Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511880 | XP_004501981.1 | 87.661 | 389 | 48 | 0 | 4 | 392 | 2 | 390 | 0.0 | 708 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511880 | sp|Q9FH04|ADHL7_ARATH | 70.400 | 375 | 110 | 1 | 17 | 390 | 15 | 389 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511880 | A0A1S2YAL7 | 87.661 | 389 | 48 | 0 | 4 | 392 | 2 | 390 | 0.0 | 708 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0511880 | Msa0574890 | 0.801927 | 7.145954e-49 | -8.615850e-47 |
| Msa0511880 | Msa0741240 | 0.800788 | 1.222593e-48 | -8.615850e-47 |
| Msa0511880 | Msa0861870 | 0.809742 | 1.628215e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511880 | MtrunA17_Chr3g0118441 | 81.558 | 385 | 70 | 1 | 8 | 392 | 3 | 386 | 0.0 | 660 |
| Msa0511880 | MtrunA17_Chr5g0440521 | 78.442 | 385 | 81 | 1 | 8 | 392 | 9 | 391 | 0.0 | 627 |
| Msa0511880 | MtrunA17_Chr3g0118431 | 95.572 | 271 | 12 | 0 | 112 | 382 | 20 | 290 | 0.0 | 540 |
| Msa0511880 | MtrunA17_Chr3g0132351 | 59.631 | 379 | 149 | 3 | 16 | 391 | 13 | 390 | 5.62e-159 | 452 |
| Msa0511880 | MtrunA17_Chr1g0183131 | 50.532 | 376 | 184 | 2 | 15 | 390 | 4 | 377 | 2.55e-133 | 387 |
| Msa0511880 | MtrunA17_Chr7g0262421 | 50.000 | 380 | 176 | 4 | 15 | 388 | 6 | 377 | 8.36e-129 | 375 |
| Msa0511880 | MtrunA17_Chr6g0478081 | 48.670 | 376 | 187 | 4 | 17 | 392 | 8 | 377 | 9.08e-122 | 357 |
| Msa0511880 | MtrunA17_Chr3g0125911 | 45.093 | 377 | 205 | 2 | 16 | 392 | 6 | 380 | 5.52e-115 | 340 |
| Msa0511880 | MtrunA17_Chr3g0125961 | 44.533 | 375 | 206 | 2 | 16 | 390 | 6 | 378 | 1.36e-113 | 336 |
| Msa0511880 | MtrunA17_Chr3g0125941 | 44.828 | 377 | 206 | 2 | 16 | 392 | 7 | 381 | 1.69e-113 | 336 |
| Msa0511880 | MtrunA17_Chr7g0242291 | 46.094 | 384 | 201 | 5 | 11 | 390 | 12 | 393 | 3.66e-111 | 331 |
| Msa0511880 | MtrunA17_Chr4g0021211 | 41.099 | 382 | 217 | 5 | 10 | 390 | 24 | 398 | 5.39e-99 | 300 |
| Msa0511880 | MtrunA17_Chr5g0419681 | 41.600 | 375 | 212 | 6 | 17 | 390 | 6 | 374 | 5.26e-97 | 294 |
| Msa0511880 | MtrunA17_Chr7g0242301 | 42.618 | 359 | 169 | 5 | 35 | 390 | 1 | 325 | 1.79e-87 | 268 |
| Msa0511880 | MtrunA17_Chr8g0385221 | 30.829 | 386 | 248 | 13 | 13 | 388 | 46 | 422 | 5.25e-36 | 136 |
| Msa0511880 | MtrunA17_Chr6g0474141 | 23.837 | 344 | 225 | 9 | 45 | 381 | 39 | 352 | 2.24e-19 | 88.6 |
| Msa0511880 | MtrunA17_Chr5g0411871 | 26.765 | 340 | 191 | 14 | 17 | 339 | 24 | 322 | 9.89e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511880 | AT5G42250.1 | 70.400 | 375 | 110 | 1 | 17 | 390 | 15 | 389 | 0.0 | 572 |
| Msa0511880 | AT1G22430.2 | 59.845 | 386 | 152 | 3 | 9 | 392 | 4 | 388 | 1.04e-166 | 472 |
| Msa0511880 | AT1G22430.1 | 59.845 | 386 | 152 | 3 | 9 | 392 | 4 | 388 | 1.04e-166 | 472 |
| Msa0511880 | AT4G22110.2 | 61.053 | 380 | 145 | 3 | 15 | 392 | 11 | 389 | 1.49e-165 | 469 |
| Msa0511880 | AT4G22110.1 | 61.053 | 380 | 145 | 3 | 15 | 392 | 11 | 389 | 1.49e-165 | 469 |
| Msa0511880 | AT1G22440.1 | 60.000 | 380 | 149 | 3 | 15 | 392 | 8 | 386 | 7.79e-162 | 459 |
| Msa0511880 | AT5G43940.1 | 51.070 | 374 | 181 | 2 | 15 | 388 | 4 | 375 | 1.24e-135 | 393 |
| Msa0511880 | AT5G43940.2 | 49.223 | 386 | 182 | 3 | 15 | 388 | 4 | 387 | 1.92e-131 | 382 |
| Msa0511880 | AT1G22430.3 | 61.301 | 292 | 111 | 2 | 9 | 298 | 4 | 295 | 1.51e-126 | 367 |
| Msa0511880 | AT5G24760.1 | 48.312 | 385 | 193 | 4 | 8 | 392 | 3 | 381 | 1.57e-124 | 365 |
| Msa0511880 | AT1G64710.1 | 46.982 | 381 | 193 | 6 | 15 | 390 | 4 | 380 | 1.60e-118 | 349 |
| Msa0511880 | AT1G77120.1 | 46.809 | 376 | 196 | 4 | 16 | 390 | 5 | 377 | 1.35e-117 | 347 |
| Msa0511880 | AT5G24760.2 | 48.324 | 358 | 179 | 4 | 35 | 392 | 1 | 352 | 3.22e-116 | 342 |
| Msa0511880 | AT5G24760.3 | 48.324 | 358 | 179 | 4 | 35 | 392 | 1 | 352 | 3.22e-116 | 342 |
| Msa0511880 | AT1G32780.1 | 47.692 | 390 | 188 | 7 | 15 | 392 | 5 | 390 | 1.23e-113 | 337 |
| Msa0511880 | AT1G22430.4 | 59.925 | 267 | 105 | 2 | 9 | 273 | 4 | 270 | 1.29e-111 | 328 |
| Msa0511880 | AT1G22430.5 | 59.925 | 267 | 105 | 2 | 9 | 273 | 4 | 270 | 1.29e-111 | 328 |
| Msa0511880 | AT4G22110.3 | 62.891 | 256 | 93 | 2 | 15 | 268 | 11 | 266 | 4.46e-110 | 324 |
| Msa0511880 | AT1G64710.2 | 45.983 | 361 | 186 | 6 | 35 | 390 | 1 | 357 | 5.67e-110 | 327 |
| Msa0511880 | AT1G64710.3 | 45.161 | 310 | 162 | 5 | 85 | 390 | 6 | 311 | 4.54e-91 | 277 |
| Msa0511880 | AT5G24760.4 | 50.988 | 253 | 121 | 3 | 140 | 392 | 18 | 267 | 4.90e-83 | 254 |
| Msa0511880 | AT5G63620.1 | 26.902 | 368 | 255 | 8 | 22 | 382 | 57 | 417 | 1.65e-33 | 130 |
| Msa0511880 | AT5G63620.2 | 26.902 | 368 | 255 | 8 | 22 | 382 | 57 | 417 | 3.20e-33 | 129 |
| Msa0511880 | AT5G63620.3 | 28.279 | 244 | 168 | 3 | 22 | 259 | 57 | 299 | 1.25e-24 | 103 |
Find 102 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCATGAGTTGGAGTTTA+AGG | 0.153657 | 3_4:+61570864 | Msa0511880:CDS |
| GGGTCAACAGTTGCTATATT+TGG | 0.187036 | 3_4:+61569308 | Msa0511880:CDS |
| TCACAATCTGGTAGGAAAAT+TGG | 0.217622 | 3_4:-61568819 | None:intergenic |
| TGGATCAATCTTTAGTATAT+TGG | 0.221334 | 3_4:-61569015 | None:intergenic |
| TGTGGAGCAACTAGGATTAT+TGG | 0.249725 | 3_4:+61569472 | Msa0511880:CDS |
| TCTCCTTGGTTGCCTAGATA+TGG | 0.266835 | 3_4:+61568903 | Msa0511880:CDS |
| TAGAATTGGTACATGAGATT+TGG | 0.269904 | 3_4:-61570657 | None:intergenic |
| GCCTCATGACCCAAAATTCT+TGG | 0.277018 | 3_4:-61566814 | None:intergenic |
| CCTGATAGGGCATGCCTTCT+CGG | 0.286291 | 3_4:+61569047 | Msa0511880:CDS |
| AATCAAGTCACTATCCAAAA+AGG | 0.291986 | 3_4:-61570984 | None:intergenic |
| AGAATTGGTACATGAGATTT+GGG | 0.318239 | 3_4:-61570656 | None:intergenic |
