AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516850 MtrunA17_Chr3g0127861 97.170 424 12 0 1 424 1 424 0.0 858
Msa0516850 MtrunA17_Chr1g0189151 53.494 415 158 5 10 424 15 394 3.60e-160 457
Msa0516850 MtrunA17_Chr5g0395041 43.171 410 219 6 17 417 30 434 2.67e-112 336
Msa0516850 MtrunA17_Chr4g0000091 31.208 298 175 9 115 396 68 351 3.13e-36 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516850 AT1G64720.1 58.234 419 123 8 8 424 16 384 1.73e-169 480
Msa0516850 AT5G54170.1 52.998 417 171 8 20 416 16 427 2.59e-144 419
Msa0516850 AT4G14500.1 46.305 406 209 3 17 417 30 431 2.44e-125 370
Msa0516850 AT3G23080.1 45.432 405 204 5 17 417 26 417 5.88e-117 348
Msa0516850 AT3G23080.2 45.865 399 199 5 23 417 1 386 2.38e-116 345
Msa0516850 AT3G23080.3 45.865 399 199 5 23 417 1 386 2.38e-116 345
Msa0516850 AT4G14500.2 43.333 240 129 3 17 249 30 269 3.67e-59 195
Msa0516850 AT3G13062.1 32.653 294 181 8 119 402 84 370 4.04e-40 148
Msa0516850 AT3G13062.2 32.653 294 181 8 119 402 84 370 5.97e-40 148
Msa0516850 AT3G13062.3 31.788 302 181 9 119 402 84 378 2.44e-37 140
Msa0516850 AT1G55960.1 32.432 296 178 8 116 396 80 368 3.21e-37 140
Msa0516850 AT1G55960.2 29.693 293 159 9 119 396 83 343 3.83e-26 109

Find 190 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATAATAATTTGGAATT+TGG 0.087816 3_4:+68395460 None:intergenic
AAGATTTGGATTTGCTAATT+TGG 0.096001 3_4:-68392640 Msa0516850:CDS
TGAAGAGCCAATGAGTTATT+TGG 0.155566 3_4:+68395328 None:intergenic
ATGAGGTTTGAATAATAATT+TGG 0.162370 3_4:+68395453 None:intergenic
TTACCACCACACTTTATATT+TGG 0.170666 3_4:-68395363 Msa0516850:five_prime_UTR
CCTTGTGGAACTATCAAATT+TGG 0.183642 3_4:+68394559 None:intergenic
CAATGGAAAACCCTGCAATT+TGG 0.229635 3_4:-68394859 Msa0516850:CDS
ATCAATCTCTTGAAGGGATT+TGG 0.233935 3_4:-68392590 Msa0516850:three_prime_UTR
AAATAGTACTGCTTCGATAT+TGG 0.237005 3_4:+68393887 None:intergenic
CAATAAAGAGATCAATAAAA+AGG 0.238323 3_4:-68394603 Msa0516850:CDS
TCTTATCCATTGCACTTTCA+TGG 0.240540 3_4:+68393747 None:intergenic
ACATTATCGGGCGAAGAATA+TGG 0.249260 3_4:-68393581 Msa0516850:CDS
TTTGGTGTTGCTAAAAGATT+TGG 0.250029 3_4:-68392654 Msa0516850:CDS
AATGGAAAACCCTGCAATTT+GGG 0.252814 3_4:-68394858 Msa0516850:CDS
AAAGTCTCGGCTTGTTGATT+TGG 0.257188 3_4:-68392225 Msa0516850:three_prime_UTR
AGATGGTGAGGGATTTGTTC+TGG 0.264325 3_4:-68393846 Msa0516850:CDS
TAAACCAAAACCACTCTAAT+TGG 0.265319 3_4:-68395242 Msa0516850:five_prime_UTR
AGTTTATTTCACCCTCTTAA+AGG 0.266705 3_4:-68394904 Msa0516850:five_prime_UTR
TGAACCAATTAGAGTGGTTT+TGG 0.278685 3_4:+68395238 None:intergenic
AGATTTGGATTTGCTAATTT+GGG 0.278788 3_4:-68392639 Msa0516850:CDS
ACTCTCTCGTTCCGCTTTCA+TGG 0.280943 3_4:-68392874 Msa0516850:CDS
GAGTTATTGTTGGTTGGTTA+TGG 0.284197 3_4:-68394784 Msa0516850:CDS
ATGAACAATTCCGACCTAAA+TGG 0.286495 3_4:-68393822 Msa0516850:CDS
TGGTCCTAGGGAAAATTAAA+TGG 0.295109 3_4:+68395532 None:intergenic
AATAGTACTGCTTCGATATT+GGG 0.295359 3_4:+68393888 None:intergenic
GAAGAGCCAATGAGTTATTT+GGG 0.295858 3_4:+68395329 None:intergenic
GTGACCAAGGCTGTTATATT+TGG 0.297239 3_4:-68392672 Msa0516850:CDS
ATTTGAGGAGAAGAATAATT+AGG 0.297481 3_4:+68395033 None:intergenic
CCCTCTCGAAGCCATTGTTT+TGG 0.297942 3_4:-68392355 Msa0516850:three_prime_UTR
CTTTCTCATTCCCCTAGATT+TGG 0.311325 3_4:+68392244 None:intergenic
ACCGAAATGGATTGTTTCAT+TGG 0.320605 3_4:-68394759 Msa0516850:CDS
TTATTGATGCACAAAGAATC+AGG 0.325112 3_4:+68394620 None:intergenic
TATCAAGAAGCAAAAGCTTC+TGG 0.334002 3_4:-68392903 Msa0516850:CDS
AATATAGGAGAATCTGAAAT+TGG 0.334138 3_4:+68394713 None:intergenic
TAGGGAAAATTAAATGGAAA+TGG 0.334646 3_4:+68395538 None:intergenic
GCTCTTCCATCATGAAGAAA+TGG 0.335228 3_4:-68393009 Msa0516850:CDS
ACAAGCATATCATCCCATTT+AGG 0.342967 3_4:+68393808 None:intergenic
CAACCAATGTAATGCGCATT+TGG 0.348140 3_4:+68392540 None:intergenic
GCCAATGAAACAATCCATTT+CGG 0.348500 3_4:+68394758 None:intergenic
GCATTAAAACCCCAAATTGC+AGG 0.348790 3_4:+68394848 None:intergenic
AAGTCTCGGCTTGTTGATTT+GGG 0.349338 3_4:-68392224 Msa0516850:three_prime_UTR
CTTGGGAAATTGCAAAGCTT+GGG 0.351239 3_4:-68392980 Msa0516850:CDS
CTTGCTTGTAGTCTAGATAA+AGG 0.357837 3_4:-68392699 Msa0516850:CDS
TATGAAGAAGAAATGTGAAT+AGG 0.357876 3_4:+68395207 None:intergenic
TTCTTGATAAGCGCGTAAAC+CGG 0.360902 3_4:+68392917 None:intergenic
TTCTCTGTCTTTACAGAAGA+AGG 0.369154 3_4:+68393605 None:intergenic
ACGGCGTTTGATTGTTTGCT+TGG 0.379599 3_4:+68395512 None:intergenic
CCTTGGGAAATTGCAAAGCT+TGG 0.380072 3_4:-68392981 Msa0516850:CDS
TTGATTGTTTGCTTGGTCCT+AGG 0.388399 3_4:+68395519 None:intergenic
ATGCACAAAGAATCAGGGTT+TGG 0.389553 3_4:+68394626 None:intergenic
TTCGGTACGGTCATGCCCTT+TGG 0.391532 3_4:+68392750 None:intergenic
ATGAAGAAGAAATGTGAATA+GGG 0.392048 3_4:+68395208 None:intergenic
