AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269670 MtrunA17_Chr6g0450941 55.024 209 75 4 3 205 105 300 3.23e-66 207
Msa1269670 MtrunA17_Chr6g0450931 53.731 201 83 2 4 203 10 201 2.27e-65 202
Msa1269670 MtrunA17_Chr6g0450901 76.852 108 25 0 105 212 6 113 5.55e-55 172
Msa1269670 MtrunA17_Chr6g0450951 48.454 194 90 2 4 196 10 194 9.47e-53 170
Msa1269670 MtrunA17_Chr4g0059191 38.308 201 113 3 3 202 9 199 8.99e-34 121
Msa1269670 MtrunA17_Chr8g0388621 36.744 215 117 6 6 218 37 234 4.90e-33 120
Msa1269670 MtrunA17_Chr3g0119991 36.530 219 123 5 4 220 12 216 8.30e-32 117
Msa1269670 MtrunA17_Chr3g0119951 36.530 219 123 5 4 220 33 237 1.18e-31 117
Msa1269670 MtrunA17_Chr1g0159431 33.333 219 122 6 2 214 28 228 2.42e-26 102
Msa1269670 MtrunA17_Chr3g0125861 29.536 237 142 6 2 232 28 245 1.35e-23 95.5
Msa1269670 MtrunA17_Chr2g0314571 33.005 203 124 4 2 203 37 228 1.82e-22 92.4
Msa1269670 MtrunA17_Chr6g0450911 61.039 77 28 1 3 77 43 119 4.87e-21 85.9
Msa1269670 MtrunA17_Chr1g0158931 30.876 217 125 6 2 207 29 231 1.08e-19 85.1
Msa1269670 MtrunA17_Chr2g0295681 33.019 212 122 7 3 210 29 224 1.83e-18 81.6
Msa1269670 MtrunA17_Chr8g0386001 26.761 213 136 5 3 210 33 230 6.89e-18 80.5
Msa1269670 MtrunA17_Chr3g0131961 27.572 243 140 7 3 229 34 256 2.46e-17 79.0
Msa1269670 MtrunA17_Chr3g0126411 26.941 219 139 5 2 213 29 233 3.16e-17 78.6
Msa1269670 MtrunA17_Chr8g0359261 29.577 213 124 7 2 207 37 230 3.39e-17 78.2
Msa1269670 MtrunA17_Chr5g0444031 28.936 235 134 6 3 228 53 263 8.44e-17 77.4
Msa1269670 MtrunA17_Chr7g0215601 33.333 180 97 6 58 228 78 243 4.69e-16 75.1
Msa1269670 MtrunA17_Chr3g0126421 26.027 219 141 5 2 213 29 233 6.14e-16 74.7
Msa1269670 MtrunA17_Chr8g0386011 29.787 188 120 5 4 190 34 210 7.57e-16 74.7
Msa1269670 MtrunA17_Chr5g0428281 31.282 195 115 7 3 193 34 213 1.06e-14 71.6
Msa1269670 MtrunA17_Chr2g0278491 28.358 201 128 6 26 224 1 187 1.51e-14 70.9
Msa1269670 MtrunA17_Chr7g0214181 29.167 216 131 7 3 215 33 229 2.46e-13 67.8
Msa1269670 MtrunA17_Chr3g0131951 22.553 235 148 6 3 227 95 305 3.49e-13 68.2
Msa1269670 MtrunA17_Chr7g0214191 29.798 198 122 7 3 197 33 216 5.60e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269670 AT5G62850.1 38.053 226 116 6 1 221 30 236 4.77e-41 141
Msa1269670 AT4G10850.1 36.555 238 121 8 3 225 34 256 3.35e-37 131
Msa1269670 AT5G62850.2 39.665 179 89 5 1 174 30 194 1.89e-32 118
Msa1269670 AT1G66770.1 33.772 228 134 6 4 224 35 252 6.31e-32 118
Msa1269670 AT3G28007.1 41.436 181 89 4 18 194 47 214 9.17e-32 117
Msa1269670 AT5G40260.1 35.533 197 111 5 3 194 32 217 8.22e-28 106
Msa1269670 AT4G15920.1 34.335 233 124 9 3 229 29 238 5.60e-27 104
Msa1269670 AT1G21460.1 35.470 234 120 8 2 225 28 240 9.24e-26 101
Msa1269670 AT5G40260.2 35.028 177 99 5 3 174 32 197 6.56e-24 95.9
