Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731990 | XP_003615144.1 | 94.620 | 316 | 17 | 0 | 31 | 346 | 1 | 316 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731990 | sp|O82161|PHI1_TOBAC | 73.163 | 313 | 75 | 4 | 38 | 346 | 6 | 313 | 5.10e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731990 | G7KBC1 | 94.620 | 316 | 17 | 0 | 31 | 346 | 1 | 316 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731980 | Msa0731990 | 0.874152 | 8.441814e-68 | -8.615850e-47 |
| Msa0731990 | Msa0732010 | 0.876379 | 1.463327e-68 | -8.615850e-47 |
| Msa0731990 | Msa0810190 | 0.828114 | 1.076346e-54 | -8.615850e-47 |
| Msa0731990 | Msa0853250 | 0.830369 | 3.053226e-55 | -8.615850e-47 |
| Msa0418300 | Msa0731990 | 0.828115 | 1.075476e-54 | -8.615850e-47 |
| Msa0358010 | Msa0731990 | 0.800596 | 1.338288e-48 | -8.615850e-47 |
| Msa0511820 | Msa0731990 | 0.846172 | 2.565959e-59 | -8.615850e-47 |
| Msa0581370 | Msa0731990 | 0.803023 | 4.247614e-49 | -8.615850e-47 |
| Msa0581390 | Msa0731990 | 0.808481 | 3.032401e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731990 | MtrunA17_Chr5g0426441 | 91.159 | 328 | 28 | 1 | 19 | 346 | 13 | 339 | 0.0 | 604 |
| Msa0731990 | MtrunA17_Chr5g0426441 | 94.534 | 311 | 17 | 0 | 36 | 346 | 648 | 958 | 0.0 | 602 |
| Msa0731990 | MtrunA17_Chr5g0426441 | 93.569 | 311 | 19 | 1 | 36 | 346 | 339 | 648 | 0.0 | 593 |
| Msa0731990 | MtrunA17_Chr3g0116001 | 78.114 | 297 | 52 | 3 | 50 | 346 | 21 | 304 | 1.75e-169 | 473 |
| Msa0731990 | MtrunA17_Chr3g0116011 | 77.104 | 297 | 55 | 3 | 50 | 346 | 21 | 304 | 6.77e-168 | 469 |
| Msa0731990 | MtrunA17_Chr3g0115951 | 71.160 | 319 | 87 | 4 | 31 | 346 | 1 | 317 | 2.98e-156 | 441 |
| Msa0731990 | MtrunA17_Chr4g0050321 | 60.702 | 285 | 98 | 3 | 62 | 346 | 30 | 300 | 1.72e-121 | 352 |
| Msa0731990 | MtrunA17_Chr2g0279311 | 52.997 | 317 | 134 | 6 | 31 | 346 | 2 | 304 | 1.96e-119 | 347 |
| Msa0731990 | MtrunA17_Chr4g0018171 | 35.417 | 288 | 164 | 8 | 55 | 331 | 53 | 329 | 7.07e-47 | 162 |
| Msa0731990 | MtrunA17_Chr1g0188071 | 33.441 | 311 | 186 | 7 | 44 | 343 | 41 | 341 | 2.12e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731990 | AT4G08950.1 | 71.812 | 298 | 76 | 5 | 54 | 346 | 20 | 314 | 1.27e-148 | 421 |
| Msa0731990 | AT1G35140.1 | 64.762 | 315 | 104 | 3 | 31 | 345 | 1 | 308 | 8.13e-143 | 407 |
| Msa0731990 | AT5G64260.1 | 57.190 | 306 | 121 | 4 | 42 | 346 | 9 | 305 | 6.41e-119 | 346 |
| Msa0731990 | AT5G09440.1 | 55.150 | 301 | 101 | 7 | 48 | 346 | 10 | 278 | 6.90e-101 | 299 |
| Msa0731990 | AT5G51550.1 | 35.410 | 305 | 175 | 8 | 50 | 343 | 38 | 331 | 1.01e-49 | 169 |
| Msa0731990 | AT3G02970.1 | 31.104 | 299 | 170 | 7 | 77 | 344 | 37 | 330 | 5.32e-44 | 154 |
| Msa0731990 | AT2G17230.1 | 32.237 | 304 | 184 | 9 | 52 | 343 | 64 | 357 | 1.02e-41 | 149 |
| Msa0731990 | AT2G35150.1 | 33.846 | 325 | 188 | 11 | 36 | 342 | 1 | 316 | 1.74e-41 | 147 |
Find 78 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_1:+43824207 | Msa0731990:CDS |
| TTGATGCGAGTTTAAGAATT+TGG | 0.184159 | 5_1:-43823996 | None:intergenic |
| TCTTATGGTGCACGTGTAAA+TGG | 0.207934 | 5_1:+43824114 | Msa0731990:CDS |
| CTTGATGAGAATTACTCTTT+AGG | 0.255316 | 5_1:+43823955 | Msa0731990:CDS |
| AGAACAAAGTATGAAGTAAA+AGG | 0.265458 | 5_1:-43823559 | None:intergenic |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_1:+43824099 | Msa0731990:CDS |
