Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514900 | AES72175.1 | 86.692 | 263 | 16 | 1 | 1 | 263 | 121 | 364 | 1.54e-162 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514900 | sp|F4JFU8|OBL1_ARATH | 43.529 | 255 | 129 | 2 | 22 | 261 | 177 | 431 | 3.46e-69 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514900 | G7J382 | 86.692 | 263 | 16 | 1 | 1 | 263 | 121 | 364 | 7.34e-163 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0423020 | Msa0514900 | 0.851788 | 7.066042e-61 | -8.615850e-47 |
| Msa0514900 | Msa0784290 | 0.811162 | 8.034794e-51 | -8.615850e-47 |
| Msa0514900 | Msa1173920 | 0.804084 | 2.559249e-49 | -8.615850e-47 |
| Msa0514900 | Msa1269670 | 0.800565 | 1.357530e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514900 | MtrunA17_Chr3g0123741 | 83.495 | 206 | 14 | 1 | 58 | 263 | 37 | 222 | 5.83e-123 | 352 |
| Msa0514900 | MtrunA17_Chr5g0402171 | 58.712 | 264 | 107 | 2 | 1 | 264 | 125 | 386 | 6.41e-109 | 323 |
| Msa0514900 | MtrunA17_Chr1g0153271 | 53.788 | 264 | 120 | 2 | 1 | 264 | 122 | 383 | 3.31e-93 | 282 |
| Msa0514900 | MtrunA17_Chr7g0276561 | 41.509 | 265 | 127 | 2 | 22 | 260 | 150 | 412 | 3.66e-67 | 216 |
| Msa0514900 | MtrunA17_Chr3g0123751 | 89.796 | 49 | 5 | 0 | 1 | 49 | 94 | 142 | 2.70e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514900 | AT5G67050.1 | 55.147 | 272 | 113 | 5 | 1 | 264 | 119 | 389 | 1.16e-100 | 302 |
| Msa0514900 | AT5G42930.2 | 49.813 | 267 | 129 | 2 | 1 | 264 | 121 | 385 | 2.24e-92 | 278 |
| Msa0514900 | AT5G42930.1 | 49.627 | 268 | 130 | 2 | 1 | 265 | 121 | 386 | 5.19e-91 | 277 |
| Msa0514900 | AT1G45201.2 | 49.248 | 266 | 128 | 4 | 2 | 265 | 127 | 387 | 3.27e-85 | 259 |
| Msa0514900 | AT1G45201.1 | 48.872 | 266 | 129 | 4 | 2 | 265 | 127 | 387 | 1.56e-82 | 256 |
| Msa0514900 | AT1G45201.3 | 48.872 | 266 | 129 | 4 | 2 | 265 | 152 | 412 | 2.78e-82 | 256 |
| Msa0514900 | AT1G56630.1 | 45.520 | 279 | 136 | 4 | 1 | 265 | 121 | 397 | 4.19e-78 | 244 |
| Msa0514900 | AT3G14360.1 | 43.529 | 255 | 129 | 2 | 22 | 261 | 177 | 431 | 3.52e-70 | 225 |
| Msa0514900 | AT5G18640.1 | 27.624 | 181 | 96 | 8 | 66 | 240 | 88 | 239 | 6.04e-11 | 62.4 |
| Msa0514900 | AT5G18640.3 | 27.624 | 181 | 96 | 8 | 66 | 240 | 88 | 239 | 6.04e-11 | 62.4 |
| Msa0514900 | AT5G18640.5 | 27.624 | 181 | 96 | 8 | 66 | 240 | 88 | 239 | 6.20e-11 | 62.0 |
| Msa0514900 | AT5G18640.4 | 27.624 | 181 | 96 | 8 | 66 | 240 | 100 | 251 | 6.44e-11 | 62.4 |
| Msa0514900 | AT5G18640.2 | 27.624 | 181 | 96 | 8 | 66 | 240 | 100 | 251 | 6.44e-11 | 62.4 |
Find 52 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATGGTTGGAGCTTCC+TGG | 0.307084 | 3_4:-65832910 | Msa0514900:CDS |
| AACACAATGTCCTTTATATC+AGG | 0.310096 | 3_4:+65832493 | None:intergenic |
| GCATGAGGAGTCATTTCTTT+TGG | 0.319373 | 3_4:-65832659 | Msa0514900:CDS |
| CTTCAAGGGGTTTACACATT+TGG | 0.328267 | 3_4:-65832631 | Msa0514900:CDS |
| TGATTTGTTTCAATTTGTTT+AGG | 0.333018 | 3_4:+65832823 | None:intergenic |
| GAGAAGAATTTGAAAGATAA+TGG | 0.384043 | 3_4:-65832568 | Msa0514900:CDS |
| ACATTGTGTTTAAGCACTTT+GGG | 0.384637 | 3_4:-65832480 | Msa0514900:CDS |
| TAGGTTTCCTCCTGATATAA+AGG | 0.410316 | 3_4:-65832503 | Msa0514900:CDS |
