AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741240 MtrunA17_Chr5g0445861 50.096 519 148 10 1 504 1 423 4.57e-122 368
Msa0741240 MtrunA17_Chr5g0445961 43.191 470 182 10 4 456 4 405 8.31e-90 289
Msa0741240 MtrunA17_Chr5g0445881 43.860 342 156 4 289 599 133 469 6.26e-57 199
Msa0741240 MtrunA17_Chr5g0445881 38.723 235 86 7 1 211 1 201 2.27e-23 103
Msa0741240 MtrunA17_Chr5g0445831 36.680 518 205 15 1 504 1 409 6.05e-53 187
Msa0741240 MtrunA17_Chr5g0445771 38.424 406 147 9 264 598 130 503 4.18e-45 167
Msa0741240 MtrunA17_Chr5g0445771 42.553 282 94 6 3 271 1 227 7.09e-38 147
Msa0741240 MtrunA17_Chr5g0445811 52.381 168 75 1 264 431 79 241 5.20e-38 142
Msa0741240 MtrunA17_Chr5g0445811 32.234 273 78 8 1 267 1 172 4.08e-14 73.2
Msa0741240 MtrunA17_Chr5g0446171 37.727 220 75 6 4 191 4 193 1.13e-25 106
Msa0741240 MtrunA17_Chr5g0445871 42.105 209 90 5 416 599 4 206 3.47e-25 103
Msa0741240 MtrunA17_Chr5g0446181 41.463 205 94 6 1 197 1 187 1.35e-23 103
Msa0741240 MtrunA17_Chr5g0446181 36.111 288 103 13 348 600 130 371 3.76e-21 95.9
Msa0741240 MtrunA17_Chr5g0434161 62.857 70 26 0 254 323 18 87 3.18e-19 83.2
Msa0741240 MtrunA17_Chr5g0434161 52.439 82 36 1 226 304 18 99 1.20e-13 67.4
Msa0741240 MtrunA17_Chr5g0434161 52.055 73 32 1 282 354 18 87 1.46e-11 61.2
Msa0741240 MtrunA17_Chr1g0185261 39.884 173 69 5 306 477 54 192 2.78e-18 84.3
Msa0741240 MtrunA17_Chr5g0446231 45.000 120 53 3 36 154 2 109 3.49e-17 85.1
Msa0741240 MtrunA17_Chr5g0446191 46.154 117 50 3 39 154 20 124 4.34e-16 81.6
Msa0741240 MtrunA17_Chr5g0445821 56.522 92 35 3 508 598 19 106 4.01e-14 68.9
Msa0741240 MtrunA17_Chr5g0413371 40.336 119 51 3 31 149 2 100 1.50e-11 67.4
Msa0741240 MtrunA17_Chr5g0445801 55.319 94 37 2 505 598 21 109 2.23e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 107 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGACCCAGGTTCGATTT+TGG 0.197878 5_1:-60779958 None:intergenic
CATGAAAAGAAGGCCATTTC+TGG 0.199522 5_1:+60783024 Msa0741240:CDS
TGAATTAGAGTTGGAAGTTT+TGG 0.214205 5_1:+60780928 Msa0741240:CDS
GGAGAAACTTGCTAGGTTAC+AGG 0.283073 5_1:+60780217 Msa0741240:CDS
CGGTGTGTGGAAGATGAAAA+TGG 0.304803 5_1:-60779820 None:intergenic
GGAAACGTTGAACAACAATT+TGG 0.315230 5_1:+60781081 Msa0741240:CDS
GAGGAGCGAAAAGATAAAAT+TGG 0.340269 5_1:+60781120 Msa0741240:CDS
TGAGTTAGAATCTGAGGTTT+TGG 0.346512 5_1:+60780835 Msa0741240:CDS
TGAACTAGAGCATCGAGTTT+TGG 0.347114 5_1:+60780667 Msa0741240:CDS
GTTTCAAGAGGAGCTTGAAT+TGG 0.356825 5_1:+60780196 Msa0741240:CDS
CGAGCCTCCTGCTGATACTA+TGG 0.369008 5_1:+60781285 Msa0741240:CDS
TGAGTTAGAGCTTCAAGTTT+TGG 0.375044 5_1:+60780583 Msa0741240:CDS
TGACAATGTTGAACGTGTTT+TGG 0.375700 5_1:+60780103 Msa0741240:CDS
AGTAACACTTCAACGAGATC+TGG 0.378949 5_1:-60780056 None:intergenic
GTCTCGATAATCTTACTATA+AGG 0.383145 5_1:+60783214 Msa0741240:CDS
CTTCATGGCAATTCCAGAAA+TGG 0.400165 5_1:-60783037 None:intergenic
CTTCCTTCAACTTCTTAACT+TGG 0.404271 5_1:-60780523 None:intergenic
TTTACAGCACAATGTTGAAA+TGG 0.412766 5_1:+60780163 Msa0741240:CDS
GGAGAATGATAAAACTGCTT+TGG 0.414411 5_1:+60781027 Msa0741240:CDS
ATGATCATGATCATTCTTCA+TGG 0.416992 5_1:-60783052 None:intergenic
TCGAAGCAAGGTTCGAGTAT+TGG 0.418664 5_1:+60781006 Msa0741240:CDS
TTGAAGAAAGTGAAAGTAGC+TGG 0.420289 5_1:+60780314 Msa0741240:CDS
AAAGAGGAACATTGAGTTGA+GGG 0.429427 5_1:+60780373 Msa0741240:CDS
GAGTCTTTAAACACAAAGTT+CGG 0.431070 5_1:+60781175 Msa0741240:CDS
AATAGCCAAGTTTGAAAATG+AGG 0.436374 5_1:+60783107 Msa0741240:CDS
GATTGAAAATGTCAAATTGA+AGG 0.436713 5_1:+60781060 Msa0741240:CDS
