104 Msa0477080:intron 35.0%
AAGAGTAGGAGATAGGATAT+TGG - chr3_3:81178092-81178111 Msa0477080:intron 35.0%
AGAGTAGGAGATAGGATATT+GGG - chr3_3:81178093-81178112 Msa0477080:intron 35.0%
CGCTCTACTATAAAGTTTAG+GGG + chr3_3:81178125-81178144 None:intergenic 35.0%
TGTGATGTTACCAATGCATA+TGG - chr3_3:81178152-81178171 Msa0477080:CDS 35.0%
!!! AGGTAAAGTTTTGAGTATGG+GGG - chr3_3:81178201-81178220 Msa0477080:CDS 35.0%
TAGGTAACACTAAAAACGAG+AGG - chr3_3:81178397-81178416 Msa0477080:intron 35.0%
!! AAGATATCAAGTTGGGACTT+GGG + chr3_3:81178459-81178478 None:intergenic 35.0%
!! AAAGATATCAAGTTGGGACT+TGG + chr3_3:81178460-81178479 None:intergenic 35.0%
AATAGTCAAGTCAGAAATCC+TGG - chr3_3:81178597-81178616 Msa0477080:intron 35.0%
ATAGTCAAGTCAGAAATCCT+GGG - chr3_3:81178598-81178617 Msa0477080:intron 35.0%
AAATCCTGGGATAAGATGAT+GGG - chr3_3:81178611-81178630 Msa0477080:intron 35.0%
TTTGTGCACACTAGAGTTAT+GGG + chr3_3:81178648-81178667 None:intergenic 35.0%
! TTTTGTGCACACTAGAGTTA+TGG + chr3_3:81178649-81178668 None:intergenic 35.0%
ATAACTCTAGTGTGCACAAA+AGG - chr3_3:81178648-81178667 Msa0477080:intron 35.0%
TACCTAAATAACATGCACCA+AGG + chr3_3:81178749-81178768 None:intergenic 35.0%
CATAGCTTGAAGGTTGAAAT+TGG - chr3_3:81178901-81178920 Msa0477080:intron 35.0%
!! CTTGTTGTCACTTTGTATGA+TGG + chr3_3:81178968-81178987 None:intergenic 35.0%
ACAAAGTGACAACAAGATAG+AGG - chr3_3:81178972-81178991 Msa0477080:intron 35.0%
CAAAGTGACAACAAGATAGA+GGG - chr3_3:81178973-81178992 Msa0477080:intron 35.0%
TAGAGGGAGATGTAAATTAC+AGG - chr3_3:81178989-81179008 Msa0477080:intron 35.0%
! TGTTGATTGGTATAACCACT+CGG - chr3_3:81179078-81179097 Msa0477080:intron 35.0%
GGACACATGGTAGATTTAAT+AGG - chr3_3:81179193-81179212 Msa0477080:intron 35.0%
!! GTTAACAAAATGGTGGATAC+TGG - chr3_3:81179273-81179292 Msa0477080:intron 35.0%
! CTAAATCTCACTTGATGGTT+TGG + chr3_3:81179341-81179360 None:intergenic 35.0%
AACCATCAAGTGAGATTTAG+AGG - chr3_3:81179341-81179360 Msa0477080:intron 35.0%
TACCTCTAAATCTCACTTGA+TGG + chr3_3:81179346-81179365 None:intergenic 35.0%
TGAACCCACTTAATGGAATA+AGG - chr3_3:81179424-81179443 Msa0477080:intron 35.0%
!! CAAGCCTTATTCCATTAAGT+GGG + chr3_3:81179431-81179450 None:intergenic 35.0%
!!! CCAATGATTTTTTTTGGGAG+GGG + chr3_3:81179473-81179492 None:intergenic 35.0%
! AGTATAGCATTGAACGTGTA+CGG + chr3_3:81179499-81179518 None:intergenic 35.0%
TACACGTTCAATGCTATACT+TGG - chr3_3:81179499-81179518 Msa0477080:intron 35.0%
!! CAGATAATTTGCTGTTTGGA+AGG - chr3_3:81179588-81179607 Msa0477080:intron 35.0%
! GACATCTTTTGCTGGTAATT+TGG - chr3_3:81179635-81179654 Msa0477080:intron 35.0%
TTTATGAGCTGACATTATGG+AGG - chr3_3:81179688-81179707 Msa0477080:intron 35.0%
! TCACGTATTGGCAAGAAAAA+TGG + chr3_3:81179864-81179883 None:intergenic 35.0%