GTTTATTTCACCCTCTTAAA+GGG 0.396971 3_4:-68394903 Msa0516850:five_prime_UTR
GTCAGAAGTAATCGCACTTC+CGG 0.403328 3_4:+68392779 None:intergenic
TTTGTGTTGGAGAATTTGTT+AGG 0.407127 3_4:+68395279 None:intergenic
GTTGGTTATGGAAACCGAAA+TGG 0.409722 3_4:-68394772 Msa0516850:CDS
GTTGAATCAAAGAGAGATAA+TGG 0.410181 3_4:-68393056 Msa0516850:CDS
AAGGAGCTGTGGAATATTTG+AGG 0.414935 3_4:+68395018 None:intergenic
AATTTCAATGGCGAAAATAT+AGG 0.421810 3_4:+68394698 None:intergenic
AAGTTTCAAAACCCTTTAAG+AGG 0.424066 3_4:+68394892 None:intergenic
CGCATTACATTGGTTGATGT+TGG 0.425042 3_4:-68392533 Msa0516850:three_prime_UTR
CTCTTCCATCATGAAGAAAT+GGG 0.425947 3_4:-68393008 Msa0516850:CDS
TCTCGTTCCGCTTTCATGGC+CGG 0.427496 3_4:-68392870 Msa0516850:CDS
ATGAAGAAATGGGAATTCCT+TGG 0.434331 3_4:-68392998 Msa0516850:CDS
AGAAAGAAGATAAGAAGAAG+AGG 0.435078 3_4:+68395154 None:intergenic
AACAAATCCCTCACCATCTC+AGG 0.435785 3_4:+68393850 None:intergenic
GAAGGAAATGGAGGTATTAG+TGG 0.438740 3_4:+68395565 None:intergenic
CATTATCGGGCGAAGAATAT+GGG 0.439592 3_4:-68393580 Msa0516850:CDS
AAAGACAGAGAATACATTAT+CGG 0.440471 3_4:-68393594 Msa0516850:CDS
TGAACAATTCCGACCTAAAT+GGG 0.442545 3_4:-68393821 Msa0516850:CDS
TCTTAGGAGTTATTGTTGGT+TGG 0.448664 3_4:-68394790 Msa0516850:CDS
TCCGGTGAAGATACTTCTAA+TGG 0.456041 3_4:-68394142 Msa0516850:CDS
AGAAAGATGGAGGTCTTCCT+TGG 0.462865 3_4:-68394075 Msa0516850:CDS
AAACATTCACATGGTAAAGT+TGG 0.463882 3_4:-68392050 Msa0516850:three_prime_UTR
GATGGTGAGGGATTTGTTCT+GGG 0.463908 3_4:-68393845 Msa0516850:CDS
TGAAGAAATGGGAATTCCTT+GGG 0.464197 3_4:-68392997 Msa0516850:CDS
TGATTGTTTGCTTGGTCCTA+GGG 0.465087 3_4:+68395520 None:intergenic
AGGGAAAATTAAATGGAAAT+GGG 0.466993 3_4:+68395539 None:intergenic
GTTAGGTGTTGTGTTTGTGT+TGG 0.472614 3_4:+68395266 None:intergenic
TTGGTTCTCTACGCCATGCC+TGG 0.479368 3_4:+68394014 None:intergenic
CCACCAATGACTAGCATCTT+CGG 0.484556 3_4:+68392732 None:intergenic
GCAAAGCTTGGGGTGCGAAA+AGG 0.484622 3_4:-68392969 Msa0516850:CDS
GTTGATGTTGGATCAAGATC+GGG 0.486228 3_4:-68392521 Msa0516850:three_prime_UTR
CTATGCAGTTCTCAGAAATC+CGG 0.487042 3_4:-68394160 Msa0516850:intron
GAATTCCCATTTCTTCATGA+TGG 0.489686 3_4:+68393003 None:intergenic
AGATTCCCCAAATAACTCAT+TGG 0.490673 3_4:-68395335 Msa0516850:five_prime_UTR
GGTTGATGTTGGATCAAGAT+CGG 0.498351 3_4:-68392522 Msa0516850:three_prime_UTR
GGCGAAGAATATGGGAATGC+GGG 0.499090 3_4:-68393572 Msa0516850:CDS
CATCCAAATGCGCATTACAT+TGG 0.501466 3_4:-68392543 Msa0516850:three_prime_UTR
GATGATGAATCATTACAAAC+CGG 0.502385 3_4:-68392798 Msa0516850:CDS
AAAGAAGAATAGAATTTCAA+TGG 0.502415 3_4:+68394686 None:intergenic
AGGTGGAATCAATCTCTTGA+AGG 0.504620 3_4:-68392597 Msa0516850:three_prime_UTR
AAGGGGTATGTGGTTGAAGA+AGG 0.505565 3_4:+68394999 None:intergenic
GAGTTTGAAATTTAGACCAT+TGG 0.506045 3_4:-68392449 Msa0516850:three_prime_UTR
AAGACAGAGAATACATTATC+GGG 0.507509 3_4:-68393593 Msa0516850:CDS
TCTAGTTGGTGCATTCGAGC+AGG 0.509639 3_4:-68393347 Msa0516850:intron
GGAAATGGGAGTGAAGGAAA+TGG 0.509840 3_4:+68395553 None:intergenic
AAGAGGGTGAAATAAACTAA+AGG 0.510097 3_4:+68394909 None:intergenic
AGAGGGTGAAATAAACTAAA+GGG 0.510899 3_4:+68394910 None:intergenic
AATGCGTTCTGAGGAAACTA+AGG 0.512423 3_4:+68394964 None:intergenic
GAAGAAATGTGAATAGGGAT+AGG 0.514206 3_4:+68395213 None:intergenic
TCTCTGTCTTTACAGAAGAA+GGG 0.516792 3_4:+68393606 None:intergenic
GCGAAAAGGCATGTGGGGAA+TGG 0.521022 3_4:-68392955 Msa0516850:CDS
TCTTCCTTGGATACAGATGA+TGG 0.524577 3_4:-68394062 Msa0516850:CDS
CCAAGCTTTGCAATTTCCCA+AGG 0.529721 3_4:+68392981 None:intergenic
TCTTGATAAGCGCGTAAACC+GGG 0.530261 3_4:+68392918 None:intergenic
CTCTGTCTTTACAGAAGAAG+GGG 0.532991 3_4:+68393607 None:intergenic
GTAAAAGATAGTAGAACTAA+AGG 0.533449 3_4:-68392617 Msa0516850:exon
CATTAAAACCCCAAATTGCA+GGG 0.535660 3_4:+68394849 None:intergenic
TGATGTTGGAATTGAAAATG+AGG 0.539227 3_4:+68395436 None:intergenic
TTGGGGTGCGAAAAGGCATG+TGG 0.540671 3_4:-68392962 Msa0516850:CDS
GAAAGAAGATAAGAAGAAGA+GGG 0.540918 3_4:+68395155 None:intergenic
TACCTTTGTGACGCAATAGT+AGG 0.544173 3_4:+68393545 None:intergenic
ACCATTAGAAGTATCTTCAC+CGG 0.545080 3_4:+68394141 None:intergenic
TTAAATGGAAATGGGAGTGA+AGG 0.546440 3_4:+68395547 None:intergenic
TGGGGTGCGAAAAGGCATGT+GGG 0.547657 3_4:-68392961 Msa0516850:CDS
AAGCTTGTTGAAGAGAAAGA+TGG 0.548875 3_4:-68394088 Msa0516850:CDS
GGTGGAATCAATCTCTTGAA+GGG 0.550268 3_4:-68392596 Msa0516850:three_prime_UTR
AAAGATAGTAGAACTAAAGG+TGG 0.551418 3_4:-68392614 Msa0516850:exon
TCCAAAACAATGGCTTCGAG+AGG 0.551638 3_4:+68392354 None:intergenic
ATGGTACAAAAGATTGAGCC+CGG 0.553382 3_4:-68392936 Msa0516850:CDS
AACACCAAATATAACAGCCT+TGG 0.555762 3_4:+68392668 None:intergenic
GAAAGTGCAATGGATAAGAA+AGG 0.560742 3_4:-68393743 Msa0516850:intron
GTACCGAAGATGCTAGTCAT+TGG 0.562943 3_4:-68392735 Msa0516850:CDS