| AATCAGTTATGATGGCTCTT+TGG | 0.297339 | 5_1:-43823786 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_1:-43824219 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_1:-43824354 | None:intergenic |
| GAAACAAGTTCGCATACATT+TGG | 0.312643 | 5_1:+43824142 | Msa0731990:CDS |
| TAACTTAAAAGATGCCATTT+GGG | 0.315365 | 5_1:-43823596 | None:intergenic |
| GTAGTGAAATTGTGAGAAAA+AGG | 0.348381 | 5_1:-43823633 | None:intergenic |
| TTAACTTAAAAGATGCCATT+TGG | 0.352474 | 5_1:-43823597 | None:intergenic |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_1:+43824362 | Msa0731990:CDS |
| ATCAGTTATGATGGCTCTTT+GGG | 0.364014 | 5_1:-43823785 | None:intergenic |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_1:+43824350 | Msa0731990:CDS |
| AACAACGATGTGGGTCTTGA+TGG | 0.378380 | 5_1:+43824258 | Msa0731990:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_1:-43824207 | None:intergenic |
| AAATCTCAATCAACCTCATT+TGG | 0.382865 | 5_1:+43823743 | Msa0731990:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5_1:+43824465 | Msa0731990:CDS |
| AAACAAGTTCGCATACATTT+GGG | 0.395889 | 5_1:+43824143 | Msa0731990:CDS |
| TTATGCTGGGGACCTTCTAA+TGG | 0.405237 | 5_1:+43824422 | Msa0731990:CDS |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.407467 | 5_1:-43823717 | None:intergenic |
| GGAACTGTAACCAATCCTTT+TGG | 0.416728 | 5_1:+43824312 | Msa0731990:CDS |
| TCAAGACCCACATCGTTGTT+TGG | 0.417862 | 5_1:-43824255 | None:intergenic |
| AGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5_1:+43824408 | Msa0731990:CDS |
| GAAATGTAAGATGGGGTTGT+AGG | 0.436612 | 5_1:-43823514 | None:intergenic |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_1:-43823696 | None:intergenic |
| CTAACACATCAGCAGCTGTT+AGG | 0.451358 | 5_1:-43824050 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5_1:-43824231 | None:intergenic |
| TGAAAATACCCATTACCAAA+AGG | 0.468413 | 5_1:-43824327 | None:intergenic |
| GAAGCTGCTTCGGCTTGTAC+CGG | 0.475241 | 5_1:+43824372 | Msa0731990:CDS |
| ATTCTTAAACTCGCATCAAA+AGG | 0.483182 | 5_1:+43824000 | Msa0731990:CDS |
| AGCTGTTAGGACAACGTTGA+TGG | 0.491013 | 5_1:-43824037 | None:intergenic |
| TCAATCAACCTCATTTGGTA+TGG | 0.491730 | 5_1:+43823748 | Msa0731990:CDS |
| AGCTAGAAAACTCACTGAAT+CGG | 0.492474 | 5_1:+43823672 | Msa0731990:CDS |
| GAGTACCTAGTGAGAGAGCT+AGG | 0.494212 | 5_1:-43823927 | None:intergenic |
| ATCTCAATACATACCCCAAA+TGG | 0.500069 | 5_1:+43823582 | Msa0731990:CDS |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_1:+43824227 | Msa0731990:CDS |
| ATACCCATTACCAAAAGGAT+TGG | 0.507737 | 5_1:-43824322 | None:intergenic |
| GTGAGATGGAAATGTAAGAT+GGG | 0.507795 | 5_1:-43823522 | None:intergenic |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.512705 | 5_1:+43824057 | Msa0731990:CDS |
| GTTATGATGGCTCTTTGGGA+TGG | 0.520405 | 5_1:-43823781 | None:intergenic |
| GGTTATGAAATCAGTTATGA+TGG | 0.523193 | 5_1:-43823794 | None:intergenic |
| TATGCTAAAAGAGCTTATCC+TGG | 0.526119 | 5_1:+43824399 | Msa0731990:CDS |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5_1:+43824409 | Msa0731990:CDS |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5_1:+43824456 | Msa0731990:CDS |
| ATTTCTTGTTGCTAGTGAGT+TGG | 0.535082 | 5_1:-43823897 | None:intergenic |
| CACAAAGGCCCTCTTCTCAC+TGG | 0.545259 | 5_1:+43823718 | Msa0731990:CDS |
