AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858250 MtrunA17_Chr5g0436831 91.279 516 11 2 1 484 1 514 0.0 868
Msa0858250 MtrunA17_Chr7g0253961 27.239 536 301 13 5 471 10 525 1.25e-38 147
Msa0858250 MtrunA17_Chr4g0003211 24.894 470 275 15 68 471 125 582 2.24e-19 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858250 AT5G05740.3 60.342 527 145 9 1 476 1 514 0.0 580
Msa0858250 AT5G05740.2 60.189 530 144 10 1 476 1 517 0.0 577
Msa0858250 AT5G05740.1 57.066 559 144 11 1 476 1 546 0.0 563
Msa0858250 AT5G35220.1 27.135 527 294 16 26 471 14 531 7.43e-40 151
Msa0858250 AT5G35210.1 38.462 117 69 1 280 393 1545 1661 1.35e-15 80.5
Msa0858250 AT1G17870.1 24.733 562 312 20 9 471 3 552 2.00e-14 76.3

Find 138 sgRNAs with CRISPR-Local

Find 565 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATACCCTTTCCCGTTTA+TGG 0.060368 5_4:+55537992 Msa0858250:CDS
CACACTGAACAACTGGAATT+TGG 0.151179 5_4:-55538241 None:intergenic
GGTCTTGTTCTTCTGCTTCT+AGG 0.158404 5_4:+55535901 Msa0858250:CDS
CAATAAATCGGATTGCAAAT+TGG 0.179236 5_4:-55534872 None:intergenic
AAATCTTGTATTGCTAAAAT+TGG 0.182331 5_4:+55538297 Msa0858250:three_prime_UTR
AGGAATGAGAATGAAGAAAA+TGG 0.190261 5_4:-55529701 None:intergenic
CAAGCTTAACTCCAAGGTTT+TGG 0.213368 5_4:-55535366 None:intergenic
TGACAATCTGAATTTGTTAA+AGG 0.219792 5_4:+55535273 Msa0858250:CDS
TCATCAGATAGAGGTGAAAT+TGG 0.254028 5_4:-55537897 None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG 0.263113 5_4:-55536213 None:intergenic
CTATCAACCCTCTTGTCATC+TGG 0.272101 5_4:+55536220 Msa0858250:CDS
AATAAATCGGATTGCAAATT+GGG 0.290251 5_4:-55534871 None:intergenic
ACCCTCTTGTCATCTGGGCT+TGG 0.316440 5_4:+55536226 Msa0858250:CDS
GAAACCCTAACGCCATTAAA+AGG 0.319764 5_4:-55529721 None:intergenic
CTTGTTACTGCACTTATTAT+CGG 0.320323 5_4:+55535313 Msa0858250:CDS
AAATGGAGAAACACAATCTT+TGG 0.324342 5_4:+55531690 Msa0858250:CDS
CCCTCTTGTCATCTGGGCTT+GGG 0.332709 5_4:+55536227 Msa0858250:CDS
AACATTTCACACTGAACAAC+TGG 0.336943 5_4:-55538248 None:intergenic
TGGTGGCAGATAGGCTCTTT+TGG 0.338317 5_4:+55535790 Msa0858250:intron
TGGTTTGGTGCTGCGTCTTT+TGG 0.348500 5_4:+55534811 Msa0858250:CDS
CATCCTCGGGATTGACTAGA+AGG 0.355654 5_4:-55534618 None:intergenic
ATTTATAATTCATTAACAAA+TGG 0.362122 5_4:+55538201 Msa0858250:three_prime_UTR
TCTGGTTGTAAAGTAGTTCT+TGG 0.370039 5_4:-55534664 None:intergenic
GCAGCTGCTGGACCAATTGC+CGG 0.374813 5_4:+55535868 Msa0858250:CDS
TTGTTAAAGGATGGCCTACC+TGG 0.381827 5_4:+55535286 Msa0858250:CDS
TCCCTAACAGCCTCAACAAC+TGG 0.384146 5_4:+55534212 Msa0858250:intron
TTGTTACTGCACTTATTATC+GGG 0.385893 5_4:+55535314 Msa0858250:CDS
GCAAGGGTTTCATCCATAAA+CGG 0.390798 5_4:-55538005 None:intergenic
CCAATTGCCGGATTTGCATT+GGG 0.393078 5_4:+55535880 Msa0858250:CDS
TATCAACCCTCTTGTCATCT+GGG 0.397366 5_4:+55536221 Msa0858250:CDS
GGAATGAGAATGAAGAAAAT+GGG 0.406041 5_4:-55529700 None:intergenic
CTTGTCATCTGGGCTTGGGC+AGG 0.406606 5_4:+55536231 Msa0858250:CDS
TTGCTCAAGATTGCAGCTGC+TGG 0.406860 5_4:+55535856 Msa0858250:CDS
TGATACCTTTCTTCCCCATA+TGG 0.407032 5_4:-55536319 None:intergenic
TTTATAATTCATTAACAAAT+GGG 0.409451 5_4:+55538202 Msa0858250:three_prime_UTR
TGAAGGTAGTGAGAGATTCA+TGG 0.410422 5_4:-55529781 None:intergenic
TTTAGCTGTTCTGCATCTAC+AGG 0.415775 5_4:-55531742 None:intergenic
AACAAGACCCAATGCAAATC+CGG 0.416938 5_4:-55535887 None:intergenic
ACCAATTGCCGGATTTGCAT+TGG 0.418392 5_4:+55535879 Msa0858250:CDS
TTAATGATGTAGCTTTCTAC+TGG 0.420976 5_4:+55537844 Msa0858250:CDS
GAATTATGAAAACGTTTAGA+AGG 0.430104 5_4:-55529873 None:intergenic
CAAGGGTTTCATCCATAAAC+GGG 0.432625 5_4:-55538004 None:intergenic
CAGGCTTCAATTCGCTTCAC+AGG 0.436252 5_4:+55537786 Msa0858250:intron
CCCAATGCAAATCCGGCAAT+TGG 0.439644 5_4:-55535880 None:intergenic
TCCAGCGGGAATACTGTTGA+TGG 0.441942 5_4:-55536268 None:intergenic
ACACTCTGGCAACATCACTA+TGG 0.443383 5_4:+55538057 Msa0858250:three_prime_UTR
CACACACCTCATAAGGATCT+TGG 0.451529 5_4:-55534317 None:intergenic
TCCCGTACTTTGTTCCTAGC+TGG 0.456423 5_4:+55535392 Msa0858250:CDS
GTACTTTGTTCCTAGCTGGC+AGG 0.463565 5_4:+55535396 Msa0858250:CDS
TGAATTATAAATTACAAAAG+TGG 0.464246 5_4:-55538190 None:intergenic
CTTGGAACGACAACGGCCAC+TGG 0.467933 5_4:-55534646 None:intergenic
ATATAGGCACACACCTCATA+AGG 0.468145 5_4:-55534324 None:intergenic
TACAAATCAAAATGATGTGC+AGG 0.470961 5_4:+55531783 Msa0858250:CDS
TGTTCTGCATCTACAGGTGG+AGG 0.473670 5_4:-55531736 None:intergenic
TCCATAAACGGGAAAGGGTA+TGG 0.473818 5_4:-55537993 None:intergenic
CAAAACCTTGGAGTTAAGCT+TGG 0.474152 5_4:+55535367 Msa0858250:CDS
TCATTTCTAGCCGGCGGCAT+TGG 0.474891 5_4:+55535985 Msa0858250:CDS
TTAGCTGTACCTGAGTGGTT+TGG 0.476022 5_4:+55534796 Msa0858250:intron
AAGTAAGTACGAGTTGTCTC+TGG 0.481786 5_4:-55534682 None:intergenic
TACTGTTGATGGCATTGATA+AGG 0.481843 5_4:-55536257 None:intergenic
GCCACTGGCTTATCATCCTC+GGG 0.481990 5_4:-55534631 None:intergenic
CTTCTTCTTCTTCCTGTAGG+AGG 0.484021 5_4:-55529921 None:intergenic
TCAGTTATTTCATCAGATAG+AGG 0.484865 5_4:-55537906 None:intergenic
ATTATCGGGGTACACGAACT+TGG 0.489213 5_4:+55535328 Msa0858250:CDS
TGCCAGCTAGGAACAAAGTA+CGG 0.492497 5_4:-55535394 None:intergenic
ATTCCCGCTGGAGAAATTGA+TGG 0.493577 5_4:+55536279 Msa0858250:CDS
GAGAGGAACGACGCGGAAAG+TGG 0.493739 5_4:-55529808 None:intergenic
GCCAGTGGATCACCTCTGCC+AGG 0.499435 5_4:+55534085 Msa0858250:CDS
GGCCACTGGCTTATCATCCT+CGG 0.500169 5_4:-55534632 None:intergenic
AATGTATCAAAACATACCCT+TGG 0.500360 5_4:+55538128 Msa0858250:three_prime_UTR
CTTATATTCTTCTTGCAAAG+AGG 0.500793 5_4:+55537873 Msa0858250:CDS
GATGACAAGTATGTTGCTCT+TGG 0.507660 5_4:+55537933 Msa0858250:CDS
AGAGCAACATACTTGTCATC+AGG 0.510930 5_4:-55537930 None:intergenic
CGATAATAAGTGCAGTAACA+AGG 0.511270 5_4:-55535312 None:intergenic
ATCACATCATCCAGTTGTTG+AGG 0.517863 5_4:-55534222 None:intergenic
TTGAAGTTGAATCCTCCTAC+AGG 0.519904 5_4:+55529909 Msa0858250:CDS
TTAAGAACTGAAGTTGAGGT+AGG 0.527451 5_4:-55529670 None:intergenic
CCTCCATCAATTTCTCCAGC+GGG 0.528767 5_4:-55536282 None:intergenic
CTTGGTAACGTTCTCAAGGA+AGG 0.529950 5_4:+55536186 Msa0858250:CDS
AATCTGAATTTGTTAAAGGA+TGG 0.531461 5_4:+55535277 Msa0858250:CDS
TTTCATCCATAAACGGGAAA+GGG 0.532666 5_4:-55537998 None:intergenic
TATCATACAACCTGCCAGCT+AGG 0.533569 5_4:-55535406 None:intergenic
ATACCTCCAAGTGACGGTAT+TGG 0.534054 5_4:+55535931 Msa0858250:CDS
CAAGAAGTGCAGTGGGAGAG+AGG 0.540257 5_4:-55529825 None:intergenic
AGTGCAGTAACAAGGGCTCC+AGG 0.541596 5_4:-55535304 None:intergenic
GGGGACATTGCGAAGCAGTA+AGG 0.546571 5_4:-55534851 None:intergenic
GAATTATAAATTACAAAAGT+GGG 0.552588 5_4:-55538189 None:intergenic
TTTGAAACTCAGTATACGGT+AGG 0.552926 5_4:+55538099 Msa0858250:three_prime_UTR
GTTTCTTGGTAACGTTCTCA+AGG 0.553899 5_4:+55536182 Msa0858250:CDS
AGCTGTTCTGCATCTACAGG+TGG 0.557660 5_4:-55531739 None:intergenic
CCCTCCATCAATTTCTCCAG+CGG 0.559231 5_4:-55536283 None:intergenic
TGGAGAAACACAATCTTTGG+AGG 0.560871 5_4:+55531693 Msa0858250:CDS
ATCACCTCTGCCAGGTGTGA+AGG 0.562627 5_4:+55534093 Msa0858250:CDS
ACCTGGCAGAGGTGATCCAC+TGG 0.563174 5_4:-55534086 None:intergenic
GTTTCATCCATAAACGGGAA+AGG 0.563853 5_4:-55537999 None:intergenic
GAAGTTAAGAACTGAAGTTG+AGG 0.566189 5_4:-55529674 None:intergenic
AACAAGCCAAGATCCTTATG+AGG 0.572303 5_4:+55534311 Msa0858250:CDS
GCCATCAACAGTATTCCCGC+TGG 0.575199 5_4:+55536267 Msa0858250:CDS