Msa1269670 AT3G16690.1 33.168 202 103 8 3 193 29 209 4.65e-22 91.3
Msa1269670 AT3G16690.3 33.168 202 103 8 3 193 64 244 6.63e-22 91.7
Msa1269670 AT1G21460.2 37.427 171 82 4 2 164 28 181 6.08e-20 85.1
Msa1269670 AT5G13170.1 27.500 240 149 7 3 237 35 254 1.54e-19 85.9
Msa1269670 AT4G25010.1 28.807 243 149 9 3 232 33 264 1.70e-19 85.5
Msa1269670 AT5G23660.1 30.833 240 144 10 3 237 35 257 6.38e-19 84.0
Msa1269670 AT5G53190.1 28.750 240 136 8 3 222 30 254 1.90e-18 82.4
Msa1269670 AT5G50800.1 27.189 217 139 6 3 213 33 236 1.81e-17 80.1
Msa1269670 AT2G39060.1 37.795 127 71 2 109 235 129 247 1.16e-16 77.4
Msa1269670 AT3G14770.1 30.303 198 116 5 2 193 37 218 5.64e-16 75.1
Msa1269670 AT5G50790.1 29.319 191 118 6 3 190 33 209 6.65e-15 72.8
Msa1269670 AT3G48740.1 28.085 235 147 10 3 232 35 252 2.28e-14 71.2

Find 47 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGCAACCGGACAGAATT+TGG 0.182213 8_3:-2864963 Msa1269670:CDS
TCTCTGGCTCTATTTCTTAA+TGG 0.196338 8_3:-2862363 Msa1269670:CDS
TTGCAGATCAGTAGTGTTAT+TGG 0.252283 8_3:-2862183 Msa1269670:intron
CAACGTTTAATTGTTTGTTT+TGG 0.284381 8_3:-2865005 Msa1269670:CDS
GGATTTGGAACCGTTGGATT+TGG 0.287514 8_3:+2862027 None:intergenic
TTTGATGGAATCAGTTTCAT+TGG 0.326254 8_3:-2864913 Msa1269670:CDS
GTAGACTGCACAACTGGATT+TGG 0.327744 8_3:+2862012 None:intergenic
TCTACAATCACAGTTCAAAT+AGG 0.383070 8_3:-2861994 Msa1269670:CDS
TGTGCAACCGGACAGAATTT+GGG 0.384414 8_3:-2864962 Msa1269670:CDS
AAAGAAAAGCTTAAACTGTC+TGG 0.397028 8_3:-2864454 Msa1269670:CDS
CCCTACCAAGAGGACTTTAC+CGG 0.410210 8_3:-2864386 Msa1269670:CDS
CGGACAGAATTTGGGTCGTC+GGG 0.413273 8_3:-2864954 Msa1269670:CDS
CATGCCATTCTGCCCCTCTC+TGG 0.413948 8_3:-2862379 Msa1269670:CDS
GTGATTGTAGACTGCACAAC+TGG 0.422184 8_3:+2862006 None:intergenic
TTACTTACCATGACCGTAAG+AGG 0.443764 8_3:+2864319 None:intergenic
AGTGTTATTGGAGCAATCTC+AGG 0.457774 8_3:-2862171 Msa1269670:CDS
CCCCTTCGACATTTATCTCC+TGG 0.464221 8_3:-2862310 Msa1269670:intron
TATTTCTTAATGGATTGTGT+TGG 0.498956 8_3:-2862353 Msa1269670:CDS
ACCAACCGGTAAAGTCCTCT+TGG 0.517896 8_3:+2864381 None:intergenic
TATGTATGTGTCTCCTCTTA+CGG 0.518051 8_3:-2864332 Msa1269670:CDS
AGATGACAAATAATACCAAC+CGG 0.522995 8_3:+2864367 None:intergenic
ACAACTGGATTTGGAACCGT+TGG 0.523673 8_3:+2862021 None:intergenic
TGTGTCTCCTCTTACGGTCA+TGG 0.525131 8_3:-2864326 Msa1269670:intron
GATGTGGAGGAGTTCAAGTC+AGG 0.527431 8_3:-2865042 Msa1269670:CDS
AGAGCCAGAGAGGGGCAGAA+TGG 0.527465 8_3:+2862375 None:intergenic
TATGTGCTAACGACAAAGAA+GGG 0.528690 8_3:-2864852 Msa1269670:CDS
CCGGACAGAATTTGGGTCGT+CGG 0.537548 8_3:-2864955 Msa1269670:CDS
ATATGTGCTAACGACAAAGA+AGG 0.538405 8_3:-2864853 Msa1269670:CDS
AATTATAAAGAATAGGGATG+TGG 0.543473 8_3:-2865058 Msa1269670:CDS
ATTAAGAAATAGAGCCAGAG+AGG 0.552878 8_3:+2862365 None:intergenic
TACAAAGATTTAGAAAAGCA+AGG 0.553198 8_3:+2864422 None:intergenic