| ATTTAATCAGGAAAGAAGTT+TGG | 0.318718 | 3_4:+61569919 | Msa0511880:intron |
| CATTCTTATGTAATACTATA+TGG | 0.326673 | 3_4:+61570961 | Msa0511880:three_prime_UTR |
| AGCAGACCTTTGCATCTTAT+AGG | 0.331773 | 3_4:-61566362 | None:intergenic |
| CATGATGGGAAGAGCCTTAT+GGG | 0.333914 | 3_4:+61570611 | Msa0511880:CDS |
| TCATGATGGGAAGAGCCTTA+TGG | 0.347711 | 3_4:+61570610 | Msa0511880:CDS |
| GGTCAACAGTTGCTATATTT+GGG | 0.357976 | 3_4:+61569309 | Msa0511880:CDS |
| CCGAGAAGGCATGCCCTATC+AGG | 0.364452 | 3_4:-61569047 | None:intergenic |
| CTCCTTGGTTGCCTAGATAT+GGG | 0.369273 | 3_4:+61568904 | Msa0511880:CDS |
| CGAACTTCACGAGGCATTGT+TGG | 0.387395 | 3_4:-61566587 | None:intergenic |
| GAACTTCACGAGGCATTGTT+GGG | 0.394236 | 3_4:-61566586 | None:intergenic |
| TTAACTGCAGGAACTGCAAT+TGG | 0.396378 | 3_4:+61570831 | Msa0511880:intron |
| AGTGTCTTCGATGTGTGATT+TGG | 0.403564 | 3_4:+61570923 | Msa0511880:CDS |
| CTCGGTTGTGGTGTATCAAC+AGG | 0.403823 | 3_4:+61569065 | Msa0511880:CDS |
| GGACTCACAGACTTTGTTCA+TGG | 0.411553 | 3_4:+61569940 | Msa0511880:CDS |
| AATTCTACTTAAACGTTACA+TGG | 0.412714 | 3_4:+61570673 | Msa0511880:CDS |
| ACAGTTGCTATATTTGGGCT+TGG | 0.416309 | 3_4:+61569314 | Msa0511880:CDS |
| GCCACAGTGATATCACTCTT+TGG | 0.417250 | 3_4:+61566636 | Msa0511880:CDS |
| GCAGAGGGAGCTAGACTTTG+TGG | 0.419195 | 3_4:+61569454 | Msa0511880:CDS |
| ATATTTGGGCTTGGATCTGT+TGG | 0.433569 | 3_4:+61569323 | Msa0511880:CDS |
| ATGTAACGTTTAAGTAGAAT+TGG | 0.436021 | 3_4:-61570671 | None:intergenic |
| ACCAGATTGTGAGGAGTGTA+TGG | 0.441975 | 3_4:+61568830 | Msa0511880:CDS |
| ATCCACAAATTCCTCCTGAT+AGG | 0.443711 | 3_4:+61569033 | Msa0511880:CDS |
| TCCATACACTCCTCACAATC+TGG | 0.447884 | 3_4:-61568831 | None:intergenic |
| GCCCTATCAGGAGGAATTTG+TGG | 0.454616 | 3_4:-61569035 | None:intergenic |
| GGGTTTGAGTCCTCCATATG+TGG | 0.456417 | 3_4:-61570636 | None:intergenic |
| AGAACAGCAGGTGTGGAGCC+AGG | 0.460110 | 3_4:+61569287 | Msa0511880:CDS |
| AAACTAGCAACAACAATTGA+AGG | 0.464051 | 3_4:+61566326 | Msa0511880:CDS |
| CAACAATGCCTCGTGAAGTT+CGG | 0.465545 | 3_4:+61566588 | Msa0511880:CDS |
| TCCCATTCAAAGTTTCTCCT+TGG | 0.467329 | 3_4:+61568889 | Msa0511880:CDS |
| CTCCATATGTGGATCCCATA+AGG | 0.470691 | 3_4:-61570625 | None:intergenic |
| ATTAGTACAACGGTTGCTCT+TGG | 0.474142 | 3_4:-61568865 | None:intergenic |
| ACTAGATTCACTGACATAAA+CGG | 0.475270 | 3_4:+61568930 | Msa0511880:CDS |
| AATCTAGTGTTCCCATATCT+AGG | 0.479844 | 3_4:-61568915 | None:intergenic |
| GCTTGGATCTGTTGGATTAG+CGG | 0.482799 | 3_4:+61569331 | Msa0511880:CDS |
| AGCCTTATGGGATCCACATA+TGG | 0.485976 | 3_4:+61570623 | Msa0511880:CDS |
| TATCACTCTTTGGAAGATGC+AGG | 0.490619 | 3_4:+61566646 | Msa0511880:CDS |
| TCTATAACCAATGGCTCACC+AGG | 0.492988 | 3_4:-61566548 | None:intergenic |
| CTAGACTTTGTGGAGCAACT+AGG | 0.495288 | 3_4:+61569464 | Msa0511880:CDS |
| TGGAAACAAATCTGTGAGCC+AGG | 0.500954 | 3_4:+61569972 | Msa0511880:CDS |
| AAGGAAACCTGGTGAGCCAT+TGG | 0.503675 | 3_4:+61566541 | Msa0511880:CDS |
| AACCAAGGAGAAACTTTGAA+TGG | 0.508581 | 3_4:-61568891 | None:intergenic |
| TCTAGTGAGGTCCTTCATGA+TGG | 0.513744 | 3_4:+61570596 | Msa0511880:CDS |
| ACAACAATTGAAGGAAAAGA+AGG | 0.514230 | 3_4:+61566335 | Msa0511880:CDS |
| AGCATATGCTTCTTGTAGAA+AGG | 0.517256 | 3_4:+61570231 | Msa0511880:CDS |
| TAAATTTGTGACTCATGAGT+TGG | 0.518516 | 3_4:+61570855 | Msa0511880:CDS |
| TAGTTTATGATTGTGTTCCA+TGG | 0.520540 | 3_4:-61566309 | None:intergenic |
| GATGTAACTGAAGTAACAAA+AGG | 0.522782 | 3_4:+61568783 | Msa0511880:CDS |
| ACCAAGGAGAAACTTTGAAT+GGG | 0.524737 | 3_4:-61568890 | None:intergenic |
| GAACAGCAGGTGTGGAGCCA+GGG | 0.526658 | 3_4:+61569288 | Msa0511880:CDS |
| TTGTAGGGGTAGGTGCTGCT+TGG | 0.528518 | 3_4:+61569264 | Msa0511880:intron |
| AGGGCATGCCTTCTCGGTTG+TGG | 0.531330 | 3_4:+61569053 | Msa0511880:CDS |
| GCTGCTGTTGCAAGGAAACC+TGG | 0.533031 | 3_4:+61566530 | Msa0511880:intron |
| GGTGCTGCTTGGAGAACAGC+AGG | 0.537682 | 3_4:+61569275 | Msa0511880:CDS |
| TGTAGGGTTGTGGAAAGCGT+AGG | 0.539712 | 3_4:+61568756 | Msa0511880:intron |
| ATGTGTTGGTATGACATCAT+TGG | 0.553416 | 3_4:+61570201 | Msa0511880:CDS |
| CTGAGGCTTATCCTAGCTCC+TGG | 0.554246 | 3_4:-61570572 | None:intergenic |
| GTAGGGTTGTGGAAAGCGTA+GGG | 0.558720 | 3_4:+61568757 | Msa0511880:intron |
| GGTTGTGGAAAGCGTAGGGA+AGG | 0.560131 | 3_4:+61568761 | Msa0511880:CDS |
| TCCACAAATTCCTCCTGATA+GGG | 0.564310 | 3_4:+61569034 | Msa0511880:CDS |
| GTTATCATAGAGATGACTGA+TGG | 0.568363 | 3_4:+61570157 | Msa0511880:CDS |
| TTGATTTCTTAGGTTGCAGA+GGG | 0.573432 | 3_4:+61569439 | Msa0511880:intron |
| AAACTGTAGCTGCTGTTGCA+AGG | 0.576786 | 3_4:+61566522 | Msa0511880:intron |
| GGGTGGACAAGCCAGGAGCT+AGG | 0.580686 | 3_4:+61570561 | Msa0511880:CDS |
| TTTGTTCATGGTGAGGAATG+TGG | 0.586966 | 3_4:+61569952 | Msa0511880:CDS |
| GGACAACCTATAAGATGCAA+AGG | 0.590172 | 3_4:+61566356 | Msa0511880:CDS |
| CACAGACTTTGTTCATGGTG+AGG | 0.590684 | 3_4:+61569945 | Msa0511880:CDS |
| CTAGTGAGGTCCTTCATGAT+GGG | 0.592056 | 3_4:+61570597 | Msa0511880:CDS |
| TCTTCGATGTGTGATTTGGA+TGG | 0.597600 | 3_4:+61570927 | Msa0511880:CDS |
| ATTGATTTCTTAGGTTGCAG+AGG | 0.599458 | 3_4:+61569438 | Msa0511880:intron |
| AACTTCACGAGGCATTGTTG+GGG | 0.604993 | 3_4:-61566585 | None:intergenic |
| GTTATTAAGTGAGTTCACCA+TGG | 0.608060 | 3_4:+61566292 | Msa0511880:exon |
| ATGATGTCTTCTATAACCAA+TGG | 0.612545 | 3_4:-61566557 | None:intergenic |
| TAAGGCTCTTCCCATCATGA+AGG | 0.613165 | 3_4:-61570607 | None:intergenic |
| TGCTTGGAGAACAGCAGGTG+TGG | 0.624709 | 3_4:+61569280 | Msa0511880:CDS |
| TGAATGGGAAATTAGTACAA+CGG | 0.629184 | 3_4:-61568875 | None:intergenic |