| TGGTTGGAGCTTCCTGGACT+TGG | 0.410975 | 3_4:-65832904 | Msa0514900:CDS |
| GACATTGTGTTTAAGCACTT+TGG | 0.419779 | 3_4:-65832481 | Msa0514900:CDS |
| GCTGGTTTCATGAAAGCCTT+AGG | 0.419839 | 3_4:-65832871 | Msa0514900:CDS |
| TTGTGGCATGCGGTGACTAC+TGG | 0.426475 | 3_4:-65835773 | Msa0514900:CDS |
| TAATGTTGCTTTGTTTATGA+TGG | 0.430510 | 3_4:-65836231 | Msa0514900:CDS |
| AAAGCAAAGTTTATATTGAC+TGG | 0.451591 | 3_4:-65832733 | Msa0514900:CDS |
| GTTGCTTCTTTGTAAACCTA+AGG | 0.452412 | 3_4:+65832855 | None:intergenic |
| AAACAAAGCAACATTATACT+TGG | 0.457086 | 3_4:+65836238 | None:intergenic |
| GTTATTTGATGCTGAACAAT+GGG | 0.461712 | 3_4:-65832947 | Msa0514900:CDS |
| TGAAACTTGGCAGATTATCA+AGG | 0.466744 | 3_4:-65833051 | Msa0514900:intron |
| AGTAGTAAGCTTCAAGTGTA+TGG | 0.481831 | 3_4:+65832797 | None:intergenic |
| ATAGCTATGATATTATTCCT+AGG | 0.487380 | 3_4:-65832522 | Msa0514900:CDS |
| TTTACTAAAGAAACATTTGA+AGG | 0.493912 | 3_4:-65832764 | Msa0514900:CDS |
| AACAAAGCAACATTATACTT+GGG | 0.495089 | 3_4:+65836239 | None:intergenic |
| TATGGACAAGCGAGTGGAGT+TGG | 0.502914 | 3_4:-65836285 | Msa0514900:CDS |
| ATATTGACTGGTCACAGTCT+AGG | 0.505731 | 3_4:-65832721 | Msa0514900:CDS |
| ACATTTGGTCAACCAAGAGT+TGG | 0.509933 | 3_4:-65832616 | Msa0514900:CDS |
| AATATGTCATCTCCAACTCT+TGG | 0.523235 | 3_4:+65832604 | None:intergenic |
| GGGACATAGTTGAAAATCGT+TGG | 0.527074 | 3_4:-65836172 | Msa0514900:CDS |
| AGTTATTTGATGCTGAACAA+TGG | 0.532178 | 3_4:-65832948 | Msa0514900:CDS |
| TACAAAGAAGCAACATGGGT+TGG | 0.532370 | 3_4:-65832846 | Msa0514900:CDS |
| TGACATATTTGCTCAATACA+TGG | 0.562540 | 3_4:-65832590 | Msa0514900:CDS |
| CATAGTTGAAAATCGTTGGA+AGG | 0.564748 | 3_4:-65836168 | Msa0514900:intron |
| TTACTAAAGAAACATTTGAA+GGG | 0.565367 | 3_4:-65832763 | Msa0514900:CDS |
| GAGTTGGACAAAAGCATCAA+AGG | 0.572010 | 3_4:-65836269 | Msa0514900:CDS |
| TCATGCAACATCAATATCGC+AGG | 0.573993 | 3_4:+65832676 | None:intergenic |
| TTTGATGCTGAACAATGGGC+AGG | 0.578140 | 3_4:-65832943 | Msa0514900:CDS |
| TCCTCTAAAAGTTACTATGT+AGG | 0.579783 | 3_4:+65832975 | None:intergenic |
| AGGTTTACAAAGAAGCAACA+TGG | 0.584733 | 3_4:-65832851 | Msa0514900:CDS |
| TGATAGAAACTATAATGGCA+AGG | 0.584877 | 3_4:-65832443 | Msa0514900:CDS |
| CAGGTGATTGTGATATCTCA+TGG | 0.585512 | 3_4:-65832924 | Msa0514900:CDS |
| TTTATATCAGGAGGAAACCT+AGG | 0.585879 | 3_4:+65832505 | None:intergenic |
| GGTTTACAAAGAAGCAACAT+GGG | 0.611206 | 3_4:-65832850 | Msa0514900:CDS |
| TGGTCATATGGACAAGCGAG+TGG | 0.611878 | 3_4:-65836291 | None:intergenic |
| TGATTGTGATATCTCATGGT+TGG | 0.618477 | 3_4:-65832920 | Msa0514900:CDS |
| ACAAAGCAACATTATACTTG+GGG | 0.619610 | 3_4:+65836240 | None:intergenic |
| TTGTTCAGCATCAAATAACT+CGG | 0.621021 | 3_4:+65832951 | None:intergenic |
| ACAATGTCCTTTATATCAGG+AGG | 0.632118 | 3_4:+65832496 | None:intergenic |
| AAGTTACTATGTAGGTGTCG+TGG | 0.646562 | 3_4:+65832983 | None:intergenic |
| TTGACTGGTCACAGTCTAGG+TGG | 0.654349 | 3_4:-65832718 | Msa0514900:CDS |
| TGCGATATTGATGTTGCATG+AGG | 0.662471 | 3_4:-65832674 | Msa0514900:CDS |
| GCATGCGGTGACTACTGGAA+TGG | 0.666193 | 3_4:-65835768 | Msa0514900:intron |
| TATTGCATAGATGGAAGTTG+TGG | 0.678105 | 3_4:-65835790 | Msa0514900:intron |
