AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472240 MtrunA17_Chr3g0127861 97.170 424 12 0 1 424 1 424 0.0 857
Msa0472240 MtrunA17_Chr1g0189151 53.976 415 156 5 10 424 15 394 2.16e-161 460
Msa0472240 MtrunA17_Chr5g0395041 44.039 411 214 7 17 417 30 434 2.70e-114 341
Msa0472240 MtrunA17_Chr4g0000091 31.208 298 175 9 115 396 68 351 3.65e-37 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472240 AT1G64720.1 58.373 418 124 8 8 424 16 384 2.38e-169 480
Msa0472240 AT5G54170.1 53.477 417 169 8 20 416 16 427 1.05e-145 422
Msa0472240 AT4G14500.1 46.798 406 207 3 17 417 30 431 2.44e-126 372
Msa0472240 AT3G23080.1 45.320 406 203 5 17 417 26 417 2.60e-116 346
Msa0472240 AT3G23080.2 45.750 400 198 5 23 417 1 386 9.44e-116 344
Msa0472240 AT3G23080.3 45.750 400 198 5 23 417 1 386 9.44e-116 344
Msa0472240 AT4G14500.2 43.750 240 128 3 17 249 30 269 8.69e-60 197
Msa0472240 AT3G13062.1 32.993 294 180 8 119 402 84 370 2.10e-40 149
Msa0472240 AT3G13062.2 32.993 294 180 8 119 402 84 370 2.81e-40 149
Msa0472240 AT1G55960.1 32.770 296 177 8 116 396 80 368 6.48e-39 145
Msa0472240 AT3G13062.3 32.119 302 180 9 119 402 84 378 1.16e-37 141
Msa0472240 AT1G55960.2 30.034 293 158 9 119 396 83 343 1.64e-27 113

Find 188 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGGATTTGCTAATT+TGG 0.096001 3_3:+74648811 Msa0472240:CDS
AATAGTAATAATTTGGAATT+TGG 0.112440 3_3:-74646009 None:intergenic
TGAAGAGCCAATGAGTTATT+TGG 0.155566 3_3:-74646144 None:intergenic
TTACCACCACACTTTATATT+TGG 0.170666 3_3:+74646109 Msa0472240:five_prime_UTR
CAATGGAAAACCCTGCAATT+TGG 0.229635 3_3:+74646613 Msa0472240:exon
AGGTTTGAATAGTAATAATT+TGG 0.233820 3_3:-74646016 None:intergenic
ATCAATCTCTTGAAGGGATT+TGG 0.233935 3_3:+74648861 Msa0472240:three_prime_UTR
AAATAGTACTGCTTCGATAT+TGG 0.237005 3_3:-74647576 None:intergenic
CAATAAAGAGATCAATAAAA+AGG 0.238323 3_3:+74646869 Msa0472240:CDS
TCTTATCCATTGCACTTTCA+TGG 0.240540 3_3:-74647716 None:intergenic
ACATTATCGGGCGAAGAATA+TGG 0.249260 3_3:+74647882 Msa0472240:CDS
TTTGGTGTTGCTAAAAGATT+TGG 0.250029 3_3:+74648797 Msa0472240:CDS
AATGGAAAACCCTGCAATTT+GGG 0.252814 3_3:+74646614 Msa0472240:exon
AAAGTCTCGGCTTGTTGATT+TGG 0.257188 3_3:+74649226 Msa0472240:three_prime_UTR
AGATGGTGAGGGATTTGTTC+TGG 0.264325 3_3:+74647617 Msa0472240:CDS
TAAACCAAAACCACTCTAAT+TGG 0.265319 3_3:+74646230 Msa0472240:five_prime_UTR
AGTTTATTTCACCCTCTTAA+AGG 0.266705 3_3:+74646568 Msa0472240:five_prime_UTR
CCCTCTTGAAGCCATTGTTT+TGG 0.269675 3_3:+74649096 Msa0472240:three_prime_UTR