| AACGTCAGCTTGTTCTACAT+TGG | 0.554070 | 5_1:+43824524 | Msa0731990:CDS |
| AAGTTCGCATACATTTGGGT+TGG | 0.555170 | 5_1:+43824147 | Msa0731990:CDS |
| AGTATGAAGTAAAAGGAATG+TGG | 0.559358 | 5_1:-43823552 | None:intergenic |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_1:+43824469 | Msa0731990:CDS |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5_1:+43824087 | Msa0731990:CDS |
| GTTAACCTAGCTCTCTCACT+AGG | 0.568709 | 5_1:+43823922 | Msa0731990:CDS |
| TGTGAGATGGAAATGTAAGA+TGG | 0.568894 | 5_1:-43823523 | None:intergenic |
| CGATGTGGGTCTTGATGGAA+TGG | 0.570225 | 5_1:+43824263 | Msa0731990:CDS |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_1:-43823856 | None:intergenic |
| AGAAGGTCCCCAGCATAACC+AGG | 0.582939 | 5_1:-43824417 | None:intergenic |
| TCGTTGTTTGGTGCAACCAA+TGG | 0.597767 | 5_1:-43824243 | None:intergenic |
| AATTCTGAAACTCAATGTGT+TGG | 0.598060 | 5_1:+43824171 | Msa0731990:CDS |
| AACTTAAAAGATGCCATTTG+GGG | 0.601368 | 5_1:-43823595 | None:intergenic |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_1:+43823854 | Msa0731990:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_1:-43824215 | None:intergenic |
| AATGTGGAAATGTTGTGAGA+TGG | 0.618869 | 5_1:-43823536 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_1:+43823703 | Msa0731990:CDS |
| GGTTGCACCAAACAACGATG+TGG | 0.632095 | 5_1:+43824248 | Msa0731990:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.635354 | 5_1:-43824104 | None:intergenic |
| AGCTTATCCTGGTTATGCTG+GGG | 0.635836 | 5_1:+43824410 | Msa0731990:CDS |
| CTTCTAATGGACAAAACAAG+TGG | 0.641232 | 5_1:+43824435 | Msa0731990:CDS |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5_1:-43823866 | None:intergenic |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.645366 | 5_1:-43824366 | None:intergenic |
| GTTGCACCAAACAACGATGT+GGG | 0.648870 | 5_1:+43824249 | Msa0731990:CDS |
| TGCACCATAAGAAGAACCAT+GGG | 0.667974 | 5_1:-43824103 | None:intergenic |
| AATGTGTTGGTCAATGCGCA+TGG | 0.680631 | 5_1:+43824184 | Msa0731990:CDS |
| GGCAACTGATGGTTGTGATG+TGG | 0.681525 | 5_1:-43823845 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_1:+43823851 | Msa0731990:CDS |
| TGAGATGGAAATGTAAGATG+GGG | 0.703179 | 5_1:-43823521 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAACAAAGTATGAAGTAAA+AGG | - | chr5_1:43823562-43823581 | None:intergenic | 25.0% |
| !! | TAACTTAAAAGATGCCATTT+GGG | - | chr5_1:43823599-43823618 | None:intergenic | 25.0% |
| ! | TTAACTTAAAAGATGCCATT+TGG | - | chr5_1:43823600-43823619 | None:intergenic | 25.0% |
| ! | TAGTGAAATTGTGAGAAAAA+GGG | - | chr5_1:43823635-43823654 | None:intergenic | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43823699-43823718 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43823703-43823722 | Msa0731990:CDS | 25.0% |
| !!! | TTGTTTTTTGGAAGAAGAAA+GGG | - | chr5_1:43823821-43823840 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGGAAGAAGAA+AGG | - | chr5_1:43823822-43823841 | None:intergenic | 25.0% |
| ! | AGAACAAAGTATGAAGTAAA+AGG | - | chr5_1:43823562-43823581 | None:intergenic | 25.0% |
| !! | TAACTTAAAAGATGCCATTT+GGG | - | chr5_1:43823599-43823618 | None:intergenic | 25.0% |
| ! | TTAACTTAAAAGATGCCATT+TGG | - | chr5_1:43823600-43823619 | None:intergenic | 25.0% |
