AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861870 MtrunA17_Chr5g0445861 50.096 519 148 10 1 504 1 423 4.57e-122 368
Msa0861870 MtrunA17_Chr5g0445961 43.191 470 182 10 4 456 4 405 8.31e-90 289
Msa0861870 MtrunA17_Chr5g0445881 43.860 342 156 4 289 599 133 469 6.26e-57 199
Msa0861870 MtrunA17_Chr5g0445881 38.723 235 86 7 1 211 1 201 2.27e-23 103
Msa0861870 MtrunA17_Chr5g0445831 36.680 518 205 15 1 504 1 409 6.05e-53 187
Msa0861870 MtrunA17_Chr5g0445771 38.424 406 147 9 264 598 130 503 4.18e-45 167
Msa0861870 MtrunA17_Chr5g0445771 42.553 282 94 6 3 271 1 227 7.09e-38 147
Msa0861870 MtrunA17_Chr5g0445811 52.381 168 75 1 264 431 79 241 5.20e-38 142
Msa0861870 MtrunA17_Chr5g0445811 32.234 273 78 8 1 267 1 172 4.08e-14 73.2
Msa0861870 MtrunA17_Chr5g0446171 37.727 220 75 6 4 191 4 193 1.13e-25 106
Msa0861870 MtrunA17_Chr5g0445871 42.105 209 90 5 416 599 4 206 3.47e-25 103
Msa0861870 MtrunA17_Chr5g0446181 41.463 205 94 6 1 197 1 187 1.35e-23 103
Msa0861870 MtrunA17_Chr5g0446181 36.111 288 103 13 348 600 130 371 3.76e-21 95.9
Msa0861870 MtrunA17_Chr5g0434161 62.857 70 26 0 254 323 18 87 3.18e-19 83.2
Msa0861870 MtrunA17_Chr5g0434161 52.439 82 36 1 226 304 18 99 1.20e-13 67.4
Msa0861870 MtrunA17_Chr5g0434161 52.055 73 32 1 282 354 18 87 1.46e-11 61.2
Msa0861870 MtrunA17_Chr1g0185261 39.884 173 69 5 306 477 54 192 2.78e-18 84.3
Msa0861870 MtrunA17_Chr5g0446231 45.000 120 53 3 36 154 2 109 3.49e-17 85.1
Msa0861870 MtrunA17_Chr5g0446191 46.154 117 50 3 39 154 20 124 4.34e-16 81.6
Msa0861870 MtrunA17_Chr5g0445821 56.522 92 35 3 508 598 19 106 4.01e-14 68.9
Msa0861870 MtrunA17_Chr5g0413371 40.336 119 51 3 31 149 2 100 1.50e-11 67.4
Msa0861870 MtrunA17_Chr5g0445801 55.319 94 37 2 505 598 21 109 2.23e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 107 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGACCCAGGTTCGATTT+TGG 0.197878 5_4:-61361107 None:intergenic
CATGAAAAGAAGGCCATTTC+TGG 0.199522 5_4:+61364173 Msa0861870:CDS
TGAATTAGAGTTGGAAGTTT+TGG 0.214205 5_4:+61362077 Msa0861870:CDS
GGAGAAACTTGCTAGGTTAC+AGG 0.283073 5_4:+61361366 Msa0861870:CDS
CGGTGTGTGGAAGATGAAAA+TGG 0.304803 5_4:-61360970 None:intergenic
GGAAACGTTGAACAACAATT+TGG 0.315230 5_4:+61362230 Msa0861870:CDS
GAGGAGCGAAAAGATAAAAT+TGG 0.340269 5_4:+61362269 Msa0861870:CDS
TGAGTTAGAATCTGAGGTTT+TGG 0.346512 5_4:+61361984 Msa0861870:CDS
TGAACTAGAGCATCGAGTTT+TGG 0.347114 5_4:+61361816 Msa0861870:CDS
GTTTCAAGAGGAGCTTGAAT+TGG 0.356825 5_4:+61361345 Msa0861870:CDS
CGAGCCTCCTGCTGATACTA+TGG 0.369008 5_4:+61362434 Msa0861870:CDS
TGAGTTAGAGCTTCAAGTTT+TGG 0.375044 5_4:+61361732 Msa0861870:CDS
TGACAATGTTGAACGTGTTT+TGG 0.375700 5_4:+61361252 Msa0861870:CDS
AGTAACACTTCAACGAGATC+TGG 0.378949 5_4:-61361205 None:intergenic
GTCTCGATAATCTTACTATA+AGG 0.383145 5_4:+61364363 Msa0861870:CDS
CTTCATGGCAATTCCAGAAA+TGG 0.400165 5_4:-61364186 None:intergenic
CTTCCTTCAACTTCTTAACT+TGG 0.404271 5_4:-61361672 None:intergenic
TTTACAGCACAATGTTGAAA+TGG 0.412766 5_4:+61361312 Msa0861870:CDS
GGAGAATGATAAAACTGCTT+TGG 0.414411 5_4:+61362176 Msa0861870:CDS
ATGATCATGATCATTCTTCA+TGG 0.416992 5_4:-61364201 None:intergenic
TCGAAGCAAGGTTCGAGTAT+TGG 0.418664 5_4:+61362155 Msa0861870:CDS
TTGAAGAAAGTGAAAGTAGC+TGG 0.420289 5_4:+61361463 Msa0861870:CDS
AAAGAGGAACATTGAGTTGA+GGG 0.429427 5_4:+61361522 Msa0861870:CDS
GAGTCTTTAAACACAAAGTT+CGG 0.431070 5_4:+61362324 Msa0861870:CDS
AATAGCCAAGTTTGAAAATG+AGG 0.436374 5_4:+61364256 Msa0861870:CDS
GATTGAAAATGTCAAATTGA+AGG 0.436713 5_4:+61362209 Msa0861870:CDS
