Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511820 | XP_013461074.1 | 91.270 | 252 | 17 | 1 | 1 | 247 | 1 | 252 | 5.05e-147 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511820 | sp|Q9ZVD2|NHL13_ARATH | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 5.45e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511820 | A0A072V156 | 91.270 | 252 | 17 | 1 | 1 | 247 | 1 | 252 | 2.41e-147 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0511820 | Msa0581390 | 0.800003 | 1.767214e-48 | -8.615850e-47 |
| Msa0511820 | Msa0731990 | 0.846172 | 2.565959e-59 | -8.615850e-47 |
| Msa0511820 | Msa0853250 | 0.859767 | 3.293657e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511820 | MtrunA17_Chr3g0118371 | 91.270 | 252 | 17 | 1 | 1 | 247 | 1 | 252 | 4.65e-151 | 421 |
| Msa0511820 | MtrunA17_Chr5g0440571 | 63.281 | 256 | 85 | 3 | 1 | 248 | 1 | 255 | 6.83e-119 | 339 |
| Msa0511820 | MtrunA17_Chr2g0281401 | 49.615 | 260 | 109 | 5 | 1 | 241 | 1 | 257 | 8.08e-80 | 241 |
| Msa0511820 | MtrunA17_Chr3g0118381 | 68.493 | 146 | 44 | 2 | 104 | 247 | 1 | 146 | 9.50e-69 | 208 |
| Msa0511820 | MtrunA17_Chr3g0118391 | 56.784 | 199 | 84 | 2 | 43 | 241 | 4 | 200 | 3.94e-65 | 201 |
| Msa0511820 | MtrunA17_Chr1g0188801 | 32.669 | 251 | 158 | 5 | 3 | 249 | 7 | 250 | 1.68e-34 | 124 |
| Msa0511820 | MtrunA17_Chr5g0433201 | 31.818 | 264 | 162 | 6 | 1 | 247 | 1 | 263 | 1.10e-33 | 122 |
| Msa0511820 | MtrunA17_Chr3g0109121 | 36.782 | 174 | 99 | 3 | 81 | 249 | 85 | 252 | 3.77e-30 | 112 |
| Msa0511820 | MtrunA17_Chr3g0115651 | 27.876 | 226 | 142 | 7 | 13 | 230 | 16 | 228 | 1.65e-26 | 103 |
| Msa0511820 | MtrunA17_Chr8g0382431 | 28.755 | 233 | 142 | 8 | 24 | 248 | 43 | 259 | 3.57e-23 | 94.7 |
| Msa0511820 | MtrunA17_Chr3g0135711 | 28.358 | 201 | 131 | 6 | 57 | 247 | 56 | 253 | 1.49e-19 | 85.1 |
| Msa0511820 | MtrunA17_Chr4g0067041 | 30.918 | 207 | 119 | 6 | 38 | 227 | 16 | 215 | 3.99e-19 | 83.6 |
| Msa0511820 | MtrunA17_Chr2g0330241 | 27.473 | 182 | 120 | 4 | 77 | 248 | 77 | 256 | 9.14e-18 | 80.1 |
| Msa0511820 | MtrunA17_Chr2g0324111 | 26.699 | 206 | 147 | 3 | 44 | 247 | 17 | 220 | 2.59e-16 | 75.5 |
| Msa0511820 | MtrunA17_Chr7g0267281 | 25.463 | 216 | 148 | 7 | 36 | 245 | 18 | 226 | 3.19e-16 | 75.1 |
| Msa0511820 | MtrunA17_Chr2g0280851 | 27.027 | 148 | 106 | 2 | 76 | 223 | 35 | 180 | 8.72e-15 | 70.9 |
| Msa0511820 | MtrunA17_Chr7g0267231 | 27.717 | 184 | 120 | 7 | 51 | 227 | 29 | 206 | 7.09e-14 | 68.9 |
| Msa0511820 | MtrunA17_Chr1g0177471 | 25.568 | 176 | 120 | 4 | 82 | 248 | 74 | 247 | 8.74e-14 | 68.9 |
| Msa0511820 | MtrunA17_Chr8g0342091 | 25.397 | 252 | 143 | 9 | 5 | 248 | 7 | 221 | 1.07e-13 | 68.2 |
| Msa0511820 | MtrunA17_Chr7g0267301 | 28.108 | 185 | 118 | 8 | 52 | 227 | 29 | 207 | 7.65e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511820 | AT2G27080.1 | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 5.54e-97 | 285 |