| TAGATGGAAGTTGTGGCATG+CGG | 0.719132 | 3_4:-65835783 | Msa0514900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAAAATTATTTTT+TGG | - | chr3_4:65834528-65834547 | Msa0514900:intron | 0.0% |
| !! | TTATAATTTACCTATATAAT+TGG | - | chr3_4:65832848-65832867 | Msa0514900:CDS | 10.0% |
| !! | ATAAAAATTAAATTTGATCA+TGG | + | chr3_4:65833417-65833436 | None:intergenic | 10.0% |
| !!! | ACAAAATAAAAGTTTTTTTT+TGG | + | chr3_4:65834503-65834522 | None:intergenic | 10.0% |
| !!! | AATTTATTTTAGTTTAAATG+CGG | - | chr3_4:65835449-65835468 | Msa0514900:intron | 10.0% |
| !! | AATATTTGTATTATGAATAC+AGG | - | chr3_4:65833069-65833088 | Msa0514900:intron | 15.0% |
| !! | TAGATTTACAAAGAAAATAT+AGG | - | chr3_4:65833787-65833806 | Msa0514900:intron | 15.0% |
| !!! | TTGCATTTTTCTTTTATTAA+GGG | + | chr3_4:65834119-65834138 | None:intergenic | 15.0% |
| !!! | TTTGCATTTTTCTTTTATTA+AGG | + | chr3_4:65834120-65834139 | None:intergenic | 15.0% |
| !!! | TTTATATCAAACTCTAAAAA+AGG | + | chr3_4:65834412-65834431 | None:intergenic | 15.0% |
| !! | GGTAAATCTAAAAAAAAAAA+AGG | + | chr3_4:65834889-65834908 | None:intergenic | 15.0% |
| !! | ATTGATACATAAAAAATCAT+GGG | + | chr3_4:65835023-65835042 | None:intergenic | 15.0% |
| !! | ATAGATATTAGAAAATATAC+GGG | + | chr3_4:65835266-65835285 | None:intergenic | 15.0% |
| !! | GATAGATATTAGAAAATATA+CGG | + | chr3_4:65835267-65835286 | None:intergenic | 15.0% |
| !!! | ATTTATTTTAGTTTAAATGC+GGG | - | chr3_4:65835450-65835469 | Msa0514900:intron | 15.0% |
| !!! | TTTTTTGATAGAAACTATAA+TGG | - | chr3_4:65836262-65836281 | Msa0514900:CDS | 15.0% |
| !!! | TTTTTTCGTTAGCATATTAT+TGG | - | chr3_4:65832663-65832682 | Msa0514900:CDS | 20.0% |
| !! | ATTAATTCATAGTTGACAAA+AGG | - | chr3_4:65832824-65832843 | Msa0514900:CDS | 20.0% |
| !!! | TTAACTTTTTGTTGATTGAA+GGG | + | chr3_4:65832989-65833008 | None:intergenic | 20.0% |
| !! | AAATACAAACAAGAATGATA+TGG | - | chr3_4:65833150-65833169 | Msa0514900:intron | 20.0% |
| !! | AATACAAACAAGAATGATAT+GGG | - | chr3_4:65833151-65833170 | Msa0514900:intron | 20.0% |
| !!! | GTCTTTTATAAAAGTGTAAA+AGG | + | chr3_4:65833590-65833609 | None:intergenic | 20.0% |
| !! | TACAAAGAAAATATAGGTAT+TGG | - | chr3_4:65833793-65833812 | Msa0514900:intron | 20.0% |
| !!! | TTTGTTTCTTGATTAGAATA+TGG | + | chr3_4:65834239-65834258 | None:intergenic | 20.0% |
| !! | GTGATTGAAAAATAGATAAA+AGG | + | chr3_4:65834856-65834875 | None:intergenic | 20.0% |
| !! | ATTGATACGTAAAAAAACAT+GGG | + | chr3_4:65834928-65834947 | None:intergenic | 20.0% |
| !! | CATTGATACATAAAAAATCA+TGG | + | chr3_4:65835024-65835043 | None:intergenic | 20.0% |
| !!! | AAGGGATAAATATTTCTAAT+TGG | + | chr3_4:65835175-65835194 | None:intergenic | 20.0% |
| !!! | ATAATAGTAAGGTTGATTAT+TGG | - | chr3_4:65835628-65835647 | Msa0514900:intron | 20.0% |
| !!! | TGATTTGTTTCAATTTGTTT+AGG | + | chr3_4:65835890-65835909 | None:intergenic | 20.0% |
| !! | TTTACTAAAGAAACATTTGA+AGG | - | chr3_4:65835946-65835965 | Msa0514900:intron | 20.0% |
| !! | TTACTAAAGAAACATTTGAA+GGG | - | chr3_4:65835947-65835966 | Msa0514900:intron | 20.0% |
| ! | AACAAAGCAACATTATACTT+GGG | + | chr3_4:65832474-65832493 | None:intergenic | 25.0% |