TTGGGAAATTGCAAAGCTTG+GGG 0.564589 3_4:-68392979 Msa0516850:CDS
TTGCACTTTCATGGTTCCAG+TGG 0.567434 3_4:+68393756 None:intergenic
TATTGATGCACAAAGAATCA+GGG 0.567482 3_4:+68394621 None:intergenic
ACTTTCATGGTTCCAGTGGT+AGG 0.569928 3_4:+68393760 None:intergenic
TTAGAAGAGTGTCCTACCAC+TGG 0.570104 3_4:-68393772 Msa0516850:CDS
AGTTTCAAAACCCTTTAAGA+GGG 0.570957 3_4:+68394893 None:intergenic
CACAGAGTTTATAAATTCTG+TGG 0.571669 3_4:+68392137 None:intergenic
TTTATTACTTCAAAATGTGG+AGG 0.572509 3_4:-68392302 Msa0516850:three_prime_UTR
TAGATGTGTATTACTCTAGT+TGG 0.573803 3_4:-68393361 Msa0516850:CDS
GCTTGTTGATTTGGGAGAGA+GGG 0.574652 3_4:-68392216 Msa0516850:three_prime_UTR
ATGCAACTCCTGAGATGGTG+AGG 0.574823 3_4:-68393858 Msa0516850:CDS
CCGATGGATTGCAAGTACTC+AGG 0.575720 3_4:+68392828 None:intergenic
TTATCCATCATCTGTATCCA+AGG 0.580476 3_4:+68394058 None:intergenic
TAATACACATCTACACGTCT+AGG 0.582676 3_4:+68393371 None:intergenic
GGCTTGTTGATTTGGGAGAG+AGG 0.583955 3_4:-68392217 Msa0516850:three_prime_UTR
CTAGGGGAATGAGAAAGTCT+CGG 0.584830 3_4:-68392238 Msa0516850:three_prime_UTR
CCGAAGATGCTAGTCATTGG+TGG 0.584906 3_4:-68392732 Msa0516850:CDS
CCTGAGTACTTGCAATCCAT+CGG 0.588767 3_4:-68392828 Msa0516850:CDS
TACTTCTGACGACAAACCAA+AGG 0.589022 3_4:-68392766 Msa0516850:CDS
ATGAAAGCGGAACGAGAGAG+TGG 0.589867 3_4:+68392876 None:intergenic
GAGTTATTTGGGGAATCTAG+AGG 0.590288 3_4:+68395340 None:intergenic
AAGAGCCAATGAGTTATTTG+GGG 0.590619 3_4:+68395330 None:intergenic
TTTGGTGGGTGAAGAAGAAG+AGG 0.592927 3_4:+68394577 None:intergenic
CGACTATGAGTTACCAGGCA+TGG 0.594580 3_4:-68394027 Msa0516850:CDS
TTGTAATGATTCATCATCAG+AGG 0.595726 3_4:+68392803 None:intergenic
TTGTTATAGAATGCGTTCTG+AGG 0.596541 3_4:+68394955 None:intergenic
TGAATTCTTAGACCATGAGT+AGG 0.598691 3_4:-68392166 Msa0516850:three_prime_UTR
TGAAGATGCAACTCCTGAGA+TGG 0.599312 3_4:-68393863 Msa0516850:CDS
ATGGAAAACCCTGCAATTTG+GGG 0.599898 3_4:-68394857 Msa0516850:CDS
ACTTCTGACGACAAACCAAA+GGG 0.601183 3_4:-68392765 Msa0516850:CDS
TTCATCATCAGAGGATCCGA+TGG 0.604092 3_4:+68392812 None:intergenic
TACTGCTTCGATATTGGGGA+GGG 0.606720 3_4:+68393893 None:intergenic
AATGGGAGTGAAGGAAATGG+AGG 0.607439 3_4:+68395556 None:intergenic
ACTGTTCGATCAAGATCCAA+TGG 0.611534 3_4:+68392433 None:intergenic
TGTGGAACTATCAAATTTGG+TGG 0.612711 3_4:+68394562 None:intergenic
TTGTAGTCTAGATAAAGGAT+TGG 0.612824 3_4:-68392694 Msa0516850:CDS
AATGACTAGCATCTTCGGTA+CGG 0.620562 3_4:+68392737 None:intergenic
CTGGAACCATGAAAGTGCAA+TGG 0.622256 3_4:-68393753 Msa0516850:CDS
TAGGAATGAACCAATTAGAG+TGG 0.623041 3_4:+68395232 None:intergenic
GGGCGAAGAATATGGGAATG+CGG 0.625266 3_4:-68393573 Msa0516850:CDS
ATAGTACTGCTTCGATATTG+GGG 0.625450 3_4:+68393889 None:intergenic
TGTGGTTGAAGAAGGAGCTG+TGG 0.626852 3_4:+68395007 None:intergenic
GAAGAATATGGGAATGCGGG+AGG 0.627874 3_4:-68393569 Msa0516850:CDS
GGCATGGCGTAGAGAACCAA+AGG 0.628323 3_4:-68394011 Msa0516850:intron
GGGGTGCGAAAAGGCATGTG+GGG 0.628732 3_4:-68392960 Msa0516850:CDS
GCATATCATCCCATTTAGGT+CGG 0.629636 3_4:+68393812 None:intergenic
TGCAACTCCTGAGATGGTGA+GGG 0.632971 3_4:-68393857 Msa0516850:CDS
ATTGACACCGGCCATGAAAG+CGG 0.633342 3_4:+68392863 None:intergenic
CCAAAACAATGGCTTCGAGA+GGG 0.633529 3_4:+68392355 None:intergenic
TGGTAAAACGAGTGATGTGA+AGG 0.634891 3_4:+68395380 None:intergenic
ACGTGGATCATCCAAAACAA+TGG 0.639277 3_4:+68392344 None:intergenic
TAGAGGCCAAATATAAAGTG+TGG 0.640061 3_4:+68395357 None:intergenic
CATGCCTGGTAACTCATAGT+CGG 0.646187 3_4:+68394028 None:intergenic
AGGCCAAATATAAAGTGTGG+TGG 0.647076 3_4:+68395360 None:intergenic
CCAAATTTGATAGTTCCACA+AGG 0.652382 3_4:-68394559 Msa0516850:intron
GTCCTACTATTGCGTCACAA+AGG 0.655181 3_4:-68393547 Msa0516850:intron
GTACTGCTTCGATATTGGGG+AGG 0.655617 3_4:+68393892 None:intergenic
GGAAACTATAATGGATAACG+TGG 0.662024 3_4:+68392327 None:intergenic
TACTCCGACTATGAGTTACC+AGG 0.668614 3_4:-68394032 Msa0516850:CDS
CTTGTTGAAGAGAAAGATGG+AGG 0.668763 3_4:-68394085 Msa0516850:CDS
GATGTTGGATCAAGATCGGG+CGG 0.673003 3_4:-68392518 Msa0516850:three_prime_UTR
AGATAAAGGATTGGTGACCA+AGG 0.675087 3_4:-68392685 Msa0516850:CDS
CAGAATTTATAAACTCTGTG+TGG 0.677998 3_4:-68392134 Msa0516850:three_prime_UTR
ATGTATTGTAAACATTCACA+TGG 0.678770 3_4:-68392059 Msa0516850:three_prime_UTR
GTGGAACTATCAAATTTGGT+GGG 0.683465 3_4:+68394563 None:intergenic
GTAATAGAAGAATTAACACA+AGG 0.716696 3_4:+68394659 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATAATAATTTGGAATT+TGG + chr3_4:68392105-68392124 None:intergenic 15.0%
!! AATTAAAAAGATGACAAAAT+TGG + chr3_4:68392503-68392522 None:intergenic 15.0%
!!! ACAAAAAAAATCAAATTTTG+AGG - chr3_4:68392626-68392645 Msa0516850:exon 15.0%
!!! CAAAAAAAATCAAATTTTGA+GGG - chr3_4:68392627-68392646 Msa0516850:exon 15.0%
!! AATAAAGAGATCAATAAAAA+GGG - chr3_4:68392960-68392979 Msa0516850:CDS 15.0%