TTAGCTGATAGAGACACTAT+TGG 0.438282 5_4:+61361616 Msa0861870:CDS
TCAGGAAGTTGAAGGATAAG+TGG 0.440433 5_4:+61362010 Msa0861870:CDS
TGGGTTGAATGATCATGATA+AGG 0.441407 5_4:-61361087 None:intergenic
TGAAGAAGTTGAAGGGGAAG+TGG 0.443788 5_4:+61362103 Msa0861870:CDS
GTCCTCAGGTGCAAAACAAC+GGG 0.448627 5_4:+61362538 Msa0861870:CDS
AATGATAAAACTGCTTTGGC+TGG 0.449815 5_4:+61362180 Msa0861870:CDS
AAAATGGGTTGATGCTGTTA+AGG 0.456479 5_4:-61361003 None:intergenic
TTTGGAGTTCAGGAAGTTGA+AGG 0.456891 5_4:+61362002 Msa0861870:CDS
TTCTGTAGAGAAAGATAAAG+AGG 0.476033 5_4:+61362464 Msa0861870:CDS
TCATCTCTAACAAGAATCAC+AGG 0.478957 5_4:-61361142 None:intergenic
CTGTTGATGTTCTGAGAAAG+AGG 0.481826 5_4:+61361506 Msa0861870:CDS
GAAGCTAAAGGTGCACCATC+AGG 0.484062 5_4:+61362585 Msa0861870:CDS
TGTGCTGTAAATGTAGAATC+TGG 0.488371 5_4:-61361300 None:intergenic
GTTAAGAAGTTGAAGGAAGA+TGG 0.495084 5_4:+61361676 Msa0861870:CDS
CAAGCTAGCTGCCAGTCCTC+AGG 0.495740 5_4:+61362524 Msa0861870:CDS
AACAAGAATCACAGGGTTGG+TGG 0.496938 5_4:-61361134 None:intergenic
ATCAGCTAAACTAGTTATCT+CGG 0.497069 5_4:-61361602 None:intergenic
ACTATATAAATGTTATAGCC+TGG 0.501764 5_4:-61364459 None:intergenic
GAAGAAGTTGAAGGGGAAGT+GGG 0.503194 5_4:+61362104 Msa0861870:CDS
GTGCCAAGTTAAGAAGTTGA+AGG 0.503543 5_4:+61361669 Msa0861870:CDS
GCCAAGTTTGAAAATGAGGT+TGG 0.511460 5_4:+61364260 Msa0861870:CDS
AACTATTAGCTAAGGTAACC+AGG 0.514879 5_4:+61364441 Msa0861870:CDS
AGACGAAGAAGAAGAAGTGG+AGG 0.519095 5_4:-61364321 None:intergenic
AGACGAGAAGCTCAAGGTTG+AGG 0.521486 5_4:+61362293 Msa0861870:CDS
GCATGAAAGAGTTGCAAGGT+TGG 0.521848 5_4:+61362353 Msa0861870:CDS
AGAAGACGAAGAAGAAGAAG+TGG 0.523173 5_4:-61364324 None:intergenic
AACGAATGGTGAATTAGAGT+TGG 0.523751 5_4:+61362068 Msa0861870:CDS
AAAGTGAAAGTAGCTGGGTT+AGG 0.525794 5_4:+61361469 Msa0861870:CDS
ATTCAACCCAAAATCGAACC+TGG 0.527062 5_4:+61361100 Msa0861870:CDS
GAATTATGAGTTAGAATCTG+AGG 0.528199 5_4:+61361978 Msa0861870:CDS
TGTTGATGTGCTTCGAAGCA+AGG 0.528265 5_4:+61362143 Msa0861870:CDS
ACTTGCTAGGTTACAGGCTG+AGG 0.533572 5_4:+61361372 Msa0861870:CDS
TTGGGATTGAAGAAGTTGAA+GGG 0.535102 5_4:+61362096 Msa0861870:CDS
TTAATGAGTGTAGATACCTC+TGG 0.537571 5_4:+61362393 Msa0861870:CDS
ACACACACTGATCAACATCT+TGG 0.542653 5_4:-61364139 None:intergenic
ATCTACACTCATTAAAACTT+CGG 0.544129 5_4:-61362385 None:intergenic
TTGAATTGGAGAAACTTGCT+AGG 0.544441 5_4:+61361359 Msa0861870:CDS
AAGTTGTGAAGCTCGGTTGA+AGG 0.545324 5_4:+61361576 Msa0861870:CDS
TTTGGGATTGAAGAAGTTGA+AGG 0.545894 5_4:+61362095 Msa0861870:CDS
AGTGTCCTGAAGCTGAAAGA+AGG 0.546843 5_4:-61360927 None:intergenic
GTAACACTTCAACGAGATCT+GGG 0.548255 5_4:-61361204 None:intergenic
TGAGGAAGGTAAAAGAGAGA+AGG 0.548951 5_4:+61361552 Msa0861870:CDS
GCAGTTGACGAGCATGGAGT+TGG 0.554671 5_4:-61364224 None:intergenic
TCGAGAGGTCCATGAAAAGA+AGG 0.555169 5_4:+61364163 Msa0861870:CDS
TCAACAACCATAGTATCAGC+AGG 0.558053 5_4:-61362441 None:intergenic
GGTGTGTGGAAGATGAAAAT+GGG 0.559834 5_4:-61360969 None:intergenic
TAATCTTAAACTATTAGCTA+AGG 0.561694 5_4:+61364433 Msa0861870:CDS
TGATGCTGTTAAGGAAAAGA+TGG 0.565414 5_4:-61360994 None:intergenic
TTGTTAGAGTCTGAAGCTAA+AGG 0.569033 5_4:+61362573 Msa0861870:CDS
GTTTGAAAATGAGGTTGGCA+TGG 0.573659 5_4:+61364265 Msa0861870:CDS
AGAAGGAAAGTTGTGAAGCT+CGG 0.573889 5_4:+61361569 Msa0861870:CDS
TGGGATTGAAGAAGTTGAAG+GGG 0.574518 5_4:+61362097 Msa0861870:CDS
TTGAGGGAAATGTGTGAGGA+AGG 0.576476 5_4:+61361538 Msa0861870:CDS
TGTTAGAGATGAAGAAGCTG+TGG 0.578329 5_4:+61361153 Msa0861870:CDS
TGAACTGCAGTTGACGAGCA+TGG 0.589481 5_4:-61364230 None:intergenic
AGGAAAAGATGGTCGGTGTG+TGG 0.591085 5_4:-61360983 None:intergenic