| ! | AAACAAAGCAACATTATACT+TGG | + | chr3_4:65832475-65832494 | None:intergenic | 25.0% |
| !!! | TAATGTTGCTTTGTTTATGA+TGG | - | chr3_4:65832479-65832498 | Msa0514900:CDS | 25.0% |
| ! | TGCTGAAAAGAAACTAATTA+AGG | + | chr3_4:65832632-65832651 | None:intergenic | 25.0% |
| !!! | AATTAGTTTCTTTTCAGCAA+AGG | - | chr3_4:65832633-65832652 | Msa0514900:CDS | 25.0% |
| !!! | ATTAGTTTCTTTTCAGCAAA+GGG | - | chr3_4:65832634-65832653 | Msa0514900:CDS | 25.0% |
| ! | ATGAATTCTCTTCTTGAAAT+CGG | - | chr3_4:65832724-65832743 | Msa0514900:CDS | 25.0% |
| !!! | GTTAACTTTTTGTTGATTGA+AGG | + | chr3_4:65832990-65833009 | None:intergenic | 25.0% |
| ! | TAGTAAAAAATATCTGCAAC+AGG | - | chr3_4:65833039-65833058 | Msa0514900:CDS | 25.0% |
| !!! | TATATGTGCGATTTTAGAAA+TGG | - | chr3_4:65833220-65833239 | Msa0514900:intron | 25.0% |
| ! | TTTATAAATGGGGAAAATTC+GGG | + | chr3_4:65833388-65833407 | None:intergenic | 25.0% |
| ! | GTTTATAAATGGGGAAAATT+CGG | + | chr3_4:65833389-65833408 | None:intergenic | 25.0% |
| ! | ATTAAATTTGATCATGGTTC+TGG | + | chr3_4:65833411-65833430 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAGAGAACAACA+TGG | + | chr3_4:65833527-65833546 | None:intergenic | 25.0% |
| ! | TTTCTCCAACAAGTAATTTA+TGG | + | chr3_4:65833696-65833715 | None:intergenic | 25.0% |
| ! | AACTTTGCATTATGTAAAGA+GGG | + | chr3_4:65833731-65833750 | None:intergenic | 25.0% |
| ! | TCATTTGATTGAGAACTTAT+AGG | - | chr3_4:65833757-65833776 | Msa0514900:intron | 25.0% |
| ! | AATGCAAACACAACAATAAT+AGG | - | chr3_4:65833910-65833929 | Msa0514900:intron | 25.0% |
| !!! | CATCTCTTAATTTTTTTTGC+AGG | + | chr3_4:65834326-65834345 | None:intergenic | 25.0% |
| ! | CATTGATACGTAAAAAAACA+TGG | + | chr3_4:65834929-65834948 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTTACGTATCAA+TGG | - | chr3_4:65834927-65834946 | Msa0514900:intron | 25.0% |
| !!! | GTATCAATGGCTATTTTTTT+CGG | - | chr3_4:65834940-65834959 | Msa0514900:intron | 25.0% |
| ! | AATCATACAAAAAAAATCGC+GGG | + | chr3_4:65835230-65835249 | None:intergenic | 25.0% |
| ! | GAATCATACAAAAAAAATCG+CGG | + | chr3_4:65835231-65835250 | None:intergenic | 25.0% |
| ! | TAAGTTGTGGAAATACATTA+GGG | - | chr3_4:65835349-65835368 | Msa0514900:intron | 25.0% |
| ! | AAAGCAAAGTTTATATTGAC+TGG | - | chr3_4:65835977-65835996 | Msa0514900:intron | 25.0% |
| ! | GAGAAGAATTTGAAAGATAA+TGG | - | chr3_4:65836142-65836161 | Msa0514900:intron | 25.0% |
| ! | ATAGCTATGATATTATTCCT+AGG | - | chr3_4:65836188-65836207 | Msa0514900:CDS | 25.0% |
| ACAAAGCAACATTATACTTG+GGG | + | chr3_4:65832473-65832492 | None:intergenic | 30.0% | |
| ! | ACGAGAATGAAGCTTTTATA+CGG | - | chr3_4:65832517-65832536 | Msa0514900:CDS | 30.0% |
| TCGTTAGCATATTATTGGTA+TGG | - | chr3_4:65832668-65832687 | Msa0514900:CDS | 30.0% | |
| AGATTTAGACCTTAAGTAAG+TGG | + | chr3_4:65832792-65832811 | None:intergenic | 30.0% | |
| !! | TTTTTGTGCTATTGCATAGA+TGG | - | chr3_4:65832911-65832930 | Msa0514900:CDS | 30.0% |
| TATGCTCAAATGATACGAAT+GGG | + | chr3_4:65833021-65833040 | None:intergenic | 30.0% | |
| CGAGACATTTATTTGTTTGA+TGG | + | chr3_4:65833306-65833325 | None:intergenic | 30.0% | |
| !! | ATGGTTCTGGTTTATAAATG+GGG | + | chr3_4:65833398-65833417 | None:intergenic | 30.0% |