| ! | TAGTGAAATTGTGAGAAAAA+GGG | - | chr5_1:43823635-43823654 | None:intergenic | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43823699-43823718 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43823703-43823722 | Msa0731990:CDS | 25.0% |
| !!! | TTGTTTTTTGGAAGAAGAAA+GGG | - | chr5_1:43823821-43823840 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGGAAGAAGAA+AGG | - | chr5_1:43823822-43823841 | None:intergenic | 25.0% |
| AGTATGAAGTAAAAGGAATG+TGG | - | chr5_1:43823555-43823574 | None:intergenic | 30.0% | |
| ! | AACTTAAAAGATGCCATTTG+GGG | - | chr5_1:43823598-43823617 | None:intergenic | 30.0% |
| GTAGTGAAATTGTGAGAAAA+AGG | - | chr5_1:43823636-43823655 | None:intergenic | 30.0% | |
| AAATCTCAATCAACCTCATT+TGG | + | chr5_1:43823743-43823762 | Msa0731990:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43823759-43823778 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43823797-43823816 | None:intergenic | 30.0% | |
| !!! | TGATGTGGCTATTTGTTTTT+TGG | - | chr5_1:43823833-43823852 | None:intergenic | 30.0% |
| CTTGATGAGAATTACTCTTT+AGG | + | chr5_1:43823955-43823974 | Msa0731990:CDS | 30.0% | |
| TTGATGCGAGTTTAAGAATT+TGG | - | chr5_1:43823999-43824018 | None:intergenic | 30.0% | |
| ATTCTTAAACTCGCATCAAA+AGG | + | chr5_1:43824000-43824019 | Msa0731990:CDS | 30.0% | |
| AAACAAGTTCGCATACATTT+GGG | + | chr5_1:43824143-43824162 | Msa0731990:CDS | 30.0% | |
| !! | AATTCTGAAACTCAATGTGT+TGG | + | chr5_1:43824171-43824190 | Msa0731990:CDS | 30.0% |
| !! | TAACCAATCCTTTTGGTAAT+GGG | + | chr5_1:43824319-43824338 | Msa0731990:CDS | 30.0% |
| TGAAAATACCCATTACCAAA+AGG | - | chr5_1:43824330-43824349 | None:intergenic | 30.0% | |
| !!! | TTTGGTAATGGGTATTTTCA+AGG | + | chr5_1:43824330-43824349 | Msa0731990:CDS | 30.0% |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_1:43824465-43824484 | Msa0731990:CDS | 30.0% | |
| AGTATGAAGTAAAAGGAATG+TGG | - | chr5_1:43823555-43823574 | None:intergenic | 30.0% | |
| ! | AACTTAAAAGATGCCATTTG+GGG | - | chr5_1:43823598-43823617 | None:intergenic | 30.0% |
| GTAGTGAAATTGTGAGAAAA+AGG | - | chr5_1:43823636-43823655 | None:intergenic | 30.0% | |
| AAATCTCAATCAACCTCATT+TGG | + | chr5_1:43823743-43823762 | Msa0731990:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43823759-43823778 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43823797-43823816 | None:intergenic | 30.0% | |
| !!! | TGATGTGGCTATTTGTTTTT+TGG | - | chr5_1:43823833-43823852 | None:intergenic | 30.0% |
| CTTGATGAGAATTACTCTTT+AGG | + | chr5_1:43823955-43823974 | Msa0731990:CDS | 30.0% | |
| TTGATGCGAGTTTAAGAATT+TGG | - | chr5_1:43823999-43824018 | None:intergenic | 30.0% | |
| ATTCTTAAACTCGCATCAAA+AGG | + | chr5_1:43824000-43824019 | Msa0731990:CDS | 30.0% | |
| AAACAAGTTCGCATACATTT+GGG | + | chr5_1:43824143-43824162 | Msa0731990:CDS | 30.0% | |
| !! | AATTCTGAAACTCAATGTGT+TGG | + | chr5_1:43824171-43824190 | Msa0731990:CDS | 30.0% |
| !! | TAACCAATCCTTTTGGTAAT+GGG | + | chr5_1:43824319-43824338 | Msa0731990:CDS | 30.0% |
| TGAAAATACCCATTACCAAA+AGG | - | chr5_1:43824330-43824349 | None:intergenic | 30.0% | |
| !!! | TTTGGTAATGGGTATTTTCA+AGG | + | chr5_1:43824330-43824349 | Msa0731990:CDS | 30.0% |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_1:43824465-43824484 | Msa0731990:CDS | 30.0% | |
| TGAGATGGAAATGTAAGATG+GGG | - | chr5_1:43823524-43823543 | None:intergenic | 35.0% | |