TCTTCTTTCATCCAATGCAA+TGG - chr3_3:81179896-81179915 Msa0477080:intron 35.0%
TTTCTAAGCCTTGCTTCTAT+TGG - chr3_3:81179969-81179988 Msa0477080:intron 35.0%
AATGCAAACCAATAGAAGCA+AGG + chr3_3:81179980-81179999 None:intergenic 35.0%
TTAGGTCATCATGATCCTTA+TGG - chr3_3:81180125-81180144 Msa0477080:intron 35.0%
ATGCAACATACATGTCCATA+AGG + chr3_3:81180143-81180162 None:intergenic 35.0%
ATGGACATGTATGTTGCATA+CGG - chr3_3:81180144-81180163 Msa0477080:intron 35.0%
CACTAAGTAAATATGGCTAC+AGG + chr3_3:81180257-81180276 None:intergenic 35.0%
ACTAACAAGGATATGAGTTG+TGG + chr3_3:81180321-81180340 None:intergenic 35.0%
! CCACAATTGGTGTTCTTAAA+TGG + chr3_3:81180465-81180484 None:intergenic 35.0%
CCATTTAAGAACACCAATTG+TGG - chr3_3:81180462-81180481 Msa0477080:CDS 35.0%
!! ACTTGGTGTCTTAGTTATCT+TGG - chr3_3:81180495-81180514 Msa0477080:intron 35.0%
ACAAACTCGATCATGTGATA+AGG + chr3_3:81180817-81180836 None:intergenic 35.0%
!!! AGATGATTTTGACTGGTTAG+TGG - chr3_3:81180840-81180859 Msa0477080:intron 35.0%
!!! GATGATTTTGACTGGTTAGT+GGG - chr3_3:81180841-81180860 Msa0477080:intron 35.0%
AGGGGGAAGAAAATTTGAAA+AGG + chr3_3:81180909-81180928 None:intergenic 35.0%
TCCCGTGTTAACATTTGAAA+GGG + chr3_3:81180928-81180947 None:intergenic 35.0%
TTCCCGTGTTAACATTTGAA+AGG + chr3_3:81180929-81180948 None:intergenic 35.0%
ATGTTAACACGGGAAATCAT+TGG - chr3_3:81180934-81180953 Msa0477080:intron 35.0%
AAATGAGATCTGTGTATCGA+AGG + chr3_3:81181103-81181122 None:intergenic 35.0%
TCGATACACAGATCTCATTT+CGG - chr3_3:81181103-81181122 Msa0477080:intron 35.0%
! AGCATTTGCTGAAAAGTGAA+AGG + chr3_3:81181427-81181446 None:intergenic 35.0%
TATCAGACTTAAGTGTGCAT+GGG + chr3_3:81181605-81181624 None:intergenic 35.0%
ATATCAGACTTAAGTGTGCA+TGG + chr3_3:81181606-81181625 None:intergenic 35.0%
! AGAGCGAGATAACTTTGAAA+TGG + chr3_3:81181643-81181662 None:intergenic 35.0%
! AGAATCTAAGACTGCAGAAA+GGG + chr3_3:81181770-81181789 None:intergenic 35.0%
GCTAGGTACTATATAACTTC+TGG + chr3_3:81181844-81181863 None:intergenic 35.0%
CCTATATAACCAATTTCGCT+AGG + chr3_3:81181861-81181880 None:intergenic 35.0%
CCTAGCGAAATTGGTTATAT+AGG - chr3_3:81181858-81181877 Msa0477080:five_prime_UTR 35.0%
GGATATTGAAGGAATAACGA+GGG + chr3_3:81181931-81181950 None:intergenic 35.0%
AGGATATTGAAGGAATAACG+AGG + chr3_3:81181932-81181951 None:intergenic 35.0%
TATTCCTTCAATATCCTCTC+TGG - chr3_3:81181935-81181954 Msa0477080:five_prime_UTR 35.0%
TCTTGTACCATTTGTACAAC+AGG - chr3_3:81181963-81181982 Msa0477080:five_prime_UTR 35.0%
CTTGTACCATTTGTACAACA+GGG - chr3_3:81181964-81181983 Msa0477080:five_prime_UTR 35.0%
ATGTATCCCTGTTGTACAAA+TGG + chr3_3:81181973-81181992 None:intergenic 35.0%
CAAGACTCGATGATTAACGA+TGG + chr3_3:81176022-81176041 None:intergenic 40.0%