ACCAGGAGATAAATGTCGAA+GGG 0.561408 8_3:+2862309 None:intergenic
TATAAAGAATAGGGATGTGG+AGG 0.576434 8_3:-2865055 Msa1269670:CDS
ACCGGTAAAGTCCTCTTGGT+AGG 0.577900 8_3:+2864385 None:intergenic
CCGGTAAAGTCCTCTTGGTA+GGG 0.579503 8_3:+2864386 None:intergenic
TACCAGGAGATAAATGTCGA+AGG 0.582376 8_3:+2862308 None:intergenic
CCGACGACCCAAATTCTGTC+CGG 0.585395 8_3:+2864955 None:intergenic
ACAAAGATTTAGAAAAGCAA+GGG 0.591293 8_3:+2864423 None:intergenic
GGAGATAAATGTCGAAGGGG+TGG 0.605182 8_3:+2862313 None:intergenic
TTAAGAAATAGAGCCAGAGA+GGG 0.621291 8_3:+2862366 None:intergenic
TAATCATGTTCCAAATCCAA+CGG 0.622243 8_3:-2862037 Msa1269670:CDS
ACCAAGAGGACTTTACCGGT+TGG 0.636946 8_3:-2864382 Msa1269670:CDS
GGACAGAATTTGGGTCGTCG+GGG 0.664959 8_3:-2864953 Msa1269670:CDS
ATGTGCTAACGACAAAGAAG+GGG 0.666313 8_3:-2864851 Msa1269670:intron
TAGATTATGACCCTACCAAG+AGG 0.669336 8_3:-2864396 Msa1269670:CDS
CCAGGAGATAAATGTCGAAG+GGG 0.674271 8_3:+2862310 None:intergenic
TAAGAAATAGAGCCAGAGAG+GGG 0.699677 8_3:+2862367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTATAATTTAATTA+AGG + chr8_3:2863281-2863300 None:intergenic 0.0%
!!! TTTATAATTTTTTTCATAGT+TGG + chr8_3:2861982-2862001 None:intergenic 10.0%
!! TGAAAAAAATTATAAAGAAT+AGG - chr8_3:2861986-2862005 Msa1269670:CDS 10.0%
!! GAAAAAAATTATAAAGAATA+GGG - chr8_3:2861987-2862006 Msa1269670:CDS 10.0%
!! CATAATATATAAAGTAATAA+TGG + chr8_3:2862768-2862787 None:intergenic 10.0%
!!! TAAAGATTTTAATAAAATGA+AGG + chr8_3:2863129-2863148 None:intergenic 10.0%
!!! TTTTATTATTGTTGATAAAA+CGG - chr8_3:2863442-2863461 Msa1269670:intron 10.0%
!! ATTAAAATATACATATATGT+TGG - chr8_3:2863546-2863565 Msa1269670:intron 10.0%
!! ATATATATAAATAAATTACC+AGG + chr8_3:2864762-2864781 None:intergenic 10.0%
!!! TATAATTTAATTAAGGTATC+AGG + chr8_3:2863274-2863293 None:intergenic 15.0%
!! AAAAAACTAAATCATATTCT+AGG - chr8_3:2863417-2863436 Msa1269670:intron 15.0%
!! AATTTCATAAATAAGTATCA+CGG - chr8_3:2863467-2863486 Msa1269670:intron 15.0%
!!! ATGTATATTTTAATTACAAC+AGG + chr8_3:2863540-2863559 None:intergenic 15.0%
!! AAAAATGGTGTTTAAATATA+GGG + chr8_3:2863595-2863614 None:intergenic 15.0%
!! TAAAAATGGTGTTTAAATAT+AGG + chr8_3:2863596-2863615 None:intergenic 15.0%
!!! TATTATTTAGAAGTATGTTT+AGG + chr8_3:2863672-2863691 None:intergenic 15.0%
!! TATATTGCTAAAATATTTGA+TGG + chr8_3:2864106-2864125 None:intergenic 15.0%
!!! ATATTTTAGCAATATATCAA+TGG - chr8_3:2864110-2864129 Msa1269670:intron 15.0%
!!! CAGATATTCTTTAAAAAAAA+TGG + chr8_3:2864321-2864340 None:intergenic 15.0%
!! AATTTCACAATAATACAAAA+TGG + chr8_3:2864479-2864498 None:intergenic 15.0%
!!! CAAATAAGAGTTTAATTTAT+GGG + chr8_3:2864568-2864587 None:intergenic 15.0%
!!! ACAAATAAGAGTTTAATTTA+TGG + chr8_3:2864569-2864588 None:intergenic 15.0%
!!! AACGTTTAATTGTTTGTTTT+GGG - chr8_3:2862047-2862066 Msa1269670:CDS 20.0%