ATGATCAATTCCGACCTAAA+TGG 0.274607 3_3:+74647641 Msa0472240:CDS
TGAACCAATTAGAGTGGTTT+TGG 0.278685 3_3:-74646234 None:intergenic
CCTTGTGGAACTGTCAAATT+TGG 0.278755 3_3:-74646913 None:intergenic
AGATTTGGATTTGCTAATTT+GGG 0.278788 3_3:+74648812 Msa0472240:CDS
ACTCTCTCGTTCCGCTTTCA+TGG 0.280943 3_3:+74648577 Msa0472240:CDS
GAGTTATTGTTGGTTGGTTA+TGG 0.284197 3_3:+74646688 Msa0472240:CDS
TGGTCCTAGGGAAAATTAAA+TGG 0.295109 3_3:-74645937 None:intergenic
AATAGTACTGCTTCGATATT+GGG 0.295359 3_3:-74647575 None:intergenic
GAAGAGCCAATGAGTTATTT+GGG 0.295858 3_3:-74646143 None:intergenic
GTGACCAAGGCTGTTATATT+TGG 0.297239 3_3:+74648779 Msa0472240:CDS
ATTTGAGGAGAAGAATAATT+AGG 0.297481 3_3:-74646439 None:intergenic
CTTTCTCATTCCCCTAGATT+TGG 0.311325 3_3:-74649207 None:intergenic
ACCGAAATGGATTGTTTCAT+TGG 0.320605 3_3:+74646713 Msa0472240:CDS
TTATTGATGCACAAAGAATC+AGG 0.325112 3_3:-74646852 None:intergenic
TATCAAGAAGCAAAAGCTTC+TGG 0.334002 3_3:+74648548 Msa0472240:CDS
AATATAGGAGAATCTGAAAT+TGG 0.334138 3_3:-74646759 None:intergenic
TAGGGAAAATTAAATGGAAA+TGG 0.334646 3_3:-74645931 None:intergenic
GCTCTTCCATCATGAAGAAA+TGG 0.335228 3_3:+74648442 Msa0472240:CDS
ACAAGCATATCATCCCATTT+AGG 0.342967 3_3:-74647655 None:intergenic
GCCAATGAAACAATCCATTT+CGG 0.348500 3_3:-74646714 None:intergenic
GCATTAAAACCCCAAATTGC+AGG 0.348790 3_3:-74646624 None:intergenic
AAGTCTCGGCTTGTTGATTT+GGG 0.349338 3_3:+74649227 Msa0472240:three_prime_UTR
CTTGGGAAATTGCAAAGCTT+GGG 0.351239 3_3:+74648471 Msa0472240:CDS
CTTGCTTGTAGTCTAGATAA+AGG 0.357837 3_3:+74648752 Msa0472240:CDS
TATGAAGAAGAAATGTGAAT+AGG 0.357876 3_3:-74646265 None:intergenic
TTCTTGATAAGCGCGTAAAC+CGG 0.360902 3_3:-74648534 None:intergenic
TTCTCTGTCTTTACAGAAGA+AGG 0.369154 3_3:-74647858 None:intergenic
CCTTGGGAAATTGCAAAGCT+TGG 0.380072 3_3:+74648470 Msa0472240:CDS
ATGCACAAAGAATCAGGGTT+TGG 0.389553 3_3:-74646846 None:intergenic
TTCGGTACGGTCATGCCCTT+TGG 0.391532 3_3:-74648701 None:intergenic
TTAATTGTTTGCTTGGTCCT+AGG 0.391540 3_3:-74645950 None:intergenic
ATGAAGAAGAAATGTGAATA+GGG 0.392048 3_3:-74646264 None:intergenic
GTCAGAAGTAATCGCACTTT+CGG 0.393685 3_3:-74648672 None:intergenic
GTTTATTTCACCCTCTTAAA+GGG 0.396971 3_3:+74646569 Msa0472240:five_prime_UTR
TTTGTGTTGGAGAATTTGTT+AGG 0.407127 3_3:-74646193 None:intergenic
GTTGGTTATGGAAACCGAAA+TGG 0.409722 3_3:+74646700 Msa0472240:CDS
GTTGAATCAAAGAGAGATAA+TGG 0.410181 3_3:+74648395 Msa0472240:intron
AAGGAGCTGTGGAATATTTG+AGG 0.414935 3_3:-74646454 None:intergenic