TGAAGAAAGTGAAAGTAGCT+GGG 0.598840 5_4:+61361464 Msa0861870:CDS
CTCTGGTGGTGGAAACGATG+AGG 0.601316 5_4:+61362410 Msa0861870:CDS
AGTGTAGATACCTCTGGTGG+TGG 0.602833 5_4:+61362399 Msa0861870:CDS
GGAGAAACAAAAGTTTCAAG+AGG 0.606040 5_4:+61361333 Msa0861870:CDS
TGGCAACTATAAGTGAGTTG+AGG 0.607774 5_4:+61362250 Msa0861870:CDS
TCTGGTGGTGGAAACGATGA+GGG 0.614819 5_4:+61362411 Msa0861870:CDS
AGTCCTCAGGTGCAAAACAA+CGG 0.617401 5_4:+61362537 Msa0861870:CDS
GAAAGAGGAACATTGAGTTG+AGG 0.620134 5_4:+61361521 Msa0861870:CDS
TCTAACAAGAATCACAGGGT+TGG 0.623457 5_4:-61361137 None:intergenic
ATTGGCAGACGAGAAGCTCA+AGG 0.630706 5_4:+61362287 Msa0861870:CDS
TGAAAGAGTTGCAAGGTTGG+AGG 0.631396 5_4:+61362356 Msa0861870:CDS
AGATGACAACACACTTAATG+TGG 0.632788 5_4:+61361945 Msa0861870:CDS
TTCAACCCAAAATCGAACCT+GGG 0.633225 5_4:+61361101 Msa0861870:CDS
AATTGCATGAAAGAGTTGCA+AGG 0.633271 5_4:+61362349 Msa0861870:CDS
CATCTCTAACAAGAATCACA+GGG 0.641894 5_4:-61361141 None:intergenic
ATCGAGACACGATAAATCAA+CGG 0.643640 5_4:-61364348 None:intergenic
CTCATCGTTTCCACCACCAG+AGG 0.650565 5_4:-61362409 None:intergenic
TTGGTGGAAGATGATGACCC+AGG 0.663433 5_4:-61361118 None:intergenic
GCAAAACAACGGGAGCAAAG+AGG 0.667911 5_4:+61362548 Msa0861870:CDS
GTTGTGCTAAACAAAACGAA+TGG 0.682170 5_4:+61362054 Msa0861870:CDS
TGAGTTGAGGGAAATGTGTG+AGG 0.685982 5_4:+61361534 Msa0861870:CDS
TGATCAGTGTGTGTCTCGAG+AGG 0.696182 5_4:+61364148 Msa0861870:CDS
GCTGTTAAGGAAAAGATGGT+CGG 0.720324 5_4:-61360990 None:intergenic
ACAACCATAGTATCAGCAGG+AGG 0.723572 5_4:-61362438 None:intergenic
ATGAGTGTAGATACCTCTGG+TGG 0.724549 5_4:+61362396 Msa0861870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAAAGAGTTTTTTTT+AGG - chr5_4:61361046-61361065 None:intergenic 15.0%
!!! TTATCTATTTTATTAAAGCA+AGG + chr5_4:61362751-61362770 Msa0861870:intron 15.0%
!! AAAATTGATGAAAAATGTAA+TGG - chr5_4:61363587-61363606 None:intergenic 15.0%
!!! AAAATGAGTTTTGAGAAAAT+GGG - chr5_4:61361021-61361040 None:intergenic 20.0%
!!! TTTTTTACCTATAACTTTTG+AGG + chr5_4:61363271-61363290 Msa0861870:intron 20.0%
!!! TTTTTACCTATAACTTTTGA+GGG + chr5_4:61363272-61363291 Msa0861870:intron 20.0%
!! AAGAAAAAAAAACTTCATCA+AGG - chr5_4:61363388-61363407 None:intergenic 20.0%
!!! TTTGTTTGTTTTTTGTTTTC+TGG - chr5_4:61363411-61363430 None:intergenic 20.0%
!! CTTATAATCATGTTTATCTA+TGG - chr5_4:61363889-61363908 None:intergenic 20.0%
!! TAATCTTAAACTATTAGCTA+AGG + chr5_4:61364433-61364452 Msa0861870:CDS 20.0%
!!! GAAAATGAGTTTTGAGAAAA+TGG - chr5_4:61361022-61361041 None:intergenic 25.0%
! ATCATGATAAGGCTTAAAAA+TGG - chr5_4:61361079-61361098 None:intergenic 25.0%
! TAAGAAAGTGAAAAAACTAG+AGG + chr5_4:61361423-61361442 Msa0861870:CDS 25.0%
!! TTTGGAGTTGAACAAAAAAA+AGG + chr5_4:61361834-61361853 Msa0861870:CDS 25.0%
!!! TTTTAGAGTTGAAGGAAAAA+AGG + chr5_4:61361917-61361936 Msa0861870:CDS 25.0%
!! TTTAGAGTTGAAGGAAAAAA+GGG + chr5_4:61361918-61361937 Msa0861870:CDS 25.0%
! GATTGAAAATGTCAAATTGA+AGG + chr5_4:61362209-61362228 Msa0861870:CDS 25.0%
! ATCTACACTCATTAAAACTT+CGG - chr5_4:61362388-61362407 None:intergenic 25.0%
! TAATATTCAATATGCGTGAT+CGG + chr5_4:61362678-61362697 Msa0861870:intron 25.0%
! ATAGATAAATCACTGTTGTA+GGG - chr5_4:61362739-61362758 None:intergenic 25.0%
! AATAGATAAATCACTGTTGT+AGG - chr5_4:61362740-61362759 None:intergenic 25.0%
!! GTTTTATAACTTCTTTGAAC+TGG + chr5_4:61362784-61362803 Msa0861870:intron 25.0%
! TAATCGATTGTATTTCAATG+CGG - chr5_4:61362835-61362854 None:intergenic 25.0%
! TATGTAACATGGAATAAAGA+TGG - chr5_4:61362985-61363004 None:intergenic 25.0%