| Msa0511820 | AT2G27080.2 | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 5.54e-97 | 285 |
| Msa0511820 | AT5G21130.1 | 45.852 | 229 | 123 | 1 | 19 | 247 | 53 | 280 | 6.57e-71 | 219 |
| Msa0511820 | AT5G36970.1 | 33.205 | 259 | 150 | 9 | 1 | 247 | 1 | 248 | 6.41e-33 | 120 |
| Msa0511820 | AT1G65690.1 | 32.245 | 245 | 159 | 4 | 7 | 249 | 13 | 252 | 4.87e-29 | 110 |
| Msa0511820 | AT1G54540.1 | 32.540 | 252 | 152 | 7 | 1 | 247 | 1 | 239 | 3.03e-28 | 108 |
| Msa0511820 | AT2G35980.1 | 32.461 | 191 | 121 | 6 | 36 | 224 | 16 | 200 | 1.00e-23 | 95.9 |
| Msa0511820 | AT2G22180.1 | 27.542 | 236 | 141 | 8 | 19 | 245 | 75 | 289 | 1.24e-20 | 89.0 |
| Msa0511820 | AT3G11650.1 | 27.228 | 202 | 129 | 5 | 36 | 224 | 17 | 213 | 4.56e-17 | 78.2 |
| Msa0511820 | AT5G22870.1 | 25.405 | 185 | 126 | 4 | 62 | 241 | 26 | 203 | 1.46e-16 | 76.3 |
| Msa0511820 | AT5G06320.1 | 30.000 | 170 | 113 | 5 | 61 | 227 | 44 | 210 | 3.83e-16 | 75.5 |
| Msa0511820 | AT5G11890.1 | 28.866 | 194 | 129 | 4 | 39 | 224 | 60 | 252 | 1.26e-11 | 63.5 |
| Msa0511820 | AT1G17620.1 | 29.258 | 229 | 152 | 6 | 3 | 224 | 4 | 229 | 1.30e-11 | 63.5 |
| Msa0511820 | AT4G09590.1 | 24.468 | 188 | 138 | 3 | 60 | 247 | 20 | 203 | 2.57e-11 | 61.6 |
| Msa0511820 | AT3G52470.1 | 24.444 | 180 | 133 | 2 | 68 | 247 | 24 | 200 | 6.29e-11 | 60.8 |
| Msa0511820 | AT5G53730.1 | 26.351 | 148 | 98 | 5 | 82 | 223 | 44 | 186 | 7.71e-11 | 60.5 |
Find 68 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCTGTTGCTGTCTTTGC+TGG | 0.303551 | 3_4:+61527081 | Msa0511820:CDS |
| ATGCGGTAGGTTTGATCCTT+GGG | 0.329031 | 3_4:-61526996 | None:intergenic |
| GTAGTTATGAATTTGATCTT+TGG | 0.333495 | 3_4:+61527633 | Msa0511820:CDS |
| TTGGAAGGTGGAGAGGCGTT+AGG | 0.343094 | 3_4:-61526930 | None:intergenic |
| GTGCTCATGGCCATCGCTGC+TGG | 0.349050 | 3_4:+61527131 | Msa0511820:CDS |
| ATCGTGTATTTCGGTGCTTC+CGG | 0.360839 | 3_4:-61527176 | None:intergenic |
| GACGTGGAAGGTTAGAGTTA+AGG | 0.387882 | 3_4:+61527550 | Msa0511820:CDS |
| AGGTTTGATCCTTGGGGAGC+TGG | 0.388163 | 3_4:-61526989 | None:intergenic |
| ACACGATCGATCGTGTATTT+CGG | 0.396195 | 3_4:-61527185 | None:intergenic |
| ATCAAACTCCGGTGAAATAG+TGG | 0.403445 | 3_4:-61527240 | None:intergenic |
| CGGCGGCGATGGAGCGGTGT+TGG | 0.430905 | 3_4:-61526949 | None:intergenic |
| GATGCGGTAGGTTTGATCCT+TGG | 0.434091 | 3_4:-61526997 | None:intergenic |
| CGGCATTGAACTTGCGAGAT+CGG | 0.437793 | 3_4:+61527430 | Msa0511820:CDS |
| ATCTTTATCCACTATTTCAC+CGG | 0.446830 | 3_4:+61527232 | Msa0511820:CDS |
| GCGTAACGTTGTGCATTCTC+TGG | 0.446865 | 3_4:-61527026 | None:intergenic |
| ACCGCTCCATCGCCGCCGTC+CGG | 0.448630 | 3_4:+61526954 | Msa0511820:CDS |
| TGTTAGGTTCATTCCCTTGA+CGG | 0.454596 | 3_4:-61527210 | None:intergenic |
| TGCTGTCTTTGCTGGTTCAT+CGG | 0.470949 | 3_4:+61527089 | Msa0511820:CDS |
| CGTTGTGCATTCTCTGGTGG+TGG | 0.481192 | 3_4:-61527020 | None:intergenic |