TCTTCTATGTCACTGAGTGT+TGG + chr3_3:81176172-81176191 None:intergenic 40.0%
GAAGAGAAGAGAAGAGAAGA+AGG + chr3_3:81176332-81176351 None:intergenic 40.0%
CCAGCATATTGTTCAAACTG+CGG + chr3_3:81176474-81176493 None:intergenic 40.0%
! CTTCAGTGCCTTGTGTTATT+TGG - chr3_3:81177155-81177174 Msa0477080:intron 40.0%
AGGCTACACCAAATAACACA+AGG + chr3_3:81177166-81177185 None:intergenic 40.0%
!! TTGTGTTATTTGGTGTAGCC+TGG - chr3_3:81177165-81177184 Msa0477080:intron 40.0%
AACCAATAGATGACTAAGCC+AGG + chr3_3:81177186-81177205 None:intergenic 40.0%
! ACTTGCTACAATAAGAGAGC+AGG - chr3_3:81177587-81177606 Msa0477080:intron 40.0%
CTACAATAAGAGAGCAGGTA+TGG - chr3_3:81177592-81177611 Msa0477080:intron 40.0%
CTGACAAGATCACAGTTGAA+TGG + chr3_3:81177735-81177754 None:intergenic 40.0%
CATTCAACTGTGATCTTGTC+AGG - chr3_3:81177733-81177752 Msa0477080:intron 40.0%
TGACGTATTAACAAGCCATC+AGG - chr3_3:81177796-81177815 Msa0477080:intron 40.0%
ACCAATGCATATGGACAAGT+AGG - chr3_3:81178161-81178180 Msa0477080:CDS 40.0%
CCAATGCATATGGACAAGTA+GGG - chr3_3:81178162-81178181 Msa0477080:CDS 40.0%
AGGGAATGAAGAGCAATACA+AGG - chr3_3:81178181-81178200 Msa0477080:CDS 40.0%
!!! GGTAAAGTTTTGAGTATGGG+GGG - chr3_3:81178202-81178221 Msa0477080:CDS 40.0%
AACGAGGATATAAACACCGA+GGG - chr3_3:81178333-81178352 Msa0477080:intron 40.0%
GAAATCCTGGGATAAGATGA+TGG - chr3_3:81178610-81178629 Msa0477080:intron 40.0%
AAAACCCATCATCTTATCCC+AGG + chr3_3:81178618-81178637 None:intergenic 40.0%
TTGTGCACACTAGAGTTATG+GGG + chr3_3:81178647-81178666 None:intergenic 40.0%
! TGCCTTGGTGCATGTTATTT+AGG - chr3_3:81178744-81178763 Msa0477080:intron 40.0%
TCTCTTACAGTCCTACTTAG+TGG + chr3_3:81178835-81178854 None:intergenic 40.0%
GGACTGTAAGAGACAACAAT+TGG - chr3_3:81178842-81178861 Msa0477080:intron 40.0%
GTCAAATTTATTTGGCCGAG+TGG + chr3_3:81179096-81179115 None:intergenic 40.0%
CTATGGTAGCAGACATTGAT+GGG - chr3_3:81179220-81179239 Msa0477080:intron 40.0%
! ACCATTTTGTTAACCCTCCT+TGG + chr3_3:81179267-81179286 None:intergenic 40.0%
AAGGAGGGTTAACAAAATGG+TGG - chr3_3:81179266-81179285 Msa0477080:intron 40.0%
!! ACAAAATGGTGGATACTGGA+TGG - chr3_3:81179277-81179296 Msa0477080:intron 40.0%
ATATCGCTGAACCCACTTAA+TGG - chr3_3:81179417-81179436 Msa0477080:intron 40.0%
!! CCAAGCCTTATTCCATTAAG+TGG + chr3_3:81179432-81179451 None:intergenic 40.0%
CCACTTAATGGAATAAGGCT+TGG - chr3_3:81179429-81179448 Msa0477080:intron 40.0%
CCCCTCCCAAAAAAAATCAT+TGG - chr3_3:81179470-81179489 Msa0477080:intron 40.0%
!! GGAGCAGATAATTTGCTGTT+TGG - chr3_3:81179584-81179603 Msa0477080:intron 40.0%
TGTTTGGAAGGAGCAAGAAT+TGG - chr3_3:81179600-81179619 Msa0477080:intron 40.0%
! CAGTATGAGACATCTTTTGC+TGG - chr3_3:81179627-81179646 Msa0477080:intron 40.0%