| GTGAGATGGAAATGTAAGAT+GGG | - | chr5_1:43823525-43823544 | None:intergenic | 35.0% | |
| TGTGAGATGGAAATGTAAGA+TGG | - | chr5_1:43823526-43823545 | None:intergenic | 35.0% | |
| AATGTGGAAATGTTGTGAGA+TGG | - | chr5_1:43823539-43823558 | None:intergenic | 35.0% | |
| ATCTCAATACATACCCCAAA+TGG | + | chr5_1:43823582-43823601 | Msa0731990:CDS | 35.0% | |
| TGAAATTGTGAGAAAAAGGG+TGG | - | chr5_1:43823632-43823651 | None:intergenic | 35.0% | |
| AGCTAGAAAACTCACTGAAT+CGG | + | chr5_1:43823672-43823691 | Msa0731990:CDS | 35.0% | |
| ! | AGATTTTACCAGTGAGAAGA+GGG | - | chr5_1:43823729-43823748 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_1:43823748-43823767 | Msa0731990:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_1:43823788-43823807 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_1:43823789-43823808 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGAAGAAGAAAGGG+AGG | - | chr5_1:43823818-43823837 | None:intergenic | 35.0% |
| ATTTCTTGTTGCTAGTGAGT+TGG | - | chr5_1:43823900-43823919 | None:intergenic | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_1:43824073-43824092 | Msa0731990:CDS | 35.0% |
| GAAACAAGTTCGCATACATT+TGG | + | chr5_1:43824142-43824161 | Msa0731990:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43824210-43824229 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43824207-43824226 | Msa0731990:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43824218-43824237 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_1:43824291-43824310 | Msa0731990:CDS | 35.0% |
| ! | GTAACCAATCCTTTTGGTAA+TGG | + | chr5_1:43824318-43824337 | Msa0731990:CDS | 35.0% |
| ATACCCATTACCAAAAGGAT+TGG | - | chr5_1:43824325-43824344 | None:intergenic | 35.0% | |
| ! | AGCTCTTTTAGCATAAACAC+CGG | - | chr5_1:43824394-43824413 | None:intergenic | 35.0% |
| TATGCTAAAAGAGCTTATCC+TGG | + | chr5_1:43824399-43824418 | Msa0731990:CDS | 35.0% | |
| !!! | CACTTGTTTTGTCCATTAGA+AGG | - | chr5_1:43824437-43824456 | None:intergenic | 35.0% |
| ! | CTTCTAATGGACAAAACAAG+TGG | + | chr5_1:43824435-43824454 | Msa0731990:CDS | 35.0% |
| TGAGATGGAAATGTAAGATG+GGG | - | chr5_1:43823524-43823543 | None:intergenic | 35.0% | |
| GTGAGATGGAAATGTAAGAT+GGG | - | chr5_1:43823525-43823544 | None:intergenic | 35.0% | |
| TGTGAGATGGAAATGTAAGA+TGG | - | chr5_1:43823526-43823545 | None:intergenic | 35.0% | |
| AATGTGGAAATGTTGTGAGA+TGG | - | chr5_1:43823539-43823558 | None:intergenic | 35.0% | |
| ATCTCAATACATACCCCAAA+TGG | + | chr5_1:43823582-43823601 | Msa0731990:CDS | 35.0% | |
| TGAAATTGTGAGAAAAAGGG+TGG | - | chr5_1:43823632-43823651 | None:intergenic | 35.0% | |
| AGCTAGAAAACTCACTGAAT+CGG | + | chr5_1:43823672-43823691 | Msa0731990:CDS | 35.0% | |
| ! | AGATTTTACCAGTGAGAAGA+GGG | - | chr5_1:43823729-43823748 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_1:43823748-43823767 | Msa0731990:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_1:43823788-43823807 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_1:43823789-43823808 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGAAGAAGAAAGGG+AGG | - | chr5_1:43823818-43823837 | None:intergenic | 35.0% |
| ATTTCTTGTTGCTAGTGAGT+TGG | - | chr5_1:43823900-43823919 | None:intergenic | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_1:43824073-43824092 | Msa0731990:CDS | 35.0% |