GCCAGCTAGGAACAAAGTAC+GGG 0.582312 5_4:-55535393 None:intergenic
ACACCAATACCGTCACTTGG+AGG 0.583153 5_4:-55535934 None:intergenic
AATATAATCACCTTCACACC+TGG 0.583486 5_4:-55534103 None:intergenic
GGAACGACGCGGAAAGTGGA+AGG 0.588695 5_4:-55529804 None:intergenic
CACGAGTCATTTCTAGCCGG+CGG 0.588757 5_4:+55535979 Msa0858250:CDS
TGTTACTGCACTTATTATCG+GGG 0.591294 5_4:+55535315 Msa0858250:CDS
ATCACCTTCACACCTGGCAG+AGG 0.594663 5_4:-55534097 None:intergenic
AAGTTGAGGTAGGAAGAAGA+AGG 0.595955 5_4:-55529660 None:intergenic
ACAACACCAATACCGTCACT+TGG 0.597252 5_4:-55535937 None:intergenic
GATAATAAGTGCAGTAACAA+GGG 0.601874 5_4:-55535311 None:intergenic
ACTGTTTCTAGAAACTTGCA+AGG 0.605257 5_4:-55538022 None:intergenic
GGACTCCAAGCTTAACTCCA+AGG 0.609370 5_4:-55535372 None:intergenic
GCCCAAGCCCAGATGACAAG+AGG 0.612324 5_4:-55536228 None:intergenic
TTGAAAGCAAGAAGTGCAGT+GGG 0.613507 5_4:-55529832 None:intergenic
CCCGCTGGAGAAATTGATGG+AGG 0.614785 5_4:+55536282 Msa0858250:CDS
ATATAGCTTACCAATGCCGC+CGG 0.616022 5_4:-55535995 None:intergenic
TTTCACGAGTCATTTCTAGC+CGG 0.617627 5_4:+55535976 Msa0858250:CDS
CCGCTGGAGAAATTGATGGA+GGG 0.622971 5_4:+55536283 Msa0858250:CDS
CTGTTTCTAGAAACTTGCAA+GGG 0.625123 5_4:-55538021 None:intergenic
TAATGATGTAGCTTTCTACT+GGG 0.625802 5_4:+55537845 Msa0858250:CDS
CAGTAACAAGGGCTCCAGGT+AGG 0.628013 5_4:-55535300 None:intergenic
CCCAAGCCCAGATGACAAGA+GGG 0.633593 5_4:-55536227 None:intergenic
TTTGTTATACCTCCAAGTGA+CGG 0.635773 5_4:+55535925 Msa0858250:CDS
GACGCAGCACCAAACCACTC+AGG 0.637018 5_4:-55534805 None:intergenic
GTGGCCACATGCTTACACTC+TGG 0.648274 5_4:+55538043 Msa0858250:three_prime_UTR
GTTCTGCATCTACAGGTGGA+GGG 0.651010 5_4:-55531735 None:intergenic
TGTAGTGTTAATGAGTCTGA+TGG 0.652732 5_4:+55529957 Msa0858250:CDS
ATTGAAAGCAAGAAGTGCAG+TGG 0.654752 5_4:-55529833 None:intergenic
TGGAGGGTTACTTTGCTCAG+AGG 0.654797 5_4:-55531719 None:intergenic
TTGCAAGTTTCTAGAAACAG+TGG 0.658448 5_4:+55538024 Msa0858250:exon
ATAAATCGGATTGCAAATTG+GGG 0.665060 5_4:-55534870 None:intergenic
ACGCGGAAAGTGGAAGGTGA+AGG 0.665132 5_4:-55529798 None:intergenic
TCCCGAGGATGATAAGCCAG+TGG 0.675188 5_4:+55534630 Msa0858250:CDS
AGTAGTTCTTGGAACGACAA+CGG 0.680756 5_4:-55534653 None:intergenic
TTTCCTTCTAGTCAATCCCG+AGG 0.685043 5_4:+55534615 Msa0858250:CDS
AAGAAGAAGGAAGTGACGCG+AGG 0.687574 5_4:-55529647 None:intergenic
GATAACATAGAAGTTGCCAG+TGG 0.714256 5_4:+55534070 Msa0858250:CDS
GTTGCCAGAGTGTAAGCATG+TGG 0.740124 5_4:-55538047 None:intergenic
GTCTGATGGTGATAACGACG+AGG 0.764389 5_4:+55529971 Msa0858250:CDS
AGTGGGAGAGAGGAACGACG+CGG 0.781394 5_4:-55529815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAATTATAACATTTTTT+TGG + chr5_4:55530660-55530679 Msa0858250:intron 10.0%
!! TATATTCTTTAACAATATAT+TGG + chr5_4:55531034-55531053 Msa0858250:intron 10.0%
!!! GAAAAACTTTTTATTTTTAT+AGG + chr5_4:55531456-55531475 Msa0858250:intron 10.0%
!!! AATAGTTTATATTTTATTGA+AGG - chr5_4:55535568-55535587 None:intergenic 10.0%
!! ATTTATAATTCATTAACAAA+TGG + chr5_4:55538201-55538220 Msa0858250:three_prime_UTR 10.0%
!! TTTATAATTCATTAACAAAT+GGG + chr5_4:55538202-55538221 Msa0858250:three_prime_UTR 10.0%
!!! ACATTAATGTACTTTTATTT+TGG + chr5_4:55530470-55530489 Msa0858250:intron 15.0%
!! TAAAACCAAAAAACTATAAT+CGG + chr5_4:55530868-55530887 Msa0858250:intron 15.0%
!! AAAATAATGATATCTTAAGT+TGG + chr5_4:55531232-55531251 Msa0858250:intron 15.0%
!! TTTATTTATCGTAGAATAAT+AGG - chr5_4:55532473-55532492 None:intergenic 15.0%
!! AAATTAAATAGAGGAAATAT+AGG - chr5_4:55534343-55534362 None:intergenic 15.0%
!!! TACAAAATTATTGATCTTTT+AGG + chr5_4:55535064-55535083 Msa0858250:intron 15.0%
!!! GAACATCAATAATAATATTT+TGG - chr5_4:55535241-55535260 None:intergenic 15.0%
!! TTTACATGATATATATTAGA+TGG - chr5_4:55535533-55535552 None:intergenic 15.0%
!! ATAAAATATAAACTATTCAG+AGG + chr5_4:55535571-55535590 Msa0858250:intron 15.0%
!! TTCAAATTATCATTAAACTT+TGG - chr5_4:55536441-55536460 None:intergenic 15.0%
!! GTTTCTTAAATAATACTATT+AGG + chr5_4:55537578-55537597 Msa0858250:intron 15.0%
!! GAATTATAAATTACAAAAGT+GGG - chr5_4:55538192-55538211 None:intergenic 15.0%
!! TGAATTATAAATTACAAAAG+TGG - chr5_4:55538193-55538212 None:intergenic 15.0%
!! TCTTTGTTAAGTAATGTAAT+TGG + chr5_4:55530126-55530145 Msa0858250:intron 20.0%
!! GTATATTCATTAATCATCTA+CGG - chr5_4:55530429-55530448 None:intergenic 20.0%
!!! TCATCAATGTAATTTTGTTA+AGG + chr5_4:55530617-55530636 Msa0858250:intron 20.0%
!!! TAACAATTTTTGAATTTGCA+AGG + chr5_4:55530814-55530833 Msa0858250:intron 20.0%
!! TTAAAGAATCATTTCTCATT+TGG + chr5_4:55531109-55531128 Msa0858250:intron 20.0%
!!! AAGAATAATATGTTGCTATT+TGG - chr5_4:55531502-55531521 None:intergenic 20.0%
!! GTTTAAAAATTGTATTGTCA+AGG - chr5_4:55531645-55531664 None:intergenic 20.0%
!!! TACAATTTTTAAACTTACGT+AGG + chr5_4:55531651-55531670 Msa0858250:intron 20.0%
!! CTTGACTATTATATTCAATA+TGG + chr5_4:55531811-55531830 Msa0858250:intron 20.0%
!! AAAAATAATTACTATGTTCC+TGG + chr5_4:55531936-55531955 Msa0858250:intron 20.0%
!! AGAATCAAAATAATAATTCC+AGG - chr5_4:55531957-55531976 None:intergenic 20.0%
!! AGACAAAAATTTACTTGATT+TGG - chr5_4:55532364-55532383 None:intergenic 20.0%
!! TTAGAACTATTAAATTACAG+AGG + chr5_4:55532521-55532540 Msa0858250:intron 20.0%
!! GAGAAGAAAAATATTTAGAA+GGG + chr5_4:55532871-55532890 Msa0858250:intron 20.0%
!!! AAGATTGGAAATTTTAATTG+AGG + chr5_4:55532961-55532980 Msa0858250:intron 20.0%
!!! AGATTGGAAATTTTAATTGA+GGG + chr5_4:55532962-55532981 Msa0858250:intron 20.0%
!! TTATGTTAGGAATTTCAAAT+CGG - chr5_4:55533005-55533024 None:intergenic 20.0%
!!! ATAATAAATTGCTATGCTTT+TGG + chr5_4:55533048-55533067 Msa0858250:intron 20.0%
!!! TAATAAATTGCTATGCTTTT+GGG + chr5_4:55533049-55533068 Msa0858250:intron 20.0%
!!! AAGAAGTTCAAAATTTTCAA+CGG + chr5_4:55533144-55533163 Msa0858250:intron 20.0%
!! TGATATAACACAAAAAATTG+TGG - chr5_4:55533490-55533509 None:intergenic 20.0%
!! AAGTGTAACTAACAAAAATT+AGG - chr5_4:55533822-55533841 None:intergenic 20.0%
!! TGAGATAATCTTTATCAATT+TGG - chr5_4:55533896-55533915 None:intergenic 20.0%
!!! TTTTATTTTTCTGTTCATGA+TGG - chr5_4:55533955-55533974 None:intergenic 20.0%
!! ACATAAGAGATATGTAAAAA+GGG - chr5_4:55534166-55534185 None:intergenic 20.0%
!! TAAGAAATGAAACAGAAATA+TGG - chr5_4:55534500-55534519 None:intergenic 20.0%
!!! CATTTGTTATAGGATAAATT+TGG + chr5_4:55534577-55534596 Msa0858250:intron 20.0%
!! GATGCATATAATAAACTTTA+GGG + chr5_4:55535593-55535612 Msa0858250:intron 20.0%
!! AGATTCAAATTGACAAAATT+TGG + chr5_4:55535672-55535691 Msa0858250:intron 20.0%
!!! AGAAATTTTGATGCTTAATT+TGG + chr5_4:55535770-55535789 Msa0858250:intron 20.0%
!!! TACAGTTTATTGTTATTACT+TGG + chr5_4:55536898-55536917 Msa0858250:intron 20.0%
!!! ATTTAAAAACTTTTTGTGGA+GGG - chr5_4:55537470-55537489 None:intergenic 20.0%
!!! CAAGATTTAAAAACTTTTTG+TGG - chr5_4:55537474-55537493 None:intergenic 20.0%
!!! CACAAAAAGTTTTTAAATCT+TGG + chr5_4:55537472-55537491 Msa0858250:intron 20.0%
!!! AAAAAGTTTTTAAATCTTGG+TGG + chr5_4:55537475-55537494 Msa0858250:intron 20.0%
!! TATTAGGATATTTAATTGAG+TGG + chr5_4:55537594-55537613 Msa0858250:intron 20.0%
!!! TTTTTTTGAAACTCAGTATA+CGG + chr5_4:55538095-55538114 Msa0858250:three_prime_UTR 20.0%
!! AAATCTTGTATTGCTAAAAT+TGG + chr5_4:55538297-55538316 Msa0858250:three_prime_UTR 20.0%