AATCGTCAGCAAATGGGAAA+CGG + chr3_3:81179739-81179758 None:intergenic 40.0%
AAAATGGAACTGTGTGCTCA+AGG + chr3_3:81179848-81179867 None:intergenic 40.0%
AGATCTATTGCAAGCATACG+TGG - chr3_3:81180023-81180042 Msa0477080:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+AGG + chr3_3:81180592-81180611 None:intergenic 40.0%
CATGCAGGTCAGACTTATAA+AGG - chr3_3:81180750-81180769 Msa0477080:intron 40.0%
ACTCGATCATGTGATAAGGA+AGG + chr3_3:81180813-81180832 None:intergenic 40.0%
CCGTGTTAACATTTGAAAGG+GGG + chr3_3:81180926-81180945 None:intergenic 40.0%
CCCCCTTTCAAATGTTAACA+CGG - chr3_3:81180923-81180942 Msa0477080:intron 40.0%
CCCGTGTTAACATTTGAAAG+GGG + chr3_3:81180927-81180946 None:intergenic 40.0%
CCCCTTTCAAATGTTAACAC+GGG - chr3_3:81180924-81180943 Msa0477080:intron 40.0%
ATTTATCTTCGACATTGGCC+AGG + chr3_3:81181156-81181175 None:intergenic 40.0%
! ATGATGGAAGATGGAATCTC+AGG - chr3_3:81181194-81181213 Msa0477080:intron 40.0%
ACACAATCTCTGCATATGCT+GGG + chr3_3:81181693-81181712 None:intergenic 40.0%
AACACAATCTCTGCATATGC+TGG + chr3_3:81181694-81181713 None:intergenic 40.0%
! TATATCTGCTGAAGTGCTTG+TGG + chr3_3:81181724-81181743 None:intergenic 40.0%
! GAGAATCTAAGACTGCAGAA+AGG + chr3_3:81181771-81181790 None:intergenic 40.0%
AACGAGGGAGCAATATATGT+TGG + chr3_3:81181916-81181935 None:intergenic 40.0%
CTTGTTGCGAGAGGGATAAT+CGG + chr3_3:81176306-81176325 None:intergenic 45.0%
CCGCAGTTTGAACAATATGC+TGG - chr3_3:81176471-81176490 Msa0477080:intron 45.0%
GCAAGATGATGATAGTCGCT+TGG - chr3_3:81176618-81176637 Msa0477080:intron 45.0%
ACTTGGCTGACCGTATTTCT+AGG - chr3_3:81176767-81176786 Msa0477080:CDS 45.0%
AGCCTGGCTTAGTCATCTAT+TGG - chr3_3:81177181-81177200 Msa0477080:intron 45.0%
GGGTCCAGTTCAATTATTGC+CGG + chr3_3:81177252-81177271 None:intergenic 45.0%
GTGATCTTGTCAGGTGCATA+TGG - chr3_3:81177742-81177761 Msa0477080:intron 45.0%
ATCTTGTCAGGTGCATATGG+AGG - chr3_3:81177745-81177764 Msa0477080:intron 45.0%
CCCTACTTGTCCATATGCAT+TGG + chr3_3:81178165-81178184 None:intergenic 45.0%
! GGCTTGGTTGTTGTTGTTGT+TGG + chr3_3:81178250-81178269 None:intergenic 45.0%
!! CTCGGTGTTTATATCCTCGT+TGG + chr3_3:81178334-81178353 None:intergenic 45.0%
CAACGAGGATATAAACACCG+AGG - chr3_3:81178332-81178351 Msa0477080:intron 45.0%
TCCATAACCAGTACGTTGCT+GGG + chr3_3:81178549-81178568 None:intergenic 45.0%
GAATTGATGAGACACTGCCT+TGG - chr3_3:81178729-81178748 Msa0477080:intron 45.0%
GAATCGAACAACCATCAGCT+TGG - chr3_3:81179055-81179074 Msa0477080:intron 45.0%
!! ACCATCAGCTTGGTGTTGAT+TGG - chr3_3:81179065-81179084 Msa0477080:intron 45.0%
ACCAATCAACACCAAGCTGA+TGG + chr3_3:81179069-81179088 None:intergenic 45.0%
TGACGATCCAAGCAGTGTTA+AGG - chr3_3:81179112-81179131 Msa0477080:intron 45.0%