| TTGATACACCACAACCGAGA+AGG | 0.629956 | 3_4:-61569061 | None:intergenic |
| AGCAACTAGGATTATTGGTG+TGG | 0.636179 | 3_4:+61569477 | Msa0511880:CDS |
| ATCATAGAGATGACTGATGG+AGG | 0.637658 | 3_4:+61570160 | Msa0511880:CDS |
| ACTTAAACGTTACATGGACA+AGG | 0.641875 | 3_4:+61570679 | Msa0511880:CDS |
| GAAGGACCTCACTAGAACTG+AGG | 0.642932 | 3_4:-61570589 | None:intergenic |
| CTTATGGGATCCACATATGG+AGG | 0.652537 | 3_4:+61570626 | Msa0511880:CDS |
| AGAAGGCATGCCCTATCAGG+AGG | 0.658173 | 3_4:-61569044 | None:intergenic |
| AATATAGCAACTGTTGACCC+TGG | 0.658258 | 3_4:-61569305 | None:intergenic |
| GATAAGCCTCAGTTCTAGTG+AGG | 0.659475 | 3_4:+61570583 | Msa0511880:CDS |
| TACACTCCTCACAATCTGGT+AGG | 0.673102 | 3_4:-61568827 | None:intergenic |
| ATACTAATCCGAACTTCACG+AGG | 0.673313 | 3_4:-61566596 | None:intergenic |
| AAGTTTCAGCGAGTATACCG+TGG | 0.679034 | 3_4:+61568983 | Msa0511880:CDS |
| TTCCCATATCTAGGCAACCA+AGG | 0.683585 | 3_4:-61568906 | None:intergenic |
| TATATTGGCGATGTCAACCA+CGG | 0.699696 | 3_4:-61569000 | None:intergenic |
| GGTTATAGAAGACATCATTG+TGG | 0.707672 | 3_4:+61566562 | Msa0511880:CDS |
| TCCAAAGAGTGATATCACTG+TGG | 0.768783 | 3_4:-61566637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATAAAATTATAAA+AGG | - | chr3_4:61568082-61568101 | None:intergenic | 0.0% |
| !!! | TTTGTAAAAAAATTTGTTAT+TGG | + | chr3_4:61567170-61567189 | Msa0511880:intron | 10.0% |
| !! | CTATTTAAAAAAAAAATCAA+AGG | - | chr3_4:61567596-61567615 | None:intergenic | 10.0% |
| !! | AAATTCATTCAAAAATCAAA+AGG | - | chr3_4:61566748-61566767 | None:intergenic | 15.0% |
| !!! | AGTAGATTTAGATTTTTTTT+AGG | + | chr3_4:61567061-61567080 | Msa0511880:intron | 15.0% |
| !!! | AGATTTTTTTTAGGTTTAAA+TGG | + | chr3_4:61567070-61567089 | Msa0511880:intron | 15.0% |
| !!! | GATTTTTTTTAGGTTTAAAT+GGG | + | chr3_4:61567071-61567090 | Msa0511880:intron | 15.0% |
| !! | AAAATAAAAGAAAATGGAAA+AGG | + | chr3_4:61567331-61567350 | Msa0511880:intron | 15.0% |
| !!! | CTTTGTAAAAAATTTGTTAT+TGG | - | chr3_4:61568206-61568225 | None:intergenic | 15.0% |
| !!! | ATTTCAGAGTTTTAAAAAAA+AGG | - | chr3_4:61568314-61568333 | None:intergenic | 15.0% |
| !! | TTAAAACTTGTAAATTTGTA+GGG | + | chr3_4:61569249-61569268 | Msa0511880:intron | 15.0% |
| !!! | TCTAAAACTTCAAATGATAA+TGG | - | chr3_4:61566464-61566483 | None:intergenic | 20.0% |
| !! | ATAAAATCAACCCTATAAAA+TGG | + | chr3_4:61566956-61566975 | Msa0511880:intron | 20.0% |
| !!! | AAATTTTTTTACAAAGTGCA+GGG | - | chr3_4:61567165-61567184 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTAAAGATGAACA+TGG | - | chr3_4:61567502-61567521 | None:intergenic | 20.0% |
| !! | GGTTGAATTAAATGATAAAA+TGG | + | chr3_4:61567733-61567752 | Msa0511880:intron | 20.0% |
| !! | ATAAAATGGTGATAAATCAA+TGG | + | chr3_4:61567747-61567766 | Msa0511880:intron | 20.0% |
| !! | TAAAATGGTGATAAATCAAT+GGG | + | chr3_4:61567748-61567767 | Msa0511880:intron | 20.0% |
| !! | TTTAAAGAAATAGAATTGCA+AGG | - | chr3_4:61567800-61567819 | None:intergenic | 20.0% |
| !! | TATAGATAAGAACAATATGA+CGG | + | chr3_4:61569123-61569142 | Msa0511880:intron | 20.0% |
| !! | GTTAAAACTTGTAAATTTGT+AGG | + | chr3_4:61569248-61569267 | Msa0511880:intron | 20.0% |
| !! | TAAAACTTGTAAATTTGTAG+GGG | + | chr3_4:61569250-61569269 | Msa0511880:intron | 20.0% |
| !!! | AACCATGAAAAATTTGAAAT+TGG | + | chr3_4:61569505-61569524 | Msa0511880:CDS | 20.0% |
| !!! | TACCAATTTCAAATTTTTCA+TGG | - | chr3_4:61569510-61569529 | None:intergenic | 20.0% |
| !! | AAACAAAATATTGGACTTAA+TGG | - | chr3_4:61569564-61569583 | None:intergenic | 20.0% |
| !! | AATAAGGTGAAAAAAACATA+TGG | - | chr3_4:61569736-61569755 | None:intergenic | 20.0% |
| !! | ATGAAGAAGTTATGAAAATA+AGG | - | chr3_4:61569752-61569771 | None:intergenic | 20.0% |
| !!! | TATTTTCATAACTTCTTCAT+AGG | + | chr3_4:61569752-61569771 | Msa0511880:intron | 20.0% |
| !! | TTAATATTGAAGTTTCAAGA+GGG | - | chr3_4:61570002-61570021 | None:intergenic | 20.0% |
| !! | TGTTAAACTAAATCAAAATG+TGG | + | chr3_4:61570123-61570142 | Msa0511880:intron | 20.0% |
| !!! | TTTGTGAAGTTTTACTTTAA+AGG | - | chr3_4:61570389-61570408 | None:intergenic | 20.0% |
| !!! | TTAACTAAATTTTGCTTTCA+GGG | + | chr3_4:61570515-61570534 | Msa0511880:intron | 20.0% |
| !! | CATTCTTATGTAATACTATA+TGG | + | chr3_4:61570961-61570980 | Msa0511880:three_prime_UTR | 20.0% |
| ! | GATCCATTATACATAATTCT+TGG | + | chr3_4:61566438-61566457 | Msa0511880:intron | 25.0% |
| !!! | CAGTTTTTTCAATGAAACAA+GGG | - | chr3_4:61566508-61566527 | None:intergenic | 25.0% |
| !!! | ACAGTTTTTTCAATGAAACA+AGG | - | chr3_4:61566509-61566528 | None:intergenic | 25.0% |
| ! | TACAAACAGGAACAAAAAAA+TGG | - | chr3_4:61566706-61566725 | None:intergenic | 25.0% |
| ! | CACTTATAGAAATTACAAAC+AGG | - | chr3_4:61566719-61566738 | None:intergenic | 25.0% |
| !!! | TACCCTTTTATATGTTTTGA+AGG | + | chr3_4:61566774-61566793 | Msa0511880:intron | 25.0% |
| ! | GTCCTTCAAAACATATAAAA+GGG | - | chr3_4:61566779-61566798 | None:intergenic | 25.0% |
| !!! | CACTTTTTTTTGTTTGGTTT+AGG | + | chr3_4:61567138-61567157 | Msa0511880:intron | 25.0% |
| !!! | CAAATTTTTTTACAAAGTGC+AGG | - | chr3_4:61567166-61567185 | None:intergenic | 25.0% |
| !!! | AAAAATTGTGTTGATGATGA+TGG | - | chr3_4:61567443-61567462 | None:intergenic | 25.0% |
| ! | AAACAAAATTCTTCCTAACA+TGG | + | chr3_4:61567515-61567534 | Msa0511880:intron | 25.0% |
| ! | GTACTGTTTACAAATGAAAT+TGG | - | chr3_4:61567548-61567567 | None:intergenic | 25.0% |
| !! | CTTTGAAAAAAAGTCATTGA+AGG | - | chr3_4:61567653-61567672 | None:intergenic | 25.0% |
| !!! | AAGTCATTTTTCAGCATTAA+TGG | + | chr3_4:61567670-61567689 | Msa0511880:intron | 25.0% |