ACGGTGTTTAATTGTTTGCT+TGG 0.419032 3_3:-74645957 None:intergenic
AATTTCAATGGCGAAAATAT+AGG 0.421810 3_3:-74646774 None:intergenic
AAGTTTCAAAACCCTTTAAG+AGG 0.424066 3_3:-74646580 None:intergenic
CGCATTACATTGGTTGATGT+TGG 0.425042 3_3:+74648918 Msa0472240:three_prime_UTR
CTCTTCCATCATGAAGAAAT+GGG 0.425947 3_3:+74648443 Msa0472240:CDS
TCTCGTTCCGCTTTCATGGC+CGG 0.427496 3_3:+74648581 Msa0472240:CDS
ATGAAGAAATGGGAATTCCT+TGG 0.434331 3_3:+74648453 Msa0472240:CDS
AGAAAGAAGATAAGAAGAAG+AGG 0.435078 3_3:-74646318 None:intergenic
AACAAATCCCTCACCATCTC+AGG 0.435785 3_3:-74647613 None:intergenic
GAAGGAAATTGAGGTATTAG+TGG 0.435878 3_3:-74645904 None:intergenic
CATTATCGGGCGAAGAATAT+GGG 0.439592 3_3:+74647883 Msa0472240:CDS
AAAGACAGAGAATACATTAT+CGG 0.440471 3_3:+74647869 Msa0472240:CDS
TGATCAATTCCGACCTAAAT+GGG 0.441777 3_3:+74647642 Msa0472240:CDS
TCTTAGGAGTTATTGTTGGT+TGG 0.448664 3_3:+74646682 Msa0472240:CDS
TCCGGTGAAGATACTTCTAA+TGG 0.456041 3_3:+74647321 Msa0472240:CDS
TAATTGTTTGCTTGGTCCTA+GGG 0.456757 3_3:-74645949 None:intergenic
AGAAAGATGGAGGTCTTCCT+TGG 0.462865 3_3:+74647388 Msa0472240:CDS
AAACATTCACATGGTAAAGT+TGG 0.463882 3_3:+74649399 Msa0472240:three_prime_UTR
GATGGTGAGGGATTTGTTCT+GGG 0.463908 3_3:+74647618 Msa0472240:CDS
TGAAGAAATGGGAATTCCTT+GGG 0.464197 3_3:+74648454 Msa0472240:CDS
AGGGAAAATTAAATGGAAAT+GGG 0.466993 3_3:-74645930 None:intergenic
GTTAGGTGTTGTGTTTGTGT+TGG 0.472614 3_3:-74646206 None:intergenic
TTGGTTCTCTACGCCATGCC+TGG 0.479368 3_3:-74647449 None:intergenic
CCACCAATGACTAGCATCTT+CGG 0.484556 3_3:-74648719 None:intergenic
GCAAAGCTTGGGGTGCGAAA+AGG 0.484622 3_3:+74648482 Msa0472240:CDS
CTATGCAGTTCTCAGAAATC+CGG 0.487042 3_3:+74647303 Msa0472240:intron
GAATTCCCATTTCTTCATGA+TGG 0.489686 3_3:-74648448 None:intergenic
AGATTCCCCAAATAACTCAT+TGG 0.490673 3_3:+74646137 Msa0472240:five_prime_UTR
CATTCAAATGCGCATTACAT+TGG 0.491198 3_3:+74648908 Msa0472240:three_prime_UTR
GGCGAAGAATATGGGAATGC+GGG 0.499090 3_3:+74647891 Msa0472240:CDS
AAAGAAGAATAGAATTTCAA+TGG 0.502415 3_3:-74646786 None:intergenic
AGGTGGAATCAATCTCTTGA+AGG 0.504620 3_3:+74648854 Msa0472240:three_prime_UTR
AAGGGGTATGTGGTTGAAGA+AGG 0.505565 3_3:-74646473 None:intergenic
GAGTTTGAAATTTAGACCAT+TGG 0.506045 3_3:+74649002 Msa0472240:three_prime_UTR
AAGACAGAGAATACATTATC+GGG 0.507509 3_3:+74647870 Msa0472240:CDS
TCTAGTTGGTGCATTCGAGC+AGG 0.509639 3_3:+74648103 Msa0472240:CDS
AAGAGGGTGAAATAAACTAA+AGG 0.510097 3_3:-74646563 None:intergenic