CCATCAATGTCTGCTACCAT+AGG + chr3_3:81179222-81179241 None:intergenic 45.0%
CCTATGGTAGCAGACATTGA+TGG - chr3_3:81179219-81179238 Msa0477080:intron 45.0%
GCCAAGGAGGGTTAACAAAA+TGG - chr3_3:81179263-81179282 Msa0477080:intron 45.0%
! ATGGAATAAGGCTTGGTTGC+AGG - chr3_3:81179436-81179455 Msa0477080:intron 45.0%
! TGGAATAAGGCTTGGTTGCA+GGG - chr3_3:81179437-81179456 Msa0477080:intron 45.0%
AGGCTGGATCTTTCTCTAGA+TGG - chr3_3:81179708-81179727 Msa0477080:intron 45.0%
TGCAAGCATACGTGGATAGA+CGG - chr3_3:81180031-81180050 Msa0477080:intron 45.0%
TCTATGTTAAAGGTTGGGGC+AGG - chr3_3:81180621-81180640 Msa0477080:intron 45.0%
ACCTGCATGACATTTGTAGG+AGG + chr3_3:81180739-81180758 None:intergenic 45.0%
CTGACCTGCATGACATTTGT+AGG + chr3_3:81180742-81180761 None:intergenic 45.0%
TGGTAGACTCATGGTTCGTA+AGG + chr3_3:81181261-81181280 None:intergenic 45.0%
TTCACCTTCTGGTAGACTCA+TGG + chr3_3:81181270-81181289 None:intergenic 45.0%
ATGTGATCGTGTGTGCAACT+AGG - chr3_3:81181356-81181375 Msa0477080:intron 45.0%
TCCTTCAATATCCTCTCTGG+TGG - chr3_3:81181938-81181957 Msa0477080:five_prime_UTR 45.0%
ACCACCAGAGAGGATATTGA+AGG + chr3_3:81181942-81181961 None:intergenic 45.0%
!!! AATATCTTTTATTTTATTTT+GGG + chr3_3:81177272-81177291 None:intergenic 5.0%
!!! AAATATCTTTTATTTTATTT+TGG + chr3_3:81177273-81177292 None:intergenic 5.0%
!!! TTTAATATTTTTTATGTATT+TGG - chr3_3:81179562-81179581 Msa0477080:intron 5.0%
!!! TTAATATTTTTTATGTATTT+GGG - chr3_3:81179563-81179582 Msa0477080:intron 5.0%
CGCGATGCGATTCGTTGAAA+CGG - chr3_3:81176223-81176242 Msa0477080:three_prime_UTR 50.0%
GGGATAATCGGCAGAGTGAA+AGG + chr3_3:81176294-81176313 None:intergenic 50.0%
CGATTATCCCTCTCGCAACA+AGG - chr3_3:81176304-81176323 Msa0477080:CDS 50.0%
AGCATTACCACTTCCCCCAT+GGG + chr3_3:81176510-81176529 None:intergenic 50.0%
AAGCATTACCACTTCCCCCA+TGG + chr3_3:81176511-81176530 None:intergenic 50.0%
GCACGAGCTTCTCAAACACA+AGG - chr3_3:81176917-81176936 Msa0477080:CDS 50.0%
GATGGGGAACAGTGGAATGA+TGG - chr3_3:81177561-81177580 Msa0477080:intron 50.0%
!!! AGTTTTGAGTATGGGGGGTG+TGG - chr3_3:81178207-81178226 Msa0477080:CDS 50.0%
! CAAGCCTTATCCCGCTAAGT+GGG - chr3_3:81178264-81178283 Msa0477080:intron 50.0%
! AAGCCTTATCCCGCTAAGTG+GGG - chr3_3:81178265-81178284 Msa0477080:intron 50.0%
!! ACCCAGCAACGTACTGGTTA+TGG - chr3_3:81178545-81178564 Msa0477080:intron 50.0%
GTCCATAACCAGTACGTTGC+TGG + chr3_3:81178550-81178569 None:intergenic 50.0%
GTGTGGAGCAGACATTGATG+TGG - chr3_3:81179153-81179172 Msa0477080:intron 50.0%
!! AGACATTGATGTGGTGCTGC+AGG - chr3_3:81179162-81179181 Msa0477080:intron 50.0%
ATCTACCATGTGTCCACCCT+AGG + chr3_3:81179188-81179207 None:intergenic 50.0%
CTTGGCAATAATTGCCGCCA+AGG + chr3_3:81179249-81179268 None:intergenic 50.0%