!! TTCATTCTCATTCCTTTTAA+TGG + chr5_4:55529709-55529728 Msa0858250:five_prime_UTR 25.0%
! GAATTATGAAAACGTTTAGA+AGG - chr5_4:55529876-55529895 None:intergenic 25.0%
!!! GAAGTTTTATACACTAAGTA+AGG + chr5_4:55530039-55530058 Msa0858250:intron 25.0%
! ACAGAAATTACAAGACTATT+TGG + chr5_4:55530338-55530357 Msa0858250:intron 25.0%
!!! TTTATTTTGGTAAATTAGCC+TGG + chr5_4:55530483-55530502 Msa0858250:intron 25.0%
!!! TCTCGATAAGTTTTTTGTTT+GGG + chr5_4:55530689-55530708 Msa0858250:intron 25.0%
!! ATCATTTCTCATTTGGATTT+TGG + chr5_4:55531116-55531135 Msa0858250:intron 25.0%
!!! ATGATATCTTAAGTTGGATA+TGG + chr5_4:55531238-55531257 Msa0858250:intron 25.0%
!!! TGATATCTTAAGTTGGATAT+GGG + chr5_4:55531239-55531258 Msa0858250:intron 25.0%
! TAGCAACATATTATTCTTAG+TGG + chr5_4:55531504-55531523 Msa0858250:intron 25.0%
!! GAAAAGGTATGAAAAAACAA+AGG - chr5_4:55531623-55531642 None:intergenic 25.0%
! AAATTGTATTGTCAAGGAAA+AGG - chr5_4:55531639-55531658 None:intergenic 25.0%
! TATGAAAACTTTGTTGACAT+AGG - chr5_4:55531846-55531865 None:intergenic 25.0%
!! GATGAATTTTCTTAGAGTTT+AGG + chr5_4:55532005-55532024 Msa0858250:intron 25.0%
!!! ATTTCTTTTAACTCTTGAGT+TGG + chr5_4:55532216-55532235 Msa0858250:intron 25.0%
!!! TTTCTTTTAACTCTTGAGTT+GGG + chr5_4:55532217-55532236 Msa0858250:intron 25.0%
!! TGAGATATTGAATAGTTTGT+TGG + chr5_4:55532309-55532328 Msa0858250:intron 25.0%
! CGAGAAGAAAAATATTTAGA+AGG + chr5_4:55532870-55532889 Msa0858250:intron 25.0%
! CATAGCAATTTATTATGCAT+TGG - chr5_4:55533044-55533063 None:intergenic 25.0%
!! AATAAATTGCTATGCTTTTG+GGG + chr5_4:55533050-55533069 Msa0858250:intron 25.0%
!! AAATAATGCCACTTATTCAT+TGG + chr5_4:55533186-55533205 Msa0858250:intron 25.0%
! GTTACAAGGAATAATAAACA+CGG - chr5_4:55533328-55533347 None:intergenic 25.0%
!! TATTTGAGATGACGAATATT+TGG + chr5_4:55533427-55533446 Msa0858250:intron 25.0%
! TACTCATAATTCATGAAAGA+AGG + chr5_4:55533579-55533598 Msa0858250:intron 25.0%
! ACTCATAATTCATGAAAGAA+GGG + chr5_4:55533580-55533599 Msa0858250:intron 25.0%
!!! ATTAAGCATATTTGTTTCTG+TGG + chr5_4:55533623-55533642 Msa0858250:intron 25.0%
! ACAATGACAAGAACTAATTA+GGG - chr5_4:55533768-55533787 None:intergenic 25.0%
! AACAATGACAAGAACTAATT+AGG - chr5_4:55533769-55533788 None:intergenic 25.0%
!! CTGTTTCAAGGATTTAATTT+AGG - chr5_4:55533797-55533816 None:intergenic 25.0%
! CTAAATTAAATCCTTGAAAC+AGG + chr5_4:55533795-55533814 Msa0858250:intron 25.0%
! AACTTAGTATATAAGTCATC+AGG + chr5_4:55533863-55533882 Msa0858250:intron 25.0%
!! GATGGAAAAGATTGTAATTT+TGG - chr5_4:55533937-55533956 None:intergenic 25.0%
!! TTTTCTCATCTATTGTACTT+TGG + chr5_4:55534024-55534043 Msa0858250:intron 25.0%
! TTTCTCATCTATTGTACTTT+GGG + chr5_4:55534025-55534044 Msa0858250:intron 25.0%
! ATTGTGATCAAAACAGAATA+CGG + chr5_4:55534048-55534067 Msa0858250:intron 25.0%
! AATATTTCCTACTTTGTTAG+AGG + chr5_4:55534134-55534153 Msa0858250:intron 25.0%
! CACATAAGAGATATGTAAAA+AGG - chr5_4:55534167-55534186 None:intergenic 25.0%
! ATCCTTAAAAATCAAGTGTT+TGG + chr5_4:55534270-55534289 Msa0858250:CDS 25.0%
! TGCATATGCAAATTAAATAG+AGG - chr5_4:55534352-55534371 None:intergenic 25.0%
!!! TTTAATTTGCATATGCACAA+AGG + chr5_4:55534355-55534374 Msa0858250:intron 25.0%
!!! ATCTGCATAACATTTGTTAT+AGG + chr5_4:55534567-55534586 Msa0858250:intron 25.0%
! ATAAATTTGGAGATGAATAC+AGG + chr5_4:55534590-55534609 Msa0858250:intron 25.0%
! AATAAATCGGATTGCAAATT+GGG - chr5_4:55534874-55534893 None:intergenic 25.0%
! GAAAAATGCTCACAATAAAT+CGG - chr5_4:55534887-55534906 None:intergenic 25.0%
! TAATACTCCATTATCTCTTA+AGG + chr5_4:55534927-55534946 Msa0858250:intron 25.0%
! AATACTCCATTATCTCTTAA+GGG + chr5_4:55534928-55534947 Msa0858250:intron 25.0%
!! ATTCCTTCAAGTAGATTTTA+AGG + chr5_4:55535014-55535033 Msa0858250:intron 25.0%
! TATCCTTAAAATCTACTTGA+AGG - chr5_4:55535020-55535039 None:intergenic 25.0%
! GTATGATTTATTCCTATGAA+AGG - chr5_4:55535156-55535175 None:intergenic 25.0%
!!! TGACAATCTGAATTTGTTAA+AGG + chr5_4:55535273-55535292 Msa0858250:CDS 25.0%
!!! AATCTGAATTTGTTAAAGGA+TGG + chr5_4:55535277-55535296 Msa0858250:CDS 25.0%
! GGATGCATATAATAAACTTT+AGG + chr5_4:55535592-55535611 Msa0858250:intron 25.0%
!! CATATAATAAACTTTAGGGA+TGG + chr5_4:55535597-55535616 Msa0858250:intron 25.0%
! AACCACCTAATTTAATGTTA+TGG + chr5_4:55535639-55535658 Msa0858250:intron 25.0%
! TTCCATAACATTAAATTAGG+TGG - chr5_4:55535644-55535663 None:intergenic 25.0%
! GCATTCCATAACATTAAATT+AGG - chr5_4:55535647-55535666 None:intergenic 25.0%
!!! TGGTATTGATCAATTTGTTT+TGG + chr5_4:55535710-55535729 Msa0858250:intron 25.0%
!!! AATTTTGATGCTTAATTTGG+TGG + chr5_4:55535773-55535792 Msa0858250:intron 25.0%
!!! TTATTTTGATCTTCACTCTT+AGG + chr5_4:55536355-55536374 Msa0858250:intron 25.0%
!!! AGTATCGATTTTATCTCAAA+TGG - chr5_4:55536398-55536417 None:intergenic 25.0%
! ATAAGAGTCAAAATACGAAT+CGG + chr5_4:55536572-55536591 Msa0858250:intron 25.0%
! TTAATGTTGTGTATCTAAAG+AGG - chr5_4:55536672-55536691 None:intergenic 25.0%
!! CTTTGAATTGGATTCTAAAA+TGG - chr5_4:55536791-55536810 None:intergenic 25.0%
!! GATTTAAAAACTTTTTGTGG+AGG - chr5_4:55537471-55537490 None:intergenic 25.0%
! AGTTATGAGTACTTATGAAA+AGG - chr5_4:55537503-55537522 None:intergenic 25.0%
! AAATGTATATTCATACATGC+AGG - chr5_4:55537639-55537658 None:intergenic 25.0%
! AAGGAAGACAATGATATAAA+TGG - chr5_4:55537724-55537743 None:intergenic 25.0%
! TTACACGTAAAAAGAAGTAA+AGG - chr5_4:55537743-55537762 None:intergenic 25.0%
!! TAGTTGAAAATTTTCATCAC+TGG + chr5_4:55538271-55538290 Msa0858250:three_prime_UTR 25.0%
GGAATGAGAATGAAGAAAAT+GGG - chr5_4:55529703-55529722 None:intergenic 30.0%
AGGAATGAGAATGAAGAAAA+TGG - chr5_4:55529704-55529723 None:intergenic 30.0%
TGAAGTTTGTGAAAATTGTG+CGG + chr5_4:55530083-55530102 Msa0858250:intron 30.0%
TGTGGAAAAGTGAATAATCT+AGG + chr5_4:55530529-55530548 Msa0858250:intron 30.0%
GTGGAAAAGTGAATAATCTA+GGG + chr5_4:55530530-55530549 Msa0858250:intron 30.0%
!!! GTCTCGATAAGTTTTTTGTT+TGG + chr5_4:55530688-55530707 Msa0858250:intron 30.0%
!!! TTGTTACTTTTAGTCCTTGA+CGG - chr5_4:55530800-55530819 None:intergenic 30.0%
AACCAAAAAACTATAATCGG+AGG + chr5_4:55530871-55530890 Msa0858250:intron 30.0%
ACCAAAAAACTATAATCGGA+GGG + chr5_4:55530872-55530891 Msa0858250:intron 30.0%
TTTGAACACCTGAAAATTTG+TGG - chr5_4:55530949-55530968 None:intergenic 30.0%
AGTTAAACACTTGACAATTG+TGG + chr5_4:55530978-55530997 Msa0858250:intron 30.0%
! TTTTGCAACAACTTTCTATG+TGG - chr5_4:55531071-55531090 None:intergenic 30.0%
GTAGATGATGTAATAGGAAA+AGG + chr5_4:55531314-55531333 Msa0858250:intron 30.0%
ATAAAAGTGATGAGAGAGAA+AGG + chr5_4:55531362-55531381 Msa0858250:intron 30.0%
TATCAGAAGTGATGTTAAGA+AGG + chr5_4:55531434-55531453 Msa0858250:intron 30.0%
TTCACACATTGTAGAAAGAA+TGG + chr5_4:55531577-55531596 Msa0858250:intron 30.0%
! GAGAAAGAAGCACATAAAAA+TGG + chr5_4:55531673-55531692 Msa0858250:CDS 30.0%
AAATGGAGAAACACAATCTT+TGG + chr5_4:55531690-55531709 Msa0858250:CDS 30.0%
TACAAATCAAAATGATGTGC+AGG + chr5_4:55531783-55531802 Msa0858250:CDS 30.0%
AATGTCCACTTATTCATTGT+TGG + chr5_4:55532051-55532070 Msa0858250:intron 30.0%
ATTCTCCAACAATGAATAAG+TGG - chr5_4:55532059-55532078 None:intergenic 30.0%
AGTAGAGATACTTTCAATGT+AGG - chr5_4:55532173-55532192 None:intergenic 30.0%
TTTGAATGGTAACACAACTT+GGG + chr5_4:55532248-55532267 Msa0858250:intron 30.0%