TTAGCTGATAGAGACACTAT+TGG 0.438282 5_1:+60780467 Msa0741240:CDS
TCAGGAAGTTGAAGGATAAG+TGG 0.440433 5_1:+60780861 Msa0741240:CDS
TGGGTTGAATGATCATGATA+AGG 0.441407 5_1:-60779938 None:intergenic
TGAAGAAGTTGAAGGGGAAG+TGG 0.443788 5_1:+60780954 Msa0741240:CDS
GTCCTCAGGTGCAAAACAAC+GGG 0.448627 5_1:+60781389 Msa0741240:CDS
AATGATAAAACTGCTTTGGC+TGG 0.449815 5_1:+60781031 Msa0741240:CDS
AAAATGGGTTGATGCTGTTA+AGG 0.456479 5_1:-60779853 None:intergenic
TTTGGAGTTCAGGAAGTTGA+AGG 0.456891 5_1:+60780853 Msa0741240:CDS
TTCTGTAGAGAAAGATAAAG+AGG 0.476033 5_1:+60781315 Msa0741240:CDS
TCATCTCTAACAAGAATCAC+AGG 0.478957 5_1:-60779993 None:intergenic
CTGTTGATGTTCTGAGAAAG+AGG 0.481826 5_1:+60780357 Msa0741240:CDS
GAAGCTAAAGGTGCACCATC+AGG 0.484062 5_1:+60781436 Msa0741240:CDS
TGTGCTGTAAATGTAGAATC+TGG 0.488371 5_1:-60780151 None:intergenic
GTTAAGAAGTTGAAGGAAGA+TGG 0.495084 5_1:+60780527 Msa0741240:CDS
CAAGCTAGCTGCCAGTCCTC+AGG 0.495740 5_1:+60781375 Msa0741240:CDS
AACAAGAATCACAGGGTTGG+TGG 0.496938 5_1:-60779985 None:intergenic
ATCAGCTAAACTAGTTATCT+CGG 0.497069 5_1:-60780453 None:intergenic
ACTATATAAATGTTATAGCC+TGG 0.501764 5_1:-60783310 None:intergenic
GAAGAAGTTGAAGGGGAAGT+GGG 0.503194 5_1:+60780955 Msa0741240:CDS
GTGCCAAGTTAAGAAGTTGA+AGG 0.503543 5_1:+60780520 Msa0741240:CDS
GCCAAGTTTGAAAATGAGGT+TGG 0.511460 5_1:+60783111 Msa0741240:CDS
AACTATTAGCTAAGGTAACC+AGG 0.514879 5_1:+60783292 Msa0741240:CDS
AGACGAAGAAGAAGAAGTGG+AGG 0.519095 5_1:-60783172 None:intergenic
AGACGAGAAGCTCAAGGTTG+AGG 0.521486 5_1:+60781144 Msa0741240:CDS
GCATGAAAGAGTTGCAAGGT+TGG 0.521848 5_1:+60781204 Msa0741240:CDS
AGAAGACGAAGAAGAAGAAG+TGG 0.523173 5_1:-60783175 None:intergenic
AACGAATGGTGAATTAGAGT+TGG 0.523751 5_1:+60780919 Msa0741240:CDS
AAAGTGAAAGTAGCTGGGTT+AGG 0.525794 5_1:+60780320 Msa0741240:CDS
ATTCAACCCAAAATCGAACC+TGG 0.527062 5_1:+60779951 Msa0741240:CDS
GAATTATGAGTTAGAATCTG+AGG 0.528199 5_1:+60780829 Msa0741240:CDS
TGTTGATGTGCTTCGAAGCA+AGG 0.528265 5_1:+60780994 Msa0741240:CDS
ACTTGCTAGGTTACAGGCTG+AGG 0.533572 5_1:+60780223 Msa0741240:CDS
TTGGGATTGAAGAAGTTGAA+GGG 0.535102 5_1:+60780947 Msa0741240:CDS
TTAATGAGTGTAGATACCTC+TGG 0.537571 5_1:+60781244 Msa0741240:CDS
ACACACACTGATCAACATCT+TGG 0.542653 5_1:-60782990 None:intergenic
ATCTACACTCATTAAAACTT+CGG 0.544129 5_1:-60781236 None:intergenic
TTGAATTGGAGAAACTTGCT+AGG 0.544441 5_1:+60780210 Msa0741240:CDS
AAGTTGTGAAGCTCGGTTGA+AGG 0.545324 5_1:+60780427 Msa0741240:CDS
TTTGGGATTGAAGAAGTTGA+AGG 0.545894 5_1:+60780946 Msa0741240:CDS
AGTGTCCTGAAGCTGAAAGA+AGG 0.546843 5_1:-60779777 None:intergenic
GTAACACTTCAACGAGATCT+GGG 0.548255 5_1:-60780055 None:intergenic
TGAGGAAGGTAAAAGAGAGA+AGG 0.548951 5_1:+60780403 Msa0741240:CDS
GCAGTTGACGAGCATGGAGT+TGG 0.554671 5_1:-60783075 None:intergenic
TCGAGAGGTCCATGAAAAGA+AGG 0.555169 5_1:+60783014 Msa0741240:CDS
TCAACAACCATAGTATCAGC+AGG 0.558053 5_1:-60781292 None:intergenic
GGTGTGTGGAAGATGAAAAT+GGG 0.559834 5_1:-60779819 None:intergenic
TAATCTTAAACTATTAGCTA+AGG 0.561694 5_1:+60783284 Msa0741240:CDS
TGATGCTGTTAAGGAAAAGA+TGG 0.565414 5_1:-60779844 None:intergenic
TTGTTAGAGTCTGAAGCTAA+AGG 0.569033 5_1:+60781424 Msa0741240:CDS
GTTTGAAAATGAGGTTGGCA+TGG 0.573659 5_1:+60783116 Msa0741240:CDS
AGAAGGAAAGTTGTGAAGCT+CGG 0.573889 5_1:+60780420 Msa0741240:CDS
TGGGATTGAAGAAGTTGAAG+GGG 0.574518 5_1:+60780948 Msa0741240:CDS
TTGAGGGAAATGTGTGAGGA+AGG 0.576476 5_1:+60780389 Msa0741240:CDS
TGTTAGAGATGAAGAAGCTG+TGG 0.578329 5_1:+60780004 Msa0741240:CDS
TGAACTGCAGTTGACGAGCA+TGG 0.589481 5_1:-60783081 None:intergenic
AGGAAAAGATGGTCGGTGTG+TGG 0.591085 5_1:-60779833 None:intergenic