CTTGGCGGCAATTATTGCCA+AGG - chr3_3:81179247-81179266 Msa0477080:intron 50.0%
GCGGCAATTATTGCCAAGGA+GGG - chr3_3:81179251-81179270 Msa0477080:intron 50.0%
CTGGATGGTCCAATAGCTAG+AGG - chr3_3:81179292-81179311 Msa0477080:intron 50.0%
TGAGCTGACATTATGGAGGC+TGG - chr3_3:81179692-81179711 Msa0477080:intron 50.0%
GTCAGCAAATGGGAAACGGA+AGG + chr3_3:81179735-81179754 None:intergenic 50.0%
! TGAGTTTTACCACTGCGTGC+TGG - chr3_3:81179791-81179810 Msa0477080:intron 50.0%
GCAAGCATACGTGGATAGAC+GGG - chr3_3:81180032-81180051 Msa0477080:intron 50.0%
ATACGTGGATAGACGGGAAC+AGG - chr3_3:81180038-81180057 Msa0477080:intron 50.0%
! GGAGTTAGGAGCGTAAGTGA+AGG + chr3_3:81180578-81180597 None:intergenic 50.0%
TTAAAGGTTGGGGCAGGCAT+AGG - chr3_3:81180627-81180646 Msa0477080:intron 50.0%
GCCTCCTACAAATGTCATGC+AGG - chr3_3:81180735-81180754 Msa0477080:intron 50.0%
! GCTAGCACTGAGATTCGAGT+TGG + chr3_3:81181134-81181153 None:intergenic 50.0%
TAGGATAGTCGAACTGGTGC+AGG + chr3_3:81181227-81181246 None:intergenic 50.0%
TCTGCGTAGGATAGTCGAAC+TGG + chr3_3:81181233-81181252 None:intergenic 50.0%
CGAACCATGAGTCTACCAGA+AGG - chr3_3:81181263-81181282 Msa0477080:CDS 50.0%
TGGGAGCAGGCTTGTAGAAT+AGG + chr3_3:81181586-81181605 None:intergenic 50.0%
ACTTAAGTGTGCATGGGAGC+AGG + chr3_3:81181599-81181618 None:intergenic 50.0%
CGTTGAAACGGAGAGCGATG+CGG - chr3_3:81176235-81176254 Msa0477080:three_prime_UTR 55.0%
GAAGGGACCTTGTTGCGAGA+GGG + chr3_3:81176314-81176333 None:intergenic 55.0%
AGAAGGGACCTTGTTGCGAG+AGG + chr3_3:81176315-81176334 None:intergenic 55.0%
CCACTTAGCGGGATAAGGCT+TGG + chr3_3:81178266-81178285 None:intergenic 55.0%
! CCAAGCCTTATCCCGCTAAG+TGG - chr3_3:81178263-81178282 Msa0477080:intron 55.0%
CTTATCCCGCTAAGTGGGGT+CGG - chr3_3:81178269-81178288 Msa0477080:intron 55.0%
ATGTAGCCGACCCCACTTAG+CGG + chr3_3:81178278-81178297 None:intergenic 55.0%
CTGGGTAGCTAGACTCTCTC+TGG + chr3_3:81178531-81178550 None:intergenic 55.0%
CTAGCTACCCAGCAACGTAC+TGG - chr3_3:81178539-81178558 Msa0477080:intron 55.0%
! CAGACATTGATGGGCCTCCT+TGG - chr3_3:81179229-81179248 Msa0477080:intron 55.0%
! ACATTGATGGGCCTCCTTGG+CGG - chr3_3:81179232-81179251 Msa0477080:intron 55.0%
GGCAATAATTGCCGCCAAGG+AGG + chr3_3:81179246-81179265 None:intergenic 55.0%
GGCGGCAATTATTGCCAAGG+AGG - chr3_3:81179250-81179269 Msa0477080:intron 55.0%
ACTTACTCTCCAGCACGCAG+TGG + chr3_3:81179803-81179822 None:intergenic 55.0%
CTCGAATCTCAGTGCTAGCC+TGG - chr3_3:81181135-81181154 Msa0477080:CDS 55.0%
! TCGTAAGGCGTCTTCTGCGT+AGG + chr3_3:81181246-81181265 None:intergenic 55.0%
TGCAGAAAGGGCGAAGCTCT+AGG + chr3_3:81181758-81181777 None:intergenic 55.0%
GGTACAAGACACCACCAGAG+AGG + chr3_3:81181952-81181971 None:intergenic 55.0%