!! TAATAAAAAGGAAACTATAA+TGG + chr3_4:68395247-68395266 None:intergenic 15.0%
!! ATTATAAAAAAACCAAATCT+AGG - chr3_4:68395306-68395325 Msa0516850:five_prime_UTR 15.0%
!! TTATAAAAAAACCAAATCTA+GGG - chr3_4:68395307-68395326 Msa0516850:five_prime_UTR 15.0%
!!! TCTAAGTTTTGTCAATTTAA+CGG + chr3_4:68392072-68392091 None:intergenic 20.0%
!! ATGAGGTTTGAATAATAATT+TGG + chr3_4:68392112-68392131 None:intergenic 20.0%
!! TAAGGAGAAAAAATTAAAAG+GGG + chr3_4:68392583-68392602 None:intergenic 20.0%
!! CTAAGGAGAAAAAATTAAAA+GGG + chr3_4:68392584-68392603 None:intergenic 20.0%
!! ACTAAGGAGAAAAAATTAAA+AGG + chr3_4:68392585-68392604 None:intergenic 20.0%
!! AAAGAAGAATAGAATTTCAA+TGG + chr3_4:68392879-68392898 None:intergenic 20.0%
!! CAATAAAGAGATCAATAAAA+AGG - chr3_4:68392959-68392978 Msa0516850:CDS 20.0%
!! CAATTGAATTAATCCATAAT+TGG - chr3_4:68393158-68393177 Msa0516850:intron 20.0%
!! ATAAAGCTAATTTGGATATT+TGG - chr3_4:68393251-68393270 Msa0516850:intron 20.0%
!!! TTTTCAAACTTATCCAAAAT+TGG + chr3_4:68393281-68393300 None:intergenic 20.0%
!! TTTGGATAAGTTTGAAAATT+TGG - chr3_4:68393283-68393302 Msa0516850:intron 20.0%
!! TTGGATAAGTTTGAAAATTT+GGG - chr3_4:68393284-68393303 Msa0516850:intron 20.0%
!! TAATTTGAAAACTCAATAGA+AGG + chr3_4:68393617-68393636 None:intergenic 20.0%
!!! TTTTGTATTGTTGATTCAAT+AGG - chr3_4:68393642-68393661 Msa0516850:intron 20.0%
!!! CACATTTTGAAGTAATAAAA+AGG + chr3_4:68395259-68395278 None:intergenic 20.0%
!!! CTTTTTATTACTTCAAAATG+TGG - chr3_4:68395257-68395276 Msa0516850:five_prime_UTR 20.0%
!! TATAAAAAAACCAAATCTAG+GGG - chr3_4:68395308-68395327 Msa0516850:five_prime_UTR 20.0%
!!! ATAGAATACTTTTATTGCTA+CGG + chr3_4:68395466-68395485 None:intergenic 20.0%
! AGGGAAAATTAAATGGAAAT+GGG + chr3_4:68392026-68392045 None:intergenic 25.0%
! TAGGGAAAATTAAATGGAAA+TGG + chr3_4:68392027-68392046 None:intergenic 25.0%
!!! ATTTCCATTTAATTTTCCCT+AGG - chr3_4:68392026-68392045 Msa0516850:three_prime_UTR 25.0%
! ATGAAGAAGAAATGTGAATA+GGG + chr3_4:68392357-68392376 None:intergenic 25.0%
! TATGAAGAAGAAATGTGAAT+AGG + chr3_4:68392358-68392377 None:intergenic 25.0%
! AGAGAAAGACAAAAAGATAT+GGG + chr3_4:68392459-68392478 None:intergenic 25.0%
! AAGAGAAAGACAAAAAGATA+TGG + chr3_4:68392460-68392479 None:intergenic 25.0%
! CAAAATTGGTGAAAAAAAAG+AGG + chr3_4:68392489-68392508 None:intergenic 25.0%
! ATTTGAGGAGAAGAATAATT+AGG + chr3_4:68392532-68392551 None:intergenic 25.0%
!! AAAAAATTAAAAGGGGTATG+TGG + chr3_4:68392576-68392595 None:intergenic 25.0%
!!! GAAACTTTTTCTTGTTACAA+TGG - chr3_4:68392686-68392705 Msa0516850:CDS 25.0%
! AAGAAAAACACTAACAACAT+AGG + chr3_4:68392756-68392775 None:intergenic 25.0%
!! ATGTTGTTAGTGTTTTTCTT+AGG - chr3_4:68392756-68392775 Msa0516850:CDS 25.0%
!! TTTTTCTTAGGAGTTATTGT+TGG - chr3_4:68392768-68392787 Msa0516850:CDS 25.0%
!! AATATAGGAGAATCTGAAAT+TGG + chr3_4:68392852-68392871 None:intergenic 25.0%
! AATTTCAATGGCGAAAATAT+AGG + chr3_4:68392867-68392886 None:intergenic 25.0%
! GTAATAGAAGAATTAACACA+AGG + chr3_4:68392906-68392925 None:intergenic 25.0%
! ATTAATGGAAAATTACCTTG+TGG + chr3_4:68393021-68393040 None:intergenic 25.0%
!! TTCATGTTTTTCTGTTATTG+AGG - chr3_4:68393073-68393092 Msa0516850:intron 25.0%
!! TTTTCTGTTATTGAGGAATT+AGG - chr3_4:68393080-68393099 Msa0516850:intron 25.0%
! AATTGGGAATTAAAGATAGT+AGG - chr3_4:68393228-68393247 Msa0516850:intron 25.0%
! ATAGTAGGATAAAGCTAATT+TGG - chr3_4:68393243-68393262 Msa0516850:intron 25.0%
!! GATATTTGGTTAACCAATTT+TGG - chr3_4:68393265-68393284 Msa0516850:intron 25.0%
! GCATTGTTTGAATGTTTAAT+TGG - chr3_4:68393341-68393360 Msa0516850:intron 25.0%
! TTTGAATGTTTAATTGGCTA+TGG - chr3_4:68393347-68393366 Msa0516850:intron 25.0%
! AAAGACAGAGAATACATTAT+CGG - chr3_4:68393968-68393987 Msa0516850:intron 25.0%
!!! ACTTATTTTTGTATTGACAC+CGG + chr3_4:68394714-68394733 None:intergenic 25.0%
!!! AAGATTTGGATTTGCTAATT+TGG - chr3_4:68394922-68394941 Msa0516850:five_prime_UTR 25.0%
!!! AGATTTGGATTTGCTAATTT+GGG - chr3_4:68394923-68394942 Msa0516850:five_prime_UTR 25.0%
! GTAAAAGATAGTAGAACTAA+AGG - chr3_4:68394945-68394964 Msa0516850:five_prime_UTR 25.0%
! TTTATTACTTCAAAATGTGG+AGG - chr3_4:68395260-68395279 Msa0516850:five_prime_UTR 25.0%
! ATGTATTGTAAACATTCACA+TGG - chr3_4:68395503-68395522 Msa0516850:five_prime_UTR 25.0%
TGATGTTGGAATTGAAAATG+AGG + chr3_4:68392129-68392148 None:intergenic 30.0%
!!! AAGAGTGTTGATTTTGATGT+TGG + chr3_4:68392143-68392162 None:intergenic 30.0%
TTACCACCACACTTTATATT+TGG - chr3_4:68392199-68392218 Msa0516850:three_prime_UTR 30.0%
! TTTGTGTTGGAGAATTTGTT+AGG + chr3_4:68392286-68392305 None:intergenic 30.0%
TAAACCAAAACCACTCTAAT+TGG - chr3_4:68392320-68392339 Msa0516850:three_prime_UTR 30.0%
!!! GGTTTTGTTTTTATGGGTTT+GGG + chr3_4:68392389-68392408 None:intergenic 30.0%