!!! TTACTTAATACTTCTTTTGA+TGG - chr8_3:2862123-2862142 Msa1269670:CDS 20.0%
!!! ATTTTTTGTTTAAAGAGGTT+AGG + chr8_3:2862451-2862470 None:intergenic 20.0%
!!! CTTCAATTTTTTGTTTAAAG+AGG + chr8_3:2862456-2862475 None:intergenic 20.0%
!!! TCTATTTTACATTTTAAGTG+TGG + chr8_3:2862860-2862879 None:intergenic 20.0%
!! TAACTTCTACTATAAAGAAT+TGG - chr8_3:2862957-2862976 Msa1269670:intron 20.0%
!!! AATTAGATAATTAGCTTTGT+GGG + chr8_3:2863088-2863107 None:intergenic 20.0%
!!! TAATTAGATAATTAGCTTTG+TGG + chr8_3:2863089-2863108 None:intergenic 20.0%
!! TAAGAAAGAATGAATACAAT+GGG + chr8_3:2863244-2863263 None:intergenic 20.0%
!! TTAAGAAAGAATGAATACAA+TGG + chr8_3:2863245-2863264 None:intergenic 20.0%
!!! GATTCTCTAAAAAAAATTGA+CGG - chr8_3:2863306-2863325 Msa1269670:intron 20.0%
!!! ATTCTCTAAAAAAAATTGAC+GGG - chr8_3:2863307-2863326 Msa1269670:intron 20.0%
!!! TTATTGGTTTAGACTAAATA+AGG - chr8_3:2863379-2863398 Msa1269670:intron 20.0%
!!! TATTGGTTTAGACTAAATAA+GGG - chr8_3:2863380-2863399 Msa1269670:intron 20.0%
!! ATTTCATAAATAAGTATCAC+GGG - chr8_3:2863468-2863487 Msa1269670:intron 20.0%
!!! AGACAACTTTTTAGTAAAAA+TGG + chr8_3:2863610-2863629 None:intergenic 20.0%
!!! ACTTGTCTTGATTTTTTTAT+AGG - chr8_3:2863698-2863717 Msa1269670:intron 20.0%
!! AATAATAGAGTCAATACAAT+TGG - chr8_3:2863749-2863768 Msa1269670:intron 20.0%
!! ATAATAGAGTCAATACAATT+GGG - chr8_3:2863750-2863769 Msa1269670:intron 20.0%
!! AAAAATGTGAAAAATGCAAA+TGG - chr8_3:2863951-2863970 Msa1269670:intron 20.0%
!!! AAATACCTTTTCTTTTTGTT+AGG + chr8_3:2864265-2864284 None:intergenic 20.0%
!!! AAAAGAAAAGGTATTTTCAT+AGG - chr8_3:2864269-2864288 Msa1269670:intron 20.0%
!! GAATATCTGATATATCTTAA+AGG - chr8_3:2864332-2864351 Msa1269670:CDS 20.0%
!! TTGGTGGAAATAAATTATTA+AGG - chr8_3:2864388-2864407 Msa1269670:CDS 20.0%
!! TGGTGGAAATAAATTATTAA+GGG - chr8_3:2864389-2864408 Msa1269670:CDS 20.0%
!! TAATATGGATAGTTAAAGAA+TGG + chr8_3:2864539-2864558 None:intergenic 20.0%
!!! TCATACTATATGCTTATTTT+TGG - chr8_3:2864914-2864933 Msa1269670:CDS 20.0%
! AATTATAAAGAATAGGGATG+TGG - chr8_3:2861993-2862012 Msa1269670:CDS 25.0%
!! CAACGTTTAATTGTTTGTTT+TGG - chr8_3:2862046-2862065 Msa1269670:CDS 25.0%
!! TTTATTTAAGACCGTATAGT+TGG - chr8_3:2862348-2862367 Msa1269670:CDS 25.0%
! TTGAATAAATAACAGCTGAT+AGG - chr8_3:2862501-2862520 Msa1269670:intron 25.0%
! AGTATAGAGAAGAATATGAA+TGG + chr8_3:2862543-2862562 None:intergenic 25.0%
!! TATTCTTTTACCCTAATTTC+AGG - chr8_3:2862566-2862585 Msa1269670:intron 25.0%
! ACAAAGATTTAGAAAAGCAA+GGG + chr8_3:2862631-2862650 None:intergenic 25.0%
! TACAAAGATTTAGAAAAGCA+AGG + chr8_3:2862632-2862651 None:intergenic 25.0%
!! ACTACAAAGATATTTTCACA+TGG - chr8_3:2862934-2862953 Msa1269670:intron 25.0%
! AATTGTACAACTGAAAAAAC+TGG + chr8_3:2863059-2863078 None:intergenic 25.0%