| !!! | TATGATTGAGTTTTTGTTTC+AGG | + | chr3_4:61567712-61567731 | Msa0511880:intron | 25.0% |
| ! | AACAAAGAATAGAAGAGAAA+AGG | + | chr3_4:61567859-61567878 | Msa0511880:intron | 25.0% |
| !! | ATGAATGAGATAGTGAATTT+TGG | + | chr3_4:61567894-61567913 | Msa0511880:intron | 25.0% |
| !!! | ACAAATTTTTTACAAAGTGC+AGG | + | chr3_4:61568209-61568228 | Msa0511880:intron | 25.0% |
| !!! | CAAATTTTTTACAAAGTGCA+GGG | + | chr3_4:61568210-61568229 | Msa0511880:intron | 25.0% |
| ! | AAGAACTTAATGGCATTAAT+TGG | - | chr3_4:61568665-61568684 | None:intergenic | 25.0% |
| !! | AACCAATTTTTATGTGATGT+AGG | + | chr3_4:61568739-61568758 | Msa0511880:intron | 25.0% |
| !! | ACCAATTTTTATGTGATGTA+GGG | + | chr3_4:61568740-61568759 | Msa0511880:intron | 25.0% |
| ! | TGGATCAATCTTTAGTATAT+TGG | - | chr3_4:61569018-61569037 | None:intergenic | 25.0% |
| !! | AACAACCTTTCTTTTATTCA+TGG | - | chr3_4:61569172-61569191 | None:intergenic | 25.0% |
| !!! | AAGACTTTGAAACATTGAAT+TGG | - | chr3_4:61569220-61569239 | None:intergenic | 25.0% |
| !! | TTGCAATTGATTGATTTCTT+AGG | + | chr3_4:61569429-61569448 | Msa0511880:intron | 25.0% |
| ! | GGTGGTTAAAAACAAAATAT+TGG | - | chr3_4:61569573-61569592 | None:intergenic | 25.0% |
| !!! | TAATACCTTTTTCTAGTGAA+GGG | - | chr3_4:61569610-61569629 | None:intergenic | 25.0% |
| !!! | ATAATACCTTTTTCTAGTGA+AGG | - | chr3_4:61569611-61569630 | None:intergenic | 25.0% |
| !!! | TTCACTAGAAAAAGGTATTA+TGG | + | chr3_4:61569610-61569629 | Msa0511880:intron | 25.0% |
| ! | CCTGATTAAATGAAAGAAAA+AGG | - | chr3_4:61569910-61569929 | None:intergenic | 25.0% |
| !! | CCTTTTTCTTTCATTTAATC+AGG | + | chr3_4:61569907-61569926 | Msa0511880:intron | 25.0% |
| ! | ATTTAATCAGGAAAGAAGTT+TGG | + | chr3_4:61569919-61569938 | Msa0511880:intron | 25.0% |
| ! | GTTAATATTGAAGTTTCAAG+AGG | - | chr3_4:61570003-61570022 | None:intergenic | 25.0% |
| !!! | GATTATTGTTTTGAATGTGT+TGG | + | chr3_4:61570187-61570206 | Msa0511880:CDS | 25.0% |
| ! | GTACATCAAACTTTATGAAA+GGG | - | chr3_4:61570367-61570386 | None:intergenic | 25.0% |
| ! | GGTTAATATGTTTCAGTTAA+AGG | - | chr3_4:61570459-61570478 | None:intergenic | 25.0% |
| ! | CTAACACTTAACAAACAAAA+TGG | - | chr3_4:61570493-61570512 | None:intergenic | 25.0% |
| !! | GTTAACTAAATTTTGCTTTC+AGG | + | chr3_4:61570514-61570533 | Msa0511880:intron | 25.0% |
| ! | ATGTAACGTTTAAGTAGAAT+TGG | - | chr3_4:61570674-61570693 | None:intergenic | 25.0% |
| ! | AATTCTACTTAAACGTTACA+TGG | + | chr3_4:61570673-61570692 | Msa0511880:CDS | 25.0% |
| !!! | AGTTCCTTTTGTTTCATTTT+TGG | + | chr3_4:61570712-61570731 | Msa0511880:intron | 25.0% |
| ! | ATGTCCAAAAATGAAACAAA+AGG | - | chr3_4:61570719-61570738 | None:intergenic | 25.0% |
| ! | ACATGAAAGATCAAATGATT+TGG | + | chr3_4:61570773-61570792 | Msa0511880:intron | 25.0% |
| ! | CATGAAAGATCAAATGATTT+GGG | + | chr3_4:61570774-61570793 | Msa0511880:intron | 25.0% |
| ! | ATGAAAGATCAAATGATTTG+GGG | + | chr3_4:61570775-61570794 | Msa0511880:intron | 25.0% |
| !! | TTTCCAATGTGTTAAAGTTT+TGG | + | chr3_4:61570800-61570819 | Msa0511880:intron | 25.0% |
| !!! | GCTTTTGATTTATTGAGTAA+AGG | + | chr3_4:61570898-61570917 | Msa0511880:CDS | 25.0% |
| TAGTTTATGATTGTGTTCCA+TGG | - | chr3_4:61566312-61566331 | None:intergenic | 30.0% | |
| AAACTAGCAACAACAATTGA+AGG | + | chr3_4:61566326-61566345 | Msa0511880:CDS | 30.0% | |
| ACAACAATTGAAGGAAAAGA+AGG | + | chr3_4:61566335-61566354 | Msa0511880:CDS | 30.0% | |
| TGGCCAAGAATTATGTATAA+TGG | - | chr3_4:61566444-61566463 | None:intergenic | 30.0% | |
| ATGATGTCTTCTATAACCAA+TGG | - | chr3_4:61566560-61566579 | None:intergenic | 30.0% | |
| GGTCCTTCAAAACATATAAA+AGG | - | chr3_4:61566780-61566799 | None:intergenic | 30.0% | |
| AAAATTCTTGGAAAAATGCC+AGG | - | chr3_4:61566805-61566824 | None:intergenic | 30.0% | |
| ! | TGGCATTTTTCCAAGAATTT+TGG | + | chr3_4:61566804-61566823 | Msa0511880:CDS | 30.0% |
| ! | GGCATTTTTCCAAGAATTTT+GGG | + | chr3_4:61566805-61566824 | Msa0511880:CDS | 30.0% |
| ! | CAACGCAAATCCATTTTATA+GGG | - | chr3_4:61566969-61566988 | None:intergenic | 30.0% |
| ATCTAAATCTACTTGCTTTC+TGG | - | chr3_4:61567054-61567073 | None:intergenic | 30.0% | |
| ! | CTTTGACCATTTTATGGTAT+TGG | + | chr3_4:61567109-61567128 | Msa0511880:intron | 30.0% |
| ! | ACCAAACAAAAAAAAGTGCA+GGG | - | chr3_4:61568239-61568258 | None:intergenic | 30.0% |
| ! | AACCAAACAAAAAAAAGTGC+AGG | - | chr3_4:61568238-61568257 | None:intergenic | 30.0% |
| TTTAACAGTCAACTAACAGA+GGG | - | chr3_4:61567197-61567216 | None:intergenic | 30.0% | |
| ! | TTTTAACAGTCAACTAACAG+AGG | - | chr3_4:61567198-61567217 | None:intergenic | 30.0% |
| TTTGAATGGAAGATGATGAA+TGG | - | chr3_4:61567389-61567408 | None:intergenic | 30.0% | |
| GAATAGAAGAGAAAAGGATT+TGG | + | chr3_4:61567865-61567884 | Msa0511880:intron | 30.0% | |
| !! | TTTTGGAGAAAAAGATCATG+AGG | + | chr3_4:61567911-61567930 | Msa0511880:intron | 30.0% |
| TTTGGAGAAAAAGATCATGA+GGG | + | chr3_4:61567912-61567931 | Msa0511880:intron | 30.0% | |
| !!! | ACTTTTTGAGTTGCTGTTTT+TGG | + | chr3_4:61567981-61568000 | Msa0511880:intron | 30.0% |
| ! | AACCAAACAAAAAAAAGTGC+AGG | + | chr3_4:61568238-61568257 | Msa0511880:intron | 30.0% |
| ! | ACCAAACAAAAAAAAGTGCA+GGG | + | chr3_4:61568239-61568258 | Msa0511880:intron | 30.0% |
| !!! | CTTTGACCATTTTTTGGTAT+TGG | - | chr3_4:61568266-61568285 | None:intergenic | 30.0% |
| TTGCTTGAAATTTAGACCTT+TGG | + | chr3_4:61568337-61568356 | Msa0511880:intron | 30.0% | |
| AAATTGCTCACAGATGTATT+TGG | - | chr3_4:61568404-61568423 | None:intergenic | 30.0% | |
| ACATCTGTGAGCAATTTATT+TGG | + | chr3_4:61568407-61568426 | Msa0511880:intron | 30.0% | |