AGAGGGTGAAATAAACTAAA+GGG 0.510899 3_3:-74646562 None:intergenic
AATGCGTTCTGAGGAAACTA+AGG 0.512423 3_3:-74646508 None:intergenic
GAAGAAATGTGAATAGGGAT+AGG 0.514206 3_3:-74646259 None:intergenic
TCCAAAACAATGGCTTCAAG+AGG 0.515874 3_3:-74649097 None:intergenic
TCTCTGTCTTTACAGAAGAA+GGG 0.516792 3_3:-74647857 None:intergenic
GCGAAAAGGCATGTGGGGAA+TGG 0.521022 3_3:+74648496 Msa0472240:CDS
TCTTCCTTGGATACAGATGA+TGG 0.524577 3_3:+74647401 Msa0472240:CDS
TCCATCGGATCCTCTGATGA+TGG 0.527053 3_3:+74648638 Msa0472240:CDS
CCAAGCTTTGCAATTTCCCA+AGG 0.529721 3_3:-74648470 None:intergenic
GTTGATGTTGGATCAAGATC+GGG 0.529886 3_3:+74648930 Msa0472240:three_prime_UTR
TCTTGATAAGCGCGTAAACC+GGG 0.530261 3_3:-74648533 None:intergenic
CTCTGTCTTTACAGAAGAAG+GGG 0.532991 3_3:-74647856 None:intergenic
GTAAAAGATAGTAGAACTAA+AGG 0.533449 3_3:+74648834 Msa0472240:exon
CATTAAAACCCCAAATTGCA+GGG 0.535660 3_3:-74646623 None:intergenic
TGATGTTGGAATTGAAAATG+AGG 0.539227 3_3:-74646036 None:intergenic
TTGGGGTGCGAAAAGGCATG+TGG 0.540671 3_3:+74648489 Msa0472240:CDS
GAAAGAAGATAAGAAGAAGA+GGG 0.540918 3_3:-74646317 None:intergenic
TACCTTTGTGACGCAATAGT+AGG 0.544173 3_3:-74647918 None:intergenic
ACCATTAGAAGTATCTTCAC+CGG 0.545080 3_3:-74647322 None:intergenic
TTAAATGGAAATGGGAGTGA+AGG 0.546440 3_3:-74645922 None:intergenic
TGGGGTGCGAAAAGGCATGT+GGG 0.547657 3_3:+74648490 Msa0472240:CDS
GGTTGATGTTGGATCAAGAT+CGG 0.547690 3_3:+74648929 Msa0472240:three_prime_UTR
AAGCTTGTTGAAGAGAAAGA+TGG 0.548875 3_3:+74647375 Msa0472240:CDS
GGTGGAATCAATCTCTTGAA+GGG 0.550268 3_3:+74648855 Msa0472240:three_prime_UTR
AAAGATAGTAGAACTAAAGG+TGG 0.551418 3_3:+74648837 Msa0472240:exon
ATGGTACAAAAGATTGAGCC+CGG 0.553382 3_3:+74648515 Msa0472240:CDS
AACACCAAATATAACAGCCT+TGG 0.555762 3_3:-74648783 None:intergenic
CACAGAGTTTATAAATTCTG+TGG 0.557769 3_3:-74649314 None:intergenic
AATGGGAGTGAAGGAAATTG+AGG 0.558197 3_3:-74645913 None:intergenic
GAAAGTGCAATGGATAAGAA+AGG 0.560742 3_3:+74647720 Msa0472240:CDS
GTACCGAAGATGCTAGTCAT+TGG 0.562943 3_3:+74648716 Msa0472240:CDS
TTGGGAAATTGCAAAGCTTG+GGG 0.564589 3_3:+74648472 Msa0472240:CDS
TTGCACTTTCATGGTTCCAG+TGG 0.567434 3_3:-74647707 None:intergenic
TATTGATGCACAAAGAATCA+GGG 0.567482 3_3:-74646851 None:intergenic
TGTGGAACTGTCAAATTTGG+TGG 0.569151 3_3:-74646910 None:intergenic
ACTTTCATGGTTCCAGTGGT+AGG 0.569928 3_3:-74647703 None:intergenic
TTAGAAGAGTGTCCTACCAC+TGG 0.570104 3_3:+74647691 Msa0472240:CDS
AGTTTCAAAACCCTTTAAGA+GGG 0.570957 3_3:-74646579 None:intergenic