!! GAAGTGGATAAAATTGTTTT+AGG + chr5_4:61363057-61363076 Msa0861870:intron 25.0%
!! TTTTACCTATAACTTTTGAG+GGG + chr5_4:61363273-61363292 Msa0861870:intron 25.0%
! AAAAACTTCATCAAGGTATA+AGG - chr5_4:61363381-61363400 None:intergenic 25.0%
!!! GGTATCAACATATTTTTTCA+TGG - chr5_4:61363566-61363585 None:intergenic 25.0%
! ATATGATGTTTAGACTTAAC+AGG + chr5_4:61363657-61363676 Msa0861870:intron 25.0%
! AAACATGATTATAAGATGTG+TGG + chr5_4:61363894-61363913 Msa0861870:intron 25.0%
GAAAGAAGGAAAAATGAATG+AGG - chr5_4:61360916-61360935 None:intergenic 30.0%
AGGCTTAAAAATGGAAACTT+TGG - chr5_4:61361070-61361089 None:intergenic 30.0%
TTTACAGCACAATGTTGAAA+TGG + chr5_4:61361312-61361331 Msa0861870:CDS 30.0%
AAGTGAAAAAACTAGAGGAA+CGG + chr5_4:61361428-61361447 Msa0861870:CDS 30.0%
ATCAGCTAAACTAGTTATCT+CGG - chr5_4:61361605-61361624 None:intergenic 30.0%
!!! TTTTGGTGTTGAACGAAAAA+AGG + chr5_4:61361749-61361768 Msa0861870:CDS 30.0%
!! TTTGGTGTTGAACGAAAAAA+GGG + chr5_4:61361750-61361769 Msa0861870:CDS 30.0%
! ACAATTTTGTTGATGTGCTA+AGG + chr5_4:61361782-61361801 Msa0861870:CDS 30.0%
GAATTATGAGTTAGAATCTG+AGG + chr5_4:61361978-61361997 Msa0861870:CDS 30.0%
! TGAATTAGAGTTGGAAGTTT+TGG + chr5_4:61362077-61362096 Msa0861870:CDS 30.0%
! GAATTAGAGTTGGAAGTTTT+GGG + chr5_4:61362078-61362097 Msa0861870:CDS 30.0%
GAGTCTTTAAACACAAAGTT+CGG + chr5_4:61362324-61362343 Msa0861870:CDS 30.0%
TTCTGTAGAGAAAGATAAAG+AGG + chr5_4:61362464-61362483 Msa0861870:CDS 30.0%
TACATAATTTCCAAACCTGA+TGG - chr5_4:61362603-61362622 None:intergenic 30.0%
CAGAAAATGCATATCTCTAT+AGG - chr5_4:61362640-61362659 None:intergenic 30.0%
TAATTGGTTAGAAGATTGCT+AGG + chr5_4:61362706-61362725 Msa0861870:intron 30.0%
! ATACAATCGATTAGTCATCA+TGG + chr5_4:61362842-61362861 Msa0861870:intron 30.0%
ATTCCTATGGAAATAAGAAG+TGG + chr5_4:61363041-61363060 Msa0861870:intron 30.0%
! TATCCACTTCTTATTTCCAT+AGG - chr5_4:61363047-61363066 None:intergenic 30.0%
TTTGCAAGAATAGAGAGTTT+AGG - chr5_4:61363116-61363135 None:intergenic 30.0%
!! TTTGTTTTCCGAATTTTAGC+AGG + chr5_4:61363157-61363176 Msa0861870:intron 30.0%
!! TTGTTTTCCGAATTTTAGCA+GGG + chr5_4:61363158-61363177 Msa0861870:intron 30.0%
TGTATTCTGTTCAGATTTGT+AGG + chr5_4:61363242-61363261 Msa0861870:intron 30.0%
GTATTCTGTTCAGATTTGTA+GGG + chr5_4:61363243-61363262 Msa0861870:intron 30.0%
TATAGCCATAGAAACTGATT+AGG + chr5_4:61363474-61363493 Msa0861870:intron 30.0%
! GGCTATCATTTTCTAACTAA+TGG - chr5_4:61363545-61363564 None:intergenic 30.0%
! TTTGAAATTATTGCACTGGA+TGG - chr5_4:61363610-61363629 None:intergenic 30.0%
! CTTGTTTGAAATTATTGCAC+TGG - chr5_4:61363614-61363633 None:intergenic 30.0%
TGATATGACATTAACGATGT+TGG + chr5_4:61363806-61363825 Msa0861870:intron 30.0%
GATATGACATTAACGATGTT+GGG + chr5_4:61363807-61363826 Msa0861870:intron 30.0%
AAGCAAACACTTGGAATATA+AGG - chr5_4:61364051-61364070 None:intergenic 30.0%
ATAATACTCAAGCAAACACT+TGG - chr5_4:61364060-61364079 None:intergenic 30.0%
ATGATCATGATCATTCTTCA+TGG - chr5_4:61364204-61364223 None:intergenic 30.0%
AATAGCCAAGTTTGAAAATG+AGG + chr5_4:61364256-61364275 Msa0861870:CDS 30.0%
GTCTCGATAATCTTACTATA+AGG + chr5_4:61364363-61364382 Msa0861870:CDS 30.0%
! TTTTTCCTTCTTTCAGCTTC+AGG + chr5_4:61360922-61360941 Msa0861870:five_prime_UTR 35.0%
TGATGCTGTTAAGGAAAAGA+TGG - chr5_4:61360997-61361016 None:intergenic 35.0%
!! AAAATGGGTTGATGCTGTTA+AGG - chr5_4:61361006-61361025 None:intergenic 35.0%
! TGGGTTGAATGATCATGATA+AGG - chr5_4:61361090-61361109 None:intergenic 35.0%
CATCTCTAACAAGAATCACA+GGG - chr5_4:61361144-61361163 None:intergenic 35.0%