TGAAGAAAGTGAAAGTAGCT+GGG 0.598840 5_1:+60780315 Msa0741240:CDS
CTCTGGTGGTGGAAACGATG+AGG 0.601316 5_1:+60781261 Msa0741240:CDS
AGTGTAGATACCTCTGGTGG+TGG 0.602833 5_1:+60781250 Msa0741240:CDS
GGAGAAACAAAAGTTTCAAG+AGG 0.606040 5_1:+60780184 Msa0741240:CDS
TGGCAACTATAAGTGAGTTG+AGG 0.607774 5_1:+60781101 Msa0741240:CDS
TCTGGTGGTGGAAACGATGA+GGG 0.614819 5_1:+60781262 Msa0741240:CDS
AGTCCTCAGGTGCAAAACAA+CGG 0.617401 5_1:+60781388 Msa0741240:CDS
GAAAGAGGAACATTGAGTTG+AGG 0.620134 5_1:+60780372 Msa0741240:CDS
TCTAACAAGAATCACAGGGT+TGG 0.623457 5_1:-60779988 None:intergenic
ATTGGCAGACGAGAAGCTCA+AGG 0.630706 5_1:+60781138 Msa0741240:CDS
TGAAAGAGTTGCAAGGTTGG+AGG 0.631396 5_1:+60781207 Msa0741240:CDS
AGATGACAACACACTTAATG+TGG 0.632788 5_1:+60780796 Msa0741240:CDS
TTCAACCCAAAATCGAACCT+GGG 0.633225 5_1:+60779952 Msa0741240:CDS
AATTGCATGAAAGAGTTGCA+AGG 0.633271 5_1:+60781200 Msa0741240:CDS
CATCTCTAACAAGAATCACA+GGG 0.641894 5_1:-60779992 None:intergenic
ATCGAGACACGATAAATCAA+CGG 0.643640 5_1:-60783199 None:intergenic
CTCATCGTTTCCACCACCAG+AGG 0.650565 5_1:-60781260 None:intergenic
TTGGTGGAAGATGATGACCC+AGG 0.663433 5_1:-60779969 None:intergenic
GCAAAACAACGGGAGCAAAG+AGG 0.667911 5_1:+60781399 Msa0741240:CDS
GTTGTGCTAAACAAAACGAA+TGG 0.682170 5_1:+60780905 Msa0741240:CDS
TGAGTTGAGGGAAATGTGTG+AGG 0.685982 5_1:+60780385 Msa0741240:CDS
TGATCAGTGTGTGTCTCGAG+AGG 0.696182 5_1:+60782999 Msa0741240:CDS
GCTGTTAAGGAAAAGATGGT+CGG 0.720324 5_1:-60779840 None:intergenic
ACAACCATAGTATCAGCAGG+AGG 0.723572 5_1:-60781289 None:intergenic
ATGAGTGTAGATACCTCTGG+TGG 0.724549 5_1:+60781247 Msa0741240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAAAAGAGTTTTTTTT+AGG - chr5_1:60779896-60779915 None:intergenic 15.0%
!!! TTATCTATTTTATTAAAGCA+AGG + chr5_1:60781602-60781621 Msa0741240:intron 15.0%
!! AAAATTGATGAAAAATGTAA+TGG - chr5_1:60782438-60782457 None:intergenic 15.0%
!!! AAAATGAGTTTTGAGAAAAT+GGG - chr5_1:60779871-60779890 None:intergenic 20.0%
!!! TTTTTTACCTATAACTTTTG+AGG + chr5_1:60782122-60782141 Msa0741240:intron 20.0%
!!! TTTTTACCTATAACTTTTGA+GGG + chr5_1:60782123-60782142 Msa0741240:intron 20.0%
!! AAGAAAAAAAAACTTCATCA+AGG - chr5_1:60782239-60782258 None:intergenic 20.0%
!!! TTTGTTTGTTTTTTGTTTTC+TGG - chr5_1:60782262-60782281 None:intergenic 20.0%
!! CTTATAATCATGTTTATCTA+TGG - chr5_1:60782740-60782759 None:intergenic 20.0%
!! TAATCTTAAACTATTAGCTA+AGG + chr5_1:60783284-60783303 Msa0741240:CDS 20.0%
!!! GAAAATGAGTTTTGAGAAAA+TGG - chr5_1:60779872-60779891 None:intergenic 25.0%
! ATCATGATAAGGCTTAAAAA+TGG - chr5_1:60779930-60779949 None:intergenic 25.0%
! TAAGAAAGTGAAAAAACTAG+AGG + chr5_1:60780274-60780293 Msa0741240:CDS 25.0%
!! TTTGGAGTTGAACAAAAAAA+AGG + chr5_1:60780685-60780704 Msa0741240:CDS 25.0%
!!! TTTTAGAGTTGAAGGAAAAA+AGG + chr5_1:60780768-60780787 Msa0741240:CDS 25.0%
!! TTTAGAGTTGAAGGAAAAAA+GGG + chr5_1:60780769-60780788 Msa0741240:CDS 25.0%
! GATTGAAAATGTCAAATTGA+AGG + chr5_1:60781060-60781079 Msa0741240:CDS 25.0%
! ATCTACACTCATTAAAACTT+CGG - chr5_1:60781239-60781258 None:intergenic 25.0%
! TAATATTCAATATGCGTGAT+CGG + chr5_1:60781529-60781548 Msa0741240:intron 25.0%
! ATAGATAAATCACTGTTGTA+GGG - chr5_1:60781590-60781609 None:intergenic 25.0%
! AATAGATAAATCACTGTTGT+AGG - chr5_1:60781591-60781610 None:intergenic 25.0%
!! GTTTTATAACTTCTTTGAAC+TGG + chr5_1:60781635-60781654 Msa0741240:intron 25.0%
! TAATCGATTGTATTTCAATG+CGG - chr5_1:60781686-60781705 None:intergenic 25.0%
! TATGTAACATGGAATAAAGA+TGG - chr5_1:60781836-60781855 None:intergenic 25.0%