| !! | CATGGTTCTGGTTTATAAAT+GGG | + | chr3_4:65833399-65833418 | None:intergenic | 30.0% |
| !! | TCATGGTTCTGGTTTATAAA+TGG | + | chr3_4:65833400-65833419 | None:intergenic | 30.0% |
| AAAGTGTAAAAGGTCAAAGT+GGG | + | chr3_4:65833580-65833599 | None:intergenic | 30.0% | |
| ! | AAAAGTGTAAAAGGTCAAAG+TGG | + | chr3_4:65833581-65833600 | None:intergenic | 30.0% |
| ! | AATGTTGTTTGATGTCATTG+TGG | - | chr3_4:65833623-65833642 | Msa0514900:intron | 30.0% |
| ! | ATGTTGTTTGATGTCATTGT+GGG | - | chr3_4:65833624-65833643 | Msa0514900:intron | 30.0% |
| CAACTTTGCATTATGTAAAG+AGG | + | chr3_4:65833732-65833751 | None:intergenic | 30.0% | |
| GTCAAAGCAATAGAAAGAAA+AGG | - | chr3_4:65833823-65833842 | Msa0514900:intron | 30.0% | |
| ! | CAAACTCTAAAAAAGGTAAG+TGG | + | chr3_4:65834405-65834424 | None:intergenic | 30.0% |
| ATGGGAGAAATATTTGTCAT+TGG | + | chr3_4:65834910-65834929 | None:intergenic | 30.0% | |
| !! | ATTTCCATAGTGGATTCAAA+GGG | - | chr3_4:65835324-65835343 | Msa0514900:intron | 30.0% |
| CTAAGTTGTGGAAATACATT+AGG | - | chr3_4:65835348-65835367 | Msa0514900:intron | 30.0% | |
| !!! | TTTTTTGTCTCTCCAAATTG+CGG | - | chr3_4:65835553-65835572 | Msa0514900:intron | 30.0% |
| GATGACAATGAATAAGTTCT+AGG | + | chr3_4:65835598-65835617 | None:intergenic | 30.0% | |
| !!! | CCTTACTATTATTTTGATCC+AGG | + | chr3_4:65835620-65835639 | None:intergenic | 30.0% |
| CCTGGATCAAAATAATAGTA+AGG | - | chr3_4:65835617-65835636 | Msa0514900:intron | 30.0% | |
| ! | TAGTAAGGTTGATTATTGGT+TGG | - | chr3_4:65835632-65835651 | Msa0514900:intron | 30.0% |
| ! | ATTGGTTGGTATTTGAAACT+TGG | - | chr3_4:65835646-65835665 | Msa0514900:intron | 30.0% |
| ! | ACCTACATAGTAACTTTTAG+AGG | - | chr3_4:65835734-65835753 | Msa0514900:intron | 30.0% |
| ! | TCCTCTAAAAGTTACTATGT+AGG | + | chr3_4:65835738-65835757 | None:intergenic | 30.0% |
| TTGTTCAGCATCAAATAACT+CGG | + | chr3_4:65835762-65835781 | None:intergenic | 30.0% | |
| AGTTATTTGATGCTGAACAA+TGG | - | chr3_4:65835762-65835781 | Msa0514900:intron | 30.0% | |
| GTTATTTGATGCTGAACAAT+GGG | - | chr3_4:65835763-65835782 | Msa0514900:intron | 30.0% | |
| TGACATATTTGCTCAATACA+TGG | - | chr3_4:65836120-65836139 | Msa0514900:intron | 30.0% | |
| AACACAATGTCCTTTATATC+AGG | + | chr3_4:65836220-65836239 | None:intergenic | 30.0% | |
| ACATTGTGTTTAAGCACTTT+GGG | - | chr3_4:65836230-65836249 | Msa0514900:CDS | 30.0% | |
| TGATAGAAACTATAATGGCA+AGG | - | chr3_4:65836267-65836286 | Msa0514900:CDS | 30.0% | |
| ! | CGAGAATGAAGCTTTTATAC+GGG | - | chr3_4:65832518-65832537 | Msa0514900:CDS | 35.0% |
| CATAGTTGAAAATCGTTGGA+AGG | - | chr3_4:65832542-65832561 | Msa0514900:CDS | 35.0% | |
| ACACATGAACCACTTACTTA+AGG | - | chr3_4:65832780-65832799 | Msa0514900:CDS | 35.0% | |
| TAGCTAGTGGCCAATTATAT+AGG | + | chr3_4:65832861-65832880 | None:intergenic | 35.0% | |
| !! | GACAGTTTACTTTTAGCTAG+TGG | + | chr3_4:65832874-65832893 | None:intergenic | 35.0% |
| TATTGCATAGATGGAAGTTG+TGG | - | chr3_4:65832920-65832939 | Msa0514900:CDS | 35.0% | |
| CTATGCTCAAATGATACGAA+TGG | + | chr3_4:65833022-65833041 | None:intergenic | 35.0% | |
| TGTAAGATTACACCACCAAT+TGG | - | chr3_4:65833351-65833370 | Msa0514900:intron | 35.0% | |