!!! GAAGAGGGTTTTGTTTTTAT+GGG + chr3_4:68392395-68392414 None:intergenic 30.0%
!!! AGAAGAGGGTTTTGTTTTTA+TGG + chr3_4:68392396-68392415 None:intergenic 30.0%
GAAAGAAGATAAGAAGAAGA+GGG + chr3_4:68392410-68392429 None:intergenic 30.0%
AGAAAGAAGATAAGAAGAAG+AGG + chr3_4:68392411-68392430 None:intergenic 30.0%
!!! TGTTTTGATTAAGACGTGAA+GGG + chr3_4:68392435-68392454 None:intergenic 30.0%
GAGAAAGACAAAAAGATATG+GGG + chr3_4:68392458-68392477 None:intergenic 30.0%
AGAGGGTGAAATAAACTAAA+GGG + chr3_4:68392655-68392674 None:intergenic 30.0%
AAGAGGGTGAAATAAACTAA+AGG + chr3_4:68392656-68392675 None:intergenic 30.0%
AGTTTATTTCACCCTCTTAA+AGG - chr3_4:68392658-68392677 Msa0516850:CDS 30.0%
GTTTATTTCACCCTCTTAAA+GGG - chr3_4:68392659-68392678 Msa0516850:CDS 30.0%
! AGTTTCAAAACCCTTTAAGA+GGG + chr3_4:68392672-68392691 None:intergenic 30.0%
AAGTTTCAAAACCCTTTAAG+AGG + chr3_4:68392673-68392692 None:intergenic 30.0%
TATTGATGCACAAAGAATCA+GGG + chr3_4:68392944-68392963 None:intergenic 30.0%
TTATTGATGCACAAAGAATC+AGG + chr3_4:68392945-68392964 None:intergenic 30.0%
! GGAATTAGGTAGATGATTTT+TGG - chr3_4:68393094-68393113 Msa0516850:intron 30.0%
! AATCCATAATTGGTCTATGA+TGG - chr3_4:68393168-68393187 Msa0516850:intron 30.0%
TCCTTAACTACTAGTGAAAT+TGG - chr3_4:68393211-68393230 Msa0516850:intron 30.0%
CCTTAACTACTAGTGAAATT+GGG - chr3_4:68393212-68393231 Msa0516850:intron 30.0%
!! GTATTGTTGATTCAATAGGA+CGG - chr3_4:68393646-68393665 Msa0516850:intron 30.0%
AATAGTACTGCTTCGATATT+GGG + chr3_4:68393677-68393696 None:intergenic 30.0%
AAATAGTACTGCTTCGATAT+TGG + chr3_4:68393678-68393697 None:intergenic 30.0%
TCAAATCAAATCAAGCGAAA+AGG + chr3_4:68393852-68393871 None:intergenic 30.0%
! TATCTGTTTTCATGTGCTTA+TGG - chr3_4:68393908-68393927 Msa0516850:intron 30.0%
AAGACAGAGAATACATTATC+GGG - chr3_4:68393969-68393988 Msa0516850:intron 30.0%
! TTGAAGTCATTGATTGAAGA+TGG - chr3_4:68394073-68394092 Msa0516850:CDS 30.0%
!! TATTTGCTTTTCTTCCTTTC+AGG - chr3_4:68394133-68394152 Msa0516850:CDS 30.0%
!! ATTTGCTTTTCTTCCTTTCA+GGG - chr3_4:68394134-68394153 Msa0516850:CDS 30.0%
TAGATGTGTATTACTCTAGT+TGG - chr3_4:68394201-68394220 Msa0516850:intron 30.0%
GTTGAATCAAAGAGAGATAA+TGG - chr3_4:68394506-68394525 Msa0516850:intron 30.0%
TTGTAATGATTCATCATCAG+AGG + chr3_4:68394762-68394781 None:intergenic 30.0%
GATGATGAATCATTACAAAC+CGG - chr3_4:68394764-68394783 Msa0516850:CDS 30.0%
TTGTAGTCTAGATAAAGGAT+TGG - chr3_4:68394868-68394887 Msa0516850:exon 30.0%
!! TTTGGTGTTGCTAAAAGATT+TGG - chr3_4:68394908-68394927 Msa0516850:five_prime_UTR 30.0%
AAAGATAGTAGAACTAAAGG+TGG - chr3_4:68394948-68394967 Msa0516850:five_prime_UTR 30.0%
! GAGTTTGAAATTTAGACCAT+TGG - chr3_4:68395113-68395132 Msa0516850:five_prime_UTR 30.0%
CACAGAGTTTATAAATTCTG+TGG + chr3_4:68395428-68395447 None:intergenic 30.0%
CAGAATTTATAAACTCTGTG+TGG - chr3_4:68395428-68395447 Msa0516850:five_prime_UTR 30.0%
AAACATTCACATGGTAAAGT+TGG - chr3_4:68395512-68395531 Msa0516850:five_prime_UTR 30.0%
TTAAATGGAAATGGGAGTGA+AGG + chr3_4:68392018-68392037 None:intergenic 35.0%
TGGTCCTAGGGAAAATTAAA+TGG + chr3_4:68392033-68392052 None:intergenic 35.0%
TAGAGGCCAAATATAAAGTG+TGG + chr3_4:68392208-68392227 None:intergenic 35.0%
AGATTCCCCAAATAACTCAT+TGG - chr3_4:68392227-68392246 Msa0516850:three_prime_UTR 35.0%
AAGAGCCAATGAGTTATTTG+GGG + chr3_4:68392235-68392254 None:intergenic 35.0%
GAAGAGCCAATGAGTTATTT+GGG + chr3_4:68392236-68392255 None:intergenic 35.0%
TGAAGAGCCAATGAGTTATT+TGG + chr3_4:68392237-68392256 None:intergenic 35.0%
!!! GAGTGGTTTTGGTTTATGTT+AGG + chr3_4:68392316-68392335 None:intergenic 35.0%
! TGAACCAATTAGAGTGGTTT+TGG + chr3_4:68392327-68392346 None:intergenic 35.0%
TAGGAATGAACCAATTAGAG+TGG + chr3_4:68392333-68392352 None:intergenic 35.0%
GAAGAAATGTGAATAGGGAT+AGG + chr3_4:68392352-68392371 None:intergenic 35.0%
!!! GGGTTTTGTTTTTATGGGTT+TGG + chr3_4:68392390-68392409 None:intergenic 35.0%
!!! GTGTTTTGATTAAGACGTGA+AGG + chr3_4:68392436-68392455 None:intergenic 35.0%
TGGTGAAAAAAAAGAGGAAG+AGG + chr3_4:68392483-68392502 None:intergenic 35.0%
TTGTTATAGAATGCGTTCTG+AGG + chr3_4:68392610-68392629 None:intergenic 35.0%
AATGGAAAACCCTGCAATTT+GGG - chr3_4:68392704-68392723 Msa0516850:CDS 35.0%
CATTAAAACCCCAAATTGCA+GGG + chr3_4:68392716-68392735 None:intergenic 35.0%
TCTTAGGAGTTATTGTTGGT+TGG - chr3_4:68392772-68392791 Msa0516850:CDS 35.0%
! GAGTTATTGTTGGTTGGTTA+TGG - chr3_4:68392778-68392797 Msa0516850:CDS 35.0%
!! ACCGAAATGGATTGTTTCAT+TGG - chr3_4:68392803-68392822 Msa0516850:CDS 35.0%
GCCAATGAAACAATCCATTT+CGG + chr3_4:68392807-68392826 None:intergenic 35.0%
GTGGAACTATCAAATTTGGT+GGG + chr3_4:68393002-68393021 None:intergenic 35.0%
TGTGGAACTATCAAATTTGG+TGG + chr3_4:68393003-68393022 None:intergenic 35.0%
CCTTGTGGAACTATCAAATT+TGG + chr3_4:68393006-68393025 None:intergenic 35.0%