| AAATAGTGGATAAAGATGTT+AGG | 0.481674 | 3_4:-61527226 | None:intergenic |
| TGGAAGGTGGAGAGGCGTTA+GGG | 0.484091 | 3_4:-61526929 | None:intergenic |
| GTTTCTGTTAAAGCTGATAA+CGG | 0.484250 | 3_4:+61527263 | Msa0511820:CDS |
| GGCGATGGAGCGGTGTTGGA+AGG | 0.486020 | 3_4:-61526945 | None:intergenic |
| ATTTACTCTGATCGTGCTCA+TGG | 0.493417 | 3_4:+61527118 | Msa0511820:CDS |
| TCTCTGTAACGGCGTCCTGC+CGG | 0.493799 | 3_4:+61527352 | Msa0511820:CDS |
| CTCTGGTGGTGGGATGCGGT+AGG | 0.506358 | 3_4:-61527009 | None:intergenic |
| AGCGTTGGTGAATGCGGTTA+CGG | 0.509259 | 3_4:+61527460 | Msa0511820:CDS |
| GAGCTGGATGACATATGTTC+CGG | 0.509609 | 3_4:-61526973 | None:intergenic |
| GCTCTCAGCTTCAACGTTAA+CGG | 0.515780 | 3_4:-61527494 | None:intergenic |
| CCTCCAACTTTAATCTTCAC+CGG | 0.526185 | 3_4:-61527518 | None:intergenic |
| CATTCTCTGGTGGTGGGATG+CGG | 0.527360 | 3_4:-61527013 | None:intergenic |
| ATCGATCGTGTCTCCGTCAA+GGG | 0.528651 | 3_4:+61527197 | Msa0511820:CDS |
| ACGGCTGATAAAACGCCGGC+AGG | 0.534301 | 3_4:-61527367 | None:intergenic |
| TATGTTCCGGACGGCGGCGA+TGG | 0.535007 | 3_4:-61526960 | None:intergenic |
| TCTAACGGTGGATCAGTTAA+CGG | 0.540813 | 3_4:+61527583 | Msa0511820:CDS |
| TCCGGACGGCGGCGATGGAG+CGG | 0.543871 | 3_4:-61526955 | None:intergenic |
| GCACCGGTGAAGATTAAAGT+TGG | 0.544024 | 3_4:+61527515 | Msa0511820:CDS |
| GGGTGAACACGATCAGCCAT+TGG | 0.548503 | 3_4:-61526909 | None:intergenic |
| GACAGCAACAGCATCCGCAC+CGG | 0.556268 | 3_4:-61527073 | None:intergenic |
| GATCGATCGTGTCTCCGTCA+AGG | 0.566932 | 3_4:+61527196 | Msa0511820:CDS |
| CAGACGGTGTTGAAAGGTAA+CGG | 0.567575 | 3_4:+61527410 | Msa0511820:CDS |
| GTGTTTCAGACGGTGTTGAA+AGG | 0.576347 | 3_4:+61527404 | Msa0511820:CDS |
| GGTGGATCAGTTAACGGCGC+AGG | 0.585762 | 3_4:+61527589 | Msa0511820:CDS |
| TCAGAGAGCGTTGGTGAATG+CGG | 0.587887 | 3_4:+61527454 | Msa0511820:CDS |
| AACGTTGAAGCTGAGAGCAC+CGG | 0.589685 | 3_4:+61527499 | Msa0511820:CDS |
| GATGGAGCGGTGTTGGAAGG+TGG | 0.592952 | 3_4:-61526942 | None:intergenic |
| CCGGTGAAGATTAAAGTTGG+AGG | 0.596076 | 3_4:+61527518 | Msa0511820:CDS |
| AGCGGTGTTGGAAGGTGGAG+AGG | 0.599059 | 3_4:-61526937 | None:intergenic |
| CGCCGCAAAAGTCGCCGGTG+CGG | 0.603490 | 3_4:+61527059 | Msa0511820:CDS |
| ACACTCGCCGCAAAAGTCGC+CGG | 0.610216 | 3_4:+61527054 | Msa0511820:CDS |
| TAACGTGACGGTGTTTCAGA+CGG | 0.610689 | 3_4:+61527394 | Msa0511820:CDS |
| TAAGGTTGACTGTGATCTAA+CGG | 0.613562 | 3_4:+61527568 | Msa0511820:CDS |
| TGCGGTAGGTTTGATCCTTG+GGG | 0.618357 | 3_4:-61526995 | None:intergenic |
| GCAGGCGAAGATTGTTGACA+AGG | 0.624423 | 3_4:+61527607 | Msa0511820:CDS |
| AACACCGTCACGTTATTCGA+CGG | 0.636233 | 3_4:-61527386 | None:intergenic |
| GTTGTGCATTCTCTGGTGGT+GGG | 0.643760 | 3_4:-61527019 | None:intergenic |
| TAACGTTGTGCATTCTCTGG+TGG | 0.648494 | 3_4:-61527023 | None:intergenic |
| TTGGAGGATCTGTGAAGACG+TGG | 0.649777 | 3_4:+61527534 | Msa0511820:CDS |