TCATCTCTAACAAGAATCAC+AGG - chr5_4:61361145-61361164 None:intergenic 35.0%
! TGACAATGTTGAACGTGTTT+TGG + chr5_4:61361252-61361271 Msa0861870:CDS 35.0%
TGTGCTGTAAATGTAGAATC+TGG - chr5_4:61361303-61361322 None:intergenic 35.0%
GGAGAAACAAAAGTTTCAAG+AGG + chr5_4:61361333-61361352 Msa0861870:CDS 35.0%
! TTGAATTGGAGAAACTTGCT+AGG + chr5_4:61361359-61361378 Msa0861870:CDS 35.0%
TTGAAGAAAGTGAAAGTAGC+TGG + chr5_4:61361463-61361482 Msa0861870:CDS 35.0%
TGAAGAAAGTGAAAGTAGCT+GGG + chr5_4:61361464-61361483 Msa0861870:CDS 35.0%
!! AAAGAGGAACATTGAGTTGA+GGG + chr5_4:61361522-61361541 Msa0861870:CDS 35.0%
TTAGCTGATAGAGACACTAT+TGG + chr5_4:61361616-61361635 Msa0861870:CDS 35.0%
CTATTGGAGAGCTTAAAAAG+AGG + chr5_4:61361632-61361651 Msa0861870:CDS 35.0%
CTTCCTTCAACTTCTTAACT+TGG - chr5_4:61361675-61361694 None:intergenic 35.0%
GTTAAGAAGTTGAAGGAAGA+TGG + chr5_4:61361676-61361695 Msa0861870:CDS 35.0%
!! TGAGTTAGAGCTTCAAGTTT+TGG + chr5_4:61361732-61361751 Msa0861870:CDS 35.0%
!!! GCATGAAGTTTTAGAGTTGA+AGG + chr5_4:61361909-61361928 Msa0861870:CDS 35.0%
AGATGACAACACACTTAATG+TGG + chr5_4:61361945-61361964 Msa0861870:CDS 35.0%
!! TGAGTTAGAATCTGAGGTTT+TGG + chr5_4:61361984-61362003 Msa0861870:CDS 35.0%
GTTGTGCTAAACAAAACGAA+TGG + chr5_4:61362054-61362073 Msa0861870:CDS 35.0%
AACGAATGGTGAATTAGAGT+TGG + chr5_4:61362068-61362087 Msa0861870:CDS 35.0%
! TTTGGGATTGAAGAAGTTGA+AGG + chr5_4:61362095-61362114 Msa0861870:CDS 35.0%
TTGGGATTGAAGAAGTTGAA+GGG + chr5_4:61362096-61362115 Msa0861870:CDS 35.0%
GGAGAATGATAAAACTGCTT+TGG + chr5_4:61362176-61362195 Msa0861870:CDS 35.0%
AATGATAAAACTGCTTTGGC+TGG + chr5_4:61362180-61362199 Msa0861870:CDS 35.0%
GGAAACGTTGAACAACAATT+TGG + chr5_4:61362230-61362249 Msa0861870:CDS 35.0%
GAGGAGCGAAAAGATAAAAT+TGG + chr5_4:61362269-61362288 Msa0861870:CDS 35.0%
AATTGCATGAAAGAGTTGCA+AGG + chr5_4:61362349-61362368 Msa0861870:CDS 35.0%
TTAATGAGTGTAGATACCTC+TGG + chr5_4:61362393-61362412 Msa0861870:CDS 35.0%
! TTGTTAGAGTCTGAAGCTAA+AGG + chr5_4:61362573-61362592 Msa0861870:CDS 35.0%
TGCGTGATCGGATAAATAAT+TGG + chr5_4:61362690-61362709 Msa0861870:intron 35.0%
ATAACTTCTTTGAACTGGTG+AGG + chr5_4:61362789-61362808 Msa0861870:intron 35.0%
AGATAAACTCAATTAGCACG+AGG + chr5_4:61362891-61362910 Msa0861870:intron 35.0%
CAATTAGCACGAGGATATTA+TGG + chr5_4:61362900-61362919 Msa0861870:intron 35.0%
ATATTATGGTCCTCTCTGTA+TGG + chr5_4:61362914-61362933 Msa0861870:intron 35.0%
AATTCACTTTCCATACAGAG+AGG - chr5_4:61362927-61362946 None:intergenic 35.0%
! AAGATGGACTCAAGAAAAGA+AGG - chr5_4:61362969-61362988 None:intergenic 35.0%
TTAGCTGGATTTGATTCCTA+TGG + chr5_4:61363028-61363047 Msa0861870:intron 35.0%
TCTATTCTTGCAAAGATGCA+TGG + chr5_4:61363122-61363141 Msa0861870:intron 35.0%
CTATTCTTGCAAAGATGCAT+GGG + chr5_4:61363123-61363142 Msa0861870:intron 35.0%
AATAGTGCCCTGCTAAAATT+CGG - chr5_4:61363168-61363187 None:intergenic 35.0%
!! AGTTCAGCTCTTTTATTTCG+AGG + chr5_4:61363207-61363226 Msa0861870:intron 35.0%
AAGAACCCCTCAAAAGTTAT+AGG - chr5_4:61363281-61363300 None:intergenic 35.0%
! TGGTTTGTCTGAAACTGATT+AGG + chr5_4:61363451-61363470 Msa0861870:intron 35.0%
TGCTACCTAATCAGTTTCTA+TGG - chr5_4:61363482-61363501 None:intergenic 35.0%
CTAAATGTAGGCTATTTGCT+TGG - chr5_4:61363686-61363705 None:intergenic 35.0%
CACATCGTATAGCTAAATGT+AGG - chr5_4:61363698-61363717 None:intergenic 35.0%
ACATTTAGCTATACGATGTG+TGG + chr5_4:61363698-61363717 Msa0861870:intron 35.0%
GAAATGTGTGAAAAAGGTAG+TGG - chr5_4:61363753-61363772 None:intergenic 35.0%
TGTGACGAAATGTGTGAAAA+AGG - chr5_4:61363759-61363778 None:intergenic 35.0%