| GAAACAAGTTCGCATACATT+TGG | + | chr5_1:43824142-43824161 | Msa0731990:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43824210-43824229 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43824207-43824226 | Msa0731990:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43824218-43824237 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_1:43824291-43824310 | Msa0731990:CDS | 35.0% |
| ! | GTAACCAATCCTTTTGGTAA+TGG | + | chr5_1:43824318-43824337 | Msa0731990:CDS | 35.0% |
| ATACCCATTACCAAAAGGAT+TGG | - | chr5_1:43824325-43824344 | None:intergenic | 35.0% | |
| ! | AGCTCTTTTAGCATAAACAC+CGG | - | chr5_1:43824394-43824413 | None:intergenic | 35.0% |
| TATGCTAAAAGAGCTTATCC+TGG | + | chr5_1:43824399-43824418 | Msa0731990:CDS | 35.0% | |
| !!! | CACTTGTTTTGTCCATTAGA+AGG | - | chr5_1:43824437-43824456 | None:intergenic | 35.0% |
| ! | CTTCTAATGGACAAAACAAG+TGG | + | chr5_1:43824435-43824454 | Msa0731990:CDS | 35.0% |
| GAAATGTAAGATGGGGTTGT+AGG | - | chr5_1:43823517-43823536 | None:intergenic | 40.0% | |
| ! | GAGATTTTACCAGTGAGAAG+AGG | - | chr5_1:43823730-43823749 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43824078-43824097 | Msa0731990:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_1:43824106-43824125 | None:intergenic | 40.0% | |
| TCTTATGGTGCACGTGTAAA+TGG | + | chr5_1:43824114-43824133 | Msa0731990:CDS | 40.0% | |
| AAGTTCGCATACATTTGGGT+TGG | + | chr5_1:43824147-43824166 | Msa0731990:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43824222-43824241 | None:intergenic | 40.0% | |
| ! | GGAACTGTAACCAATCCTTT+TGG | + | chr5_1:43824312-43824331 | Msa0731990:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_1:43824469-43824488 | Msa0731990:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_1:43824507-43824526 | None:intergenic | 40.0% |
| ! | GTAGAACAAGCTGACGTTTT+AGG | - | chr5_1:43824522-43824541 | None:intergenic | 40.0% |
| ! | AACGTCAGCTTGTTCTACAT+TGG | + | chr5_1:43824524-43824543 | Msa0731990:CDS | 40.0% |
| GAAATGTAAGATGGGGTTGT+AGG | - | chr5_1:43823517-43823536 | None:intergenic | 40.0% | |
| ! | GAGATTTTACCAGTGAGAAG+AGG | - | chr5_1:43823730-43823749 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43824078-43824097 | Msa0731990:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_1:43824106-43824125 | None:intergenic | 40.0% | |
| TCTTATGGTGCACGTGTAAA+TGG | + | chr5_1:43824114-43824133 | Msa0731990:CDS | 40.0% | |
| AAGTTCGCATACATTTGGGT+TGG | + | chr5_1:43824147-43824166 | Msa0731990:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43824222-43824241 | None:intergenic | 40.0% | |
| ! | GGAACTGTAACCAATCCTTT+TGG | + | chr5_1:43824312-43824331 | Msa0731990:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_1:43824469-43824488 | Msa0731990:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_1:43824507-43824526 | None:intergenic | 40.0% |
| ! | GTAGAACAAGCTGACGTTTT+AGG | - | chr5_1:43824522-43824541 | None:intergenic | 40.0% |
| ! | AACGTCAGCTTGTTCTACAT+TGG | + | chr5_1:43824524-43824543 | Msa0731990:CDS | 40.0% |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_1:43823784-43823803 | None:intergenic | 45.0% |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_1:43823869-43823888 | None:intergenic | 45.0% |
| ! | GTTAACCTAGCTCTCTCACT+AGG | + | chr5_1:43823922-43823941 | Msa0731990:CDS | 45.0% |