!! GAAGTGGATAAAATTGTTTT+AGG + chr5_1:60781908-60781927 Msa0741240:intron 25.0%
!! TTTTACCTATAACTTTTGAG+GGG + chr5_1:60782124-60782143 Msa0741240:intron 25.0%
! AAAAACTTCATCAAGGTATA+AGG - chr5_1:60782232-60782251 None:intergenic 25.0%
!!! GGTATCAACATATTTTTTCA+TGG - chr5_1:60782417-60782436 None:intergenic 25.0%
! ATATGATGTTTAGACTTAAC+AGG + chr5_1:60782508-60782527 Msa0741240:intron 25.0%
! AAACATGATTATAAGATGTG+TGG + chr5_1:60782745-60782764 Msa0741240:intron 25.0%
GAAAGAAGGAAAAATGAATG+AGG - chr5_1:60779766-60779785 None:intergenic 30.0%
AGGCTTAAAAATGGAAACTT+TGG - chr5_1:60779921-60779940 None:intergenic 30.0%
TTTACAGCACAATGTTGAAA+TGG + chr5_1:60780163-60780182 Msa0741240:CDS 30.0%
AAGTGAAAAAACTAGAGGAA+CGG + chr5_1:60780279-60780298 Msa0741240:CDS 30.0%
ATCAGCTAAACTAGTTATCT+CGG - chr5_1:60780456-60780475 None:intergenic 30.0%
!!! TTTTGGTGTTGAACGAAAAA+AGG + chr5_1:60780600-60780619 Msa0741240:CDS 30.0%
!! TTTGGTGTTGAACGAAAAAA+GGG + chr5_1:60780601-60780620 Msa0741240:CDS 30.0%
! ACAATTTTGTTGATGTGCTA+AGG + chr5_1:60780633-60780652 Msa0741240:CDS 30.0%
GAATTATGAGTTAGAATCTG+AGG + chr5_1:60780829-60780848 Msa0741240:CDS 30.0%
! TGAATTAGAGTTGGAAGTTT+TGG + chr5_1:60780928-60780947 Msa0741240:CDS 30.0%
! GAATTAGAGTTGGAAGTTTT+GGG + chr5_1:60780929-60780948 Msa0741240:CDS 30.0%
GAGTCTTTAAACACAAAGTT+CGG + chr5_1:60781175-60781194 Msa0741240:CDS 30.0%
TTCTGTAGAGAAAGATAAAG+AGG + chr5_1:60781315-60781334 Msa0741240:CDS 30.0%
TACATAATTTCCAAACCTGA+TGG - chr5_1:60781454-60781473 None:intergenic 30.0%
CAGAAAATGCATATCTCTAT+AGG - chr5_1:60781491-60781510 None:intergenic 30.0%
TAATTGGTTAGAAGATTGCT+AGG + chr5_1:60781557-60781576 Msa0741240:intron 30.0%
! ATACAATCGATTAGTCATCA+TGG + chr5_1:60781693-60781712 Msa0741240:intron 30.0%
ATTCCTATGGAAATAAGAAG+TGG + chr5_1:60781892-60781911 Msa0741240:intron 30.0%
! TATCCACTTCTTATTTCCAT+AGG - chr5_1:60781898-60781917 None:intergenic 30.0%
TTTGCAAGAATAGAGAGTTT+AGG - chr5_1:60781967-60781986 None:intergenic 30.0%
!! TTTGTTTTCCGAATTTTAGC+AGG + chr5_1:60782008-60782027 Msa0741240:intron 30.0%
!! TTGTTTTCCGAATTTTAGCA+GGG + chr5_1:60782009-60782028 Msa0741240:intron 30.0%
TGTATTCTGTTCAGATTTGT+AGG + chr5_1:60782093-60782112 Msa0741240:intron 30.0%
GTATTCTGTTCAGATTTGTA+GGG + chr5_1:60782094-60782113 Msa0741240:intron 30.0%
TATAGCCATAGAAACTGATT+AGG + chr5_1:60782325-60782344 Msa0741240:intron 30.0%
! GGCTATCATTTTCTAACTAA+TGG - chr5_1:60782396-60782415 None:intergenic 30.0%
! TTTGAAATTATTGCACTGGA+TGG - chr5_1:60782461-60782480 None:intergenic 30.0%
! CTTGTTTGAAATTATTGCAC+TGG - chr5_1:60782465-60782484 None:intergenic 30.0%
TGATATGACATTAACGATGT+TGG + chr5_1:60782657-60782676 Msa0741240:intron 30.0%
GATATGACATTAACGATGTT+GGG + chr5_1:60782658-60782677 Msa0741240:intron 30.0%
AAGCAAACACTTGGAATATA+AGG - chr5_1:60782902-60782921 None:intergenic 30.0%
ATAATACTCAAGCAAACACT+TGG - chr5_1:60782911-60782930 None:intergenic 30.0%
ATGATCATGATCATTCTTCA+TGG - chr5_1:60783055-60783074 None:intergenic 30.0%
AATAGCCAAGTTTGAAAATG+AGG + chr5_1:60783107-60783126 Msa0741240:CDS 30.0%
GTCTCGATAATCTTACTATA+AGG + chr5_1:60783214-60783233 Msa0741240:CDS 30.0%
! TTTTTCCTTCTTTCAGCTTC+AGG + chr5_1:60779772-60779791 Msa0741240:five_prime_UTR 35.0%
TGATGCTGTTAAGGAAAAGA+TGG - chr5_1:60779847-60779866 None:intergenic 35.0%
!! AAAATGGGTTGATGCTGTTA+AGG - chr5_1:60779856-60779875 None:intergenic 35.0%
! TGGGTTGAATGATCATGATA+AGG - chr5_1:60779941-60779960 None:intergenic 35.0%
CATCTCTAACAAGAATCACA+GGG - chr5_1:60779995-60780014 None:intergenic 35.0%