| TGTGAGCAATTTATTTGGAT+AGG | + | chr3_4:61568412-61568431 | Msa0511880:intron | 30.0% | |
| GGTTGTATTTGTAAATCACA+TGG | - | chr3_4:61568491-61568510 | None:intergenic | 30.0% | |
| ATAAAACAATGCTCATACTC+TGG | - | chr3_4:61568565-61568584 | None:intergenic | 30.0% | |
| !!! | TTCATCTGTCTTGTTTTGTA+TGG | + | chr3_4:61568613-61568632 | Msa0511880:intron | 30.0% |
| !!! | TCATCTGTCTTGTTTTGTAT+GGG | + | chr3_4:61568614-61568633 | Msa0511880:intron | 30.0% |
| ! | CTCAAATATTTAAGACCCAT+GGG | + | chr3_4:61568692-61568711 | Msa0511880:intron | 30.0% |
| ACCCTACATCACATAAAAAT+TGG | - | chr3_4:61568744-61568763 | None:intergenic | 30.0% | |
| GATGTAACTGAAGTAACAAA+AGG | + | chr3_4:61568783-61568802 | Msa0511880:CDS | 30.0% | |
| TGAATGGGAAATTAGTACAA+CGG | - | chr3_4:61568878-61568897 | None:intergenic | 30.0% | |
| ACTAGATTCACTGACATAAA+CGG | + | chr3_4:61568930-61568949 | Msa0511880:CDS | 30.0% | |
| TCCATTAGGGTCAAATTAAT+TGG | + | chr3_4:61569146-61569165 | Msa0511880:intron | 30.0% | |
| ATTGGCCATGAATAAAAGAA+AGG | + | chr3_4:61569164-61569183 | Msa0511880:intron | 30.0% | |
| GGTACATCAAACTTTATGAA+AGG | - | chr3_4:61570368-61570387 | None:intergenic | 30.0% | |
| ACAAATAATTGTTTCAGCCA+AGG | + | chr3_4:61570404-61570423 | Msa0511880:intron | 30.0% | |
| CAGTTAAAGGCAAATAGATT+AGG | - | chr3_4:61570446-61570465 | None:intergenic | 30.0% | |
| ! | TAAATTTTGCTTTCAGGGTT+GGG | + | chr3_4:61570520-61570539 | Msa0511880:intron | 30.0% |
| ! | TGGGGAAAAACAATTGTTTT+AGG | + | chr3_4:61570539-61570558 | Msa0511880:CDS | 30.0% |
| !! | GGGGAAAAACAATTGTTTTA+GGG | + | chr3_4:61570540-61570559 | Msa0511880:CDS | 30.0% |
| !!! | GGGAAAAACAATTGTTTTAG+GGG | + | chr3_4:61570541-61570560 | Msa0511880:CDS | 30.0% |
| !!! | AAAAACAATTGTTTTAGGGG+TGG | + | chr3_4:61570544-61570563 | Msa0511880:CDS | 30.0% |
| AGAATTGGTACATGAGATTT+GGG | - | chr3_4:61570659-61570678 | None:intergenic | 30.0% | |
| TAGAATTGGTACATGAGATT+TGG | - | chr3_4:61570660-61570679 | None:intergenic | 30.0% | |
| TAAATTTGTGACTCATGAGT+TGG | + | chr3_4:61570855-61570874 | Msa0511880:CDS | 30.0% | |
| ! | GTAATACTATATGGCCTTTT+TGG | + | chr3_4:61570970-61570989 | Msa0511880:three_prime_UTR | 30.0% |
| AATCAAGTCACTATCCAAAA+AGG | - | chr3_4:61570987-61571006 | None:intergenic | 30.0% | |
| GTTATTAAGTGAGTTCACCA+TGG | + | chr3_4:61566292-61566311 | Msa0511880:exon | 35.0% | |
| GGTTATAGAAGACATCATTG+TGG | + | chr3_4:61566562-61566581 | Msa0511880:CDS | 35.0% | |
| ! | GCAACGCAAATCCATTTTAT+AGG | - | chr3_4:61566970-61566989 | None:intergenic | 35.0% |
| CATAAAATGGTCAAAGTGCA+AGG | - | chr3_4:61567105-61567124 | None:intergenic | 35.0% | |
| ! | CTTGCACTTTGACCATTTTA+TGG | + | chr3_4:61567103-61567122 | Msa0511880:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr3_4:61567132-61567151 | Msa0511880:intron | 35.0% |
| AAAGAAAATGGAAAAGGACG+AGG | + | chr3_4:61567337-61567356 | Msa0511880:intron | 35.0% | |
| AAGAAGATGCTGAGTTTGAA+TGG | - | chr3_4:61567403-61567422 | None:intergenic | 35.0% | |
| !! | ATTGTGTTGATGATGATGGT+TGG | - | chr3_4:61567439-61567458 | None:intergenic | 35.0% |
| ! | AATTGGTTCACAACCATGTT+AGG | - | chr3_4:61567531-61567550 | None:intergenic | 35.0% |
| ! | CAGACCATCTTCATTTTCAT+TGG | + | chr3_4:61567567-61567586 | Msa0511880:intron | 35.0% |
| ! | TCATCTGAGTTTTCATCGAT+GGG | - | chr3_4:61567827-61567846 | None:intergenic | 35.0% |
| ! | ATCATCTGAGTTTTCATCGA+TGG | - | chr3_4:61567828-61567847 | None:intergenic | 35.0% |
| !!! | TTTTTGGTCTTAAGTGTTGC+TGG | + | chr3_4:61567997-61568016 | Msa0511880:intron | 35.0% |
| !!! | TTTTGGTCTTAAGTGTTGCT+GGG | + | chr3_4:61567998-61568017 | Msa0511880:intron | 35.0% |
| ! | TGAACGATGAAGAAGGATTT+TGG | + | chr3_4:61568037-61568056 | Msa0511880:intron | 35.0% |
| ! | GAACGATGAAGAAGGATTTT+GGG | + | chr3_4:61568038-61568057 | Msa0511880:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | - | chr3_4:61567132-61567151 | None:intergenic | 35.0% |
| !!! | CTTGCACTTTGACCATTTTT+TGG | - | chr3_4:61568272-61568291 | None:intergenic | 35.0% |
| CAAAAAATGGTCAAAGTGCA+AGG | + | chr3_4:61568270-61568289 | Msa0511880:intron | 35.0% | |
| ! | TGTTGATTACTGTTTGATCG+AGG | - | chr3_4:61568364-61568383 | None:intergenic | 35.0% |
| AAGCACTATATACTCCATTG+TGG | + | chr3_4:61568448-61568467 | Msa0511880:intron | 35.0% | |
| GAGCATGTAGAAGAACTTAA+TGG | - | chr3_4:61568675-61568694 | None:intergenic | 35.0% | |
| ! | GCTCAAATATTTAAGACCCA+TGG | + | chr3_4:61568691-61568710 | Msa0511880:intron | 35.0% |
| ACACTTCATTATCTTCCCAT+GGG | - | chr3_4:61568710-61568729 | None:intergenic | 35.0% | |
| AACACTTCATTATCTTCCCA+TGG | - | chr3_4:61568711-61568730 | None:intergenic | 35.0% | |
| ! | TTTTATGTGATGTAGGGTTG+TGG | + | chr3_4:61568746-61568765 | Msa0511880:intron | 35.0% |
| TCACAATCTGGTAGGAAAAT+TGG | - | chr3_4:61568822-61568841 | None:intergenic | 35.0% | |
| ! | AATTTTCCTACCAGATTGTG+AGG | + | chr3_4:61568821-61568840 | Msa0511880:CDS | 35.0% |
| ACCAAGGAGAAACTTTGAAT+GGG | - | chr3_4:61568893-61568912 | None:intergenic | 35.0% | |
| AACCAAGGAGAAACTTTGAA+TGG | - | chr3_4:61568894-61568913 | None:intergenic | 35.0% | |
| AATCTAGTGTTCCCATATCT+AGG | - | chr3_4:61568918-61568937 | None:intergenic | 35.0% | |
| AACAATATGACGGTCCATTA+GGG | + | chr3_4:61569133-61569152 | Msa0511880:intron | 35.0% | |
| ! | GCCAATTAATTTGACCCTAA+TGG | - | chr3_4:61569150-61569169 | None:intergenic | 35.0% |
| ACTTGTAAATTTGTAGGGGT+AGG | + | chr3_4:61569254-61569273 | Msa0511880:intron | 35.0% | |
| GGTCAACAGTTGCTATATTT+GGG | + | chr3_4:61569309-61569328 | Msa0511880:CDS | 35.0% | |