| TTAACAGAAACATCAAACTC+CGG | 0.663859 | 3_4:-61527251 | None:intergenic |
| GAGATCGGATCAGAGAGCGT+TGG | 0.672799 | 3_4:+61527445 | Msa0511820:CDS |
| AGAGGCGTTAGTCTCTGTAA+CGG | 0.674629 | 3_4:+61527341 | Msa0511820:CDS |
| AGGATCTGTGAAGACGTGGA+AGG | 0.675912 | 3_4:+61527538 | Msa0511820:CDS |
| ATATGTCATCCAGCTCCCCA+AGG | 0.678653 | 3_4:+61526980 | Msa0511820:CDS |
| ATGACATATGTTCCGGACGG+CGG | 0.681432 | 3_4:-61526966 | None:intergenic |
| TGGATGACATATGTTCCGGA+CGG | 0.702336 | 3_4:-61526969 | None:intergenic |
| TTCGACGGCTGATAAAACGC+CGG | 0.712718 | 3_4:-61527371 | None:intergenic |
| GGTTGACTGTGATCTAACGG+TGG | 0.726582 | 3_4:+61527571 | Msa0511820:CDS |
| TCAGCCGTCGAATAACGTGA+CGG | 0.740743 | 3_4:+61527382 | Msa0511820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTGTTTTTTACTTGATTGTT+CGG | + | chr3_4:61527153-61527172 | Msa0511820:CDS | 25.0% |
| !!! | AAATAGTGGATAAAGATGTT+AGG | - | chr3_4:61527229-61527248 | None:intergenic | 25.0% |
| ! | GTAGTTATGAATTTGATCTT+TGG | + | chr3_4:61527633-61527652 | Msa0511820:CDS | 25.0% |
| !!! | GTGTTTTTTACTTGATTGTT+CGG | + | chr3_4:61527153-61527172 | Msa0511820:CDS | 25.0% |
| !!! | AAATAGTGGATAAAGATGTT+AGG | - | chr3_4:61527229-61527248 | None:intergenic | 25.0% |
| ! | GTAGTTATGAATTTGATCTT+TGG | + | chr3_4:61527633-61527652 | Msa0511820:CDS | 25.0% |
| ATCTTTATCCACTATTTCAC+CGG | + | chr3_4:61527232-61527251 | Msa0511820:CDS | 30.0% | |
| TTAACAGAAACATCAAACTC+CGG | - | chr3_4:61527254-61527273 | None:intergenic | 30.0% | |
| GTTTCTGTTAAAGCTGATAA+CGG | + | chr3_4:61527263-61527282 | Msa0511820:CDS | 30.0% | |
| ! | GATAACGGTAACAAAAAGAT+CGG | + | chr3_4:61527278-61527297 | Msa0511820:CDS | 30.0% |
| ATCTTTATCCACTATTTCAC+CGG | + | chr3_4:61527232-61527251 | Msa0511820:CDS | 30.0% | |
| TTAACAGAAACATCAAACTC+CGG | - | chr3_4:61527254-61527273 | None:intergenic | 30.0% | |
| GTTTCTGTTAAAGCTGATAA+CGG | + | chr3_4:61527263-61527282 | Msa0511820:CDS | 30.0% | |
| ! | GATAACGGTAACAAAAAGAT+CGG | + | chr3_4:61527278-61527297 | Msa0511820:CDS | 30.0% |
| ! | TTTTTACTTGATTGTTCGGC+CGG | + | chr3_4:61527157-61527176 | Msa0511820:CDS | 35.0% |
| !! | AGCGTTGAAATGTTTTACAG+AGG | + | chr3_4:61527323-61527342 | Msa0511820:CDS | 35.0% |
| TAAGGTTGACTGTGATCTAA+CGG | + | chr3_4:61527568-61527587 | Msa0511820:CDS | 35.0% | |
| ! | TTTTTACTTGATTGTTCGGC+CGG | + | chr3_4:61527157-61527176 | Msa0511820:CDS | 35.0% |
| !! | AGCGTTGAAATGTTTTACAG+AGG | + | chr3_4:61527323-61527342 | Msa0511820:CDS | 35.0% |
| TAAGGTTGACTGTGATCTAA+CGG | + | chr3_4:61527568-61527587 | Msa0511820:CDS | 35.0% | |
| ATTTACTCTGATCGTGCTCA+TGG | + | chr3_4:61527118-61527137 | Msa0511820:CDS | 40.0% | |
| ACACGATCGATCGTGTATTT+CGG | - | chr3_4:61527188-61527207 | None:intergenic | 40.0% | |
| TGTTAGGTTCATTCCCTTGA+CGG | - | chr3_4:61527213-61527232 | None:intergenic | 40.0% | |
| ATCAAACTCCGGTGAAATAG+TGG | - | chr3_4:61527243-61527262 | None:intergenic | 40.0% | |