! CCAAATTTGATAGTTCCACA+AGG - chr3_4:68393003-68393022 Msa0516850:CDS 35.0%
CCCAATTTCACTAGTAGTTA+AGG + chr3_4:68393215-68393234 None:intergenic 35.0%
!! GAAAATTTGGGTTGAATGTG+TGG - chr3_4:68393296-68393315 Msa0516850:intron 35.0%
!! ACCATTAGAAGTATCTTCAC+CGG + chr3_4:68393424-68393443 None:intergenic 35.0%
!! AAGCTTGTTGAAGAGAAAGA+TGG - chr3_4:68393474-68393493 Msa0516850:intron 35.0%
TTATCCATCATCTGTATCCA+AGG + chr3_4:68393507-68393526 None:intergenic 35.0%
CTTCTATCGTAACATACCTT+TGG + chr3_4:68393570-68393589 None:intergenic 35.0%
! CAAAGGTATGTTACGATAGA+AGG - chr3_4:68393568-68393587 Msa0516850:CDS 35.0%
ATAGTACTGCTTCGATATTG+GGG + chr3_4:68393676-68393695 None:intergenic 35.0%
ATGAACAATTCCGACCTAAA+TGG - chr3_4:68393740-68393759 Msa0516850:intron 35.0%
TGAACAATTCCGACCTAAAT+GGG - chr3_4:68393741-68393760 Msa0516850:intron 35.0%
ACAAGCATATCATCCCATTT+AGG + chr3_4:68393757-68393776 None:intergenic 35.0%
TCTTATCCATTGCACTTTCA+TGG + chr3_4:68393818-68393837 None:intergenic 35.0%
! GAAAGTGCAATGGATAAGAA+AGG - chr3_4:68393819-68393838 Msa0516850:CDS 35.0%
TCTCTGTCTTTACAGAAGAA+GGG + chr3_4:68393959-68393978 None:intergenic 35.0%
TTCTCTGTCTTTACAGAAGA+AGG + chr3_4:68393960-68393979 None:intergenic 35.0%
!! TTTGCTTTTCTTCCTTTCAG+GGG - chr3_4:68394135-68394154 Msa0516850:CDS 35.0%
! TTTTCTTGTCTTGGGATTGA+AGG + chr3_4:68394170-68394189 None:intergenic 35.0%
! GTCTAGGTTTTTCTTGTCTT+GGG + chr3_4:68394178-68394197 None:intergenic 35.0%
TAATACACATCTACACGTCT+AGG + chr3_4:68394194-68394213 None:intergenic 35.0%
AGCCTATATAACAAGTCAAG+CGG + chr3_4:68394443-68394462 None:intergenic 35.0%
CTCTTCCATCATGAAGAAAT+GGG - chr3_4:68394554-68394573 Msa0516850:intron 35.0%
GAATTCCCATTTCTTCATGA+TGG + chr3_4:68394562-68394581 None:intergenic 35.0%
ATGAAGAAATGGGAATTCCT+TGG - chr3_4:68394564-68394583 Msa0516850:CDS 35.0%
TGAAGAAATGGGAATTCCTT+GGG - chr3_4:68394565-68394584 Msa0516850:CDS 35.0%
TATCAAGAAGCAAAAGCTTC+TGG - chr3_4:68394659-68394678 Msa0516850:CDS 35.0%
CTTGCTTGTAGTCTAGATAA+AGG - chr3_4:68394863-68394882 Msa0516850:exon 35.0%
AACACCAAATATAACAGCCT+TGG + chr3_4:68394897-68394916 None:intergenic 35.0%
ATCAATCTCTTGAAGGGATT+TGG - chr3_4:68394972-68394991 Msa0516850:five_prime_UTR 35.0%
!! GGAAACTATAATGGATAACG+TGG + chr3_4:68395238-68395257 None:intergenic 35.0%
!!! AAATGTGGAGGCTCTTTTTT+TGG - chr3_4:68395272-68395291 Msa0516850:five_prime_UTR 35.0%
TGAATTCTTAGACCATGAGT+AGG - chr3_4:68395396-68395415 Msa0516850:five_prime_UTR 35.0%
!! GAAGGAAATGGAGGTATTAG+TGG + chr3_4:68392000-68392019 None:intergenic 40.0%
TGATTGTTTGCTTGGTCCTA+GGG + chr3_4:68392045-68392064 None:intergenic 40.0%
TTGATTGTTTGCTTGGTCCT+AGG + chr3_4:68392046-68392065 None:intergenic 40.0%
TGGTAAAACGAGTGATGTGA+AGG + chr3_4:68392185-68392204 None:intergenic 40.0%
AGGCCAAATATAAAGTGTGG+TGG + chr3_4:68392205-68392224 None:intergenic 40.0%
GAGTTATTTGGGGAATCTAG+AGG + chr3_4:68392225-68392244 None:intergenic 40.0%
! GTTAGGTGTTGTGTTTGTGT+TGG + chr3_4:68392299-68392318 None:intergenic 40.0%
AAGGAGCTGTGGAATATTTG+AGG + chr3_4:68392547-68392566 None:intergenic 40.0%
!! AATGCGTTCTGAGGAAACTA+AGG + chr3_4:68392601-68392620 None:intergenic 40.0%
CAATGGAAAACCCTGCAATT+TGG - chr3_4:68392703-68392722 Msa0516850:CDS 40.0%
ATGGAAAACCCTGCAATTTG+GGG - chr3_4:68392705-68392724 Msa0516850:CDS 40.0%
GCATTAAAACCCCAAATTGC+AGG + chr3_4:68392717-68392736 None:intergenic 40.0%
GTTGGTTATGGAAACCGAAA+TGG - chr3_4:68392790-68392809 Msa0516850:CDS 40.0%
ATGCACAAAGAATCAGGGTT+TGG + chr3_4:68392939-68392958 None:intergenic 40.0%
GCACCATCATAGACCAATTA+TGG + chr3_4:68393174-68393193 None:intergenic 40.0%
CTATGCAGTTCTCAGAAATC+CGG - chr3_4:68393402-68393421 Msa0516850:CDS 40.0%
TCCGGTGAAGATACTTCTAA+TGG - chr3_4:68393420-68393439 Msa0516850:intron 40.0%
CTTGTTGAAGAGAAAGATGG+AGG - chr3_4:68393477-68393496 Msa0516850:intron 40.0%
TCTTCCTTGGATACAGATGA+TGG - chr3_4:68393500-68393519 Msa0516850:intron 40.0%
GCATATCATCCCATTTAGGT+CGG + chr3_4:68393753-68393772 None:intergenic 40.0%
CTCTGTCTTTACAGAAGAAG+GGG + chr3_4:68393958-68393977 None:intergenic 40.0%
ACATTATCGGGCGAAGAATA+TGG - chr3_4:68393981-68394000 Msa0516850:intron 40.0%
CATTATCGGGCGAAGAATAT+GGG - chr3_4:68393982-68394001 Msa0516850:intron 40.0%
TACCTTTGTGACGCAATAGT+AGG + chr3_4:68394020-68394039 None:intergenic 40.0%
!! TTGCTTTTCTTCCTTTCAGG+GGG - chr3_4:68394136-68394155 Msa0516850:CDS 40.0%
! CGTCTAGGTTTTTCTTGTCT+TGG + chr3_4:68394179-68394198 None:intergenic 40.0%
!! CACCGCTTGACTTGTTATAT+AGG - chr3_4:68394438-68394457 Msa0516850:intron 40.0%
GCTCTTCCATCATGAAGAAA+TGG - chr3_4:68394553-68394572 Msa0516850:intron 40.0%
CTTGGGAAATTGCAAAGCTT+GGG - chr3_4:68394582-68394601 Msa0516850:CDS 40.0%
TTGGGAAATTGCAAAGCTTG+GGG - chr3_4:68394583-68394602 Msa0516850:CDS 40.0%