| ! | ATTGATTTCTTAGGTTGCAG+AGG | + | chr3_4:61569438-61569457 | Msa0511880:intron | 35.0% |
| ! | TTGATTTCTTAGGTTGCAGA+GGG | + | chr3_4:61569439-61569458 | Msa0511880:intron | 35.0% |
| ACTTGTTTGAGCTTATCTAG+TGG | + | chr3_4:61569655-61569674 | Msa0511880:intron | 35.0% | |
| AGAATACTTAGACGAGCTTT+CGG | + | chr3_4:61569692-61569711 | Msa0511880:intron | 35.0% | |
| AGAACAGATCCTAACTACTA+GGG | + | chr3_4:61569829-61569848 | Msa0511880:intron | 35.0% | |
| ATATTGAAGTTTCAAGAGGG+TGG | - | chr3_4:61569999-61570018 | None:intergenic | 35.0% | |
| GTTATCATAGAGATGACTGA+TGG | + | chr3_4:61570157-61570176 | Msa0511880:CDS | 35.0% | |
| ! | ATGTGTTGGTATGACATCAT+TGG | + | chr3_4:61570201-61570220 | Msa0511880:CDS | 35.0% |
| AGCATATGCTTCTTGTAGAA+AGG | + | chr3_4:61570231-61570250 | Msa0511880:CDS | 35.0% | |
| TGTCTCTATATGACAGTGTA+AGG | - | chr3_4:61570292-61570311 | None:intergenic | 35.0% | |
| ! | CTAAATTTTGCTTTCAGGGT+TGG | + | chr3_4:61570519-61570538 | Msa0511880:intron | 35.0% |
| ! | AAATTTTGCTTTCAGGGTTG+GGG | + | chr3_4:61570521-61570540 | Msa0511880:intron | 35.0% |
| ACTTAAACGTTACATGGACA+AGG | + | chr3_4:61570679-61570698 | Msa0511880:CDS | 35.0% | |
| GAGCCAAAACTTTAACACAT+TGG | - | chr3_4:61570806-61570825 | None:intergenic | 35.0% | |
| GGACAACCTATAAGATGCAA+AGG | + | chr3_4:61566356-61566375 | Msa0511880:CDS | 40.0% | |
| AGCAGACCTTTGCATCTTAT+AGG | - | chr3_4:61566365-61566384 | None:intergenic | 40.0% | |
| ATACTAATCCGAACTTCACG+AGG | - | chr3_4:61566599-61566618 | None:intergenic | 40.0% | |
| TCCAAAGAGTGATATCACTG+TGG | - | chr3_4:61566640-61566659 | None:intergenic | 40.0% | |
| ! | TATCACTCTTTGGAAGATGC+AGG | + | chr3_4:61566646-61566665 | Msa0511880:CDS | 40.0% |
| TTCTTGGAAAAATGCCAGGA+GGG | - | chr3_4:61566801-61566820 | None:intergenic | 40.0% | |
| ATTCTTGGAAAAATGCCAGG+AGG | - | chr3_4:61566802-61566821 | None:intergenic | 40.0% | |
| !! | TCCAAGAATTTTGGGTCATG+AGG | + | chr3_4:61566813-61566832 | Msa0511880:CDS | 40.0% |
| CAGGGACCAATACCATAAAA+TGG | - | chr3_4:61567118-61567137 | None:intergenic | 40.0% | |
| AAAATGGAAAAGGACGAGGA+AGG | + | chr3_4:61567341-61567360 | Msa0511880:intron | 40.0% | |
| GACGCCAATGAAAATGAAGA+TGG | - | chr3_4:61567574-61567593 | None:intergenic | 40.0% | |
| ! | GAAACCAACGCAGATAGTTT+TGG | - | chr3_4:61567622-61567641 | None:intergenic | 40.0% |
| !! | ACTATCTGCGTTGGTTTCAT+TGG | + | chr3_4:61567624-61567643 | Msa0511880:intron | 40.0% |
| ! | TCTGTGTTGTTGTGTCTTTG+CGG | + | chr3_4:61567950-61567969 | Msa0511880:intron | 40.0% |
| ACAGTCAACTCAACTAACAG+AGG | + | chr3_4:61568178-61568197 | Msa0511880:intron | 40.0% | |
| CAGTCAACTCAACTAACAGA+GGG | + | chr3_4:61568179-61568198 | Msa0511880:intron | 40.0% | |
| CAGGGACCAATACCAAAAAA+TGG | + | chr3_4:61568257-61568276 | Msa0511880:intron | 40.0% | |
| ! | GTAATCAACATGTTGACTGC+AGG | + | chr3_4:61568374-61568393 | Msa0511880:intron | 40.0% |
| GGTTGCAGTTGTGTTACAAT+TGG | - | chr3_4:61568512-61568531 | None:intergenic | 40.0% | |
| CATATGCAGCAGCTATATTG+CGG | - | chr3_4:61568533-61568552 | None:intergenic | 40.0% | |
| TAGCTGCTGCATATGTAATG+TGG | + | chr3_4:61568538-61568557 | Msa0511880:intron | 40.0% | |
| ATTAGTACAACGGTTGCTCT+TGG | - | chr3_4:61568868-61568887 | None:intergenic | 40.0% | |
| TCCCATTCAAAGTTTCTCCT+TGG | + | chr3_4:61568889-61568908 | Msa0511880:CDS | 40.0% | |
| TATATTGGCGATGTCAACCA+CGG | - | chr3_4:61569003-61569022 | None:intergenic | 40.0% | |
| ATCCACAAATTCCTCCTGAT+AGG | + | chr3_4:61569033-61569052 | Msa0511880:CDS | 40.0% | |
| TCCACAAATTCCTCCTGATA+GGG | + | chr3_4:61569034-61569053 | Msa0511880:CDS | 40.0% | |
| GAACAATATGACGGTCCATT+AGG | + | chr3_4:61569132-61569151 | Msa0511880:intron | 40.0% | |
| AATATAGCAACTGTTGACCC+TGG | - | chr3_4:61569308-61569327 | None:intergenic | 40.0% | |
| GGGTCAACAGTTGCTATATT+TGG | + | chr3_4:61569308-61569327 | Msa0511880:CDS | 40.0% | |
| ACAGTTGCTATATTTGGGCT+TGG | + | chr3_4:61569314-61569333 | Msa0511880:CDS | 40.0% | |
| ATATTTGGGCTTGGATCTGT+TGG | + | chr3_4:61569323-61569342 | Msa0511880:CDS | 40.0% | |
| TGTGGAGCAACTAGGATTAT+TGG | + | chr3_4:61569472-61569491 | Msa0511880:CDS | 40.0% | |
| AGCAACTAGGATTATTGGTG+TGG | + | chr3_4:61569477-61569496 | Msa0511880:CDS | 40.0% | |
| ! | TGAAGGGCTTTGTAACATGA+GGG | - | chr3_4:61569594-61569613 | None:intergenic | 40.0% |
| CAAAGCCCTTCACTAGAAAA+AGG | + | chr3_4:61569602-61569621 | Msa0511880:intron | 40.0% | |
| CAGAACAGATCCTAACTACT+AGG | + | chr3_4:61569828-61569847 | Msa0511880:intron | 40.0% | |
| GAACAGATCCTAACTACTAG+GGG | + | chr3_4:61569830-61569849 | Msa0511880:intron | 40.0% | |
| TTTGTTCATGGTGAGGAATG+TGG | + | chr3_4:61569952-61569971 | Msa0511880:CDS | 40.0% | |
| ATCATAGAGATGACTGATGG+AGG | + | chr3_4:61570160-61570179 | Msa0511880:CDS | 40.0% | |
| ACAGTGTAAGGATGTGTGTT+TGG | - | chr3_4:61570280-61570299 | None:intergenic | 40.0% | |
| ! | GTACGTTTGAGTTTGATCCT+TGG | - | chr3_4:61570424-61570443 | None:intergenic | 40.0% |
| AACAAAATGGTCGAAGCAAG+TGG | - | chr3_4:61570480-61570499 | None:intergenic | 40.0% | |
| ! | TTGGCTCATTGATTAACTGC+AGG | + | chr3_4:61570819-61570838 | Msa0511880:intron | 40.0% |
| TTAACTGCAGGAACTGCAAT+TGG | + | chr3_4:61570831-61570850 | Msa0511880:intron | 40.0% | |
| ! | GACTCATGAGTTGGAGTTTA+AGG | + | chr3_4:61570864-61570883 | Msa0511880:CDS | 40.0% |
| AGTGTCTTCGATGTGTGATT+TGG | + | chr3_4:61570923-61570942 | Msa0511880:CDS | 40.0% | |
| ! | TCTTCGATGTGTGATTTGGA+TGG | + | chr3_4:61570927-61570946 | Msa0511880:CDS | 40.0% |
| AAACTGTAGCTGCTGTTGCA+AGG | + | chr3_4:61566522-61566541 | Msa0511880:intron | 45.0% | |