| CCTCCAACTTTAATCTTCAC+CGG | - | chr3_4:61527521-61527540 | None:intergenic | 40.0% | |
| TCTAACGGTGGATCAGTTAA+CGG | + | chr3_4:61527583-61527602 | Msa0511820:CDS | 40.0% | |
| ATTTACTCTGATCGTGCTCA+TGG | + | chr3_4:61527118-61527137 | Msa0511820:CDS | 40.0% | |
| ACACGATCGATCGTGTATTT+CGG | - | chr3_4:61527188-61527207 | None:intergenic | 40.0% | |
| TGTTAGGTTCATTCCCTTGA+CGG | - | chr3_4:61527213-61527232 | None:intergenic | 40.0% | |
| ATCAAACTCCGGTGAAATAG+TGG | - | chr3_4:61527243-61527262 | None:intergenic | 40.0% | |
| CCTCCAACTTTAATCTTCAC+CGG | - | chr3_4:61527521-61527540 | None:intergenic | 40.0% | |
| TCTAACGGTGGATCAGTTAA+CGG | + | chr3_4:61527583-61527602 | Msa0511820:CDS | 40.0% | |
| TGGATGACATATGTTCCGGA+CGG | - | chr3_4:61526972-61526991 | None:intergenic | 45.0% | |
| GAGCTGGATGACATATGTTC+CGG | - | chr3_4:61526976-61526995 | None:intergenic | 45.0% | |
| ATGCGGTAGGTTTGATCCTT+GGG | - | chr3_4:61526999-61527018 | None:intergenic | 45.0% | |
| TAACGTTGTGCATTCTCTGG+TGG | - | chr3_4:61527026-61527045 | None:intergenic | 45.0% | |
| !! | TGCTGTCTTTGCTGGTTCAT+CGG | + | chr3_4:61527089-61527108 | Msa0511820:CDS | 45.0% |
| GTAAAAAACACCAGCAGCGA+TGG | - | chr3_4:61527144-61527163 | None:intergenic | 45.0% | |
| !! | ATCGTGTATTTCGGTGCTTC+CGG | - | chr3_4:61527179-61527198 | None:intergenic | 45.0% |
| !! | AGAGGCGTTAGTCTCTGTAA+CGG | + | chr3_4:61527341-61527360 | Msa0511820:CDS | 45.0% |
| AACACCGTCACGTTATTCGA+CGG | - | chr3_4:61527389-61527408 | None:intergenic | 45.0% | |
| TAACGTGACGGTGTTTCAGA+CGG | + | chr3_4:61527394-61527413 | Msa0511820:CDS | 45.0% | |
| ! | GTGTTTCAGACGGTGTTGAA+AGG | + | chr3_4:61527404-61527423 | Msa0511820:CDS | 45.0% |
| ! | CAGACGGTGTTGAAAGGTAA+CGG | + | chr3_4:61527410-61527429 | Msa0511820:CDS | 45.0% |
| GCTCTCAGCTTCAACGTTAA+CGG | - | chr3_4:61527497-61527516 | None:intergenic | 45.0% | |
| ! | GCACCGGTGAAGATTAAAGT+TGG | + | chr3_4:61527515-61527534 | Msa0511820:CDS | 45.0% |
| CCGGTGAAGATTAAAGTTGG+AGG | + | chr3_4:61527518-61527537 | Msa0511820:CDS | 45.0% | |
| GACGTGGAAGGTTAGAGTTA+AGG | + | chr3_4:61527550-61527569 | Msa0511820:CDS | 45.0% | |
| TGGATGACATATGTTCCGGA+CGG | - | chr3_4:61526972-61526991 | None:intergenic | 45.0% | |
| GAGCTGGATGACATATGTTC+CGG | - | chr3_4:61526976-61526995 | None:intergenic | 45.0% | |
| ATGCGGTAGGTTTGATCCTT+GGG | - | chr3_4:61526999-61527018 | None:intergenic | 45.0% | |
| TAACGTTGTGCATTCTCTGG+TGG | - | chr3_4:61527026-61527045 | None:intergenic | 45.0% | |
| !! | TGCTGTCTTTGCTGGTTCAT+CGG | + | chr3_4:61527089-61527108 | Msa0511820:CDS | 45.0% |
| GTAAAAAACACCAGCAGCGA+TGG | - | chr3_4:61527144-61527163 | None:intergenic | 45.0% | |
| !! | ATCGTGTATTTCGGTGCTTC+CGG | - | chr3_4:61527179-61527198 | None:intergenic | 45.0% |
| !! | AGAGGCGTTAGTCTCTGTAA+CGG | + | chr3_4:61527341-61527360 | Msa0511820:CDS | 45.0% |