!!! ATTAGATAATTAGCTTTGTG+GGG + chr8_3:2863087-2863106 None:intergenic 25.0%
!!! GATAATTAGATAGTGGAAAT+GGG + chr8_3:2863191-2863210 None:intergenic 25.0%
!!! AGATAATTAGATAGTGGAAA+TGG + chr8_3:2863192-2863211 None:intergenic 25.0%
! ACAAAGGATAAAACTGTTAT+TGG - chr8_3:2863363-2863382 Msa1269670:intron 25.0%
!!! TTGTATTGACTCTATTATTC+TGG + chr8_3:2863748-2863767 None:intergenic 25.0%
! AACAAATTTCCTAAGTTGTA+GGG - chr8_3:2864012-2864031 Msa1269670:intron 25.0%
! TACCTATGAAAATACCAATT+CGG + chr8_3:2864194-2864213 None:intergenic 25.0%
! CAATCACATATTACTACTAA+AGG - chr8_3:2864218-2864237 Msa1269670:intron 25.0%
! TATATCTTAAAGGTGAGATT+TGG - chr8_3:2864342-2864361 Msa1269670:CDS 25.0%
! ATGTAAAATACACAACTAGT+TGG - chr8_3:2864369-2864388 Msa1269670:CDS 25.0%
! GGTGGAAATAAATTATTAAG+GGG - chr8_3:2864390-2864409 Msa1269670:CDS 25.0%
! ATTTATGGGTCAATCTAATA+TGG + chr8_3:2864554-2864573 None:intergenic 25.0%
!!! TATTTCTTAATGGATTGTGT+TGG - chr8_3:2864698-2864717 Msa1269670:intron 25.0%
! GTTTATGATTGTAGTTCAAT+TGG - chr8_3:2864790-2864809 Msa1269670:intron 25.0%
TTTGATGGAATCAGTTTCAT+TGG - chr8_3:2862138-2862157 Msa1269670:CDS 30.0%
!! TTTCATTGGACTTGTTTTCA+TGG - chr8_3:2862152-2862171 Msa1269670:CDS 30.0%
TTATCCATGAAATGTTAGCT+TGG - chr8_3:2862297-2862316 Msa1269670:intron 30.0%
TTGAGATGATCCTGAAATTA+GGG + chr8_3:2862579-2862598 None:intergenic 30.0%
! TTTGAGATGATCCTGAAATT+AGG + chr8_3:2862580-2862599 None:intergenic 30.0%
AAAGAAAAGCTTAAACTGTC+TGG - chr8_3:2862597-2862616 Msa1269670:intron 30.0%
AGATGACAAATAATACCAAC+CGG + chr8_3:2862687-2862706 None:intergenic 30.0%
! GTTGTTAATTTTCCCATGAT+GGG - chr8_3:2863000-2863019 Msa1269670:intron 30.0%
!! TTAGATAATTAGCTTTGTGG+GGG + chr8_3:2863086-2863105 None:intergenic 30.0%
!! ACTTGGTTGTTATTTAGAGA+AGG + chr8_3:2863337-2863356 None:intergenic 30.0%
TTATCCTTTGTGCTTAAACT+TGG + chr8_3:2863354-2863373 None:intergenic 30.0%
TTAGACTAAATAAGGGCAAA+TGG - chr8_3:2863387-2863406 Msa1269670:intron 30.0%
TAGACTAAATAAGGGCAAAT+GGG - chr8_3:2863388-2863407 Msa1269670:intron 30.0%
! TACAACAGGTTTCTAGAAAA+CGG + chr8_3:2863526-2863545 None:intergenic 30.0%
ATGGTGTTTAAATATAGGGA+CGG + chr8_3:2863591-2863610 None:intergenic 30.0%
CAACAAATTTCCTAAGTTGT+AGG - chr8_3:2864011-2864030 Msa1269670:intron 30.0%
GCATGAATAAGCATAGTATT+TGG - chr8_3:2864051-2864070 Msa1269670:intron 30.0%
AGCATAGTATTTGGTACAAA+AGG - chr8_3:2864060-2864079 Msa1269670:intron 30.0%
! CTTTTTGTTAGGTAGCTTAA+TGG + chr8_3:2864254-2864273 None:intergenic 30.0%
AGCTACCTAACAAAAAGAAA+AGG - chr8_3:2864257-2864276 Msa1269670:intron 30.0%
TAAAATACACAACTAGTTGG+TGG - chr8_3:2864372-2864391 Msa1269670:CDS 30.0%
AAATGACACTAGTTCACATT+TGG - chr8_3:2864512-2864531 Msa1269670:intron 30.0%
CTACGTTACATATAATGAAC+AGG - chr8_3:2864618-2864637 Msa1269670:intron 30.0%
!!! ATATGCTTATTTTTGGTGCA+AGG - chr8_3:2864921-2864940 Msa1269670:CDS 30.0%