| AGCTGTTAGGACAACGTTGA+TGG | - | chr5_1:43824040-43824059 | None:intergenic | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | chr5_1:43824053-43824072 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43824057-43824076 | Msa0731990:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_1:43824099-43824118 | Msa0731990:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_1:43824107-43824126 | None:intergenic | 45.0% | |
| ! | AATGTGTTGGTCAATGCGCA+TGG | + | chr5_1:43824184-43824203 | Msa0731990:CDS | 45.0% |
| !! | TCGTTGTTTGGTGCAACCAA+TGG | - | chr5_1:43824246-43824265 | None:intergenic | 45.0% |
| GTTGCACCAAACAACGATGT+GGG | + | chr5_1:43824249-43824268 | Msa0731990:CDS | 45.0% | |
| TCAAGACCCACATCGTTGTT+TGG | - | chr5_1:43824258-43824277 | None:intergenic | 45.0% | |
| AACAACGATGTGGGTCTTGA+TGG | + | chr5_1:43824258-43824277 | Msa0731990:CDS | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43824350-43824369 | Msa0731990:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43824357-43824376 | None:intergenic | 45.0% |
| AGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43824408-43824427 | Msa0731990:CDS | 45.0% | |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43824409-43824428 | Msa0731990:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43824410-43824429 | Msa0731990:CDS | 45.0% | |
| TTATGCTGGGGACCTTCTAA+TGG | + | chr5_1:43824422-43824441 | Msa0731990:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_1:43824456-43824475 | Msa0731990:CDS | 45.0% | |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_1:43823784-43823803 | None:intergenic | 45.0% |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_1:43823869-43823888 | None:intergenic | 45.0% |
| ! | GTTAACCTAGCTCTCTCACT+AGG | + | chr5_1:43823922-43823941 | Msa0731990:CDS | 45.0% |
| AGCTGTTAGGACAACGTTGA+TGG | - | chr5_1:43824040-43824059 | None:intergenic | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | chr5_1:43824053-43824072 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43824057-43824076 | Msa0731990:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_1:43824099-43824118 | Msa0731990:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_1:43824107-43824126 | None:intergenic | 45.0% | |
| ! | AATGTGTTGGTCAATGCGCA+TGG | + | chr5_1:43824184-43824203 | Msa0731990:CDS | 45.0% |
| !! | TCGTTGTTTGGTGCAACCAA+TGG | - | chr5_1:43824246-43824265 | None:intergenic | 45.0% |
| GTTGCACCAAACAACGATGT+GGG | + | chr5_1:43824249-43824268 | Msa0731990:CDS | 45.0% | |
| TCAAGACCCACATCGTTGTT+TGG | - | chr5_1:43824258-43824277 | None:intergenic | 45.0% | |
| AACAACGATGTGGGTCTTGA+TGG | + | chr5_1:43824258-43824277 | Msa0731990:CDS | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43824350-43824369 | Msa0731990:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43824357-43824376 | None:intergenic | 45.0% |
| AGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43824408-43824427 | Msa0731990:CDS | 45.0% | |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43824409-43824428 | Msa0731990:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43824410-43824429 | Msa0731990:CDS | 45.0% | |
| TTATGCTGGGGACCTTCTAA+TGG | + | chr5_1:43824422-43824441 | Msa0731990:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_1:43824456-43824475 | Msa0731990:CDS | 45.0% | |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_1:43823848-43823867 | None:intergenic | 50.0% | |