| AACACCGTCACGTTATTCGA+CGG | - | chr3_4:61527389-61527408 | None:intergenic | 45.0% | |
| TAACGTGACGGTGTTTCAGA+CGG | + | chr3_4:61527394-61527413 | Msa0511820:CDS | 45.0% | |
| ! | GTGTTTCAGACGGTGTTGAA+AGG | + | chr3_4:61527404-61527423 | Msa0511820:CDS | 45.0% |
| ! | CAGACGGTGTTGAAAGGTAA+CGG | + | chr3_4:61527410-61527429 | Msa0511820:CDS | 45.0% |
| GCTCTCAGCTTCAACGTTAA+CGG | - | chr3_4:61527497-61527516 | None:intergenic | 45.0% | |
| ! | GCACCGGTGAAGATTAAAGT+TGG | + | chr3_4:61527515-61527534 | Msa0511820:CDS | 45.0% |
| CCGGTGAAGATTAAAGTTGG+AGG | + | chr3_4:61527518-61527537 | Msa0511820:CDS | 45.0% | |
| GACGTGGAAGGTTAGAGTTA+AGG | + | chr3_4:61527550-61527569 | Msa0511820:CDS | 45.0% | |
| ATGACATATGTTCCGGACGG+CGG | - | chr3_4:61526969-61526988 | None:intergenic | 50.0% | |
| ATATGTCATCCAGCTCCCCA+AGG | + | chr3_4:61526980-61526999 | Msa0511820:CDS | 50.0% | |
| TGCGGTAGGTTTGATCCTTG+GGG | - | chr3_4:61526998-61527017 | None:intergenic | 50.0% | |
| GATGCGGTAGGTTTGATCCT+TGG | - | chr3_4:61527000-61527019 | None:intergenic | 50.0% | |
| GTTGTGCATTCTCTGGTGGT+GGG | - | chr3_4:61527022-61527041 | None:intergenic | 50.0% | |
| GCGTAACGTTGTGCATTCTC+TGG | - | chr3_4:61527029-61527048 | None:intergenic | 50.0% | |
| ! | ACTTTTGCGGCGAGTGTAGT+TGG | - | chr3_4:61527051-61527070 | None:intergenic | 50.0% |
| GATGCTGTTGCTGTCTTTGC+TGG | + | chr3_4:61527081-61527100 | Msa0511820:CDS | 50.0% | |
| ATCGATCGTGTCTCCGTCAA+GGG | + | chr3_4:61527197-61527216 | Msa0511820:CDS | 50.0% | |
| TTCGACGGCTGATAAAACGC+CGG | - | chr3_4:61527374-61527393 | None:intergenic | 50.0% | |
| TCAGCCGTCGAATAACGTGA+CGG | + | chr3_4:61527382-61527401 | Msa0511820:CDS | 50.0% | |
| ! | CGGCATTGAACTTGCGAGAT+CGG | + | chr3_4:61527430-61527449 | Msa0511820:CDS | 50.0% |
| !! | TCAGAGAGCGTTGGTGAATG+CGG | + | chr3_4:61527454-61527473 | Msa0511820:CDS | 50.0% |
| !! | AGCGTTGGTGAATGCGGTTA+CGG | + | chr3_4:61527460-61527479 | Msa0511820:CDS | 50.0% |
| ! | AACGTTGAAGCTGAGAGCAC+CGG | + | chr3_4:61527499-61527518 | Msa0511820:CDS | 50.0% |
| TTGGAGGATCTGTGAAGACG+TGG | + | chr3_4:61527534-61527553 | Msa0511820:CDS | 50.0% | |
| AGGATCTGTGAAGACGTGGA+AGG | + | chr3_4:61527538-61527557 | Msa0511820:CDS | 50.0% | |
| GGTTGACTGTGATCTAACGG+TGG | + | chr3_4:61527571-61527590 | Msa0511820:CDS | 50.0% | |
| GCAGGCGAAGATTGTTGACA+AGG | + | chr3_4:61527607-61527626 | Msa0511820:CDS | 50.0% | |
| ATGACATATGTTCCGGACGG+CGG | - | chr3_4:61526969-61526988 | None:intergenic | 50.0% | |
| ATATGTCATCCAGCTCCCCA+AGG | + | chr3_4:61526980-61526999 | Msa0511820:CDS | 50.0% | |
| TGCGGTAGGTTTGATCCTTG+GGG | - | chr3_4:61526998-61527017 | None:intergenic | 50.0% | |
| GATGCGGTAGGTTTGATCCT+TGG | - | chr3_4:61527000-61527019 | None:intergenic | 50.0% | |
| GTTGTGCATTCTCTGGTGGT+GGG | - | chr3_4:61527022-61527041 | None:intergenic | 50.0% | |
| GCGTAACGTTGTGCATTCTC+TGG | - | chr3_4:61527029-61527048 | None:intergenic | 50.0% | |