TCATCTCTAACAAGAATCAC+AGG - chr5_1:60779996-60780015 None:intergenic 35.0%
! TGACAATGTTGAACGTGTTT+TGG + chr5_1:60780103-60780122 Msa0741240:CDS 35.0%
TGTGCTGTAAATGTAGAATC+TGG - chr5_1:60780154-60780173 None:intergenic 35.0%
GGAGAAACAAAAGTTTCAAG+AGG + chr5_1:60780184-60780203 Msa0741240:CDS 35.0%
! TTGAATTGGAGAAACTTGCT+AGG + chr5_1:60780210-60780229 Msa0741240:CDS 35.0%
TTGAAGAAAGTGAAAGTAGC+TGG + chr5_1:60780314-60780333 Msa0741240:CDS 35.0%
TGAAGAAAGTGAAAGTAGCT+GGG + chr5_1:60780315-60780334 Msa0741240:CDS 35.0%
!! AAAGAGGAACATTGAGTTGA+GGG + chr5_1:60780373-60780392 Msa0741240:CDS 35.0%
TTAGCTGATAGAGACACTAT+TGG + chr5_1:60780467-60780486 Msa0741240:CDS 35.0%
CTATTGGAGAGCTTAAAAAG+AGG + chr5_1:60780483-60780502 Msa0741240:CDS 35.0%
CTTCCTTCAACTTCTTAACT+TGG - chr5_1:60780526-60780545 None:intergenic 35.0%
GTTAAGAAGTTGAAGGAAGA+TGG + chr5_1:60780527-60780546 Msa0741240:CDS 35.0%
!! TGAGTTAGAGCTTCAAGTTT+TGG + chr5_1:60780583-60780602 Msa0741240:CDS 35.0%
!!! GCATGAAGTTTTAGAGTTGA+AGG + chr5_1:60780760-60780779 Msa0741240:CDS 35.0%
AGATGACAACACACTTAATG+TGG + chr5_1:60780796-60780815 Msa0741240:CDS 35.0%
!! TGAGTTAGAATCTGAGGTTT+TGG + chr5_1:60780835-60780854 Msa0741240:CDS 35.0%
GTTGTGCTAAACAAAACGAA+TGG + chr5_1:60780905-60780924 Msa0741240:CDS 35.0%
AACGAATGGTGAATTAGAGT+TGG + chr5_1:60780919-60780938 Msa0741240:CDS 35.0%
! TTTGGGATTGAAGAAGTTGA+AGG + chr5_1:60780946-60780965 Msa0741240:CDS 35.0%
TTGGGATTGAAGAAGTTGAA+GGG + chr5_1:60780947-60780966 Msa0741240:CDS 35.0%
GGAGAATGATAAAACTGCTT+TGG + chr5_1:60781027-60781046 Msa0741240:CDS 35.0%
AATGATAAAACTGCTTTGGC+TGG + chr5_1:60781031-60781050 Msa0741240:CDS 35.0%
GGAAACGTTGAACAACAATT+TGG + chr5_1:60781081-60781100 Msa0741240:CDS 35.0%
GAGGAGCGAAAAGATAAAAT+TGG + chr5_1:60781120-60781139 Msa0741240:CDS 35.0%
AATTGCATGAAAGAGTTGCA+AGG + chr5_1:60781200-60781219 Msa0741240:CDS 35.0%
TTAATGAGTGTAGATACCTC+TGG + chr5_1:60781244-60781263 Msa0741240:CDS 35.0%
! TTGTTAGAGTCTGAAGCTAA+AGG + chr5_1:60781424-60781443 Msa0741240:CDS 35.0%
TGCGTGATCGGATAAATAAT+TGG + chr5_1:60781541-60781560 Msa0741240:intron 35.0%
ATAACTTCTTTGAACTGGTG+AGG + chr5_1:60781640-60781659 Msa0741240:intron 35.0%
AGATAAACTCAATTAGCACG+AGG + chr5_1:60781742-60781761 Msa0741240:intron 35.0%
CAATTAGCACGAGGATATTA+TGG + chr5_1:60781751-60781770 Msa0741240:intron 35.0%
ATATTATGGTCCTCTCTGTA+TGG + chr5_1:60781765-60781784 Msa0741240:intron 35.0%
AATTCACTTTCCATACAGAG+AGG - chr5_1:60781778-60781797 None:intergenic 35.0%
! AAGATGGACTCAAGAAAAGA+AGG - chr5_1:60781820-60781839 None:intergenic 35.0%
TTAGCTGGATTTGATTCCTA+TGG + chr5_1:60781879-60781898 Msa0741240:intron 35.0%
TCTATTCTTGCAAAGATGCA+TGG + chr5_1:60781973-60781992 Msa0741240:intron 35.0%
CTATTCTTGCAAAGATGCAT+GGG + chr5_1:60781974-60781993 Msa0741240:intron 35.0%
AATAGTGCCCTGCTAAAATT+CGG - chr5_1:60782019-60782038 None:intergenic 35.0%
!! AGTTCAGCTCTTTTATTTCG+AGG + chr5_1:60782058-60782077 Msa0741240:intron 35.0%
AAGAACCCCTCAAAAGTTAT+AGG - chr5_1:60782132-60782151 None:intergenic 35.0%
! TGGTTTGTCTGAAACTGATT+AGG + chr5_1:60782302-60782321 Msa0741240:intron 35.0%
TGCTACCTAATCAGTTTCTA+TGG - chr5_1:60782333-60782352 None:intergenic 35.0%
CTAAATGTAGGCTATTTGCT+TGG - chr5_1:60782537-60782556 None:intergenic 35.0%
CACATCGTATAGCTAAATGT+AGG - chr5_1:60782549-60782568 None:intergenic 35.0%
ACATTTAGCTATACGATGTG+TGG + chr5_1:60782549-60782568 Msa0741240:intron 35.0%
GAAATGTGTGAAAAAGGTAG+TGG - chr5_1:60782604-60782623 None:intergenic 35.0%
TGTGACGAAATGTGTGAAAA+AGG - chr5_1:60782610-60782629 None:intergenic 35.0%