ATGGTACAAAAGATTGAGCC+CGG - chr3_4:68394626-68394645 Msa0516850:CDS 40.0%
TTCTTGATAAGCGCGTAAAC+CGG + chr3_4:68394648-68394667 None:intergenic 40.0%
TACTTCTGACGACAAACCAA+AGG - chr3_4:68394796-68394815 Msa0516850:CDS 40.0%
ACTTCTGACGACAAACCAAA+GGG - chr3_4:68394797-68394816 Msa0516850:CDS 40.0%
AATGACTAGCATCTTCGGTA+CGG + chr3_4:68394828-68394847 None:intergenic 40.0%
! AGATAAAGGATTGGTGACCA+AGG - chr3_4:68394877-68394896 Msa0516850:exon 40.0%
GTGACCAAGGCTGTTATATT+TGG - chr3_4:68394890-68394909 Msa0516850:five_prime_UTR 40.0%
AGGTGGAATCAATCTCTTGA+AGG - chr3_4:68394965-68394984 Msa0516850:five_prime_UTR 40.0%
GGTGGAATCAATCTCTTGAA+GGG - chr3_4:68394966-68394985 Msa0516850:five_prime_UTR 40.0%
CATCCAAATGCGCATTACAT+TGG - chr3_4:68395019-68395038 Msa0516850:five_prime_UTR 40.0%
CAACCAATGTAATGCGCATT+TGG + chr3_4:68395025-68395044 None:intergenic 40.0%
! CGCATTACATTGGTTGATGT+TGG - chr3_4:68395029-68395048 Msa0516850:five_prime_UTR 40.0%
! GGTTGATGTTGGATCAAGAT+CGG - chr3_4:68395040-68395059 Msa0516850:five_prime_UTR 40.0%
GTTGATGTTGGATCAAGATC+GGG - chr3_4:68395041-68395060 Msa0516850:five_prime_UTR 40.0%
ACTGTTCGATCAAGATCCAA+TGG + chr3_4:68395132-68395151 None:intergenic 40.0%
ACGTGGATCATCCAAAACAA+TGG + chr3_4:68395221-68395240 None:intergenic 40.0%
CTTTCTCATTCCCCTAGATT+TGG + chr3_4:68395321-68395340 None:intergenic 40.0%
!! AAAGTCTCGGCTTGTTGATT+TGG - chr3_4:68395337-68395356 Msa0516850:five_prime_UTR 40.0%
!! AAGTCTCGGCTTGTTGATTT+GGG - chr3_4:68395338-68395357 Msa0516850:five_prime_UTR 40.0%
AATGGGAGTGAAGGAAATGG+AGG + chr3_4:68392009-68392028 None:intergenic 45.0%
GGAAATGGGAGTGAAGGAAA+TGG + chr3_4:68392012-68392031 None:intergenic 45.0%
ACGGCGTTTGATTGTTTGCT+TGG + chr3_4:68392053-68392072 None:intergenic 45.0%
! AAGGGGTATGTGGTTGAAGA+AGG + chr3_4:68392566-68392585 None:intergenic 45.0%
! TTTGGTGGGTGAAGAAGAAG+AGG + chr3_4:68392988-68393007 None:intergenic 45.0%
AGAAAGATGGAGGTCTTCCT+TGG - chr3_4:68393487-68393506 Msa0516850:intron 45.0%
TACTCCGACTATGAGTTACC+AGG - chr3_4:68393530-68393549 Msa0516850:intron 45.0%
CATGCCTGGTAACTCATAGT+CGG + chr3_4:68393537-68393556 None:intergenic 45.0%
TACTGCTTCGATATTGGGGA+GGG + chr3_4:68393672-68393691 None:intergenic 45.0%
TGAAGATGCAACTCCTGAGA+TGG - chr3_4:68393699-68393718 Msa0516850:intron 45.0%
AACAAATCCCTCACCATCTC+AGG + chr3_4:68393715-68393734 None:intergenic 45.0%
! AGATGGTGAGGGATTTGTTC+TGG - chr3_4:68393716-68393735 Msa0516850:intron 45.0%
! GATGGTGAGGGATTTGTTCT+GGG - chr3_4:68393717-68393736 Msa0516850:intron 45.0%
!! TTAGAAGAGTGTCCTACCAC+TGG - chr3_4:68393790-68393809 Msa0516850:CDS 45.0%
ACTTTCATGGTTCCAGTGGT+AGG + chr3_4:68393805-68393824 None:intergenic 45.0%
TTGCACTTTCATGGTTCCAG+TGG + chr3_4:68393809-68393828 None:intergenic 45.0%
! CTGGAACCATGAAAGTGCAA+TGG - chr3_4:68393809-68393828 Msa0516850:CDS 45.0%
GTCCTACTATTGCGTCACAA+AGG - chr3_4:68394015-68394034 Msa0516850:CDS 45.0%
CCAAGCTTTGCAATTTCCCA+AGG + chr3_4:68394584-68394603 None:intergenic 45.0%
CCTTGGGAAATTGCAAAGCT+TGG - chr3_4:68394581-68394600 Msa0516850:CDS 45.0%
TCTTGATAAGCGCGTAAACC+GGG + chr3_4:68394647-68394666 None:intergenic 45.0%
CCTGAGTACTTGCAATCCAT+CGG - chr3_4:68394734-68394753 Msa0516850:CDS 45.0%
TTCATCATCAGAGGATCCGA+TGG + chr3_4:68394753-68394772 None:intergenic 45.0%
GTCAGAAGTAATCGCACTTC+CGG + chr3_4:68394786-68394805 None:intergenic 45.0%
GTACCGAAGATGCTAGTCAT+TGG - chr3_4:68394827-68394846 Msa0516850:CDS 45.0%
CCACCAATGACTAGCATCTT+CGG + chr3_4:68394833-68394852 None:intergenic 45.0%
CCAAAACAATGGCTTCGAGA+GGG + chr3_4:68395210-68395229 None:intergenic 45.0%
TCCAAAACAATGGCTTCGAG+AGG + chr3_4:68395211-68395230 None:intergenic 45.0%
CTAGGGGAATGAGAAAGTCT+CGG - chr3_4:68395324-68395343 Msa0516850:five_prime_UTR 45.0%
!! GCTTGTTGATTTGGGAGAGA+GGG - chr3_4:68395346-68395365 Msa0516850:five_prime_UTR 45.0%
!!! CTGTGGTTTTGACCTACTCA+TGG + chr3_4:68395411-68395430 None:intergenic 45.0%
!! TAACTTATTTATTTAATTAA+TGG + chr3_4:68393036-68393055 None:intergenic 5.0%
TGTGGTTGAAGAAGGAGCTG+TGG + chr3_4:68392558-68392577 None:intergenic 50.0%
CGACTATGAGTTACCAGGCA+TGG - chr3_4:68393535-68393554 Msa0516850:intron 50.0%
GTACTGCTTCGATATTGGGG+AGG + chr3_4:68393673-68393692 None:intergenic 50.0%
ATGCAACTCCTGAGATGGTG+AGG - chr3_4:68393704-68393723 Msa0516850:intron 50.0%
TGCAACTCCTGAGATGGTGA+GGG - chr3_4:68393705-68393724 Msa0516850:intron 50.0%
GGGCGAAGAATATGGGAATG+CGG - chr3_4:68393989-68394008 Msa0516850:intron 50.0%
GGCGAAGAATATGGGAATGC+GGG - chr3_4:68393990-68394009 Msa0516850:intron 50.0%
GAAGAATATGGGAATGCGGG+AGG - chr3_4:68393993-68394012 Msa0516850:intron 50.0%
AGGACAATCTACCCCCTGAA+AGG + chr3_4:68394150-68394169 None:intergenic 50.0%
! TCTAGTTGGTGCATTCGAGC+AGG - chr3_4:68394215-68394234 Msa0516850:intron 50.0%