| ! | GTGTTCAATTTTCCAATTGG+TGG | + | chr3_4:65833366-65833385 | None:intergenic | 35.0% |
| ATCAGATACACAACTTTAGC+AGG | - | chr3_4:65833435-65833454 | Msa0514900:intron | 35.0% | |
| AGGAATAAAGTCATCTTCGA+AGG | + | chr3_4:65833474-65833493 | None:intergenic | 35.0% | |
| !! | GTTGTAGTGTGGTGTTTTTA+GGG | + | chr3_4:65833501-65833520 | None:intergenic | 35.0% |
| ! | TGTTGTAGTGTGGTGTTTTT+AGG | + | chr3_4:65833502-65833521 | None:intergenic | 35.0% |
| !!! | AGTGGGTTGAATTTTCAACA+TGG | + | chr3_4:65833563-65833582 | None:intergenic | 35.0% |
| ! | TGTTGTTTGATGTCATTGTG+GGG | - | chr3_4:65833625-65833644 | Msa0514900:intron | 35.0% |
| ! | GTAGTTGGATTGGAGTAAAT+GGG | + | chr3_4:65833655-65833674 | None:intergenic | 35.0% |
| TCACGCCATAAATTACTTGT+TGG | - | chr3_4:65833688-65833707 | Msa0514900:intron | 35.0% | |
| TTTGCATTATGTAAAGAGGG+AGG | + | chr3_4:65833728-65833747 | None:intergenic | 35.0% | |
| !! | CTCACTTAAGCTCTAAAATG+AGG | + | chr3_4:65833975-65833994 | None:intergenic | 35.0% |
| ! | GGACACAAATTTGTCTTTTG+TGG | + | chr3_4:65834728-65834747 | None:intergenic | 35.0% |
| !! | CATTTCCATAGTGGATTCAA+AGG | - | chr3_4:65835323-65835342 | Msa0514900:intron | 35.0% |
| TTAAGATCTCTACTGTAGTC+TGG | - | chr3_4:65835523-65835542 | Msa0514900:intron | 35.0% | |
| TAAGATCTCTACTGTAGTCT+GGG | - | chr3_4:65835524-65835543 | Msa0514900:intron | 35.0% | |
| ! | TTTTTGTCTCTCCAAATTGC+GGG | - | chr3_4:65835554-65835573 | Msa0514900:intron | 35.0% |
| GAACTTATTCATTGTCATCC+TGG | - | chr3_4:65835599-65835618 | Msa0514900:intron | 35.0% | |
| TGAAACTTGGCAGATTATCA+AGG | - | chr3_4:65835659-65835678 | Msa0514900:intron | 35.0% | |
| TGATTGTGATATCTCATGGT+TGG | - | chr3_4:65835790-65835809 | Msa0514900:intron | 35.0% | |
| GTTGCTTCTTTGTAAACCTA+AGG | + | chr3_4:65835858-65835877 | None:intergenic | 35.0% | |
| AGGTTTACAAAGAAGCAACA+TGG | - | chr3_4:65835859-65835878 | Msa0514900:intron | 35.0% | |
| GGTTTACAAAGAAGCAACAT+GGG | - | chr3_4:65835860-65835879 | Msa0514900:intron | 35.0% | |
| AGTAGTAAGCTTCAAGTGTA+TGG | + | chr3_4:65835916-65835935 | None:intergenic | 35.0% | |
| AATATGTCATCTCCAACTCT+TGG | + | chr3_4:65836109-65836128 | None:intergenic | 35.0% | |
| TTTATATCAGGAGGAAACCT+AGG | + | chr3_4:65836208-65836227 | None:intergenic | 35.0% | |
| TAGGTTTCCTCCTGATATAA+AGG | - | chr3_4:65836207-65836226 | Msa0514900:CDS | 35.0% | |
| ACAATGTCCTTTATATCAGG+AGG | + | chr3_4:65836217-65836236 | None:intergenic | 35.0% | |
| GACATTGTGTTTAAGCACTT+TGG | - | chr3_4:65836229-65836248 | Msa0514900:CDS | 35.0% | |
| !! | GAGTTGGACAAAAGCATCAA+AGG | - | chr3_4:65832441-65832460 | Msa0514900:CDS | 40.0% |
| GGGACATAGTTGAAAATCGT+TGG | - | chr3_4:65832538-65832557 | Msa0514900:CDS | 40.0% | |
| CGTATGTGTCCACAACTAAA+CGG | + | chr3_4:65832704-65832723 | None:intergenic | 40.0% | |
| ATGATACGAATGGGAGAGTA+TGG | + | chr3_4:65833012-65833031 | None:intergenic | 40.0% | |
| ! | CGGGTGTTCAATTTTCCAAT+TGG | + | chr3_4:65833369-65833388 | None:intergenic | 40.0% |
| !! | CAACATGGTTTGTTGTAGTG+TGG | + | chr3_4:65833512-65833531 | None:intergenic | 40.0% |
| ! | CGTAGTTGGATTGGAGTAAA+TGG | + | chr3_4:65833656-65833675 | None:intergenic | 40.0% |