! TGTTAGGACTGTTTTCTCTT+TGG + chr5_1:60782694-60782713 Msa0741240:intron 35.0%
CCAATGAATATACTGCTAGT+AGG - chr5_1:60782863-60782882 None:intergenic 35.0%
CCTACTAGCAGTATATTCAT+TGG + chr5_1:60782860-60782879 Msa0741240:intron 35.0%
ATCGAGACACGATAAATCAA+CGG - chr5_1:60783202-60783221 None:intergenic 35.0%
!!! CTTTTTTGCTTGTGATGTCA+TGG - chr5_1:60783241-60783260 None:intergenic 35.0%
AACTATTAGCTAAGGTAACC+AGG + chr5_1:60783292-60783311 Msa0741240:CDS 35.0%
GGTGTGTGGAAGATGAAAAT+GGG - chr5_1:60779822-60779841 None:intergenic 40.0%
GCTGTTAAGGAAAAGATGGT+CGG - chr5_1:60779843-60779862 None:intergenic 40.0%
ATTCAACCCAAAATCGAACC+TGG + chr5_1:60779951-60779970 Msa0741240:CDS 40.0%
TTCAACCCAAAATCGAACCT+GGG + chr5_1:60779952-60779971 Msa0741240:CDS 40.0%
TCTAACAAGAATCACAGGGT+TGG - chr5_1:60779991-60780010 None:intergenic 40.0%
TGTTAGAGATGAAGAAGCTG+TGG + chr5_1:60780004-60780023 Msa0741240:CDS 40.0%
GTAACACTTCAACGAGATCT+GGG - chr5_1:60780058-60780077 None:intergenic 40.0%
AGTAACACTTCAACGAGATC+TGG - chr5_1:60780059-60780078 None:intergenic 40.0%
GTTTCAAGAGGAGCTTGAAT+TGG + chr5_1:60780196-60780215 Msa0741240:CDS 40.0%
AAAGTGAAAGTAGCTGGGTT+AGG + chr5_1:60780320-60780339 Msa0741240:CDS 40.0%
!! CTGTTGATGTTCTGAGAAAG+AGG + chr5_1:60780357-60780376 Msa0741240:CDS 40.0%
! GAAAGAGGAACATTGAGTTG+AGG + chr5_1:60780372-60780391 Msa0741240:CDS 40.0%
TGAGGAAGGTAAAAGAGAGA+AGG + chr5_1:60780403-60780422 Msa0741240:CDS 40.0%
AGAAGGAAAGTTGTGAAGCT+CGG + chr5_1:60780420-60780439 Msa0741240:CDS 40.0%
GTGCCAAGTTAAGAAGTTGA+AGG + chr5_1:60780520-60780539 Msa0741240:CDS 40.0%
!!! TGAACTAGAGCATCGAGTTT+TGG + chr5_1:60780667-60780686 Msa0741240:CDS 40.0%
AGAGTTGAAGGAAAAAAGGG+TGG + chr5_1:60780772-60780791 Msa0741240:CDS 40.0%
GAGTTGAAGGAAAAAAGGGT+GGG + chr5_1:60780773-60780792 Msa0741240:CDS 40.0%
!!! AATCTGAGGTTTTGGAGTTC+AGG + chr5_1:60780843-60780862 Msa0741240:CDS 40.0%
! TTTGGAGTTCAGGAAGTTGA+AGG + chr5_1:60780853-60780872 Msa0741240:CDS 40.0%
TCAGGAAGTTGAAGGATAAG+TGG + chr5_1:60780861-60780880 Msa0741240:CDS 40.0%
TGGGATTGAAGAAGTTGAAG+GGG + chr5_1:60780948-60780967 Msa0741240:CDS 40.0%
TGGCAACTATAAGTGAGTTG+AGG + chr5_1:60781101-60781120 Msa0741240:CDS 40.0%
TCAACAACCATAGTATCAGC+AGG - chr5_1:60781295-60781314 None:intergenic 40.0%
GATTGTATTTCAATGCGGTC+TGG - chr5_1:60781681-60781700 None:intergenic 40.0%
! AAAGAGAGCATAGCTTGGTT+GGG - chr5_1:60781860-60781879 None:intergenic 40.0%
! AAAAGAGAGCATAGCTTGGT+TGG - chr5_1:60781861-60781880 None:intergenic 40.0%
! AGCTAAAAGAGAGCATAGCT+TGG - chr5_1:60781865-60781884 None:intergenic 40.0%
! AAGCTATGCTCTCTTTTAGC+TGG + chr5_1:60781864-60781883 Msa0741240:intron 40.0%
TGAGTGGTGAAATTTGGCAT+TGG - chr5_1:60782362-60782381 None:intergenic 40.0%
CTTCAGTGAGTGGTGAAATT+TGG - chr5_1:60782368-60782387 None:intergenic 40.0%
AATTTCACCACTCACTGAAG+AGG + chr5_1:60782368-60782387 Msa0741240:intron 40.0%
! GGTAGTGGTTTACATGCAAT+GGG - chr5_1:60782589-60782608 None:intergenic 40.0%
! AGGTAGTGGTTTACATGCAA+TGG - chr5_1:60782590-60782609 None:intergenic 40.0%
! TTACTTTAAGAGCCAGAAGC+TGG + chr5_1:60782817-60782836 Msa0741240:intron 40.0%
TTCATGGAAAATCCAGCTTC+TGG - chr5_1:60782832-60782851 None:intergenic 40.0%
AATATACTGCTAGTAGGCTC+AGG - chr5_1:60782857-60782876 None:intergenic 40.0%
ACACACACTGATCAACATCT+TGG - chr5_1:60782993-60783012 None:intergenic 40.0%
! CAGAAATGGCCTTCTTTTCA+TGG - chr5_1:60783026-60783045 None:intergenic 40.0%
CATGAAAAGAAGGCCATTTC+TGG + chr5_1:60783024-60783043 Msa0741240:CDS 40.0%
CTTCATGGCAATTCCAGAAA+TGG - chr5_1:60783040-60783059 None:intergenic 40.0%