! TGTTAGGACTGTTTTCTCTT+TGG + chr5_4:61363843-61363862 Msa0861870:intron 35.0%
CCAATGAATATACTGCTAGT+AGG - chr5_4:61364012-61364031 None:intergenic 35.0%
CCTACTAGCAGTATATTCAT+TGG + chr5_4:61364009-61364028 Msa0861870:intron 35.0%
ATCGAGACACGATAAATCAA+CGG - chr5_4:61364351-61364370 None:intergenic 35.0%
!!! CTTTTTTGCTTGTGATGTCA+TGG - chr5_4:61364390-61364409 None:intergenic 35.0%
AACTATTAGCTAAGGTAACC+AGG + chr5_4:61364441-61364460 Msa0861870:CDS 35.0%
GGTGTGTGGAAGATGAAAAT+GGG - chr5_4:61360972-61360991 None:intergenic 40.0%
GCTGTTAAGGAAAAGATGGT+CGG - chr5_4:61360993-61361012 None:intergenic 40.0%
ATTCAACCCAAAATCGAACC+TGG + chr5_4:61361100-61361119 Msa0861870:CDS 40.0%
TTCAACCCAAAATCGAACCT+GGG + chr5_4:61361101-61361120 Msa0861870:CDS 40.0%
TCTAACAAGAATCACAGGGT+TGG - chr5_4:61361140-61361159 None:intergenic 40.0%
TGTTAGAGATGAAGAAGCTG+TGG + chr5_4:61361153-61361172 Msa0861870:CDS 40.0%
GTAACACTTCAACGAGATCT+GGG - chr5_4:61361207-61361226 None:intergenic 40.0%
AGTAACACTTCAACGAGATC+TGG - chr5_4:61361208-61361227 None:intergenic 40.0%
GTTTCAAGAGGAGCTTGAAT+TGG + chr5_4:61361345-61361364 Msa0861870:CDS 40.0%
AAAGTGAAAGTAGCTGGGTT+AGG + chr5_4:61361469-61361488 Msa0861870:CDS 40.0%
!! CTGTTGATGTTCTGAGAAAG+AGG + chr5_4:61361506-61361525 Msa0861870:CDS 40.0%
! GAAAGAGGAACATTGAGTTG+AGG + chr5_4:61361521-61361540 Msa0861870:CDS 40.0%
TGAGGAAGGTAAAAGAGAGA+AGG + chr5_4:61361552-61361571 Msa0861870:CDS 40.0%
AGAAGGAAAGTTGTGAAGCT+CGG + chr5_4:61361569-61361588 Msa0861870:CDS 40.0%
GTGCCAAGTTAAGAAGTTGA+AGG + chr5_4:61361669-61361688 Msa0861870:CDS 40.0%
!!! TGAACTAGAGCATCGAGTTT+TGG + chr5_4:61361816-61361835 Msa0861870:CDS 40.0%
AGAGTTGAAGGAAAAAAGGG+TGG + chr5_4:61361921-61361940 Msa0861870:CDS 40.0%
GAGTTGAAGGAAAAAAGGGT+GGG + chr5_4:61361922-61361941 Msa0861870:CDS 40.0%
!!! AATCTGAGGTTTTGGAGTTC+AGG + chr5_4:61361992-61362011 Msa0861870:CDS 40.0%
! TTTGGAGTTCAGGAAGTTGA+AGG + chr5_4:61362002-61362021 Msa0861870:CDS 40.0%
TCAGGAAGTTGAAGGATAAG+TGG + chr5_4:61362010-61362029 Msa0861870:CDS 40.0%
TGGGATTGAAGAAGTTGAAG+GGG + chr5_4:61362097-61362116 Msa0861870:CDS 40.0%
TGGCAACTATAAGTGAGTTG+AGG + chr5_4:61362250-61362269 Msa0861870:CDS 40.0%
TCAACAACCATAGTATCAGC+AGG - chr5_4:61362444-61362463 None:intergenic 40.0%
GATTGTATTTCAATGCGGTC+TGG - chr5_4:61362830-61362849 None:intergenic 40.0%
! AAAGAGAGCATAGCTTGGTT+GGG - chr5_4:61363009-61363028 None:intergenic 40.0%
! AAAAGAGAGCATAGCTTGGT+TGG - chr5_4:61363010-61363029 None:intergenic 40.0%
! AGCTAAAAGAGAGCATAGCT+TGG - chr5_4:61363014-61363033 None:intergenic 40.0%
! AAGCTATGCTCTCTTTTAGC+TGG + chr5_4:61363013-61363032 Msa0861870:intron 40.0%
TGAGTGGTGAAATTTGGCAT+TGG - chr5_4:61363511-61363530 None:intergenic 40.0%
CTTCAGTGAGTGGTGAAATT+TGG - chr5_4:61363517-61363536 None:intergenic 40.0%
AATTTCACCACTCACTGAAG+AGG + chr5_4:61363517-61363536 Msa0861870:intron 40.0%
! GGTAGTGGTTTACATGCAAT+GGG - chr5_4:61363738-61363757 None:intergenic 40.0%
! AGGTAGTGGTTTACATGCAA+TGG - chr5_4:61363739-61363758 None:intergenic 40.0%
! TTACTTTAAGAGCCAGAAGC+TGG + chr5_4:61363966-61363985 Msa0861870:intron 40.0%
TTCATGGAAAATCCAGCTTC+TGG - chr5_4:61363981-61364000 None:intergenic 40.0%
AATATACTGCTAGTAGGCTC+AGG - chr5_4:61364006-61364025 None:intergenic 40.0%
ACACACACTGATCAACATCT+TGG - chr5_4:61364142-61364161 None:intergenic 40.0%
! CAGAAATGGCCTTCTTTTCA+TGG - chr5_4:61364175-61364194 None:intergenic 40.0%
CATGAAAAGAAGGCCATTTC+TGG + chr5_4:61364173-61364192 Msa0861870:CDS 40.0%
CTTCATGGCAATTCCAGAAA+TGG - chr5_4:61364189-61364208 None:intergenic 40.0%