! AAGACTTTGATAGCACTATT+GGG - chr5_4:55532425-55532444 None:intergenic 30.0%
! TAAGACTTTGATAGCACTAT+TGG - chr5_4:55532426-55532445 None:intergenic 30.0%
AATCTTGGCAAATGTGTATT+GGG - chr5_4:55532584-55532603 None:intergenic 30.0%
!! TTCTCGTTTTATTCACTTGT+AGG - chr5_4:55532856-55532875 None:intergenic 30.0%
TAGAAGGGAAAACTTTGTTA+AGG + chr5_4:55532886-55532905 Msa0858250:intron 30.0%
AGAAGGGAAAACTTTGTTAA+GGG + chr5_4:55532887-55532906 Msa0858250:intron 30.0%
! TTTTCTGACGAAAAGAAGAT+TGG + chr5_4:55532946-55532965 Msa0858250:intron 30.0%
!!! TTGGAAATTTTAATTGAGGG+TGG + chr5_4:55532965-55532984 Msa0858250:intron 30.0%
! TTTTGAACTTCTTCCAAAGA+TGG - chr5_4:55533137-55533156 None:intergenic 30.0%
CTTTACAACCAATGAATAAG+TGG - chr5_4:55533197-55533216 None:intergenic 30.0%
TCATATGACCCTTTATATAG+TGG - chr5_4:55533231-55533250 None:intergenic 30.0%
! AGTAGGGTATACGAATTTTT+GGG + chr5_4:55533353-55533372 Msa0858250:intron 30.0%
AAAATCTGCACAACAAAGAA+GGG - chr5_4:55533539-55533558 None:intergenic 30.0%
AAAAATCTGCACAACAAAGA+AGG - chr5_4:55533540-55533559 None:intergenic 30.0%
TGCTTAATTGCAACTGAAAA+GGG - chr5_4:55533611-55533630 None:intergenic 30.0%
ATGCTTAATTGCAACTGAAA+AGG - chr5_4:55533612-55533631 None:intergenic 30.0%
AAAAATTAGGTCCTGTTTCA+AGG - chr5_4:55533809-55533828 None:intergenic 30.0%
AAACTGTGTTCTTAAGAGTA+AGG + chr5_4:55533986-55534005 Msa0858250:intron 30.0%
GTACAATAGATGAGAAAACT+AGG - chr5_4:55534022-55534041 None:intergenic 30.0%
TGATGTGATAAAAATTCCCA+AGG + chr5_4:55534236-55534255 Msa0858250:CDS 30.0%
!!! AGGATTTCGATTTTTTCCTT+GGG - chr5_4:55534255-55534274 None:intergenic 30.0%
!!! AAGGATTTCGATTTTTTCCT+TGG - chr5_4:55534256-55534275 None:intergenic 30.0%
! AGCCAAACACTTGATTTTTA+AGG - chr5_4:55534275-55534294 None:intergenic 30.0%
! GTTCAGAAGTTATTTCAACA+TGG - chr5_4:55534542-55534561 None:intergenic 30.0%
TTAGAAAATAGTGATGCTCA+TGG + chr5_4:55534746-55534765 Msa0858250:intron 30.0%
ATAAATCGGATTGCAAATTG+GGG - chr5_4:55534873-55534892 None:intergenic 30.0%
CAATAAATCGGATTGCAAAT+TGG - chr5_4:55534875-55534894 None:intergenic 30.0%
GAGTATTAAGTGACAAGAAA+AGG - chr5_4:55534915-55534934 None:intergenic 30.0%
! AATAATTTTGTACCCGAACA+TGG - chr5_4:55535056-55535075 None:intergenic 30.0%
! AGGCTTTGTGTTTATTTAAC+AGG + chr5_4:55535084-55535103 Msa0858250:intron 30.0%
TGATTTATTCCTATGAAAGG+TGG - chr5_4:55535153-55535172 None:intergenic 30.0%
! CATATCATAGATGCATTTTG+AGG + chr5_4:55535210-55535229 Msa0858250:intron 30.0%
GATAATAAGTGCAGTAACAA+GGG - chr5_4:55535314-55535333 None:intergenic 30.0%
CTTGTTACTGCACTTATTAT+CGG + chr5_4:55535313-55535332 Msa0858250:CDS 30.0%
TTGTTACTGCACTTATTATC+GGG + chr5_4:55535314-55535333 Msa0858250:CDS 30.0%
ATTAGGTGGTTTGAAAAAAC+AGG - chr5_4:55535630-55535649 None:intergenic 30.0%
TTTAAGCTTGCATTCATTTG+TGG + chr5_4:55536050-55536069 Msa0858250:intron 30.0%
!! GTTTTAGCAAAACTGTTTCT+TGG + chr5_4:55536168-55536187 Msa0858250:intron 30.0%
! GAGAATTTCTTTTGCCATAT+GGG + chr5_4:55536305-55536324 Msa0858250:CDS 30.0%
! AGAATTTCTTTTGCCATATG+GGG + chr5_4:55536306-55536325 Msa0858250:CDS 30.0%
! AAAAGTGAAACATGATTTGC+CGG + chr5_4:55536506-55536525 Msa0858250:intron 30.0%
TTTCCATCCAAAAAAGAAAC+CGG - chr5_4:55536528-55536547 None:intergenic 30.0%
CAAAATAATAGCTCCAGATT+TGG + chr5_4:55536729-55536748 Msa0858250:intron 30.0%
!! TGAATTGGATTCTAAAATGG+TGG - chr5_4:55536788-55536807 None:intergenic 30.0%
GCATAATGTCATCTTTGAAT+TGG - chr5_4:55536803-55536822 None:intergenic 30.0%
! CAAGCTTTTGATGTTCATAA+AGG - chr5_4:55536877-55536896 None:intergenic 30.0%
CTTTATGAACATCAAAAGCT+TGG + chr5_4:55536875-55536894 Msa0858250:intron 30.0%
! CTATGGTTCTATATAGTCTA+TGG - chr5_4:55537195-55537214 None:intergenic 30.0%
TGGAATAACACTCATTAATC+TGG - chr5_4:55537218-55537237 None:intergenic 30.0%
GAAAAATGGTGGCTAAAATA+TGG - chr5_4:55537318-55537337 None:intergenic 30.0%
TGGTACAAACTAAAACAAGA+GGG - chr5_4:55537435-55537454 None:intergenic 30.0%
CATAACTGTAAATGTCCAAT+TGG + chr5_4:55537516-55537535 Msa0858250:intron 30.0%
CTAACTTAAGTCTATTTCAC+AGG + chr5_4:55537767-55537786 Msa0858250:intron 30.0%
TTAATGATGTAGCTTTCTAC+TGG + chr5_4:55537844-55537863 Msa0858250:CDS 30.0%
TAATGATGTAGCTTTCTACT+GGG + chr5_4:55537845-55537864 Msa0858250:CDS 30.0%
CTTATATTCTTCTTGCAAAG+AGG + chr5_4:55537873-55537892 Msa0858250:CDS 30.0%
! TCAGTTATTTCATCAGATAG+AGG - chr5_4:55537909-55537928 None:intergenic 30.0%
AATGTATCAAAACATACCCT+TGG + chr5_4:55538128-55538147 Msa0858250:three_prime_UTR 30.0%
! AAGTTTTGCAAATGAACCAA+GGG - chr5_4:55538147-55538166 None:intergenic 30.0%
TTAAGAACTGAAGTTGAGGT+AGG - chr5_4:55529673-55529692 None:intergenic 35.0%
GAAGTTAAGAACTGAAGTTG+AGG - chr5_4:55529677-55529696 None:intergenic 35.0%
! TCATTCCTTTTAATGGCGTT+AGG + chr5_4:55529716-55529735 Msa0858250:five_prime_UTR 35.0%
! CATTCCTTTTAATGGCGTTA+GGG + chr5_4:55529717-55529736 Msa0858250:five_prime_UTR 35.0%
! GAGATTCATGGTTTTCGATT+TGG - chr5_4:55529772-55529791 None:intergenic 35.0%
TGTAGTGTTAATGAGTCTGA+TGG + chr5_4:55529957-55529976 Msa0858250:CDS 35.0%
GTAATTGGATTCGTTATGAG+TGG + chr5_4:55530141-55530160 Msa0858250:intron 35.0%
TGCACAATATGTAGATGTCA+GGG - chr5_4:55530747-55530766 None:intergenic 35.0%
TTGCACAATATGTAGATGTC+AGG - chr5_4:55530748-55530767 None:intergenic 35.0%
CATCTACATATTGTGCAATG+TGG + chr5_4:55530750-55530769 Msa0858250:intron 35.0%
!!! TCCCTCCGATTATAGTTTTT+TGG - chr5_4:55530876-55530895 None:intergenic 35.0%
CCAAATTCGTGGTTAACAAA+AGG - chr5_4:55530916-55530935 None:intergenic 35.0%
! CCTTTTGTTAACCACGAATT+TGG + chr5_4:55530913-55530932 Msa0858250:intron 35.0%
! CTTGAAGAATTTAAGATCCC+AGG + chr5_4:55531175-55531194 Msa0858250:intron 35.0%
!! TTAAGTTGGATATGGGTTGT+GGG + chr5_4:55531246-55531265 Msa0858250:intron 35.0%
AAGAAAGAAAGTGAGAGAAG+TGG + chr5_4:55531292-55531311 Msa0858250:intron 35.0%
GAAGTGGTAGATGATGTAAT+AGG + chr5_4:55531308-55531327 Msa0858250:intron 35.0%
AGCTCACATTGATATGTAGA+AGG + chr5_4:55531981-55532000 Msa0858250:intron 35.0%
GCTCACATTGATATGTAGAA+GGG + chr5_4:55531982-55532001 Msa0858250:intron 35.0%
CTCACATTGATATGTAGAAG+GGG + chr5_4:55531983-55532002 Msa0858250:intron 35.0%
TTGAGTCAAGAAACCAAGTA+TGG + chr5_4:55532140-55532159 Msa0858250:intron 35.0%
TGAGTCAAGAAACCAAGTAT+GGG + chr5_4:55532141-55532160 Msa0858250:intron 35.0%
GTTTGAATGGTAACACAACT+TGG + chr5_4:55532247-55532266 Msa0858250:intron 35.0%
TTGAATGGTAACACAACTTG+GGG + chr5_4:55532249-55532268 Msa0858250:intron 35.0%
!! AGTTTGTTGGAGTATTTCCA+TGG + chr5_4:55532322-55532341 Msa0858250:intron 35.0%
GGTGATTGTTAAACCAGAAT+TGG + chr5_4:55532542-55532561 Msa0858250:intron 35.0%
TGTTAAACCAGAATTGGTGA+TGG + chr5_4:55532548-55532567 Msa0858250:intron 35.0%
! GTTAAACCAGAATTGGTGAT+GGG + chr5_4:55532549-55532568 Msa0858250:intron 35.0%
CAATCTTGGCAAATGTGTAT+TGG - chr5_4:55532585-55532604 None:intergenic 35.0%
ATACACATTTGCCAAGATTG+AGG + chr5_4:55532585-55532604 Msa0858250:intron 35.0%
TTCGACACCTTAAAGACTAA+TGG + chr5_4:55532611-55532630 Msa0858250:intron 35.0%
!! AAACACGCCATTAGTCTTTA+AGG - chr5_4:55532621-55532640 None:intergenic 35.0%
TTAAAGACTAATGGCGTGTT+TGG + chr5_4:55532620-55532639 Msa0858250:intron 35.0%
TAAAGACTAATGGCGTGTTT+GGG + chr5_4:55532621-55532640 Msa0858250:intron 35.0%
GTTAGGAAATGGTAACATAC+TGG + chr5_4:55532652-55532671 Msa0858250:intron 35.0%