TGGACGGACGTATGCACCCA+TGG - chr3_3:81176491-81176510 Msa0477080:intron 60.0%
GGACGGACGTATGCACCCAT+GGG - chr3_3:81176492-81176511 Msa0477080:intron 60.0%
GACGGACGTATGCACCCATG+GGG - chr3_3:81176493-81176512 Msa0477080:intron 60.0%
ACGGACGTATGCACCCATGG+GGG - chr3_3:81176494-81176513 Msa0477080:intron 60.0%
GTATGCACCCATGGGGGAAG+TGG - chr3_3:81176500-81176519 Msa0477080:intron 60.0%
CGACCCCACTTAGCGGGATA+AGG + chr3_3:81178271-81178290 None:intergenic 60.0%
TGTAGCCGACCCCACTTAGC+GGG + chr3_3:81178277-81178296 None:intergenic 60.0%
GCTAAGTGGGGTCGGCTACA+TGG - chr3_3:81178277-81178296 Msa0477080:intron 60.0%
!! TGATGTGGTGCTGCAGGCCT+AGG - chr3_3:81179168-81179187 Msa0477080:intron 60.0%
!! GATGTGGTGCTGCAGGCCTA+GGG - chr3_3:81179169-81179188 Msa0477080:intron 60.0%
! GTATGGGGGGTGTGGCAACG+AGG - chr3_3:81178215-81178234 Msa0477080:CDS 65.0%
GCAGGCCTAGGGTGGACACA+TGG - chr3_3:81179180-81179199 Msa0477080:intron 65.0%
!! GTGGTGCTGCAGGCCTAGGG+TGG - chr3_3:81179172-81179191 Msa0477080:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 81175997 81182054 81175997 ID=Msa0477080;Name=Msa0477080
chr3_3 mRNA 81175997 81182054 81175997 ID=Msa0477080-mRNA-1;Parent=Msa0477080;Name=Msa0477080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=230|1|1|1|1|1|13|304|358
chr3_3 exon 81175997 81176356 81175997 ID=Msa0477080-mRNA-1:exon:22377;Parent=Msa0477080-mRNA-1
chr3_3 exon 81176767 81176966 81176767 ID=Msa0477080-mRNA-1:exon:22376;Parent=Msa0477080-mRNA-1
chr3_3 exon 81177197 81177294 81177197 ID=Msa0477080-mRNA-1:exon:22375;Parent=Msa0477080-mRNA-1
chr3_3 exon 81177992 81178048 81177992 ID=Msa0477080-mRNA-1:exon:22374;Parent=Msa0477080-mRNA-1
chr3_3 exon 81178134 81178270 81178134 ID=Msa0477080-mRNA-1:exon:22373;Parent=Msa0477080-mRNA-1
chr3_3 exon 81178403 81178460 81178403 ID=Msa0477080-mRNA-1:exon:22372;Parent=Msa0477080-mRNA-1
chr3_3 exon 81180204 81180296 81180204 ID=Msa0477080-mRNA-1:exon:22371;Parent=Msa0477080-mRNA-1
chr3_3 exon 81180443 81180501 81180443 ID=Msa0477080-mRNA-1:exon:22370;Parent=Msa0477080-mRNA-1
chr3_3 exon 81181113 81181183 81181113 ID=Msa0477080-mRNA-1:exon:22369;Parent=Msa0477080-mRNA-1
chr3_3 exon 81181263 81181311 81181263 ID=Msa0477080-mRNA-1:exon:22368;Parent=Msa0477080-mRNA-1
chr3_3 exon 81181393 81181447 81181393 ID=Msa0477080-mRNA-1:exon:22367;Parent=Msa0477080-mRNA-1
chr3_3 exon 81181530 81181574 81181530 ID=Msa0477080-mRNA-1:exon:22366;Parent=Msa0477080-mRNA-1
chr3_3 exon 81181726 81182054 81181726 ID=Msa0477080-mRNA-1:exon:22365;Parent=Msa0477080-mRNA-1