!!! TATGCTTATTTTTGGTGCAA+GGG - chr8_3:2864922-2864941 Msa1269670:CDS 30.0%
TAATCATGTTCCAAATCCAA+CGG - chr8_3:2865014-2865033 Msa1269670:CDS 30.0%
TCTACAATCACAGTTCAAAT+AGG - chr8_3:2865057-2865076 Msa1269670:CDS 30.0%
TATAAAGAATAGGGATGTGG+AGG - chr8_3:2861996-2862015 Msa1269670:CDS 35.0%
!!! TGTTTGTTTTGGGTATGCTT+TGG - chr8_3:2862057-2862076 Msa1269670:CDS 35.0%
ATATGTGCTAACGACAAAGA+AGG - chr8_3:2862198-2862217 Msa1269670:intron 35.0%
TATGTGCTAACGACAAAGAA+GGG - chr8_3:2862199-2862218 Msa1269670:intron 35.0%
ACTGTAGATAGCCAACTATA+CGG + chr8_3:2862362-2862381 None:intergenic 35.0%
GTATTATCACTCAAGCAAAG+TGG + chr8_3:2862417-2862436 None:intergenic 35.0%
! TGAGCAACTTGATTTTTGCT+GGG + chr8_3:2862480-2862499 None:intergenic 35.0%
! TTGAGCAACTTGATTTTTGC+TGG + chr8_3:2862481-2862500 None:intergenic 35.0%
TATGTATGTGTCTCCTCTTA+CGG - chr8_3:2862719-2862738 Msa1269670:intron 35.0%
CTACTATAAAGAATTGGTGC+AGG - chr8_3:2862963-2862982 Msa1269670:intron 35.0%
! GGTTGTTAATTTTCCCATGA+TGG - chr8_3:2862999-2863018 Msa1269670:intron 35.0%
! GAAATGGGTATCAGGATTTT+CGG + chr8_3:2863176-2863195 None:intergenic 35.0%
GGCGTTAGATAATTAGATAG+TGG + chr8_3:2863198-2863217 None:intergenic 35.0%
GAGTGATGAATCAAAGAGAT+AGG + chr8_3:2863219-2863238 None:intergenic 35.0%
ACAACCAAGTTTAAGCACAA+AGG - chr8_3:2863347-2863366 Msa1269670:intron 35.0%
! ACAACAGGTTTCTAGAAAAC+GGG + chr8_3:2863525-2863544 None:intergenic 35.0%
TGTTTAAATATAGGGACGGA+CGG + chr8_3:2863587-2863606 None:intergenic 35.0%
GATGGCTATGATTGAAGAAT+GGG + chr8_3:2864088-2864107 None:intergenic 35.0%
TGATGGCTATGATTGAAGAA+TGG + chr8_3:2864089-2864108 None:intergenic 35.0%
! AATTAGAGCTTTTCCCATGA+TGG - chr8_3:2864135-2864154 Msa1269670:intron 35.0%
! ATTAGAGCTTTTCCCATGAT+GGG - chr8_3:2864136-2864155 Msa1269670:intron 35.0%
! CTCTCTAATTTTCCCATCAT+GGG + chr8_3:2864151-2864170 None:intergenic 35.0%
! ACTCTCTAATTTTCCCATCA+TGG + chr8_3:2864152-2864171 None:intergenic 35.0%
CTATGAAAATACCAATTCGG+TGG + chr8_3:2864191-2864210 None:intergenic 35.0%
! CACCGAATTGGTATTTTCAT+AGG - chr8_3:2864189-2864208 Msa1269670:intron 35.0%
TAACGTAGCATCAAGAAGTT+TGG + chr8_3:2864606-2864625 None:intergenic 35.0%
TTAAGAAATAGAGCCAGAGA+GGG + chr8_3:2864688-2864707 None:intergenic 35.0%
ATTAAGAAATAGAGCCAGAG+AGG + chr8_3:2864689-2864708 None:intergenic 35.0%
!! TCTCTGGCTCTATTTCTTAA+TGG - chr8_3:2864688-2864707 Msa1269670:intron 35.0%
TTGCAGATCAGTAGTGTTAT+TGG - chr8_3:2864868-2864887 Msa1269670:CDS 35.0%
! TGGAAATGCTTTTGTGCAAC+CGG - chr8_3:2862077-2862096 Msa1269670:CDS 40.0%
ATGTGCTAACGACAAAGAAG+GGG - chr8_3:2862200-2862219 Msa1269670:intron 40.0%
AGCACCAAGCTAACATTTCA+TGG + chr8_3:2862304-2862323 None:intergenic 40.0%
!! AGCTTGGTGCTTTGTAGTAT+AGG - chr8_3:2862313-2862332 Msa1269670:CDS 40.0%
ACTCAAGCAAAGTGGAGATT+AGG + chr8_3:2862409-2862428 None:intergenic 40.0%