GCCAAGTTTGAAAATGAGGT+TGG + chr5_4:61364260-61364279 Msa0861870:CDS 40.0%
! GCCAACCTCATTTTCAAACT+TGG - chr5_4:61364264-61364283 None:intergenic 40.0%
GTTTGAAAATGAGGTTGGCA+TGG + chr5_4:61364265-61364284 Msa0861870:CDS 40.0%
AGAAGACGAAGAAGAAGAAG+TGG - chr5_4:61364327-61364346 None:intergenic 40.0%
AGTGTCCTGAAGCTGAAAGA+AGG - chr5_4:61360930-61360949 None:intergenic 45.0%
CGGTGTGTGGAAGATGAAAA+TGG - chr5_4:61360973-61360992 None:intergenic 45.0%
! GATGACCCAGGTTCGATTTT+GGG - chr5_4:61361109-61361128 None:intergenic 45.0%
! TGATGACCCAGGTTCGATTT+TGG - chr5_4:61361110-61361129 None:intergenic 45.0%
AACAAGAATCACAGGGTTGG+TGG - chr5_4:61361137-61361156 None:intergenic 45.0%
!! GGAGAAACTTGCTAGGTTAC+AGG + chr5_4:61361366-61361385 Msa0861870:CDS 45.0%
! TGAGTTGAGGGAAATGTGTG+AGG + chr5_4:61361534-61361553 Msa0861870:CDS 45.0%
TTGAGGGAAATGTGTGAGGA+AGG + chr5_4:61361538-61361557 Msa0861870:CDS 45.0%
AAGTTGTGAAGCTCGGTTGA+AGG + chr5_4:61361576-61361595 Msa0861870:CDS 45.0%
! GGTGTTGAACGAAAAAAGGG+TGG + chr5_4:61361753-61361772 Msa0861870:CDS 45.0%
TGAAGAAGTTGAAGGGGAAG+TGG + chr5_4:61362103-61362122 Msa0861870:CDS 45.0%
GAAGAAGTTGAAGGGGAAGT+GGG + chr5_4:61362104-61362123 Msa0861870:CDS 45.0%
TGTTGATGTGCTTCGAAGCA+AGG + chr5_4:61362143-61362162 Msa0861870:CDS 45.0%
TCGAAGCAAGGTTCGAGTAT+TGG + chr5_4:61362155-61362174 Msa0861870:CDS 45.0%
GCATGAAAGAGTTGCAAGGT+TGG + chr5_4:61362353-61362372 Msa0861870:CDS 45.0%
TGAAAGAGTTGCAAGGTTGG+AGG + chr5_4:61362356-61362375 Msa0861870:CDS 45.0%
ATGAGTGTAGATACCTCTGG+TGG + chr5_4:61362396-61362415 Msa0861870:CDS 45.0%
ACAACCATAGTATCAGCAGG+AGG - chr5_4:61362441-61362460 None:intergenic 45.0%
AGTCCTCAGGTGCAAAACAA+CGG + chr5_4:61362537-61362556 Msa0861870:CDS 45.0%
! TAAAGGTGCACCATCAGGTT+TGG + chr5_4:61362590-61362609 Msa0861870:intron 45.0%
CTTGGTTGGGCTATGTAACA+TGG - chr5_4:61362996-61363015 None:intergenic 45.0%
AGCAGCTAAGAACACTCGTT+TGG + chr5_4:61363431-61363450 Msa0861870:intron 45.0%
GGGCACTTATCTTACGTGTT+AGG + chr5_4:61363827-61363846 Msa0861870:intron 45.0%
CTAGTAGGCTCAGGATTTCA+TGG - chr5_4:61363997-61364016 None:intergenic 45.0%
TCGAGAGGTCCATGAAAAGA+AGG + chr5_4:61364163-61364182 Msa0861870:CDS 45.0%
AGACGAAGAAGAAGAAGTGG+AGG - chr5_4:61364324-61364343 None:intergenic 45.0%
AGGAAAAGATGGTCGGTGTG+TGG - chr5_4:61360986-61361005 None:intergenic 50.0%
TTGGTGGAAGATGATGACCC+AGG - chr5_4:61361121-61361140 None:intergenic 50.0%
! ACTTGCTAGGTTACAGGCTG+AGG + chr5_4:61361372-61361391 Msa0861870:CDS 50.0%
ATTGGCAGACGAGAAGCTCA+AGG + chr5_4:61362287-61362306 Msa0861870:CDS 50.0%
AGACGAGAAGCTCAAGGTTG+AGG + chr5_4:61362293-61362312 Msa0861870:CDS 50.0%
AGTGTAGATACCTCTGGTGG+TGG + chr5_4:61362399-61362418 Msa0861870:CDS 50.0%
!! TCTGGTGGTGGAAACGATGA+GGG + chr5_4:61362411-61362430 Msa0861870:CDS 50.0%
!! GTTGTTTTGCACCTGAGGAC+TGG - chr5_4:61362538-61362557 None:intergenic 50.0%
GTCCTCAGGTGCAAAACAAC+GGG + chr5_4:61362538-61362557 Msa0861870:CDS 50.0%
GCAAAACAACGGGAGCAAAG+AGG + chr5_4:61362548-61362567 Msa0861870:CDS 50.0%
! GAAGCTAAAGGTGCACCATC+AGG + chr5_4:61362585-61362604 Msa0861870:CDS 50.0%
AATGGTGCCTCTTCAGTGAG+TGG - chr5_4:61363527-61363546 None:intergenic 50.0%
TGATCAGTGTGTGTCTCGAG+AGG + chr5_4:61364148-61364167 Msa0861870:CDS 50.0%
TGAACTGCAGTTGACGAGCA+TGG - chr5_4:61364233-61364252 None:intergenic 50.0%
CTCATCGTTTCCACCACCAG+AGG - chr5_4:61362412-61362431 None:intergenic 55.0%
!! CTCTGGTGGTGGAAACGATG+AGG + chr5_4:61362410-61362429 Msa0861870:CDS 55.0%
CGAGCCTCCTGCTGATACTA+TGG + chr5_4:61362434-61362453 Msa0861870:CDS 55.0%