chr3_3 five_prime_UTR 81181825 81182054 81181825 ID=Msa0477080-mRNA-1:five_prime_utr;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81181726 81181824 81181726 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81181530 81181574 81181530 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81181393 81181447 81181393 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81181263 81181311 81181263 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81181113 81181183 81181113 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81180443 81180501 81180443 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81180204 81180296 81180204 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81178403 81178460 81178403 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81178134 81178270 81178134 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81177992 81178048 81177992 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81177197 81177294 81177197 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81176767 81176966 81176767 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 CDS 81176301 81176356 81176301 ID=Msa0477080-mRNA-1:cds;Parent=Msa0477080-mRNA-1
chr3_3 three_prime_UTR 81175997 81176300 81175997 ID=Msa0477080-mRNA-1:three_prime_utr;Parent=Msa0477080-mRNA-1
Gene Sequence

>Msa0477080

ATGCGATTCGTTGAAACGGAGAGCGATGCGGAAGAATCTATGCGAAAGAGACTCCGAAGTAATTCCTTTCACTCTGCCGATTATCCCTCTCGCAACAAGTTTGAACAATATGCTGGACGGACGTATGCACCCATGGGGGAAGTGAATTTTATGCAGCAGCAAGATGATGATAGTCGCTTGGATATTACACGAGCCAAATTTGGATGTTTGCTTAAAAGACATGAAAACTTGGCTGACCGTATTTCTAGGGATTCTGACAAGGTAATATTTGAGCGTCTACTCAAAGAGTTTGAATCTGCACGAGCTTCTCAAACACAAGAGATATATTTAGATGGGGAACAGTGGAATGATGGTCTACTTGCTACAATAAGAGAGCAGGTGCATATGGAGGCAGAGAGAAAAGCATTGTCTAAAGATGCTGACGTATTAACAAGCCATCAGGAAAAAGTTACATATAAAACTGGAAACAAGATAATTTGCTGTTTGGAAGGAGCAAGAATTGGCATACAGTATGAGACATCTTTTGCTGGTGAAATTTGTGAGTTTTACCACTGCGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAGCACACAGTTCCATTTTTCTTGCCAATACGTGAAACAGAAAATGATCTTCTTTCATCCAATGCAATGAAATTCATTGATCATGTTGGAGATCTATTGCAAGCATACGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAACTTTATGGAAATCAAATCGGAGAGCTGTATCATAGCCTTCCTTATCACATGATCGAGTTTGTATTAGATGATTTTGACTGCAAAGTGACAGTCAGCCTTCGATACACAGATCTCATTTCGGTGCTTCCAACTCGAATCTCAGTGCTAGCCTGGCCAATGTCGAAGATAAATTCTACTCCAATTTTCAACATGATGGAAGATGGAATCTCAGGAAGTCATCCTGCACCAGTTCGACTATCCTACGCAGAAGACGCCTTACGAACCATGAGTCTACCAGAAGCATATGCAGAGATTGTGTTGAATCTTCCACAAGCACTTCAGCAGATATATCATTAA

Protein sequence

>Msa0477080

MRFVETESDAEESMRKRLRSNSFHSADYPSRNKFEQYAGRTYAPMGEVNFMQQQDDDSRLDITRAKFGCLLKRHENLADRISRDSDKVIFERLLKEFESARASQTQEIYLDGEQWNDGLLATIREQVHMEAERKALSKDADVLTSHQEKVTYKTGNKIICCLEGARIGIQYETSFAGEICEFYHCVLESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHVGDLLQAYVDRREQVRLIKELYGNQIGELYHSLPYHMIEFVLDDFDCKVTVSLRYTDLISVLPTRISVLAWPMSKINSTPIFNMMEDGISGSHPAPVRLSYAEDALRTMSLPEAYAEIVLNLPQALQQIYH*