| ! | ACTTTTGCGGCGAGTGTAGT+TGG | - | chr3_4:61527051-61527070 | None:intergenic | 50.0% |
| GATGCTGTTGCTGTCTTTGC+TGG | + | chr3_4:61527081-61527100 | Msa0511820:CDS | 50.0% | |
| ATCGATCGTGTCTCCGTCAA+GGG | + | chr3_4:61527197-61527216 | Msa0511820:CDS | 50.0% | |
| TTCGACGGCTGATAAAACGC+CGG | - | chr3_4:61527374-61527393 | None:intergenic | 50.0% | |
| TCAGCCGTCGAATAACGTGA+CGG | + | chr3_4:61527382-61527401 | Msa0511820:CDS | 50.0% | |
| ! | CGGCATTGAACTTGCGAGAT+CGG | + | chr3_4:61527430-61527449 | Msa0511820:CDS | 50.0% |
| !! | TCAGAGAGCGTTGGTGAATG+CGG | + | chr3_4:61527454-61527473 | Msa0511820:CDS | 50.0% |
| !! | AGCGTTGGTGAATGCGGTTA+CGG | + | chr3_4:61527460-61527479 | Msa0511820:CDS | 50.0% |
| ! | AACGTTGAAGCTGAGAGCAC+CGG | + | chr3_4:61527499-61527518 | Msa0511820:CDS | 50.0% |
| TTGGAGGATCTGTGAAGACG+TGG | + | chr3_4:61527534-61527553 | Msa0511820:CDS | 50.0% | |
| AGGATCTGTGAAGACGTGGA+AGG | + | chr3_4:61527538-61527557 | Msa0511820:CDS | 50.0% | |
| GGTTGACTGTGATCTAACGG+TGG | + | chr3_4:61527571-61527590 | Msa0511820:CDS | 50.0% | |
| GCAGGCGAAGATTGTTGACA+AGG | + | chr3_4:61527607-61527626 | Msa0511820:CDS | 50.0% | |
| !! | TGGAAGGTGGAGAGGCGTTA+GGG | - | chr3_4:61526932-61526951 | None:intergenic | 55.0% |
| !! | TTGGAAGGTGGAGAGGCGTT+AGG | - | chr3_4:61526933-61526952 | None:intergenic | 55.0% |
| AGGTTTGATCCTTGGGGAGC+TGG | - | chr3_4:61526992-61527011 | None:intergenic | 55.0% | |
| !! | CATTCTCTGGTGGTGGGATG+CGG | - | chr3_4:61527016-61527035 | None:intergenic | 55.0% |
| CGTTGTGCATTCTCTGGTGG+TGG | - | chr3_4:61527023-61527042 | None:intergenic | 55.0% | |
| GATCGATCGTGTCTCCGTCA+AGG | + | chr3_4:61527196-61527215 | Msa0511820:CDS | 55.0% | |
| ! | GAGATCGGATCAGAGAGCGT+TGG | + | chr3_4:61527445-61527464 | Msa0511820:CDS | 55.0% |
| !! | TGGAAGGTGGAGAGGCGTTA+GGG | - | chr3_4:61526932-61526951 | None:intergenic | 55.0% |
| !! | TTGGAAGGTGGAGAGGCGTT+AGG | - | chr3_4:61526933-61526952 | None:intergenic | 55.0% |
| AGGTTTGATCCTTGGGGAGC+TGG | - | chr3_4:61526992-61527011 | None:intergenic | 55.0% | |
| !! | CATTCTCTGGTGGTGGGATG+CGG | - | chr3_4:61527016-61527035 | None:intergenic | 55.0% |
| CGTTGTGCATTCTCTGGTGG+TGG | - | chr3_4:61527023-61527042 | None:intergenic | 55.0% | |
| GATCGATCGTGTCTCCGTCA+AGG | + | chr3_4:61527196-61527215 | Msa0511820:CDS | 55.0% | |
| ! | GAGATCGGATCAGAGAGCGT+TGG | + | chr3_4:61527445-61527464 | Msa0511820:CDS | 55.0% |
| ! | AGCGGTGTTGGAAGGTGGAG+AGG | - | chr3_4:61526940-61526959 | None:intergenic | 60.0% |
| ! | GATGGAGCGGTGTTGGAAGG+TGG | - | chr3_4:61526945-61526964 | None:intergenic | 60.0% |
| ACACTCGCCGCAAAAGTCGC+CGG | + | chr3_4:61527054-61527073 | Msa0511820:CDS | 60.0% | |
| !! | ATCCGCACCGGCGACTTTTG+CGG | - | chr3_4:61527064-61527083 | None:intergenic | 60.0% |
| GACAGCAACAGCATCCGCAC+CGG | - | chr3_4:61527076-61527095 | None:intergenic | 60.0% | |