TCACTTGAGTAGAAGTTTGA+TGG + chr5_4:55532783-55532802 Msa0858250:intron 35.0%
TGCAAGGTGTATAGTACATA+AGG + chr5_4:55532819-55532838 Msa0858250:intron 35.0%
AAGGTGTATAGTACATAAGG+AGG + chr5_4:55532822-55532841 Msa0858250:intron 35.0%
CTCTCGCTTGAATTTATGTT+AGG - chr5_4:55533018-55533037 None:intergenic 35.0%
TTCTGATACTCATCCATCTT+TGG + chr5_4:55533121-55533140 Msa0858250:intron 35.0%
TATGACCCTTTATATAGTGG+CGG - chr5_4:55533228-55533247 None:intergenic 35.0%
ATTCCTTGTAACTCTTGAGT+AGG + chr5_4:55533336-55533355 Msa0858250:intron 35.0%
TTCCTTGTAACTCTTGAGTA+GGG + chr5_4:55533337-55533356 Msa0858250:intron 35.0%
! GAGTAGGGTATACGAATTTT+TGG + chr5_4:55533352-55533371 Msa0858250:intron 35.0%
! GTAGGGTATACGAATTTTTG+GGG + chr5_4:55533354-55533373 Msa0858250:intron 35.0%
TGAGATGACGAATATTTGGT+TGG + chr5_4:55533431-55533450 Msa0858250:intron 35.0%
CTTAATTGCAACTGAAAAGG+GGG - chr5_4:55533609-55533628 None:intergenic 35.0%
GCTTAATTGCAACTGAAAAG+GGG - chr5_4:55533610-55533629 None:intergenic 35.0%
AATATAATCACCTTCACACC+TGG - chr5_4:55534106-55534125 None:intergenic 35.0%
TCTGGTTGTAAAGTAGTTCT+TGG - chr5_4:55534667-55534686 None:intergenic 35.0%
ACTTAACTCCTTCAGAATTG+TGG + chr5_4:55534701-55534720 Msa0858250:intron 35.0%
ACAATGATCCACAATTCTGA+AGG - chr5_4:55534712-55534731 None:intergenic 35.0%
GCAATACCCTTAAGAGATAA+TGG - chr5_4:55534937-55534956 None:intergenic 35.0%
GTCCTAACAAATACCATGTT+CGG + chr5_4:55535040-55535059 Msa0858250:intron 35.0%
TCCTAACAAATACCATGTTC+GGG + chr5_4:55535041-55535060 Msa0858250:intron 35.0%
AAATCTGTTCCACCTTTCAT+AGG + chr5_4:55535141-55535160 Msa0858250:intron 35.0%
CGATAATAAGTGCAGTAACA+AGG - chr5_4:55535315-55535334 None:intergenic 35.0%
TGTTACTGCACTTATTATCG+GGG + chr5_4:55535315-55535334 Msa0858250:CDS 35.0%
!!! TTTTTAGTTGCCCAAAACCT+TGG + chr5_4:55535355-55535374 Msa0858250:CDS 35.0%
! AAGCTTAACTCCAAGGTTTT+GGG - chr5_4:55535368-55535387 None:intergenic 35.0%
!! TTTGGTGACATGTACGATTT+TGG + chr5_4:55535690-55535709 Msa0858250:intron 35.0%
!!! GCTCTTTTGGTTCAATTACA+AGG + chr5_4:55535803-55535822 Msa0858250:CDS 35.0%
! TTTGTTATACCTCCAAGTGA+CGG + chr5_4:55535925-55535944 Msa0858250:CDS 35.0%
!! ACAAGAGGGTTGATAGAAAT+TGG - chr5_4:55536216-55536235 None:intergenic 35.0%
!! TACTGTTGATGGCATTGATA+AGG - chr5_4:55536260-55536279 None:intergenic 35.0%
! GGAGAATTTCTTTTGCCATA+TGG + chr5_4:55536304-55536323 Msa0858250:CDS 35.0%
TTGATCTTCACTCTTAGGTT+TGG + chr5_4:55536360-55536379 Msa0858250:intron 35.0%
TATCAAATGTGATGACTGAG+TGG - chr5_4:55536469-55536488 None:intergenic 35.0%
!!! TGATTTGCCGGTTTCTTTTT+TGG + chr5_4:55536518-55536537 Msa0858250:intron 35.0%
CAAGTGAATGAAACCAAATC+TGG - chr5_4:55536745-55536764 None:intergenic 35.0%
TGGTTTCATTCACTTGAGTT+AGG + chr5_4:55536749-55536768 Msa0858250:intron 35.0%
!! ATTGGATTCTAAAATGGTGG+TGG - chr5_4:55536785-55536804 None:intergenic 35.0%
TTACTTGGATAAACTCTCCA+TGG + chr5_4:55536913-55536932 Msa0858250:intron 35.0%
! TGGTTCTATATAGTCTATGG+CGG - chr5_4:55537192-55537211 None:intergenic 35.0%
AACACTCATTAATCTGGCTA+TGG - chr5_4:55537212-55537231 None:intergenic 35.0%
!!! CTTATTTTTAGCTGCAGGTT+TGG - chr5_4:55537238-55537257 None:intergenic 35.0%
CAAACCTGCAGCTAAAAATA+AGG + chr5_4:55537236-55537255 Msa0858250:intron 35.0%
!!! AAAGCCTTATTTTTAGCTGC+AGG - chr5_4:55537243-55537262 None:intergenic 35.0%
! TGCTGTATTGCTGTCAATTT+TGG + chr5_4:55537273-55537292 Msa0858250:intron 35.0%
TAGGACAAGTTAAGGAAAAG+AGG + chr5_4:55537343-55537362 Msa0858250:intron 35.0%
GTGGTACAAACTAAAACAAG+AGG - chr5_4:55537436-55537455 None:intergenic 35.0%
AACTGTAAATGTCCAATTGG+AGG + chr5_4:55537519-55537538 Msa0858250:intron 35.0%
CTCGAGAGGATAAAAGAATT+TGG - chr5_4:55537552-55537571 None:intergenic 35.0%
CATGCAGGTACATAATCAAA+AGG - chr5_4:55537624-55537643 None:intergenic 35.0%
TCATCAGATAGAGGTGAAAT+TGG - chr5_4:55537900-55537919 None:intergenic 35.0%
TTTCATCCATAAACGGGAAA+GGG - chr5_4:55538001-55538020 None:intergenic 35.0%
!! CTGTTTCTAGAAACTTGCAA+GGG - chr5_4:55538024-55538043 None:intergenic 35.0%
!! ACTGTTTCTAGAAACTTGCA+AGG - chr5_4:55538025-55538044 None:intergenic 35.0%
! TTGCAAGTTTCTAGAAACAG+TGG + chr5_4:55538024-55538043 Msa0858250:exon 35.0%
! TTTGAAACTCAGTATACGGT+AGG + chr5_4:55538099-55538118 Msa0858250:three_prime_UTR 35.0%
! GAAGTTTTGCAAATGAACCA+AGG - chr5_4:55538148-55538167 None:intergenic 35.0%
AACATTTCACACTGAACAAC+TGG - chr5_4:55538251-55538270 None:intergenic 35.0%
AAGTTGAGGTAGGAAGAAGA+AGG - chr5_4:55529663-55529682 None:intergenic 40.0%
GAAACCCTAACGCCATTAAA+AGG - chr5_4:55529724-55529743 None:intergenic 40.0%
TGAAGGTAGTGAGAGATTCA+TGG - chr5_4:55529784-55529803 None:intergenic 40.0%
! TTGAAAGCAAGAAGTGCAGT+GGG - chr5_4:55529835-55529854 None:intergenic 40.0%
! ATTGAAAGCAAGAAGTGCAG+TGG - chr5_4:55529836-55529855 None:intergenic 40.0%
TTGAAGTTGAATCCTCCTAC+AGG + chr5_4:55529909-55529928 Msa0858250:CDS 40.0%
CTTCTTCTTCTTCTTCCTGT+AGG - chr5_4:55529927-55529946 None:intergenic 40.0%
CAGGAAGAAGAAGAAGAAGA+CGG + chr5_4:55529928-55529947 Msa0858250:CDS 40.0%
ATTGGATTCGTTATGAGTGG+TGG + chr5_4:55530144-55530163 Msa0858250:intron 40.0%
AAGACACTGACACTTGTGAT+TGG - chr5_4:55530297-55530316 None:intergenic 40.0%
AGACTCACACACTTTAAGTG+TGG + chr5_4:55530511-55530530 Msa0858250:intron 40.0%
! GCGATCAACCACAAATTTTC+AGG + chr5_4:55530938-55530957 Msa0858250:intron 40.0%
!! CTTAAGTTGGATATGGGTTG+TGG + chr5_4:55531245-55531264 Msa0858250:intron 40.0%
TGGAGAAACACAATCTTTGG+AGG + chr5_4:55531693-55531712 Msa0858250:CDS 40.0%
TTTAGCTGTTCTGCATCTAC+AGG - chr5_4:55531745-55531764 None:intergenic 40.0%
GCAGCTATTTATTGTGTCCA+TGG - chr5_4:55532342-55532361 None:intergenic 40.0%
TCTGCTCTACACTTTCTTTG+TGG + chr5_4:55532381-55532400 Msa0858250:intron 40.0%
CGACAACTCTCAAACAAATG+TGG + chr5_4:55532498-55532517 Msa0858250:intron 40.0%
GTGTCGAATATCCTCAATCT+TGG - chr5_4:55532599-55532618 None:intergenic 40.0%
AAAGACTAATGGCGTGTTTG+GGG + chr5_4:55532622-55532641 Msa0858250:intron 40.0%
!! GTGTTTGGGGATTTCAAGTT+AGG + chr5_4:55532635-55532654 Msa0858250:intron 40.0%
!! GGGGATTTCAAGTTAGGAAA+TGG + chr5_4:55532641-55532660 Msa0858250:intron 40.0%
GGTAACATACTGGATGTTGA+AGG + chr5_4:55532662-55532681 Msa0858250:intron 40.0%
TGATGCCAACATTGTCTCTT+TGG + chr5_4:55532750-55532769 Msa0858250:intron 40.0%
TCTCTCCAAAGAGACAATGT+TGG - chr5_4:55532758-55532777 None:intergenic 40.0%
TACACCTTGCAAAGCTACTT+TGG - chr5_4:55532810-55532829 None:intergenic 40.0%
!! ATAGTACATAAGGAGGTGCT+TGG + chr5_4:55532829-55532848 Msa0858250:intron 40.0%
TACAACCCGCCACTATATAA+AGG + chr5_4:55533219-55533238 Msa0858250:intron 40.0%
ACAACCCGCCACTATATAAA+GGG + chr5_4:55533220-55533239 Msa0858250:intron 40.0%
ATGACCCTTTATATAGTGGC+GGG - chr5_4:55533227-55533246 None:intergenic 40.0%
TGTGTGAGTGGTCATGTATT+AGG + chr5_4:55533286-55533305 Msa0858250:intron 40.0%
TACCCTACTCAAGAGTTACA+AGG - chr5_4:55533342-55533361 None:intergenic 40.0%
ATTTGGTTGGACTGTTTCCA+TGG + chr5_4:55533444-55533463 Msa0858250:intron 40.0%
GCTTGATGAAAAAATGCTCC+TGG + chr5_4:55533684-55533703 Msa0858250:intron 40.0%
CTCAATGTGAAACTGAAACC+AGG - chr5_4:55533705-55533724 None:intergenic 40.0%
CTGGTTTCAGTTTCACATTG+AGG + chr5_4:55533703-55533722 Msa0858250:intron 40.0%
GATAACATAGAAGTTGCCAG+TGG + chr5_4:55534070-55534089 Msa0858250:CDS 40.0%