| CAATCCAACTACGTACTTCA+CGG | - | chr3_4:65833663-65833682 | Msa0514900:intron | 40.0% | |
| AACATATCATCTCTCCAACC+AGG | - | chr3_4:65834047-65834066 | Msa0514900:intron | 40.0% | |
| ACATATCATCTCTCCAACCA+GGG | - | chr3_4:65834048-65834067 | Msa0514900:intron | 40.0% | |
| TTGTGTCTCCACTTTGATTG+GGG | + | chr3_4:65834077-65834096 | None:intergenic | 40.0% | |
| GTTGTGTCTCCACTTTGATT+GGG | + | chr3_4:65834078-65834097 | None:intergenic | 40.0% | |
| AGTTGTGTCTCCACTTTGAT+TGG | + | chr3_4:65834079-65834098 | None:intergenic | 40.0% | |
| CAGGTTCAACTTCAACATTG+TGG | + | chr3_4:65834307-65834326 | None:intergenic | 40.0% | |
| !! | AATGATCGTTGAGTTGACAG+CGG | + | chr3_4:65835307-65835326 | None:intergenic | 40.0% |
| CTCAACGATCATTTCCATAG+TGG | - | chr3_4:65835314-65835333 | Msa0514900:intron | 40.0% | |
| TAGACCCTTTGAATCCACTA+TGG | + | chr3_4:65835331-65835350 | None:intergenic | 40.0% | |
| GATTCAAAGGGTCTAAGTTG+TGG | - | chr3_4:65835336-65835355 | Msa0514900:intron | 40.0% | |
| CGGGTAATGAATACGAGTAT+GGG | - | chr3_4:65835469-65835488 | Msa0514900:intron | 40.0% | |
| ! | AAGTTACTATGTAGGTGTCG+TGG | + | chr3_4:65835730-65835749 | None:intergenic | 40.0% |
| CAGGTGATTGTGATATCTCA+TGG | - | chr3_4:65835786-65835805 | Msa0514900:intron | 40.0% | |
| TACAAAGAAGCAACATGGGT+TGG | - | chr3_4:65835864-65835883 | Msa0514900:intron | 40.0% | |
| ! | ATATTGACTGGTCACAGTCT+AGG | - | chr3_4:65835989-65836008 | Msa0514900:intron | 40.0% |
| TCATGCAACATCAATATCGC+AGG | + | chr3_4:65836037-65836056 | None:intergenic | 40.0% | |
| TGCGATATTGATGTTGCATG+AGG | - | chr3_4:65836036-65836055 | Msa0514900:intron | 40.0% | |
| ! | GCATGAGGAGTCATTTCTTT+TGG | - | chr3_4:65836051-65836070 | Msa0514900:intron | 40.0% |
| !! | AGGAGTCATTTCTTTTGGAG+AGG | - | chr3_4:65836056-65836075 | Msa0514900:intron | 40.0% |
| !! | TTTCTTTTGGAGAGGCTTCA+AGG | - | chr3_4:65836064-65836083 | Msa0514900:intron | 40.0% |
| !! | TTCTTTTGGAGAGGCTTCAA+GGG | - | chr3_4:65836065-65836084 | Msa0514900:intron | 40.0% |
| CTTCAAGGGGTTTACACATT+TGG | - | chr3_4:65836079-65836098 | Msa0514900:intron | 40.0% | |
| ACATTTGGTCAACCAAGAGT+TGG | - | chr3_4:65836094-65836113 | Msa0514900:intron | 40.0% | |
| ATGTGTCCACAACTAAACGG+CGG | + | chr3_4:65832701-65832720 | None:intergenic | 45.0% | |
| TAGATGGAAGTTGTGGCATG+CGG | - | chr3_4:65832927-65832946 | Msa0514900:CDS | 45.0% | |
| !!! | TGTGGTGTTTTTAGGGTGCA+AGG | + | chr3_4:65833494-65833513 | None:intergenic | 45.0% |
| CGTGAAGTACGTAGTTGGAT+TGG | + | chr3_4:65833665-65833684 | None:intergenic | 45.0% | |
| TAGTGTGCTAACCTGTGCTA+CGG | - | chr3_4:65834591-65834610 | Msa0514900:intron | 45.0% | |
| !! | ATGATCGTTGAGTTGACAGC+GGG | + | chr3_4:65835306-65835325 | None:intergenic | 45.0% |
| GCGGGTAATGAATACGAGTA+TGG | - | chr3_4:65835468-65835487 | Msa0514900:intron | 45.0% | |
| AGCGTACATGTATCGCATGT+GGG | - | chr3_4:65835498-65835517 | Msa0514900:intron | 45.0% | |
| TTTGATGCTGAACAATGGGC+AGG | - | chr3_4:65835767-65835786 | Msa0514900:intron | 45.0% | |
| ! | GCATGAGTTTTTCCAAGTCC+AGG | + | chr3_4:65835821-65835840 | None:intergenic | 45.0% |
| GGACTTGGAAAAACTCATGC+TGG | - | chr3_4:65835821-65835840 | Msa0514900:intron | 45.0% | |