TTTATTACTTCAAAATGTGG+AGG 0.572509 3_3:+74649149 Msa0472240:three_prime_UTR
TAGATGTGTATTACTCTAGT+TGG 0.573803 3_3:+74648089 Msa0472240:CDS
GCTTGTTGATTTGGGAGAGA+GGG 0.574652 3_3:+74649235 Msa0472240:three_prime_UTR
ATGCAACTCCTGAGATGGTG+AGG 0.574823 3_3:+74647605 Msa0472240:CDS
TTATCCATCATCTGTATCCA+AGG 0.580476 3_3:-74647405 None:intergenic
TAATACACATCTACACGTCT+AGG 0.582676 3_3:-74648079 None:intergenic
GGCTTGTTGATTTGGGAGAG+AGG 0.583955 3_3:+74649234 Msa0472240:three_prime_UTR
CTAGGGGAATGAGAAAGTCT+CGG 0.584830 3_3:+74649213 Msa0472240:three_prime_UTR
CCGAAGATGCTAGTCATTGG+TGG 0.584906 3_3:+74648719 Msa0472240:CDS
CCTGGGTACTTGCAATCCAT+CGG 0.585116 3_3:+74648623 Msa0472240:CDS
TACTTCTGACGACAAACCAA+AGG 0.589022 3_3:+74648685 Msa0472240:CDS
ATGAAAGCGGAACGAGAGAG+TGG 0.589867 3_3:-74648575 None:intergenic
GAGTTATTTGGGGAATCTAG+AGG 0.590288 3_3:-74646132 None:intergenic
AAGAGCCAATGAGTTATTTG+GGG 0.590619 3_3:-74646142 None:intergenic
TTTGGTGGGTGAAGAAGAAG+AGG 0.592927 3_3:-74646895 None:intergenic
CGACTATGAGTTACCAGGCA+TGG 0.594580 3_3:+74647436 Msa0472240:CDS
TTGTTATAGAATGCGTTCTG+AGG 0.596541 3_3:-74646517 None:intergenic
TGAATTCTTAGACCATGAGT+AGG 0.598691 3_3:+74649285 Msa0472240:three_prime_UTR
TGAAGATGCAACTCCTGAGA+TGG 0.599312 3_3:+74647600 Msa0472240:CDS
ATGGAAAACCCTGCAATTTG+GGG 0.599898 3_3:+74646615 Msa0472240:CDS
ACTTCTGACGACAAACCAAA+GGG 0.601183 3_3:+74648686 Msa0472240:CDS
TACTGCTTCGATATTGGGGA+GGG 0.606720 3_3:-74647570 None:intergenic
ACTGTTCGATCAAGATCCAA+TGG 0.611534 3_3:-74649018 None:intergenic
TCCATCATCAGAGGATCCGA+TGG 0.612428 3_3:-74648639 None:intergenic
TTGTAGTCTAGATAAAGGAT+TGG 0.612824 3_3:+74648757 Msa0472240:CDS
AATGACTAGCATCTTCGGTA+CGG 0.620562 3_3:-74648714 None:intergenic
CTGGAACCATGAAAGTGCAA+TGG 0.622256 3_3:+74647710 Msa0472240:CDS
TAGGAATGAACCAATTAGAG+TGG 0.623041 3_3:-74646240 None:intergenic
GGGCGAAGAATATGGGAATG+CGG 0.625266 3_3:+74647890 Msa0472240:CDS
ATAGTACTGCTTCGATATTG+GGG 0.625450 3_3:-74647574 None:intergenic
CCAAAACAATGGCTTCAAGA+GGG 0.625971 3_3:-74649096 None:intergenic
GTGGAACTGTCAAATTTGGT+GGG 0.626311 3_3:-74646909 None:intergenic
TGTGGTTGAAGAAGGAGCTG+TGG 0.626852 3_3:-74646465 None:intergenic
GAAGAATATGGGAATGCGGG+AGG 0.627874 3_3:+74647894 Msa0472240:CDS
GGCATGGCGTAGAGAACCAA+AGG 0.628323 3_3:+74647452 Msa0472240:CDS
GGGGTGCGAAAAGGCATGTG+GGG 0.628732 3_3:+74648491 Msa0472240:CDS
GCATATCATCCCATTTAGGT+CGG 0.629636 3_3:-74647651 None:intergenic
TGCAACTCCTGAGATGGTGA+GGG 0.632971 3_3:+74647606 Msa0472240:CDS