!! CTCCCGTTGTTTTGCACCTG+AGG - chr5_4:61362543-61362562 None:intergenic 55.0%
GCAGTTGACGAGCATGGAGT+TGG - chr5_4:61364227-61364246 None:intergenic 55.0%
CAAGCTAGCTGCCAGTCCTC+AGG + chr5_4:61362524-61362543 Msa0861870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61360913 61364469 61360913 ID=Msa0861870;Name=Msa0861870
chr5_4 mRNA 61360913 61364469 61360913 ID=Msa0861870-mRNA-1;Parent=Msa0861870;Name=Msa0861870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=181|1|0.5|1|1|1|2|0|615
chr5_4 exon 61360913 61362606 61360913 ID=Msa0861870-mRNA-1:exon:18991;Parent=Msa0861870-mRNA-1
chr5_4 exon 61364135 61364469 61364135 ID=Msa0861870-mRNA-1:exon:18992;Parent=Msa0861870-mRNA-1
chr5_4 five_prime_UTR 61360913 61361093 61360913 ID=Msa0861870-mRNA-1:five_prime_utr;Parent=Msa0861870-mRNA-1
chr5_4 CDS 61361094 61362606 61361094 ID=Msa0861870-mRNA-1:cds;Parent=Msa0861870-mRNA-1
chr5_4 CDS 61364135 61364469 61364135 ID=Msa0861870-mRNA-1:cds;Parent=Msa0861870-mRNA-1
Gene Sequence

>Msa0861870

ATGATCATTCAACCCAAAATCGAACCTGGGTCATCATCTTCCACCAACCCTGTGATTCTTGTTAGAGATGAAGAAGCTGTGGAAACTCAAAACTTAGAAGCTAAGAGTATCCCAGATCTCGTTGAAGTGTTACTCAGAGCTTATAAGTTAGAAGATTTTGACAATGTTGAACGTGTTTTGGTGCGTAGAGATGTTGAACTCAGAAACCAGATTCTACATTTACAGCACAATGTTGAAATGGAGAAACAAAAGTTTCAAGAGGAGCTTGAATTGGAGAAACTTGCTAGGTTACAGGCTGAGGAAGATTTTAAGCAAAGAGAAGAAGTTTGTAAGAAAGTGAAAAAACTAGAGGAACGGTATGAAGCTCTGTTGAAGAAAGTGAAAGTAGCTGGGTTAGGTGCTGATAGTGATACTGTTGATGTTCTGAGAAAGAGGAACATTGAGTTGAGGGAAATGTGTGAGGAAGGTAAAAGAGAGAAGGAAAGTTGTGAAGCTCGGTTGAAGGAAGCCGAGATAACTAGTTTAGCTGATAGAGACACTATTGGAGAGCTTAAAAAGAGGAACATTGAGTTAGAGTGCCAAGTTAAGAAGTTGAAGGAAGATGGCAATGTTGTTGATGTGCTCAGAAAAAAGAATGATGAGTTAGAGCTTCAAGTTTTGGTGTTGAACGAAAAAAGGGTGGAAGATGACAATTTTGTTGATGTGCTAAGGAAAAAGAATGATGAACTAGAGCATCGAGTTTTGGAGTTGAACAAAAAAAAGGTTGAAGATAACAATGCAGTTGATTTGTTAAAAGCAAAGAACATTGAGTTAGAGCATGAAGTTTTAGAGTTGAAGGAAAAAAGGGTGGGAGATGACAACACACTTAATGTGGTAAAAGCAAAGAATTATGAGTTAGAATCTGAGGTTTTGGAGTTCAGGAAGTTGAAGGATAAGTGGATTGATGATAGCAACGCTCTTGTTGTGCTAAACAAAACGAATGGTGAATTAGAGTTGGAAGTTTTGGGATTGAAGAAGTTGAAGGGGAAGTGGGTTGCTGATAGCAACACTGTTGATGTGCTTCGAAGCAAGGTTCGAGTATTGGAGAATGATAAAACTGCTTTGGCTGGAATTCAGATTGAAAATGTCAAATTGAAGGAAACGTTGAACAACAATTTGGCAACTATAAGTGAGTTGAGGAGCGAAAAGATAAAATTGGCAGACGAGAAGCTCAAGGTTGAGGCATTACTTGAGTCTTTAAACACAAAGTTCGGAGAATTGCATGAAAGAGTTGCAAGGTTGGAGGATGATTCCGAAGTTTTAATGAGTGTAGATACCTCTGGTGGTGGAAACGATGAGGGCGAGCCTCCTGCTGATACTATGGTTGTTGATTCTGTAGAGAAAGATAAAGAGGATGTTTGCGATAGTGAGTTCGAAAATGACACTATTGACAAGCTAGCTGCCAGTCCTCAGGTGCAAAACAACGGGAGCAAAGAGGCATTGTTAGAGTCTGAAGCTAAAGGTGCACCATCAGATGACCAAGATGTTGATCAGTGTGTGTCTCGAGAGGTCCATGAAAAGAAGGCCATTTCTGGAATTGCCATGAAGAATGATCATGATCATCCAACTCCATGCTCGTCAACTGCAGTTCAACAAATAGCCAAGTTTGAAAATGAGGTTGGCATGGTCAAAAGAAAATTTTCTTTGACTTGCAGTGAATCCTCCACTTCTTCTTCTTCGTCTTCTTCCGTTGATTTATCGTGTCTCGATAATCTTACTATAAGGTCCATGACATCACAAGCAAAAAAGAAAAAAAATGTAGTCAAACAATCTAATCTTAAACTATTAGCTAAGGTAACCAGGCTATAA

Protein sequence

>Msa0861870

MIIQPKIEPGSSSSTNPVILVRDEEAVETQNLEAKSIPDLVEVLLRAYKLEDFDNVERVLVRRDVELRNQILHLQHNVEMEKQKFQEELELEKLARLQAEEDFKQREEVCKKVKKLEERYEALLKKVKVAGLGADSDTVDVLRKRNIELREMCEEGKREKESCEARLKEAEITSLADRDTIGELKKRNIELECQVKKLKEDGNVVDVLRKKNDELELQVLVLNEKRVEDDNFVDVLRKKNDELEHRVLELNKKKVEDNNAVDLLKAKNIELEHEVLELKEKRVGDDNTLNVVKAKNYELESEVLEFRKLKDKWIDDSNALVVLNKTNGELELEVLGLKKLKGKWVADSNTVDVLRSKVRVLENDKTALAGIQIENVKLKETLNNNLATISELRSEKIKLADEKLKVEALLESLNTKFGELHERVARLEDDSEVLMSVDTSGGGNDEGEPPADTMVVDSVEKDKEDVCDSEFENDTIDKLAASPQVQNNGSKEALLESEAKGAPSDDQDVDQCVSREVHEKKAISGIAMKNDHDHPTPCSSTAVQQIAKFENEVGMVKRKFSLTCSESSTSSSSSSSVDLSCLDNLTIRSMTSQAKKKKNVVKQSNLKLLAKVTRL*