| TCTATAACCAATGGCTCACC+AGG | - | chr3_4:61566551-61566570 | None:intergenic | 45.0% | |
| !! | AACTTCACGAGGCATTGTTG+GGG | - | chr3_4:61566588-61566607 | None:intergenic | 45.0% |
| !! | GAACTTCACGAGGCATTGTT+GGG | - | chr3_4:61566589-61566608 | None:intergenic | 45.0% |
| CAACAATGCCTCGTGAAGTT+CGG | + | chr3_4:61566588-61566607 | Msa0511880:CDS | 45.0% | |
| GCCACAGTGATATCACTCTT+TGG | + | chr3_4:61566636-61566655 | Msa0511880:CDS | 45.0% | |
| !!! | TATGTTTTGAAGGACCCTCC+TGG | + | chr3_4:61566784-61566803 | Msa0511880:intron | 45.0% |
| GCCTCATGACCCAAAATTCT+TGG | - | chr3_4:61566817-61566836 | None:intergenic | 45.0% | |
| !! | ATTTTGGGTCATGAGGCAAC+TGG | + | chr3_4:61566820-61566839 | Msa0511880:CDS | 45.0% |
| !! | TTTTGGGTCATGAGGCAACT+GGG | + | chr3_4:61566821-61566840 | Msa0511880:CDS | 45.0% |
| ! | ATCAACACATCGTTGACTGC+TGG | + | chr3_4:61567011-61567030 | Msa0511880:intron | 45.0% |
| !!! | GTGGCACTCTGTTAGTTTTG+GGG | - | chr3_4:61568147-61568166 | None:intergenic | 45.0% |
| !!! | CGTGGCACTCTGTTAGTTTT+GGG | - | chr3_4:61568146-61568165 | None:intergenic | 45.0% |
| !! | ACGTGGCACTCTGTTAGTTT+TGG | - | chr3_4:61568145-61568164 | None:intergenic | 45.0% |
| ! | AAAACTAACAGAGTGCCACG+TGG | + | chr3_4:61567225-61567244 | Msa0511880:intron | 45.0% |
| CCACGTGGCACAAAATGATT+GGG | - | chr3_4:61568120-61568139 | None:intergenic | 45.0% | |
| GCAACCAAAACTATCTGCGT+TGG | + | chr3_4:61567615-61567634 | Msa0511880:intron | 45.0% | |
| AGATCATGAGGGTGAGTCAA+AGG | + | chr3_4:61567923-61567942 | Msa0511880:intron | 45.0% | |
| ! | TCTTAAGTGTTGCTGGGTTC+TGG | + | chr3_4:61568004-61568023 | Msa0511880:intron | 45.0% |
| ! | CTTAAGTGTTGCTGGGTTCT+GGG | + | chr3_4:61568005-61568024 | Msa0511880:intron | 45.0% |
| TGGGGAATGAACGATGAAGA+AGG | + | chr3_4:61568030-61568049 | Msa0511880:intron | 45.0% | |
| CCACGTGGCACAAAATGATT+GGG | + | chr3_4:61568120-61568139 | Msa0511880:intron | 45.0% | |
| ! | AAAACTAACAGAGTGCCACG+TGG | - | chr3_4:61567225-61567244 | None:intergenic | 45.0% |
| !! | ACGTGGCACTCTGTTAGTTT+TGG | + | chr3_4:61568145-61568164 | Msa0511880:intron | 45.0% |
| !!! | CGTGGCACTCTGTTAGTTTT+GGG | + | chr3_4:61568146-61568165 | Msa0511880:intron | 45.0% |
| !!! | GTGGCACTCTGTTAGTTTTG+GGG | + | chr3_4:61568147-61568166 | Msa0511880:intron | 45.0% |
| ACTGTTTGATCGAGGTCCAA+AGG | - | chr3_4:61568356-61568375 | None:intergenic | 45.0% | |
| TCCATTGTGGCGTTGCAATA+TGG | + | chr3_4:61568461-61568480 | Msa0511880:intron | 45.0% | |
| TCCATATTGCAACGCCACAA+TGG | - | chr3_4:61568465-61568484 | None:intergenic | 45.0% | |
| TACACTCCTCACAATCTGGT+AGG | - | chr3_4:61568830-61568849 | None:intergenic | 45.0% | |
| ! | ACCAGATTGTGAGGAGTGTA+TGG | + | chr3_4:61568830-61568849 | Msa0511880:CDS | 45.0% |
| TCCATACACTCCTCACAATC+TGG | - | chr3_4:61568834-61568853 | None:intergenic | 45.0% | |
| TCTCCTTGGTTGCCTAGATA+TGG | + | chr3_4:61568903-61568922 | Msa0511880:CDS | 45.0% | |
| CTCCTTGGTTGCCTAGATAT+GGG | + | chr3_4:61568904-61568923 | Msa0511880:CDS | 45.0% | |
| TTCCCATATCTAGGCAACCA+AGG | - | chr3_4:61568909-61568928 | None:intergenic | 45.0% | |
| AAGTTTCAGCGAGTATACCG+TGG | + | chr3_4:61568983-61569002 | Msa0511880:CDS | 45.0% | |
| TTGATACACCACAACCGAGA+AGG | - | chr3_4:61569064-61569083 | None:intergenic | 45.0% | |
| ! | GCTTGGATCTGTTGGATTAG+CGG | + | chr3_4:61569331-61569350 | Msa0511880:CDS | 45.0% |
| !! | GATCTGTTGGATTAGCGGTA+TGG | + | chr3_4:61569336-61569355 | Msa0511880:intron | 45.0% |
| TCTGAGTCTGCGACTCTTTA+TGG | + | chr3_4:61569383-61569402 | Msa0511880:intron | 45.0% | |
| CTAGACTTTGTGGAGCAACT+AGG | + | chr3_4:61569464-61569483 | Msa0511880:CDS | 45.0% | |
| ! | GTGAAGGGCTTTGTAACATG+AGG | - | chr3_4:61569595-61569614 | None:intergenic | 45.0% |
| GCACAATTCCCCTAGTAGTT+AGG | - | chr3_4:61569841-61569860 | None:intergenic | 45.0% | |
| TTGCATAGTAGCCTCAGAAG+TGG | - | chr3_4:61569863-61569882 | None:intergenic | 45.0% | |
| GGACTCACAGACTTTGTTCA+TGG | + | chr3_4:61569940-61569959 | Msa0511880:CDS | 45.0% | |
| CACAGACTTTGTTCATGGTG+AGG | + | chr3_4:61569945-61569964 | Msa0511880:CDS | 45.0% | |
| TGGAAACAAATCTGTGAGCC+AGG | + | chr3_4:61569972-61569991 | Msa0511880:CDS | 45.0% | |
| TCAAAATGTGGTTGCTGAGC+AGG | + | chr3_4:61570135-61570154 | Msa0511880:intron | 45.0% | |
| ! | GATAAGCCTCAGTTCTAGTG+AGG | + | chr3_4:61570583-61570602 | Msa0511880:CDS | 45.0% |
| TCTAGTGAGGTCCTTCATGA+TGG | + | chr3_4:61570596-61570615 | Msa0511880:CDS | 45.0% | |
| CTAGTGAGGTCCTTCATGAT+GGG | + | chr3_4:61570597-61570616 | Msa0511880:CDS | 45.0% | |
| TAAGGCTCTTCCCATCATGA+AGG | - | chr3_4:61570610-61570629 | None:intergenic | 45.0% | |
| ! | TCATGATGGGAAGAGCCTTA+TGG | + | chr3_4:61570610-61570629 | Msa0511880:CDS | 45.0% |
| ! | CATGATGGGAAGAGCCTTAT+GGG | + | chr3_4:61570611-61570630 | Msa0511880:CDS | 45.0% |
| ! | AGCCTTATGGGATCCACATA+TGG | + | chr3_4:61570623-61570642 | Msa0511880:CDS | 45.0% |
| CTCCATATGTGGATCCCATA+AGG | - | chr3_4:61570628-61570647 | None:intergenic | 45.0% | |
| CTTATGGGATCCACATATGG+AGG | + | chr3_4:61570626-61570645 | Msa0511880:CDS | 45.0% | |
| !! | AAATAAAAAATAAAAGAAAA+TGG | + | chr3_4:61567325-61567344 | Msa0511880:intron | 5.0% |
| AAGGAAACCTGGTGAGCCAT+TGG | + | chr3_4:61566541-61566560 | Msa0511880:CDS | 50.0% | |
| !! | CGAACTTCACGAGGCATTGT+TGG | - | chr3_4:61566590-61566609 | None:intergenic | 50.0% |
| CACAAAATGATTGGGCCACG+TGG | - | chr3_4:61568128-61568147 | None:intergenic | 50.0% | |
| ! | CCCAATCATTTTGTGCCACG+TGG | + | chr3_4:61567248-61567267 | Msa0511880:intron | 50.0% |
| GCCACGTGGCACAAAATGAT+TGG | - | chr3_4:61568119-61568138 | None:intergenic | 50.0% | |