ATTGACACCGGCCATGAAAG+CGG 0.633342 3_3:-74648588 None:intergenic
CCGATGGATTGCAAGTACCC+AGG 0.634493 3_3:-74648623 None:intergenic
TGGTAAAACGAGTGATGTGA+AGG 0.634891 3_3:-74646092 None:intergenic
ACGTGGATCATCCAAAACAA+TGG 0.639277 3_3:-74649107 None:intergenic
CACAGAATTTATAAACTCTG+TGG 0.639708 3_3:+74649315 Msa0472240:three_prime_UTR
TAGAGGCCAAATATAAAGTG+TGG 0.640061 3_3:-74646115 None:intergenic
TTGTAATGATCCATCATCAG+AGG 0.643905 3_3:-74648648 None:intergenic
CATGCCTGGTAACTCATAGT+CGG 0.646187 3_3:-74647435 None:intergenic
AGGCCAAATATAAAGTGTGG+TGG 0.647076 3_3:-74646112 None:intergenic
GTCCTACTATTGCGTCACAA+AGG 0.655181 3_3:+74647916 Msa0472240:CDS
GTACTGCTTCGATATTGGGG+AGG 0.655617 3_3:-74647571 None:intergenic
GGAAACTATAATGGATAACG+TGG 0.662024 3_3:-74649124 None:intergenic
CCAAATTTGACAGTTCCACA+AGG 0.662436 3_3:+74646913 Msa0472240:CDS
TACTCCGACTATGAGTTACC+AGG 0.668614 3_3:+74647431 Msa0472240:CDS
CTTGTTGAAGAGAAAGATGG+AGG 0.668763 3_3:+74647378 Msa0472240:CDS
AGATAAAGGATTGGTGACCA+AGG 0.675087 3_3:+74648766 Msa0472240:CDS
ATGTATTGTAAACATTCACA+TGG 0.678770 3_3:+74649390 Msa0472240:three_prime_UTR
GATGTTGGATCAAGATCGGG+TGG 0.680745 3_3:+74648933 Msa0472240:three_prime_UTR
GTAATAGAAGAATTAACACA+AGG 0.716696 3_3:-74646813 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTAATAATTTGGAATT+TGG - chr3_3:74646012-74646031 None:intergenic 15.0%
!! AATTAAAAAGATGACAAAAT+TGG - chr3_3:74646413-74646432 None:intergenic 15.0%
!!! ACAAAAAAAATCAAATTTTG+AGG + chr3_3:74646536-74646555 Msa0472240:five_prime_UTR 15.0%
!!! CAAAAAAAATCAAATTTTGA+GGG + chr3_3:74646537-74646556 Msa0472240:five_prime_UTR 15.0%
!! AATAAAGAGATCAATAAAAA+GGG + chr3_3:74646870-74646889 Msa0472240:CDS 15.0%
!! TAATAAAAAGGAAACTATAA+TGG - chr3_3:74649136-74649155 None:intergenic 15.0%
!! ATTATAAAAAAACCAAATCT+AGG + chr3_3:74649195-74649214 Msa0472240:three_prime_UTR 15.0%
!! TTATAAAAAAACCAAATCTA+GGG + chr3_3:74649196-74649215 Msa0472240:three_prime_UTR 15.0%
!!! TCTAAGTTTTGTCAATTTAA+CGG - chr3_3:74645979-74645998 None:intergenic 20.0%
!! AGGTTTGAATAGTAATAATT+TGG - chr3_3:74646019-74646038 None:intergenic 20.0%
!! TAAGGAGAAAAAATTAAAAG+GGG - chr3_3:74646493-74646512 None:intergenic 20.0%
!! CTAAGGAGAAAAAATTAAAA+GGG - chr3_3:74646494-74646513 None:intergenic 20.0%
!! ACTAAGGAGAAAAAATTAAA+AGG - chr3_3:74646495-74646514 None:intergenic 20.0%
!! AAAGAAGAATAGAATTTCAA+TGG - chr3_3:74646789-74646808 None:intergenic 20.0%
!! CAATAAAGAGATCAATAAAA+AGG + chr3_3:74646869-74646888 Msa0472240:CDS 20.0%