GCCAAGTTTGAAAATGAGGT+TGG + chr5_1:60783111-60783130 Msa0741240:CDS 40.0%
! GCCAACCTCATTTTCAAACT+TGG - chr5_1:60783115-60783134 None:intergenic 40.0%
GTTTGAAAATGAGGTTGGCA+TGG + chr5_1:60783116-60783135 Msa0741240:CDS 40.0%
AGAAGACGAAGAAGAAGAAG+TGG - chr5_1:60783178-60783197 None:intergenic 40.0%
AGTGTCCTGAAGCTGAAAGA+AGG - chr5_1:60779780-60779799 None:intergenic 45.0%
CGGTGTGTGGAAGATGAAAA+TGG - chr5_1:60779823-60779842 None:intergenic 45.0%
! GATGACCCAGGTTCGATTTT+GGG - chr5_1:60779960-60779979 None:intergenic 45.0%
! TGATGACCCAGGTTCGATTT+TGG - chr5_1:60779961-60779980 None:intergenic 45.0%
AACAAGAATCACAGGGTTGG+TGG - chr5_1:60779988-60780007 None:intergenic 45.0%
!! GGAGAAACTTGCTAGGTTAC+AGG + chr5_1:60780217-60780236 Msa0741240:CDS 45.0%
! TGAGTTGAGGGAAATGTGTG+AGG + chr5_1:60780385-60780404 Msa0741240:CDS 45.0%
TTGAGGGAAATGTGTGAGGA+AGG + chr5_1:60780389-60780408 Msa0741240:CDS 45.0%
AAGTTGTGAAGCTCGGTTGA+AGG + chr5_1:60780427-60780446 Msa0741240:CDS 45.0%
! GGTGTTGAACGAAAAAAGGG+TGG + chr5_1:60780604-60780623 Msa0741240:CDS 45.0%
TGAAGAAGTTGAAGGGGAAG+TGG + chr5_1:60780954-60780973 Msa0741240:CDS 45.0%
GAAGAAGTTGAAGGGGAAGT+GGG + chr5_1:60780955-60780974 Msa0741240:CDS 45.0%
TGTTGATGTGCTTCGAAGCA+AGG + chr5_1:60780994-60781013 Msa0741240:CDS 45.0%
TCGAAGCAAGGTTCGAGTAT+TGG + chr5_1:60781006-60781025 Msa0741240:CDS 45.0%
GCATGAAAGAGTTGCAAGGT+TGG + chr5_1:60781204-60781223 Msa0741240:CDS 45.0%
TGAAAGAGTTGCAAGGTTGG+AGG + chr5_1:60781207-60781226 Msa0741240:CDS 45.0%
ATGAGTGTAGATACCTCTGG+TGG + chr5_1:60781247-60781266 Msa0741240:CDS 45.0%
ACAACCATAGTATCAGCAGG+AGG - chr5_1:60781292-60781311 None:intergenic 45.0%
AGTCCTCAGGTGCAAAACAA+CGG + chr5_1:60781388-60781407 Msa0741240:CDS 45.0%
! TAAAGGTGCACCATCAGGTT+TGG + chr5_1:60781441-60781460 Msa0741240:intron 45.0%
CTTGGTTGGGCTATGTAACA+TGG - chr5_1:60781847-60781866 None:intergenic 45.0%
AGCAGCTAAGAACACTCGTT+TGG + chr5_1:60782282-60782301 Msa0741240:intron 45.0%
GGGCACTTATCTTACGTGTT+AGG + chr5_1:60782678-60782697 Msa0741240:intron 45.0%
CTAGTAGGCTCAGGATTTCA+TGG - chr5_1:60782848-60782867 None:intergenic 45.0%
TCGAGAGGTCCATGAAAAGA+AGG + chr5_1:60783014-60783033 Msa0741240:CDS 45.0%
AGACGAAGAAGAAGAAGTGG+AGG - chr5_1:60783175-60783194 None:intergenic 45.0%
AGGAAAAGATGGTCGGTGTG+TGG - chr5_1:60779836-60779855 None:intergenic 50.0%
TTGGTGGAAGATGATGACCC+AGG - chr5_1:60779972-60779991 None:intergenic 50.0%
! ACTTGCTAGGTTACAGGCTG+AGG + chr5_1:60780223-60780242 Msa0741240:CDS 50.0%
ATTGGCAGACGAGAAGCTCA+AGG + chr5_1:60781138-60781157 Msa0741240:CDS 50.0%
AGACGAGAAGCTCAAGGTTG+AGG + chr5_1:60781144-60781163 Msa0741240:CDS 50.0%
AGTGTAGATACCTCTGGTGG+TGG + chr5_1:60781250-60781269 Msa0741240:CDS 50.0%
!! TCTGGTGGTGGAAACGATGA+GGG + chr5_1:60781262-60781281 Msa0741240:CDS 50.0%
!! GTTGTTTTGCACCTGAGGAC+TGG - chr5_1:60781389-60781408 None:intergenic 50.0%
GTCCTCAGGTGCAAAACAAC+GGG + chr5_1:60781389-60781408 Msa0741240:CDS 50.0%
GCAAAACAACGGGAGCAAAG+AGG + chr5_1:60781399-60781418 Msa0741240:CDS 50.0%
! GAAGCTAAAGGTGCACCATC+AGG + chr5_1:60781436-60781455 Msa0741240:CDS 50.0%
AATGGTGCCTCTTCAGTGAG+TGG - chr5_1:60782378-60782397 None:intergenic 50.0%
TGATCAGTGTGTGTCTCGAG+AGG + chr5_1:60782999-60783018 Msa0741240:CDS 50.0%
TGAACTGCAGTTGACGAGCA+TGG - chr5_1:60783084-60783103 None:intergenic 50.0%
CTCATCGTTTCCACCACCAG+AGG - chr5_1:60781263-60781282 None:intergenic 55.0%
!! CTCTGGTGGTGGAAACGATG+AGG + chr5_1:60781261-60781280 Msa0741240:CDS 55.0%
CGAGCCTCCTGCTGATACTA+TGG + chr5_1:60781285-60781304 Msa0741240:CDS 55.0%