| TTGTCTTGTAGTGTGCCACG+TGG | - | chr3_4:61568105-61568124 | None:intergenic | 50.0% | |
| GTTGTTGTGTCTTTGCGGTC+TGG | + | chr3_4:61567955-61567974 | Msa0511880:intron | 50.0% | |
| !! | TGTTGCTGGGTTCTGGGTTT+GGG | + | chr3_4:61568011-61568030 | Msa0511880:intron | 50.0% |
| TTGTCTTGTAGTGTGCCACG+TGG | + | chr3_4:61568105-61568124 | Msa0511880:intron | 50.0% | |
| GCCACGTGGCACAAAATGAT+TGG | + | chr3_4:61568119-61568138 | Msa0511880:intron | 50.0% | |
| ! | CCCAATCATTTTGTGCCACG+TGG | - | chr3_4:61567248-61567267 | None:intergenic | 50.0% |
| CACAAAATGATTGGGCCACG+TGG | + | chr3_4:61568128-61568147 | Msa0511880:intron | 50.0% | |
| ! | TGTAGGGTTGTGGAAAGCGT+AGG | + | chr3_4:61568756-61568775 | Msa0511880:intron | 50.0% |
| ! | GTAGGGTTGTGGAAAGCGTA+GGG | + | chr3_4:61568757-61568776 | Msa0511880:intron | 50.0% |
| GCCCTATCAGGAGGAATTTG+TGG | - | chr3_4:61569038-61569057 | None:intergenic | 50.0% | |
| CTCGGTTGTGGTGTATCAAC+AGG | + | chr3_4:61569065-61569084 | Msa0511880:CDS | 50.0% | |
| ! | AGGGCTTTGTAACATGAGGG+TGG | - | chr3_4:61569591-61569610 | None:intergenic | 50.0% |
| AAGTTTCAAGAGGGTGGACC+TGG | - | chr3_4:61569993-61570012 | None:intergenic | 50.0% | |
| GAAGGACCTCACTAGAACTG+AGG | - | chr3_4:61570592-61570611 | None:intergenic | 50.0% | |
| GGGTTTGAGTCCTCCATATG+TGG | - | chr3_4:61570639-61570658 | None:intergenic | 50.0% | |
| GCTGCTGTTGCAAGGAAACC+TGG | + | chr3_4:61566530-61566549 | Msa0511880:intron | 55.0% | |
| !! | GTGTTGCTGGGTTCTGGGTT+TGG | + | chr3_4:61568010-61568029 | Msa0511880:intron | 55.0% |
| !! | GTTGCTGGGTTCTGGGTTTG+GGG | + | chr3_4:61568012-61568031 | Msa0511880:intron | 55.0% |
| ! | GGTTGTGGAAAGCGTAGGGA+AGG | + | chr3_4:61568761-61568780 | Msa0511880:CDS | 55.0% |
| ! | AGAAGGCATGCCCTATCAGG+AGG | - | chr3_4:61569047-61569066 | None:intergenic | 55.0% |
| CCTGATAGGGCATGCCTTCT+CGG | + | chr3_4:61569047-61569066 | Msa0511880:CDS | 55.0% | |
| !! | TTGTAGGGGTAGGTGCTGCT+TGG | + | chr3_4:61569264-61569283 | Msa0511880:intron | 55.0% |
| TGCTTGGAGAACAGCAGGTG+TGG | + | chr3_4:61569280-61569299 | Msa0511880:CDS | 55.0% | |
| GCAGAGGGAGCTAGACTTTG+TGG | + | chr3_4:61569454-61569473 | Msa0511880:CDS | 55.0% | |
| !! | GGGGAATTGTGCCACTTCTG+AGG | + | chr3_4:61569849-61569868 | Msa0511880:intron | 55.0% |
| !!! | GTTTTAGGGGTGGACAAGCC+AGG | + | chr3_4:61570554-61570573 | Msa0511880:CDS | 55.0% |
| CTGAGGCTTATCCTAGCTCC+TGG | - | chr3_4:61570575-61570594 | None:intergenic | 55.0% | |
| ! | CCGAGAAGGCATGCCCTATC+AGG | - | chr3_4:61569050-61569069 | None:intergenic | 60.0% |
| AGGGCATGCCTTCTCGGTTG+TGG | + | chr3_4:61569053-61569072 | Msa0511880:CDS | 60.0% | |
| !! | GGTGCTGCTTGGAGAACAGC+AGG | + | chr3_4:61569275-61569294 | Msa0511880:CDS | 60.0% |
| AGAACAGCAGGTGTGGAGCC+AGG | + | chr3_4:61569287-61569306 | Msa0511880:CDS | 60.0% | |
| GAACAGCAGGTGTGGAGCCA+GGG | + | chr3_4:61569288-61569307 | Msa0511880:CDS | 60.0% | |
| GGGTGGACAAGCCAGGAGCT+AGG | + | chr3_4:61570561-61570580 | Msa0511880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 61566282 | 61571013 | 61566282 | ID=Msa0511880;Name=Msa0511880 |
| chr3_4 | mRNA | 61566282 | 61571013 | 61566282 | ID=Msa0511880-mRNA-1;Parent=Msa0511880;Name=Msa0511880-mRNA-1;_AED=0.14;_eAED=0.14;_QI=29|0.77|0.7|1|1|1|10|56|392 |
| chr3_4 | exon | 61566282 | 61566377 | 61566282 | ID=Msa0511880-mRNA-1:exon:15009;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61566531 | 61566667 | 61566531 | ID=Msa0511880-mRNA-1:exon:15010;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61566796 | 61566842 | 61566796 | ID=Msa0511880-mRNA-1:exon:15011;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61568761 | 61569086 | 61568761 | ID=Msa0511880-mRNA-1:exon:15012;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61569270 | 61569352 | 61569270 | ID=Msa0511880-mRNA-1:exon:15013;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61569451 | 61569526 | 61569451 | ID=Msa0511880-mRNA-1:exon:15014;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61569929 | 61569993 | 61569929 | ID=Msa0511880-mRNA-1:exon:15015;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61570157 | 61570252 | 61570157 | ID=Msa0511880-mRNA-1:exon:15016;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61570536 | 61570700 | 61570536 | ID=Msa0511880-mRNA-1:exon:15017;Parent=Msa0511880-mRNA-1 |
| chr3_4 | exon | 61570841 | 61571013 | 61570841 | ID=Msa0511880-mRNA-1:exon:15018;Parent=Msa0511880-mRNA-1 |
| chr3_4 | five_prime_UTR | 61566282 | 61566310 | 61566282 | ID=Msa0511880-mRNA-1:five_prime_utr;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61566311 | 61566377 | 61566311 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61566531 | 61566667 | 61566531 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61566796 | 61566842 | 61566796 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61568761 | 61569086 | 61568761 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61569270 | 61569352 | 61569270 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61569451 | 61569526 | 61569451 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61569929 | 61569993 | 61569929 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61570157 | 61570252 | 61570157 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61570536 | 61570700 | 61570536 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | CDS | 61570841 | 61570957 | 61570841 | ID=Msa0511880-mRNA-1:cds;Parent=Msa0511880-mRNA-1 |
| chr3_4 | three_prime_UTR | 61570958 | 61571013 | 61570958 | ID=Msa0511880-mRNA-1:three_prime_utr;Parent=Msa0511880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