| ! | GCTGGTTTCATGAAAGCCTT+AGG | - | chr3_4:65835839-65835858 | Msa0514900:intron | 45.0% |
| !! | TCTTTTGGAGAGGCTTCAAG+GGG | - | chr3_4:65836066-65836085 | Msa0514900:intron | 45.0% |
| !!! | TTTGTATTTTTTTTTTTTTT+TGG | + | chr3_4:65833139-65833158 | None:intergenic | 5.0% |
| !! | CTAATAAATATAAAAAATAT+AGG | + | chr3_4:65834749-65834768 | None:intergenic | 5.0% |
| !! | TTGATAAATATATAAAAATT+GGG | + | chr3_4:65835096-65835115 | None:intergenic | 5.0% |
| !! | TTTGATAAATATATAAAAAT+TGG | + | chr3_4:65835097-65835116 | None:intergenic | 5.0% |
| !! | ATGATAAATATTAAAAAAAA+GGG | + | chr3_4:65835193-65835212 | None:intergenic | 5.0% |
| !! | AATGATAAATATTAAAAAAA+AGG | + | chr3_4:65835194-65835213 | None:intergenic | 5.0% |
| ! | GTTTTCCCGCCGTTTAGTTG+TGG | - | chr3_4:65832692-65832711 | Msa0514900:CDS | 50.0% |
| TGTGTCCACAACTAAACGGC+GGG | + | chr3_4:65832700-65832719 | None:intergenic | 50.0% | |
| GAAGCCGTGAAGTACGTAGT+TGG | + | chr3_4:65833670-65833689 | None:intergenic | 50.0% | |
| AGTGTGCTAACCTGTGCTAC+GGG | - | chr3_4:65834592-65834611 | Msa0514900:intron | 50.0% | |
| GAGCGTACATGTATCGCATG+TGG | - | chr3_4:65835497-65835516 | Msa0514900:intron | 50.0% | |
| ATCTCATGGTTGGAGCTTCC+TGG | - | chr3_4:65835800-65835819 | Msa0514900:intron | 50.0% | |
| ! | TTGACTGGTCACAGTCTAGG+TGG | - | chr3_4:65835992-65836011 | Msa0514900:intron | 50.0% |
| TTGTGGCATGCGGTGACTAC+TGG | - | chr3_4:65832937-65832956 | Msa0514900:CDS | 55.0% | |
| GCATGCGGTGACTACTGGAA+TGG | - | chr3_4:65832942-65832961 | Msa0514900:CDS | 55.0% | |
| GTGTGCTAACCTGTGCTACG+GGG | - | chr3_4:65834593-65834612 | Msa0514900:intron | 55.0% | |
| CTCTCCAAATTGCGGGTACG+AGG | - | chr3_4:65835561-65835580 | Msa0514900:intron | 55.0% | |
| TCGTCCTCGTACCCGCAATT+TGG | + | chr3_4:65835568-65835587 | None:intergenic | 55.0% | |
| TGGTTGGAGCTTCCTGGACT+TGG | - | chr3_4:65835806-65835825 | Msa0514900:intron | 55.0% | |
| TTGATTGGGGCGACCCTGGT+TGG | + | chr3_4:65834064-65834083 | None:intergenic | 60.0% | |
| CACTTTGATTGGGGCGACCC+TGG | + | chr3_4:65834068-65834087 | None:intergenic | 60.0% | |
| CAGGGTCGCCCCAATCAAAG+TGG | - | chr3_4:65834066-65834085 | Msa0514900:intron | 60.0% | |
| AGCATGTCACCCCGTAGCAC+AGG | + | chr3_4:65834605-65834624 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65832426 | 65836306 | 65832426 | ID=Msa0514900;Name=Msa0514900 |
| chr3_4 | mRNA | 65832426 | 65836306 | 65832426 | ID=Msa0514900-mRNA-1;Parent=Msa0514900;Name=Msa0514900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|3|0|268 |
| chr3_4 | exon | 65836169 | 65836306 | 65836169 | ID=Msa0514900-mRNA-1:exon:16897;Parent=Msa0514900-mRNA-1 |
| chr3_4 | exon | 65835769 | 65835802 | 65835769 | ID=Msa0514900-mRNA-1:exon:16896;Parent=Msa0514900-mRNA-1 |
| chr3_4 | exon | 65832426 | 65833060 | 65832426 | ID=Msa0514900-mRNA-1:exon:16895;Parent=Msa0514900-mRNA-1 |
| chr3_4 | CDS | 65836169 | 65836306 | 65836169 | ID=Msa0514900-mRNA-1:cds;Parent=Msa0514900-mRNA-1 |
| chr3_4 | CDS | 65835769 | 65835802 | 65835769 | ID=Msa0514900-mRNA-1:cds;Parent=Msa0514900-mRNA-1 |
| chr3_4 | CDS | 65832426 | 65833060 | 65832426 | ID=Msa0514900-mRNA-1:cds;Parent=Msa0514900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