!! CTCCCGTTGTTTTGCACCTG+AGG - chr5_1:60781394-60781413 None:intergenic 55.0%
GCAGTTGACGAGCATGGAGT+TGG - chr5_1:60783078-60783097 None:intergenic 55.0%
CAAGCTAGCTGCCAGTCCTC+AGG + chr5_1:60781375-60781394 Msa0741240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 60779763 60783320 60779763 ID=Msa0741240;Name=Msa0741240
chr5_1 mRNA 60779763 60783320 60779763 ID=Msa0741240-mRNA-1;Parent=Msa0741240;Name=Msa0741240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=182|1|0.5|1|1|1|2|0|615
chr5_1 exon 60779763 60781457 60779763 ID=Msa0741240-mRNA-1:exon:17548;Parent=Msa0741240-mRNA-1
chr5_1 exon 60782986 60783320 60782986 ID=Msa0741240-mRNA-1:exon:17549;Parent=Msa0741240-mRNA-1
chr5_1 five_prime_UTR 60779763 60779944 60779763 ID=Msa0741240-mRNA-1:five_prime_utr;Parent=Msa0741240-mRNA-1
chr5_1 CDS 60779945 60781457 60779945 ID=Msa0741240-mRNA-1:cds;Parent=Msa0741240-mRNA-1
chr5_1 CDS 60782986 60783320 60782986 ID=Msa0741240-mRNA-1:cds;Parent=Msa0741240-mRNA-1
Gene Sequence

>Msa0741240

ATGATCATTCAACCCAAAATCGAACCTGGGTCATCATCTTCCACCAACCCTGTGATTCTTGTTAGAGATGAAGAAGCTGTGGAAACTCAAAACTTAGAAGCTAAGAGTATCCCAGATCTCGTTGAAGTGTTACTCAGAGCTTATAAGTTAGAAGATTTTGACAATGTTGAACGTGTTTTGGTGCGTAGAGATGTTGAACTCAGAAACCAGATTCTACATTTACAGCACAATGTTGAAATGGAGAAACAAAAGTTTCAAGAGGAGCTTGAATTGGAGAAACTTGCTAGGTTACAGGCTGAGGAAGATTTTAAGCAAAGAGAAGAAGTTTGTAAGAAAGTGAAAAAACTAGAGGAACGGTATGAAGCTCTGTTGAAGAAAGTGAAAGTAGCTGGGTTAGGTGCTGATAGTGATACTGTTGATGTTCTGAGAAAGAGGAACATTGAGTTGAGGGAAATGTGTGAGGAAGGTAAAAGAGAGAAGGAAAGTTGTGAAGCTCGGTTGAAGGAAGCCGAGATAACTAGTTTAGCTGATAGAGACACTATTGGAGAGCTTAAAAAGAGGAACATTGAGTTAGAGTGCCAAGTTAAGAAGTTGAAGGAAGATGGCAATGTTGTTGATGTGCTCAGAAAAAAGAATGATGAGTTAGAGCTTCAAGTTTTGGTGTTGAACGAAAAAAGGGTGGAAGATGACAATTTTGTTGATGTGCTAAGGAAAAAGAATGATGAACTAGAGCATCGAGTTTTGGAGTTGAACAAAAAAAAGGTTGAAGATAACAATGCAGTTGATTTGTTAAAAGCAAAGAACATTGAGTTAGAGCATGAAGTTTTAGAGTTGAAGGAAAAAAGGGTGGGAGATGACAACACACTTAATGTGGTAAAAGCAAAGAATTATGAGTTAGAATCTGAGGTTTTGGAGTTCAGGAAGTTGAAGGATAAGTGGATTGATGATAGCAACGCTCTTGTTGTGCTAAACAAAACGAATGGTGAATTAGAGTTGGAAGTTTTGGGATTGAAGAAGTTGAAGGGGAAGTGGGTTGCTGATAGCAACACTGTTGATGTGCTTCGAAGCAAGGTTCGAGTATTGGAGAATGATAAAACTGCTTTGGCTGGAATTCAGATTGAAAATGTCAAATTGAAGGAAACGTTGAACAACAATTTGGCAACTATAAGTGAGTTGAGGAGCGAAAAGATAAAATTGGCAGACGAGAAGCTCAAGGTTGAGGCATTACTTGAGTCTTTAAACACAAAGTTCGGAGAATTGCATGAAAGAGTTGCAAGGTTGGAGGATGATTCCGAAGTTTTAATGAGTGTAGATACCTCTGGTGGTGGAAACGATGAGGGCGAGCCTCCTGCTGATACTATGGTTGTTGATTCTGTAGAGAAAGATAAAGAGGATGTTTGCGATAGTGAGTTCGAAAATGACACTATTGACAAGCTAGCTGCCAGTCCTCAGGTGCAAAACAACGGGAGCAAAGAGGCATTGTTAGAGTCTGAAGCTAAAGGTGCACCATCAGATGACCAAGATGTTGATCAGTGTGTGTCTCGAGAGGTCCATGAAAAGAAGGCCATTTCTGGAATTGCCATGAAGAATGATCATGATCATCCAACTCCATGCTCGTCAACTGCAGTTCAACAAATAGCCAAGTTTGAAAATGAGGTTGGCATGGTCAAAAGAAAATTTTCTTTGACTTGCAGTGAATCCTCCACTTCTTCTTCTTCGTCTTCTTCCGTTGATTTATCGTGTCTCGATAATCTTACTATAAGGTCCATGACATCACAAGCAAAAAAGAAAAAAAATGTAGTCAAACAATCTAATCTTAAACTATTAGCTAAGGTAACCAGGCTATAA

Protein sequence

>Msa0741240

MIIQPKIEPGSSSSTNPVILVRDEEAVETQNLEAKSIPDLVEVLLRAYKLEDFDNVERVLVRRDVELRNQILHLQHNVEMEKQKFQEELELEKLARLQAEEDFKQREEVCKKVKKLEERYEALLKKVKVAGLGADSDTVDVLRKRNIELREMCEEGKREKESCEARLKEAEITSLADRDTIGELKKRNIELECQVKKLKEDGNVVDVLRKKNDELELQVLVLNEKRVEDDNFVDVLRKKNDELEHRVLELNKKKVEDNNAVDLLKAKNIELEHEVLELKEKRVGDDNTLNVVKAKNYELESEVLEFRKLKDKWIDDSNALVVLNKTNGELELEVLGLKKLKGKWVADSNTVDVLRSKVRVLENDKTALAGIQIENVKLKETLNNNLATISELRSEKIKLADEKLKVEALLESLNTKFGELHERVARLEDDSEVLMSVDTSGGGNDEGEPPADTMVVDSVEKDKEDVCDSEFENDTIDKLAASPQVQNNGSKEALLESEAKGAPSDDQDVDQCVSREVHEKKAISGIAMKNDHDHPTPCSSTAVQQIAKFENEVGMVKRKFSLTCSESSTSSSSSSSVDLSCLDNLTIRSMTSQAKKKKNVVKQSNLKLLAKVTRL*