TAGATTATGACCCTACCAAG+AGG - chr8_3:2862655-2862674 Msa1269670:intron 40.0%
TTACTTACCATGACCGTAAG+AGG + chr8_3:2862735-2862754 None:intergenic 40.0%
AGAATTGGTGCAGGTTATAG+TGG - chr8_3:2862972-2862991 Msa1269670:intron 40.0%
GAATTGGTGCAGGTTATAGT+GGG - chr8_3:2862973-2862992 Msa1269670:intron 40.0%
ACTGAAAAAACTGGCAGTAC+TGG + chr8_3:2863050-2863069 None:intergenic 40.0%
!! AGATAGTGGAAATGGGTATC+AGG + chr8_3:2863184-2863203 None:intergenic 40.0%
GCAAATGGTGCTTACATAGA+AGG - chr8_3:2863966-2863985 Msa1269670:intron 40.0%
TAAACGTGTCCCTACAACTT+AGG + chr8_3:2864024-2864043 None:intergenic 40.0%
! AATTCGGTGGCATTTATGGT+GGG + chr8_3:2864178-2864197 None:intergenic 40.0%
! TACCAATTCGGTGGCATTTA+TGG + chr8_3:2864182-2864201 None:intergenic 40.0%
TAAGAAATAGAGCCAGAGAG+GGG + chr8_3:2864687-2864706 None:intergenic 40.0%
ACCAGGAGATAAATGTCGAA+GGG + chr8_3:2864745-2864764 None:intergenic 40.0%
TACCAGGAGATAAATGTCGA+AGG + chr8_3:2864746-2864765 None:intergenic 40.0%
! AGTGTTATTGGAGCAATCTC+AGG - chr8_3:2864880-2864899 Msa1269670:CDS 40.0%
TTGTGCAACCGGACAGAATT+TGG - chr8_3:2862088-2862107 Msa1269670:CDS 45.0%
TGTGCAACCGGACAGAATTT+GGG - chr8_3:2862089-2862108 Msa1269670:CDS 45.0%
! CAATTCGGTGGCATTTATGG+TGG + chr8_3:2864179-2864198 None:intergenic 45.0%
CACCATAAATGCCACCGAAT+TGG - chr8_3:2864177-2864196 Msa1269670:intron 45.0%
CCAGGAGATAAATGTCGAAG+GGG + chr8_3:2864744-2864763 None:intergenic 45.0%
! GGATTTGGAACCGTTGGATT+TGG + chr8_3:2865027-2865046 None:intergenic 45.0%
! ACAACTGGATTTGGAACCGT+TGG + chr8_3:2865033-2865052 None:intergenic 45.0%
GTAGACTGCACAACTGGATT+TGG + chr8_3:2865042-2865061 None:intergenic 45.0%
GTGATTGTAGACTGCACAAC+TGG + chr8_3:2865048-2865067 None:intergenic 45.0%
!! ATAATATATAAAGTAATAAT+GGG + chr8_3:2862767-2862786 None:intergenic 5.0%
!!! ATTTCAAAAATTTTAATAAA+AGG - chr8_3:2864440-2864459 Msa1269670:CDS 5.0%
GATGTGGAGGAGTTCAAGTC+AGG - chr8_3:2862009-2862028 Msa1269670:CDS 50.0%
CCGGTAAAGTCCTCTTGGTA+GGG + chr8_3:2862668-2862687 None:intergenic 50.0%
CCCTACCAAGAGGACTTTAC+CGG - chr8_3:2862665-2862684 Msa1269670:intron 50.0%
ACCGGTAAAGTCCTCTTGGT+AGG + chr8_3:2862669-2862688 None:intergenic 50.0%
ACCAAGAGGACTTTACCGGT+TGG - chr8_3:2862669-2862688 Msa1269670:intron 50.0%
ACCAACCGGTAAAGTCCTCT+TGG + chr8_3:2862673-2862692 None:intergenic 50.0%
TGTGTCTCCTCTTACGGTCA+TGG - chr8_3:2862725-2862744 Msa1269670:intron 50.0%
! TGGTGCAGGTTATAGTGGGA+AGG - chr8_3:2862977-2862996 Msa1269670:intron 50.0%
! GGTGCAGGTTATAGTGGGAA+GGG - chr8_3:2862978-2862997 Msa1269670:intron 50.0%
ACTTCGGCTTCTCCCATCAT+GGG + chr8_3:2863015-2863034 None:intergenic 50.0%
CTGGCAATAACCGGTCACTT+CGG + chr8_3:2863031-2863050 None:intergenic 50.0%
!! CTGGCAGTACTGGCAATAAC+CGG + chr8_3:2863040-2863059 None:intergenic 50.0%
GGAGATAAATGTCGAAGGGG+TGG + chr8_3:2864741-2864760 None:intergenic 50.0%