ATGAAAGCGGAACGAGAGAG+TGG + chr3_4:68394689-68394708 None:intergenic 50.0%
ACTCTCTCGTTCCGCTTTCA+TGG - chr3_4:68394688-68394707 Msa0516850:CDS 50.0%
ATTGACACCGGCCATGAAAG+CGG + chr3_4:68394702-68394721 None:intergenic 50.0%
!! CCGATGGATTGCAAGTACTC+AGG + chr3_4:68394737-68394756 None:intergenic 50.0%
CCGAAGATGCTAGTCATTGG+TGG - chr3_4:68394830-68394849 Msa0516850:CDS 50.0%
GATGTTGGATCAAGATCGGG+CGG - chr3_4:68395044-68395063 Msa0516850:five_prime_UTR 50.0%
! CCCTCTCGAAGCCATTGTTT+TGG - chr3_4:68395207-68395226 Msa0516850:five_prime_UTR 50.0%
!! GGCTTGTTGATTTGGGAGAG+AGG - chr3_4:68395345-68395364 Msa0516850:five_prime_UTR 50.0%
! TTGGTTCTCTACGCCATGCC+TGG + chr3_4:68393551-68393570 None:intergenic 55.0%
GGCATGGCGTAGAGAACCAA+AGG - chr3_4:68393551-68393570 Msa0516850:CDS 55.0%
GCAAAGCTTGGGGTGCGAAA+AGG - chr3_4:68394593-68394612 Msa0516850:CDS 55.0%
! TTGGGGTGCGAAAAGGCATG+TGG - chr3_4:68394600-68394619 Msa0516850:CDS 55.0%
! TGGGGTGCGAAAAGGCATGT+GGG - chr3_4:68394601-68394620 Msa0516850:CDS 55.0%
! GCGAAAAGGCATGTGGGGAA+TGG - chr3_4:68394607-68394626 Msa0516850:CDS 55.0%
TCTCGTTCCGCTTTCATGGC+CGG - chr3_4:68394692-68394711 Msa0516850:CDS 55.0%
TTCGGTACGGTCATGCCCTT+TGG + chr3_4:68394815-68394834 None:intergenic 55.0%
! GGGGTGCGAAAAGGCATGTG+GGG - chr3_4:68394602-68394621 Msa0516850:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68391988 68395596 68391988 ID=Msa0516850;Name=Msa0516850
chr3_4 mRNA 68391988 68395596 68391988 ID=Msa0516850-mRNA-1;Parent=Msa0516850;Name=Msa0516850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=717|1|1|1|1|1|6|641|424
chr3_4 exon 68391988 68393077 68391988 ID=Msa0516850-mRNA-1:exon:18032;Parent=Msa0516850-mRNA-1
chr3_4 exon 68393348 68393429 68393348 ID=Msa0516850-mRNA-1:exon:18031;Parent=Msa0516850-mRNA-1
chr3_4 exon 68393548 68393631 68393548 ID=Msa0516850-mRNA-1:exon:18030;Parent=Msa0516850-mRNA-1
chr3_4 exon 68393744 68393920 68393744 ID=Msa0516850-mRNA-1:exon:18029;Parent=Msa0516850-mRNA-1
chr3_4 exon 68394012 68394174 68394012 ID=Msa0516850-mRNA-1:exon:18028;Parent=Msa0516850-mRNA-1
chr3_4 exon 68394560 68395596 68394560 ID=Msa0516850-mRNA-1:exon:18027;Parent=Msa0516850-mRNA-1
chr3_4 five_prime_UTR 68394880 68395596 68394880 ID=Msa0516850-mRNA-1:five_prime_utr;Parent=Msa0516850-mRNA-1
chr3_4 CDS 68394560 68394879 68394560 ID=Msa0516850-mRNA-1:cds;Parent=Msa0516850-mRNA-1
chr3_4 CDS 68394012 68394174 68394012 ID=Msa0516850-mRNA-1:cds;Parent=Msa0516850-mRNA-1
chr3_4 CDS 68393744 68393920 68393744 ID=Msa0516850-mRNA-1:cds;Parent=Msa0516850-mRNA-1
chr3_4 CDS 68393548 68393631 68393548 ID=Msa0516850-mRNA-1:cds;Parent=Msa0516850-mRNA-1
chr3_4 CDS 68393348 68393429 68393348 ID=Msa0516850-mRNA-1:cds;Parent=Msa0516850-mRNA-1
chr3_4 CDS 68392629 68393077 68392629 ID=Msa0516850-mRNA-1:cds;Parent=Msa0516850-mRNA-1
chr3_4 three_prime_UTR 68391988 68392628 68391988 ID=Msa0516850-mRNA-1:three_prime_utr;Parent=Msa0516850-mRNA-1
Gene Sequence

>Msa0516850

ATGGAAAACCCTGCAATTTGGGGTTTTAATGCAACGATGTTTATGAGTCCTATGTTGTTAGTGTTTTTCTTAGGAGTTATTGTTGGTTGGTTATGGAAACCGAAATGGATTGTTTCATTGGCTAAGTCTTTTGATTTAGCTTCACCAATTTCAGATTCTCCTATATTTTCGCCATTGAAATTCTATTCTTCTTTGTCTCCTTGTGTTAATTCTTCTATTACAATGCAAAATCCAAACCCTGATTCTTTGTGCATCAATAAAGAGATCAATAAAAAGGGTTCCTCTTCTTCTTCACCCACCAAATTTGATAGTTCCACAAGTTCTCAGAAATCCGGTGAAGATACTTCTAATGGTGTTACAATCGATGATTTACATCATTTATACAAGCTTGTTGAAGAGAAAGATGGAGGTCTTCCTTGGATACAGATGATGGATAAATCTACTCCGACTATGAGTTACCAGGCATGGCGTAGAGAACCAAAGGACGGCCCTCCCCAATATCGAAGCAGTACTATTTTTGAAGATGCAACTCCTGAGATGGTGAGGGATTTGTTCTGGGATGAACAATTCCGACCTAAATGGGATGATATGCTTGTGAACTCAACAACATTAGAAGAGTGTCCTACCACTGGAACCATGAAAGTGCAATGGATAAGAAAGTTCCCCTTCTTCTGTAAAGACAGAGAATACATTATCGGGCGAAGAATATGGGAATGCGGGAGGTCCTACTATTGCGTCACAAAGGGGGTAGATTGTCCTTCAATCCCAAGACAAGAAAAACCTAGACGTGTAGATGTGTATTACTCTAGTTGGTGCATTCGAGCAGTTGAATCAAAGAGAGATAATGGTCAACTGACTGCATGTGAAGTTTTGCTCTTCCATCATGAAGAAATGGGAATTCCTTGGGAAATTGCAAAGCTTGGGGTGCGAAAAGGCATGTGGGGAATGGTACAAAAGATTGAGCCCGGTTTACGCGCTTATCAAGAAGCAAAAGCTTCTGGAGCTCCACTCTCTCGTTCCGCTTTCATGGCCGGTGTCAATACAAAAATAAGTCCTGAGTACTTGCAATCCATCGGATCCTCTGATGATGAATCATTACAAACCGGAAGTGCGATTACTTCTGACGACAAACCAAAGGGCATGACCGTACCGAAGATGCTAGTCATTGGTGGTGCTGTTGCTCTTGCTTGTAGTCTAGATAAAGGATTGGTGACCAAGGCTGTTATATTTGGTGTTGCTAAAAGATTTGGATTTGCTAATTTGGGTAAAAGATAG
Protein sequence

>Msa0516850

MENPAIWGFNATMFMSPMLLVFFLGVIVGWLWKPKWIVSLAKSFDLASPISDSPIFSPLKFYSSLSPCVNSSITMQNPNPDSLCINKEINKKGSSSSSPTKFDSSTSSQKSGEDTSNGVTIDDLHHLYKLVEEKDGGLPWIQMMDKSTPTMSYQAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDEQFRPKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWECGRSYYCVTKGVDCPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEVLLFHHEEMGIPWEIAKLGVRKGMWGMVQKIEPGLRAYQEAKASGAPLSRSAFMAGVNTKISPEYLQSIGSSDDESLQTGSAITSDDKPKGMTVPKMLVIGGAVALACSLDKGLVTKAVIFGVAKRFGFANLGKR*