GAGAATGCCTCTAACAAAGT+AGG - chr5_4:55534144-55534163 None:intergenic 40.0%
GTTAGGGACATATAAAGGAC+AGG - chr5_4:55534200-55534219 None:intergenic 40.0%
AGGCTGTTAGGGACATATAA+AGG - chr5_4:55534205-55534224 None:intergenic 40.0%
ATCACATCATCCAGTTGTTG+AGG - chr5_4:55534225-55534244 None:intergenic 40.0%
AACAAGCCAAGATCCTTATG+AGG + chr5_4:55534311-55534330 Msa0858250:CDS 40.0%
ATATAGGCACACACCTCATA+AGG - chr5_4:55534327-55534346 None:intergenic 40.0%
AGTAGTTCTTGGAACGACAA+CGG - chr5_4:55534656-55534675 None:intergenic 40.0%
AAGTAAGTACGAGTTGTCTC+TGG - chr5_4:55534685-55534704 None:intergenic 40.0%
!!! CTTTTTTAGCTGTACCTGAG+TGG + chr5_4:55534791-55534810 Msa0858250:intron 40.0%
! CCACATGACAACGTTTTGTA+GGG - chr5_4:55534959-55534978 None:intergenic 40.0%
! ACCACATGACAACGTTTTGT+AGG - chr5_4:55534960-55534979 None:intergenic 40.0%
ACCCGAACATGGTATTTGTT+AGG - chr5_4:55535045-55535064 None:intergenic 40.0%
CATACAACCTGTCTTTACTC+TGG + chr5_4:55535171-55535190 Msa0858250:intron 40.0%
TAGTCAACCAGAGTAAAGAC+AGG - chr5_4:55535181-55535200 None:intergenic 40.0%
CAGATTGTCAACAGTTGATC+TGG - chr5_4:55535263-55535282 None:intergenic 40.0%
! CAAGCTTAACTCCAAGGTTT+TGG - chr5_4:55535369-55535388 None:intergenic 40.0%
CAAAACCTTGGAGTTAAGCT+TGG + chr5_4:55535367-55535386 Msa0858250:CDS 40.0%
AACAGACAAACTCGCACAAT+TGG - chr5_4:55535452-55535471 None:intergenic 40.0%
! TGCTTAATTTGGTGGCAGAT+AGG + chr5_4:55535781-55535800 Msa0858250:intron 40.0%
AACAAGACCCAATGCAAATC+CGG - chr5_4:55535890-55535909 None:intergenic 40.0%
!! TTTCACGAGTCATTTCTAGC+CGG + chr5_4:55535976-55535995 Msa0858250:CDS 40.0%
!! GTTTCTTGGTAACGTTCTCA+AGG + chr5_4:55536182-55536201 Msa0858250:CDS 40.0%
TATCAACCCTCTTGTCATCT+GGG + chr5_4:55536221-55536240 Msa0858250:CDS 40.0%
! TTTTGCCATATGGGGAAGAA+AGG + chr5_4:55536314-55536333 Msa0858250:CDS 40.0%
TGATACCTTTCTTCCCCATA+TGG - chr5_4:55536322-55536341 None:intergenic 40.0%
ATCTCAAATGGAACAACCGA+TGG - chr5_4:55536386-55536405 None:intergenic 40.0%
!!! TTGCCGGTTTCTTTTTTGGA+TGG + chr5_4:55536522-55536541 Msa0858250:intron 40.0%
AGTTGCTCATAACCTTGTCA+GGG - chr5_4:55536639-55536658 None:intergenic 40.0%
AAGGTTATGAGCAACTCCAT+TGG + chr5_4:55536643-55536662 Msa0858250:intron 40.0%
AGGTTATGAGCAACTCCATT+GGG + chr5_4:55536644-55536663 Msa0858250:intron 40.0%
!! GATTCTAAAATGGTGGTGGA+TGG - chr5_4:55536781-55536800 None:intergenic 40.0%
GTTCATAAAGGTGAAGCCTT+GGG - chr5_4:55536865-55536884 None:intergenic 40.0%
TGTTCATAAAGGTGAAGCCT+TGG - chr5_4:55536866-55536885 None:intergenic 40.0%
! ATATGCATCTGGAATGACCA+TGG - chr5_4:55536933-55536952 None:intergenic 40.0%
TAGGTCTTGGTATATGCATC+TGG - chr5_4:55536944-55536963 None:intergenic 40.0%
! TTTGCGTTTTCTCAGTACAC+AGG - chr5_4:55536972-55536991 None:intergenic 40.0%
! ATATGGCTTGCAGAATACCT+CGG - chr5_4:55537301-55537320 None:intergenic 40.0%
CTTGTCCTAGAAGCGAAAAA+TGG - chr5_4:55537332-55537351 None:intergenic 40.0%
!! TTCGCTTCTAGGACAAGTTA+AGG + chr5_4:55537335-55537354 Msa0858250:intron 40.0%
AATCAAGCAAGGAGAACACT+TGG - chr5_4:55537369-55537388 None:intergenic 40.0%
TACAGTTTGCGAATCAAGCA+AGG - chr5_4:55537380-55537399 None:intergenic 40.0%
TCGCAAACTGTACAGACATA+AGG + chr5_4:55537388-55537407 Msa0858250:intron 40.0%
AAACAAGAGGGAGAGACAAA+GGG - chr5_4:55537423-55537442 None:intergenic 40.0%
AAAACAAGAGGGAGAGACAA+AGG - chr5_4:55537424-55537443 None:intergenic 40.0%
TGTAAATGTCCAATTGGAGG+AGG + chr5_4:55537522-55537541 Msa0858250:intron 40.0%
TAAGAAACTAGCAACTCGAG+AGG - chr5_4:55537566-55537585 None:intergenic 40.0%
!! GGATTTTCGATTGTGTTGCT+TGG + chr5_4:55537807-55537826 Msa0858250:CDS 40.0%
AGAGCAACATACTTGTCATC+AGG - chr5_4:55537933-55537952 None:intergenic 40.0%
GATGACAAGTATGTTGCTCT+TGG + chr5_4:55537933-55537952 Msa0858250:CDS 40.0%
! TGGAGTAACAGTTTTGCTCT+TGG + chr5_4:55537953-55537972 Msa0858250:CDS 40.0%
! GGAGTAACAGTTTTGCTCTT+GGG + chr5_4:55537954-55537973 Msa0858250:CDS 40.0%
GTTTCATCCATAAACGGGAA+AGG - chr5_4:55538002-55538021 None:intergenic 40.0%
CAAGGGTTTCATCCATAAAC+GGG - chr5_4:55538007-55538026 None:intergenic 40.0%
GCAAGGGTTTCATCCATAAA+CGG - chr5_4:55538008-55538027 None:intergenic 40.0%
CACACTGAACAACTGGAATT+TGG - chr5_4:55538244-55538263 None:intergenic 40.0%
CTTCTTCTTCTTCCTGTAGG+AGG - chr5_4:55529924-55529943 None:intergenic 45.0%
! CGTTATGAGTGGTGGCATTT+TGG + chr5_4:55530152-55530171 Msa0858250:intron 45.0%
!! GGTGGCATTTTGGTATAGCA+TGG + chr5_4:55530162-55530181 Msa0858250:intron 45.0%
CAACCTATGTAGCACAGACA+TGG + chr5_4:55530196-55530215 Msa0858250:intron 45.0%
TGTCCATGTCTGTGCTACAT+AGG - chr5_4:55530202-55530221 None:intergenic 45.0%
TGCAAGTACGTTGATACGCA+GGG - chr5_4:55530569-55530588 None:intergenic 45.0%
! CACAACATCATTTGGGACCT+GGG - chr5_4:55531195-55531214 None:intergenic 45.0%
! TCACAACATCATTTGGGACC+TGG - chr5_4:55531196-55531215 None:intergenic 45.0%
AGGTCCCAAATGATGTTGTG+AGG + chr5_4:55531195-55531214 Msa0858250:intron 45.0%
GGTCCCAAATGATGTTGTGA+GGG + chr5_4:55531196-55531215 Msa0858250:intron 45.0%
GTCCCAAATGATGTTGTGAG+GGG + chr5_4:55531197-55531216 Msa0858250:intron 45.0%
CTCCCCTCACAACATCATTT+GGG - chr5_4:55531202-55531221 None:intergenic 45.0%
ACTCCCCTCACAACATCATT+TGG - chr5_4:55531203-55531222 None:intergenic 45.0%
GGAAACAGACACAAAGTGTG+AGG + chr5_4:55531335-55531354 Msa0858250:intron 45.0%
AACAGACACAAAGTGTGAGG+AGG + chr5_4:55531338-55531357 Msa0858250:intron 45.0%
!! TCCAAAAGCGCTATTGCTCA+TGG + chr5_4:55531912-55531931 Msa0858250:intron 45.0%
!! CCAAAAGCGCTATTGCTCAT+GGG + chr5_4:55531913-55531932 Msa0858250:intron 45.0%
TGTAGGTGATCACCCATACT+TGG - chr5_4:55532156-55532175 None:intergenic 45.0%
GTTGGGCACTCAAGTTTGAA+TGG + chr5_4:55532234-55532253 Msa0858250:intron 45.0%
AATGGTAACACAACTTGGGG+TGG + chr5_4:55532252-55532271 Msa0858250:intron 45.0%
ATGGTAACACAACTTGGGGT+GGG + chr5_4:55532253-55532272 Msa0858250:intron 45.0%
GTAGAACCCATCACCAATTC+TGG - chr5_4:55532558-55532577 None:intergenic 45.0%
ACATATGAACTGCAGCATCG+TGG - chr5_4:55532712-55532731 None:intergenic 45.0%
TTCATATGTCCCAGGATGCA+AGG + chr5_4:55532723-55532742 Msa0858250:intron 45.0%
! TGGTCCAAAGTAGCTTTGCA+AGG + chr5_4:55532803-55532822 Msa0858250:intron 45.0%
GAGAAATGAGCATGTGTGAG+TGG + chr5_4:55533274-55533293 Msa0858250:intron 45.0%
!! GGGTATACGAATTTTTGGGG+TGG + chr5_4:55533357-55533376 Msa0858250:intron 45.0%
!!! TTTTGGGGTGGTACACATAG+TGG + chr5_4:55533369-55533388 Msa0858250:intron 45.0%
TCCAGTTGTTGAGGCTGTTA+GGG - chr5_4:55534216-55534235 None:intergenic 45.0%
ATCCAGTTGTTGAGGCTGTT+AGG - chr5_4:55534217-55534236 None:intergenic 45.0%
CACACACCTCATAAGGATCT+TGG - chr5_4:55534320-55534339 None:intergenic 45.0%
!! TGCACAAAGGTCTTGTTGCA+TGG + chr5_4:55534368-55534387 Msa0858250:intron 45.0%
!! AGGTCTTGTTGCATGGAGAT+TGG + chr5_4:55534375-55534394 Msa0858250:intron 45.0%
!! GGTCTTGTTGCATGGAGATT+GGG + chr5_4:55534376-55534395 Msa0858250:intron 45.0%
! TGGGTCCTGATTTTTCTGCT+AGG + chr5_4:55534395-55534414 Msa0858250:intron 45.0%
! GGGTCCTGATTTTTCTGCTA+GGG + chr5_4:55534396-55534415 Msa0858250:intron 45.0%
! TCCTGATTTTTCTGCTAGGG+TGG + chr5_4:55534399-55534418 Msa0858250:intron 45.0%
TCCACCCTAGCAGAAAAATC+AGG - chr5_4:55534403-55534422 None:intergenic 45.0%
! TAGGGTGGAGTGCTATTCAA+GGG + chr5_4:55534414-55534433 Msa0858250:intron 45.0%