| TCTCTGTAACGGCGTCCTGC+CGG | + | chr3_4:61527352-61527371 | Msa0511820:CDS | 60.0% | |
| ACGGCTGATAAAACGCCGGC+AGG | - | chr3_4:61527370-61527389 | None:intergenic | 60.0% | |
| GGTGGATCAGTTAACGGCGC+AGG | + | chr3_4:61527589-61527608 | Msa0511820:CDS | 60.0% | |
| ! | AGCGGTGTTGGAAGGTGGAG+AGG | - | chr3_4:61526940-61526959 | None:intergenic | 60.0% |
| ! | GATGGAGCGGTGTTGGAAGG+TGG | - | chr3_4:61526945-61526964 | None:intergenic | 60.0% |
| ACACTCGCCGCAAAAGTCGC+CGG | + | chr3_4:61527054-61527073 | Msa0511820:CDS | 60.0% | |
| !! | ATCCGCACCGGCGACTTTTG+CGG | - | chr3_4:61527064-61527083 | None:intergenic | 60.0% |
| GACAGCAACAGCATCCGCAC+CGG | - | chr3_4:61527076-61527095 | None:intergenic | 60.0% | |
| TCTCTGTAACGGCGTCCTGC+CGG | + | chr3_4:61527352-61527371 | Msa0511820:CDS | 60.0% | |
| ACGGCTGATAAAACGCCGGC+AGG | - | chr3_4:61527370-61527389 | None:intergenic | 60.0% | |
| GGTGGATCAGTTAACGGCGC+AGG | + | chr3_4:61527589-61527608 | Msa0511820:CDS | 60.0% | |
| ! | GGCGATGGAGCGGTGTTGGA+AGG | - | chr3_4:61526948-61526967 | None:intergenic | 65.0% |
| TATGTTCCGGACGGCGGCGA+TGG | - | chr3_4:61526963-61526982 | None:intergenic | 65.0% | |
| !! | CTCTGGTGGTGGGATGCGGT+AGG | - | chr3_4:61527012-61527031 | None:intergenic | 65.0% |
| GTGCTCATGGCCATCGCTGC+TGG | + | chr3_4:61527131-61527150 | Msa0511820:CDS | 65.0% | |
| ! | GGCGATGGAGCGGTGTTGGA+AGG | - | chr3_4:61526948-61526967 | None:intergenic | 65.0% |
| TATGTTCCGGACGGCGGCGA+TGG | - | chr3_4:61526963-61526982 | None:intergenic | 65.0% | |
| !! | CTCTGGTGGTGGGATGCGGT+AGG | - | chr3_4:61527012-61527031 | None:intergenic | 65.0% |
| GTGCTCATGGCCATCGCTGC+TGG | + | chr3_4:61527131-61527150 | Msa0511820:CDS | 65.0% | |
| CGCCGCAAAAGTCGCCGGTG+CGG | + | chr3_4:61527059-61527078 | Msa0511820:CDS | 70.0% | |
| CGCCGCAAAAGTCGCCGGTG+CGG | + | chr3_4:61527059-61527078 | Msa0511820:CDS | 70.0% | |
| CGGCGGCGATGGAGCGGTGT+TGG | - | chr3_4:61526952-61526971 | None:intergenic | 75.0% | |
| ACCGCTCCATCGCCGCCGTC+CGG | + | chr3_4:61526954-61526973 | Msa0511820:CDS | 75.0% | |
| TCCGGACGGCGGCGATGGAG+CGG | - | chr3_4:61526958-61526977 | None:intergenic | 75.0% | |
| CGGCGGCGATGGAGCGGTGT+TGG | - | chr3_4:61526952-61526971 | None:intergenic | 75.0% | |
| ACCGCTCCATCGCCGCCGTC+CGG | + | chr3_4:61526954-61526973 | Msa0511820:CDS | 75.0% | |
| TCCGGACGGCGGCGATGGAG+CGG | - | chr3_4:61526958-61526977 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 61526912 | 61527661 | 61526912 | ID=Msa0511820;Name=Msa0511820 |
| chr3_4 | mRNA | 61526912 | 61527661 | 61526912 | ID=Msa0511820-mRNA-1;Parent=Msa0511820;Name=Msa0511820-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|249 |
| chr3_4 | exon | 61526912 | 61527661 | 61526912 | ID=Msa0511820-mRNA-1:exon:15022;Parent=Msa0511820-mRNA-1 |
| chr3_4 | CDS | 61526912 | 61527661 | 61526912 | ID=Msa0511820-mRNA-1:cds;Parent=Msa0511820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