CCCCTTCGACATTTATCTCC+TGG - chr8_3:2864741-2864760 Msa1269670:intron 50.0%
CCGACGACCCAAATTCTGTC+CGG + chr8_3:2862099-2862118 None:intergenic 55.0%
CCGGACAGAATTTGGGTCGT+CGG - chr8_3:2862096-2862115 Msa1269670:CDS 55.0%
CGGACAGAATTTGGGTCGTC+GGG - chr8_3:2862097-2862116 Msa1269670:CDS 55.0%
GGACAGAATTTGGGTCGTCG+GGG - chr8_3:2862098-2862117 Msa1269670:CDS 55.0%
CACTTCGGCTTCTCCCATCA+TGG + chr8_3:2863016-2863035 None:intergenic 55.0%
ATGGGAGAAGCCGAAGTGAC+CGG - chr8_3:2863018-2863037 Msa1269670:intron 55.0%
CATGCCATTCTGCCCCTCTC+TGG - chr8_3:2864672-2864691 Msa1269670:intron 60.0%
AGAGCCAGAGAGGGGCAGAA+TGG + chr8_3:2864679-2864698 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2861978 2865095 2861978 ID=Msa1269670;Name=Msa1269670
chr8_3 mRNA 2861978 2865095 2861978 ID=Msa1269670-mRNA-1;Parent=Msa1269670;Name=Msa1269670-mRNA-1;_AED=0.15;_eAED=0.16;_QI=7|0|0|1|0.66|0.5|4|0|247
chr8_3 exon 2864852 2865095 2864852 ID=Msa1269670-mRNA-1:exon:939;Parent=Msa1269670-mRNA-1
chr8_3 exon 2864327 2864485 2864327 ID=Msa1269670-mRNA-1:exon:938;Parent=Msa1269670-mRNA-1
chr8_3 exon 2862311 2862433 2862311 ID=Msa1269670-mRNA-1:exon:937;Parent=Msa1269670-mRNA-1
chr8_3 exon 2861978 2862199 2861978 ID=Msa1269670-mRNA-1:exon:936;Parent=Msa1269670-mRNA-1
chr8_3 five_prime_UTR 2865089 2865095 2865089 ID=Msa1269670-mRNA-1:five_prime_utr;Parent=Msa1269670-mRNA-1
chr8_3 CDS 2864852 2865088 2864852 ID=Msa1269670-mRNA-1:cds;Parent=Msa1269670-mRNA-1
chr8_3 CDS 2864327 2864485 2864327 ID=Msa1269670-mRNA-1:cds;Parent=Msa1269670-mRNA-1
chr8_3 CDS 2862311 2862433 2862311 ID=Msa1269670-mRNA-1:cds;Parent=Msa1269670-mRNA-1
chr8_3 CDS 2861978 2862199 2861978 ID=Msa1269670-mRNA-1:cds;Parent=Msa1269670-mRNA-1
Gene Sequence

>Msa1269670

ATGAAAAAAATTATAAAGAATAGGGATGTGGAGGAGTTCAAGTCAGGTATATACATAGCTACAACGTTTAATTGTTTGTTTTGGGTATGCTTTGGAAATGCTTTTGTGCAACCGGACAGAATTTGGGTCGTCGGGGATTTACTTAATACTTCTTTTGATGGAATCAGTTTCATTGGACTTGTTTTCATGGTCGTCTATCTTATCATATTTTATATATGTGCTAACGACAAAGAAGGGGATCATCTCAAAGAAAAGCTTAAACTGTCTGGAATTATGTCCCTTGCTTTTCTAAATCTTTGTATACTAGATTATGACCCTACCAAGAGGACTTTACCGGTTGGTATTATTTGTCATCTCTTGAACATAATTATGTATGTGTCTCCTCTTACGGTCATGGAAAATGTTATAAAAACAAAGAGTGTAAAATACATGCCATTCTGCCCCTCTCTGGCTCTATTTCTTAATGGATTGTGTTGGACAACATATGCTCTATTCCACCCCTTCGACATTTATCTCCTGATCAGTAGTGTTATTGGAGCAATCTCAGGACTTCTTCAGCTCATACTATATGCTTATTTTTGGTGCAAGGGAGAAAATAATAATGATGATGTTAATCAATTATCTAATGATGCTGTTAATCAAATATCTAATGATGATGTTAATCATGTTCCAAATCCAACGGTTCCAAATCCAGTTGTGCAGTCTACAATCACAGTTCAAATAGGCTTCACTAATACTAAT

Protein sequence

>Msa1269670

MKKIIKNRDVEEFKSGIYIATTFNCLFWVCFGNAFVQPDRIWVVGDLLNTSFDGISFIGLVFMVVYLIIFYICANDKEGDHLKEKLKLSGIMSLAFLNLCILDYDPTKRTLPVGIICHLLNIIMYVSPLTVMENVIKTKSVKYMPFCPSLALFLNGLCWTTYALFHPFDIYLLISSVIGAISGLLQLILYAYFWCKGENNNDDVNQLSNDAVNQISNDDVNHVPNPTVPNPVVQSTITVQIGFTNTN