TATTCAAGGGAAACCTGCGA+GGG + chr5_4:55534427-55534446 Msa0858250:intron 45.0%
TTTCCTTCTAGTCAATCCCG+AGG + chr5_4:55534615-55534634 Msa0858250:CDS 45.0%
TTAGCTGTACCTGAGTGGTT+TGG + chr5_4:55534796-55534815 Msa0858250:intron 45.0%
CCCTACAAAACGTTGTCATG+TGG + chr5_4:55534956-55534975 Msa0858250:intron 45.0%
TTGTTAAAGGATGGCCTACC+TGG + chr5_4:55535286-55535305 Msa0858250:CDS 45.0%
ATTATCGGGGTACACGAACT+TGG + chr5_4:55535328-55535347 Msa0858250:CDS 45.0%
TGCCAGCTAGGAACAAAGTA+CGG - chr5_4:55535397-55535416 None:intergenic 45.0%
TATCATACAACCTGCCAGCT+AGG - chr5_4:55535409-55535428 None:intergenic 45.0%
ACCAATTGCCGGATTTGCAT+TGG + chr5_4:55535879-55535898 Msa0858250:CDS 45.0%
CCAATTGCCGGATTTGCATT+GGG + chr5_4:55535880-55535899 Msa0858250:CDS 45.0%
!! GGTCTTGTTCTTCTGCTTCT+AGG + chr5_4:55535901-55535920 Msa0858250:CDS 45.0%
ATACCTCCAAGTGACGGTAT+TGG + chr5_4:55535931-55535950 Msa0858250:CDS 45.0%
ACAACACCAATACCGTCACT+TGG - chr5_4:55535940-55535959 None:intergenic 45.0%
ATATAGCTTACCAATGCCGC+CGG - chr5_4:55535998-55536017 None:intergenic 45.0%
!! CTTGGTAACGTTCTCAAGGA+AGG + chr5_4:55536186-55536205 Msa0858250:CDS 45.0%
CTATCAACCCTCTTGTCATC+TGG + chr5_4:55536220-55536239 Msa0858250:CDS 45.0%
ATTCCCGCTGGAGAAATTGA+TGG + chr5_4:55536279-55536298 Msa0858250:CDS 45.0%
TCACTCTTAGGTTTGGCCAT+CGG + chr5_4:55536367-55536386 Msa0858250:intron 45.0%
GAGTTGCTCATAACCTTGTC+AGG - chr5_4:55536640-55536659 None:intergenic 45.0%
!! GTATCTAAAGAGGCACCCAA+TGG - chr5_4:55536662-55536681 None:intergenic 45.0%
GTCTTTGGCATGCAATGATC+TGG - chr5_4:55536843-55536862 None:intergenic 45.0%
AGCAAACGGCTGCTGTAATT+TGG - chr5_4:55537034-55537053 None:intergenic 45.0%
GGTGACAGTAGATTTGACAC+AGG - chr5_4:55537062-55537081 None:intergenic 45.0%
!! TATGCTTTGGGAGTCCATTC+AGG - chr5_4:55537159-55537178 None:intergenic 45.0%
GGAGTCGAATGCTATGCTTT+GGG - chr5_4:55537171-55537190 None:intergenic 45.0%
!!! TGCTGTCAATTTTGGTTCCG+AGG + chr5_4:55537281-55537300 Msa0858250:intron 45.0%
!! AGCCACCATTTTTCGCTTCT+AGG + chr5_4:55537324-55537343 Msa0858250:intron 45.0%
GTCCTAGAAGCGAAAAATGG+TGG - chr5_4:55537329-55537348 None:intergenic 45.0%
AACAAGAGGGAGAGACAAAG+GGG - chr5_4:55537422-55537441 None:intergenic 45.0%
TTTGGAAAGCCTCCTCCAAT+TGG - chr5_4:55537534-55537553 None:intergenic 45.0%
TCCATAAACGGGAAAGGGTA+TGG - chr5_4:55537996-55538015 None:intergenic 45.0%
ACACTCTGGCAACATCACTA+TGG + chr5_4:55538057-55538076 Msa0858250:three_prime_UTR 45.0%
AAGAAGAAGGAAGTGACGCG+AGG - chr5_4:55529650-55529669 None:intergenic 50.0%
! GTCTGATGGTGATAACGACG+AGG + chr5_4:55529971-55529990 Msa0858250:CDS 50.0%
AGTGTGTGAGTCTCATCACC+AGG - chr5_4:55530504-55530523 None:intergenic 50.0%
TACGTTGATACGCAGGGACA+CGG - chr5_4:55530563-55530582 None:intergenic 50.0%
CTGCAAGTACGTTGATACGC+AGG - chr5_4:55530570-55530589 None:intergenic 50.0%
TTGAGCTACGTATGCCGTCA+AGG + chr5_4:55530783-55530802 Msa0858250:intron 50.0%
GTTGATCGCGTCCAAATTCG+TGG - chr5_4:55530927-55530946 None:intergenic 50.0%
! TGGAGGGTTACTTTGCTCAG+AGG - chr5_4:55531722-55531741 None:intergenic 50.0%
GTTCTGCATCTACAGGTGGA+GGG - chr5_4:55531738-55531757 None:intergenic 50.0%
TGTTCTGCATCTACAGGTGG+AGG - chr5_4:55531739-55531758 None:intergenic 50.0%
AGCTGTTCTGCATCTACAGG+TGG - chr5_4:55531742-55531761 None:intergenic 50.0%
! CCCATGAGCAATAGCGCTTT+TGG - chr5_4:55531916-55531935 None:intergenic 50.0%
CACACCCCACCACTATAAAG+CGG + chr5_4:55532081-55532100 Msa0858250:intron 50.0%
ACACCCCACCACTATAAAGC+GGG + chr5_4:55532082-55532101 Msa0858250:intron 50.0%
CATAGAGCCCCGCTTTATAG+TGG - chr5_4:55532093-55532112 None:intergenic 50.0%
TGCTGCAGTTCATATGTCCC+AGG + chr5_4:55532715-55532734 Msa0858250:intron 50.0%
CATCAGCAACCTTGCATCCT+GGG - chr5_4:55532735-55532754 None:intergenic 50.0%
! GGTGGTACACATAGTGGAGA+GGG + chr5_4:55533375-55533394 Msa0858250:intron 50.0%
TTGGACTGTTTCCATGGACG+TGG + chr5_4:55533450-55533469 Msa0858250:intron 50.0%
TGGACTGTTTCCATGGACGT+GGG + chr5_4:55533451-55533470 Msa0858250:intron 50.0%
! GACACTTTTACCCACGTCCA+TGG - chr5_4:55533464-55533483 None:intergenic 50.0%
TCCCTAACAGCCTCAACAAC+TGG + chr5_4:55534212-55534231 Msa0858250:intron 50.0%
! CTAGGGTGGAGTGCTATTCA+AGG + chr5_4:55534413-55534432 Msa0858250:intron 50.0%
CTATTCAAGGGAAACCTGCG+AGG + chr5_4:55534426-55534445 Msa0858250:intron 50.0%
!! TTTTAGAAGCTTGCCCTCGC+AGG - chr5_4:55534443-55534462 None:intergenic 50.0%
CATCCTCGGGATTGACTAGA+AGG - chr5_4:55534621-55534640 None:intergenic 50.0%
!!! TGGTTTGGTGCTGCGTCTTT+TGG + chr5_4:55534811-55534830 Msa0858250:CDS 50.0%
GGACTCCAAGCTTAACTCCA+AGG - chr5_4:55535375-55535394 None:intergenic 50.0%
TCCCGTACTTTGTTCCTAGC+TGG + chr5_4:55535392-55535411 Msa0858250:CDS 50.0%
GCCAGCTAGGAACAAAGTAC+GGG - chr5_4:55535396-55535415 None:intergenic 50.0%
GTACTTTGTTCCTAGCTGGC+AGG + chr5_4:55535396-55535415 Msa0858250:CDS 50.0%
! TGGTGGCAGATAGGCTCTTT+TGG + chr5_4:55535790-55535809 Msa0858250:intron 50.0%
TTGCTCAAGATTGCAGCTGC+TGG + chr5_4:55535856-55535875 Msa0858250:CDS 50.0%
CCCAATGCAAATCCGGCAAT+TGG - chr5_4:55535883-55535902 None:intergenic 50.0%
ACACCAATACCGTCACTTGG+AGG - chr5_4:55535937-55535956 None:intergenic 50.0%
TCCAGCGGGAATACTGTTGA+TGG - chr5_4:55536271-55536290 None:intergenic 50.0%
CCTCCATCAATTTCTCCAGC+GGG - chr5_4:55536285-55536304 None:intergenic 50.0%
CCCTCCATCAATTTCTCCAG+CGG - chr5_4:55536286-55536305 None:intergenic 50.0%
CCGCTGGAGAAATTGATGGA+GGG + chr5_4:55536283-55536302 Msa0858250:CDS 50.0%
TGCTCATAACCTTGTCAGGG+CGG - chr5_4:55536636-55536655 None:intergenic 50.0%
CATTGCATGCCAAAGACCCA+AGG + chr5_4:55536846-55536865 Msa0858250:intron 50.0%
AAGGTGAAGCCTTGGGTCTT+TGG - chr5_4:55536858-55536877 None:intergenic 50.0%
! TACACAGGAGGCATAGGTCT+TGG - chr5_4:55536957-55536976 None:intergenic 50.0%
! TCTCAGTACACAGGAGGCAT+AGG - chr5_4:55536963-55536982 None:intergenic 50.0%
! GCGTTTTCTCAGTACACAGG+AGG - chr5_4:55536969-55536988 None:intergenic 50.0%
TGACACAGGCAGACAGCAAA+CGG - chr5_4:55537048-55537067 None:intergenic 50.0%
ACGGCTAGAACAACTGCACA+CGG - chr5_4:55537083-55537102 None:intergenic 50.0%
AGACTTGGCAAGCTGGAACA+CGG - chr5_4:55537102-55537121 None:intergenic 50.0%
! GGAGAAGCCAGACCAGATTT+TGG - chr5_4:55537138-55537157 None:intergenic 50.0%
CGGAGTCGAATGCTATGCTT+TGG - chr5_4:55537172-55537191 None:intergenic 50.0%
GTGGAGGGAAAGTAGAGATG+TGG - chr5_4:55537455-55537474 None:intergenic 50.0%
CAGGCTTCAATTCGCTTCAC+AGG + chr5_4:55537786-55537805 Msa0858250:intron 50.0%
GCCATACCCTTTCCCGTTTA+TGG + chr5_4:55537992-55538011 Msa0858250:CDS 50.0%
GTTGCCAGAGTGTAAGCATG+TGG - chr5_4:55538050-55538069 None:intergenic 50.0%
ACGCGGAAAGTGGAAGGTGA+AGG - chr5_4:55529801-55529820 None:intergenic 55.0%
! CAAGAAGTGCAGTGGGAGAG+AGG - chr5_4:55529828-55529847 None:intergenic 55.0%
ACGTTGATACGCAGGGACAC+GGG - chr5_4:55530562-55530581 None:intergenic 55.0%
! CGCTTTATAGTGGTGGGGTG+TGG - chr5_4:55532083-55532102 None:intergenic 55.0%
CACCCCACCACTATAAAGCG+GGG + chr5_4:55532083-55532102 Msa0858250:intron 55.0%
AGCCCCGCTTTATAGTGGTG+GGG - chr5_4:55532088-55532107 None:intergenic 55.0%
GAGCCCCGCTTTATAGTGGT+GGG - chr5_4:55532089-55532108 None:intergenic 55.0%
AGAGCCCCGCTTTATAGTGG+TGG - chr5_4:55532090-55532109 None:intergenic 55.0%
GCATCAGCAACCTTGCATCC+TGG - chr5_4:55532736-55532755 None:intergenic 55.0%