| GAGTACCTAGTGAGAGAGCT+AGG | - | chr5_1:43823930-43823949 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_1:43824087-43824106 | Msa0731990:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_1:43824227-43824246 | Msa0731990:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_1:43824234-43824253 | None:intergenic | 50.0% | |
| GGTTGCACCAAACAACGATG+TGG | + | chr5_1:43824248-43824267 | Msa0731990:CDS | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_1:43824263-43824282 | Msa0731990:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43824362-43824381 | Msa0731990:CDS | 50.0% |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_1:43823848-43823867 | None:intergenic | 50.0% | |
| GAGTACCTAGTGAGAGAGCT+AGG | - | chr5_1:43823930-43823949 | None:intergenic | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_1:43824087-43824106 | Msa0731990:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_1:43824227-43824246 | Msa0731990:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_1:43824234-43824253 | None:intergenic | 50.0% | |
| GGTTGCACCAAACAACGATG+TGG | + | chr5_1:43824248-43824267 | Msa0731990:CDS | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_1:43824263-43824282 | Msa0731990:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43824362-43824381 | Msa0731990:CDS | 50.0% |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43823720-43823739 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | + | chr5_1:43823718-43823737 | Msa0731990:CDS | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_1:43823851-43823870 | Msa0731990:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_1:43823854-43823873 | Msa0731990:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_1:43823859-43823878 | None:intergenic | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43824369-43824388 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43824372-43824391 | Msa0731990:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | - | chr5_1:43824420-43824439 | None:intergenic | 55.0% | |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43823720-43823739 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | + | chr5_1:43823718-43823737 | Msa0731990:CDS | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_1:43823851-43823870 | Msa0731990:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_1:43823854-43823873 | Msa0731990:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_1:43823859-43823878 | None:intergenic | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43824369-43824388 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43824372-43824391 | Msa0731990:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | - | chr5_1:43824420-43824439 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43823511 | 43824551 | 43823511 | ID=Msa0731990;Name=Msa0731990 |
| chr5_1 | mRNA | 43823511 | 43824551 | 43823511 | ID=Msa0731990-mRNA-1;Parent=Msa0731990;Name=Msa0731990-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|346 |
| chr5_1 | exon | 43823511 | 43824551 | 43823511 | ID=Msa0731990-mRNA-1:exon:12471;Parent=Msa0731990-mRNA-1 |
| chr5_1 | CDS | 43823511 | 43824551 | 43823511 | ID=Msa0731990-mRNA-1:cds;Parent=Msa0731990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