! GGGTGGTACACATAGTGGAG+AGG + chr5_4:55533374-55533393 Msa0858250:intron 55.0%
ATCACCTCTGCCAGGTGTGA+AGG + chr5_4:55534093-55534112 Msa0858250:CDS 55.0%
ATCACCTTCACACCTGGCAG+AGG - chr5_4:55534100-55534119 None:intergenic 55.0%
TCCCGAGGATGATAAGCCAG+TGG + chr5_4:55534630-55534649 Msa0858250:CDS 55.0%
!! GCCACTGGCTTATCATCCTC+GGG - chr5_4:55534634-55534653 None:intergenic 55.0%
!! GGCCACTGGCTTATCATCCT+CGG - chr5_4:55534635-55534654 None:intergenic 55.0%
GGGGACATTGCGAAGCAGTA+AGG - chr5_4:55534854-55534873 None:intergenic 55.0%
CAGTAACAAGGGCTCCAGGT+AGG - chr5_4:55535303-55535322 None:intergenic 55.0%
AGTGCAGTAACAAGGGCTCC+AGG - chr5_4:55535307-55535326 None:intergenic 55.0%
!! CACGAGTCATTTCTAGCCGG+CGG + chr5_4:55535979-55535998 Msa0858250:CDS 55.0%
!! TCATTTCTAGCCGGCGGCAT+TGG + chr5_4:55535985-55536004 Msa0858250:CDS 55.0%
ACCCTCTTGTCATCTGGGCT+TGG + chr5_4:55536226-55536245 Msa0858250:CDS 55.0%
CCCAAGCCCAGATGACAAGA+GGG - chr5_4:55536230-55536249 None:intergenic 55.0%
CCCTCTTGTCATCTGGGCTT+GGG + chr5_4:55536227-55536246 Msa0858250:CDS 55.0%
GCCATCAACAGTATTCCCGC+TGG + chr5_4:55536267-55536286 Msa0858250:CDS 55.0%
CCCGCTGGAGAAATTGATGG+AGG + chr5_4:55536282-55536301 Msa0858250:CDS 55.0%
GGCAGAAGCTGAGAGCTGTT+TGG - chr5_4:55537013-55537032 None:intergenic 55.0%
TCCAGCTTGCCAAGTCTGCT+TGG + chr5_4:55537105-55537124 Msa0858250:intron 55.0%
CCAGCTTGCCAAGTCTGCTT+GGG + chr5_4:55537106-55537125 Msa0858250:intron 55.0%
TTGCCAAGTCTGCTTGGGCT+TGG + chr5_4:55537111-55537130 Msa0858250:intron 55.0%
TGCCAAGTCTGCTTGGGCTT+GGG + chr5_4:55537112-55537131 Msa0858250:intron 55.0%
CTTGGGCTTGGGCCAAAATC+TGG + chr5_4:55537123-55537142 Msa0858250:intron 55.0%
GCTTGGGCCAAAATCTGGTC+TGG + chr5_4:55537128-55537147 Msa0858250:intron 55.0%
! CTGGTCTGGCTTCTCCTGAA+TGG + chr5_4:55537142-55537161 Msa0858250:intron 55.0%
GTGGCCACATGCTTACACTC+TGG + chr5_4:55538043-55538062 Msa0858250:three_prime_UTR 55.0%
GGAACGACGCGGAAAGTGGA+AGG - chr5_4:55529807-55529826 None:intergenic 60.0%
GAGAGGAACGACGCGGAAAG+TGG - chr5_4:55529811-55529830 None:intergenic 60.0%
AGTGGGAGAGAGGAACGACG+CGG - chr5_4:55529818-55529837 None:intergenic 60.0%
CTGACACGTCGACACGACAC+TGG + chr5_4:55530241-55530260 Msa0858250:intron 60.0%
ACCTGGCAGAGGTGATCCAC+TGG - chr5_4:55534089-55534108 None:intergenic 60.0%
CTTGGAACGACAACGGCCAC+TGG - chr5_4:55534649-55534668 None:intergenic 60.0%
GACGCAGCACCAAACCACTC+AGG - chr5_4:55534808-55534827 None:intergenic 60.0%
GCAGCTGCTGGACCAATTGC+CGG + chr5_4:55535868-55535887 Msa0858250:CDS 60.0%
GCCCAAGCCCAGATGACAAG+AGG - chr5_4:55536231-55536250 None:intergenic 60.0%
CTTGTCATCTGGGCTTGGGC+AGG + chr5_4:55536231-55536250 Msa0858250:CDS 60.0%
CCCAAGCAGACTTGGCAAGC+TGG - chr5_4:55537109-55537128 None:intergenic 60.0%
GCCAGTGGATCACCTCTGCC+AGG + chr5_4:55534085-55534104 Msa0858250:CDS 65.0%
GTGATGCAGCCGCCCTGACA+AGG + chr5_4:55536624-55536643 Msa0858250:intron 65.0%
GGCCCAAGCCCAAGCAGACT+TGG - chr5_4:55537117-55537136 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 55529619 55538324 55529619 ID=Msa0858250;Name=Msa0858250
chr5_4 mRNA 55529619 55538324 55529619 ID=Msa0858250-mRNA-1;Parent=Msa0858250;Name=Msa0858250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=164|0.88|0.8|1|0.88|0.9|10|287|484
chr5_4 exon 55529619 55529992 55529619 ID=Msa0858250-mRNA-1:exon:17005;Parent=Msa0858250-mRNA-1
chr5_4 exon 55531673 55531804 55531673 ID=Msa0858250-mRNA-1:exon:17006;Parent=Msa0858250-mRNA-1
chr5_4 exon 55534064 55534114 55534064 ID=Msa0858250-mRNA-1:exon:17007;Parent=Msa0858250-mRNA-1
chr5_4 exon 55534222 55534334 55534222 ID=Msa0858250-mRNA-1:exon:17008;Parent=Msa0858250-mRNA-1
chr5_4 exon 55534612 55534694 55534612 ID=Msa0858250-mRNA-1:exon:17009;Parent=Msa0858250-mRNA-1
chr5_4 exon 55534800 55534893 55534800 ID=Msa0858250-mRNA-1:exon:17010;Parent=Msa0858250-mRNA-1
chr5_4 exon 55535264 55535417 55535264 ID=Msa0858250-mRNA-1:exon:17011;Parent=Msa0858250-mRNA-1
chr5_4 exon 55535799 55536006 55535799 ID=Msa0858250-mRNA-1:exon:17012;Parent=Msa0858250-mRNA-1
chr5_4 exon 55536175 55536335 55536175 ID=Msa0858250-mRNA-1:exon:17013;Parent=Msa0858250-mRNA-1
chr5_4 exon 55537789 55538324 55537789 ID=Msa0858250-mRNA-1:exon:17014;Parent=Msa0858250-mRNA-1
chr5_4 five_prime_UTR 55529619 55529782 55529619 ID=Msa0858250-mRNA-1:five_prime_utr;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55529783 55529992 55529783 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55531673 55531804 55531673 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55534064 55534114 55534064 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55534222 55534334 55534222 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55534612 55534694 55534612 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55534800 55534893 55534800 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55535264 55535417 55535264 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55535799 55536006 55535799 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55536175 55536335 55536175 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 CDS 55537789 55538037 55537789 ID=Msa0858250-mRNA-1:cds;Parent=Msa0858250-mRNA-1
chr5_4 three_prime_UTR 55538038 55538324 55538038 ID=Msa0858250-mRNA-1:three_prime_utr;Parent=Msa0858250-mRNA-1
Gene Sequence

>Msa0858250

ATGAATCTCTCACTACCTTCACCTTCCACTTTCCGCGTCGTTCCTCTCTCCCACTGCACTTCTTGCTTTCAATTCAATCTTCGTTTTCATCCTTCTAAACGTTTTCATAATTCGCGTTCGAGTTCGTTGAAGTTGAATCCTCCTACAGGAAGAAGAAGAAGAAGACGGATTGCTTGTAGTGTTAATGAGTCTGATGGTGATAACGACGAGGAGAAAGAAGCACATAAAAATGGAGAAACACAATCTTTGGAGGATACCTCTGAGCAAAGTAACCCTCCACCTGTAGATGCAGAACAGCTAAACAAGTTTAGTGATGAAAATACAAATCAAAATGATGTGCAGAATACGGATAACATAGAAGTTGCCAGTGGATCACCTCTGCCAGGTGTGAAGCCTCAACAACTGGATGATGTGATAAAAATTCCCAAGGAAAAAATCGAAATCCTTAAAAATCAAGTGTTTGGCTTTGATACTTTTTTTGTAACAAGCCAAGATCCTTATGAGGTGCTTTTCCTTCTAGTCAATCCCGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTATCAACTGTTGACAATCTGAATTTGTTAAAGGATGGCCTACCTGGAGCCCTTGTTACTGCACTTATTATCGGGGTACACGAACTTGGTCACTTTTTAGTTGCCCAAAACCTTGGAGTTAAGCTTGGAGTCCCGTACTTTGTTCCTAGCTGGCAGATAGGCTCTTTTGGTTCAATTACAAGGATAAGAAGCATAGTATCTAATCGTGAAGATTTGCTCAAGATTGCAGCTGCTGGACCAATTGCCGGATTTGCATTGGGTCTTGTTCTTCTGCTTCTAGGTTTTGTTATACCTCCAAGTGACGGTATTGGTGTTGTTGTTGATGCTTCTGTGTTTCACGAGTCATTTCTAGCCGGCGGCATTGCAAAACTGTTTCTTGGTAACGTTCTCAAGGAAGGAACTCCAATTTCTATCAACCCTCTTGTCATCTGGGCTTGGGCAGGACTCCTTATCAATGCCATCAACAGTATTCCCGCTGGAGAAATTGATGGAGGGAGAATTTCTTTTGCCATATGGGGAAGAAAGGCTTCAATTCGCTTCACAGGATTTTCGATTGTGTTGCTTGGACTGTCATCACTGCTTAATGATGTAGCTTTCTACTGGGTAGTTCTTATATTCTTCTTGCAAAGAGGTCCAATTTCACCTCTATCTGATGAAATAACTGAACCTGATGACAAGTATGTTGCTCTTGGAGTAACAGTTTTGCTCTTGGGCTTGTTAGTTTGCTTGCCATACCCTTTCCCGTTTATGGATGAAACCCTTGCAAGTTTCTAG

Protein sequence

>Msa0858250

MNLSLPSPSTFRVVPLSHCTSCFQFNLRFHPSKRFHNSRSSSLKLNPPTGRRRRRRIACSVNESDGDNDEEKEAHKNGETQSLEDTSEQSNPPPVDAEQLNKFSDENTNQNDVQNTDNIEVASGSPLPGVKPQQLDDVIKIPKEKIEILKNQVFGFDTFFVTSQDPYEVLFLLVNPEDDKPVAVVVPRTTLQPETTPVPEWFGAASFGIVTVFTLLLRNVPNLQSDLLSTVDNLNLLKDGLPGALVTALIIGVHELGHFLVAQNLGVKLGVPYFVPSWQIGSFGSITRIRSIVSNREDLLKIAAAGPIAGFALGLVLLLLGFVIPPSDGIGVVVDASVFHESFLAGGIAKLFLGNVLKEGTPISINPLVIWAWAGLLINAINSIPAGEIDGGRISFAIWGRKASIRFTGFSIVLLGLSSLLNDVAFYWVVLIFFLQRGPISPLSDEITEPDDKYVALGVTVLLLGLLVCLPYPFPFMDETLASF*