!! CAATTGAATTAATCCATAAT+TGG + chr3_3:74647059-74647078 Msa0472240:intron 20.0%
!! ATAAAGCTAATTTGGATATT+TGG + chr3_3:74647152-74647171 Msa0472240:intron 20.0%
!!! TTTTCAAACTTATCCAAAAT+TGG - chr3_3:74647182-74647201 None:intergenic 20.0%
!! TTTGGATAAGTTTGAAAATT+TGG + chr3_3:74647184-74647203 Msa0472240:intron 20.0%
!! TTGGATAAGTTTGAAAATTT+GGG + chr3_3:74647185-74647204 Msa0472240:intron 20.0%
!! TAATTTGAAAACTCAATAGA+AGG - chr3_3:74647518-74647537 None:intergenic 20.0%
!!! TTTTGTATTGTTGATTCAAT+AGG + chr3_3:74647543-74647562 Msa0472240:intron 20.0%
!!! CACATTTTGAAGTAATAAAA+AGG - chr3_3:74649148-74649167 None:intergenic 20.0%
!!! CTTTTTATTACTTCAAAATG+TGG + chr3_3:74649146-74649165 Msa0472240:three_prime_UTR 20.0%
!! TATAAAAAAACCAAATCTAG+GGG + chr3_3:74649197-74649216 Msa0472240:three_prime_UTR 20.0%
!!! ATAGAATACTTTTATTGCTT+CGG - chr3_3:74649353-74649372 None:intergenic 20.0%
! AGGGAAAATTAAATGGAAAT+GGG - chr3_3:74645933-74645952 None:intergenic 25.0%
! TAGGGAAAATTAAATGGAAA+TGG - chr3_3:74645934-74645953 None:intergenic 25.0%
!!! ATTTCCATTTAATTTTCCCT+AGG + chr3_3:74645933-74645952 Msa0472240:five_prime_UTR 25.0%
!!! AATAGTGTTGATTTTGATGT+TGG - chr3_3:74646053-74646072 None:intergenic 25.0%
! ATGAAGAAGAAATGTGAATA+GGG - chr3_3:74646267-74646286 None:intergenic 25.0%
! TATGAAGAAGAAATGTGAAT+AGG - chr3_3:74646268-74646287 None:intergenic 25.0%
! AGAGAAAGACAAAAAGATAT+GGG - chr3_3:74646369-74646388 None:intergenic 25.0%
! AAGAGAAAGACAAAAAGATA+TGG - chr3_3:74646370-74646389 None:intergenic 25.0%
! CAAAATTGGTGAAAAAAAAG+AGG - chr3_3:74646399-74646418 None:intergenic 25.0%
! ATTTGAGGAGAAGAATAATT+AGG - chr3_3:74646442-74646461 None:intergenic 25.0%
!! AAAAAATTAAAAGGGGTATG+TGG - chr3_3:74646486-74646505 None:intergenic 25.0%
!!! GAAACTTTTTCTTGTTACAA+TGG + chr3_3:74646596-74646615 Msa0472240:exon 25.0%
! AAGAAAAACACTAACAACAT+AGG - chr3_3:74646666-74646685 None:intergenic 25.0%
!! ATGTTGTTAGTGTTTTTCTT+AGG + chr3_3:74646666-74646685 Msa0472240:CDS 25.0%
!! TTTTTCTTAGGAGTTATTGT+TGG + chr3_3:74646678-74646697 Msa0472240:CDS 25.0%
!! AATATAGGAGAATCTGAAAT+TGG - chr3_3:74646762-74646781 None:intergenic 25.0%
! AATTTCAATGGCGAAAATAT+AGG - chr3_3:74646777-74646796 None:intergenic 25.0%
! GTAATAGAAGAATTAACACA+AGG - chr3_3:74646816-74646835 None:intergenic 25.0%
! ATTAATGGAAAATTACCTTG+TGG - chr3_3:74646931-74646950 None:intergenic 25.0%
!! TTCATGTTTTTCTGTTATTG+AGG + chr3_3:74646974-74646993 Msa0472240:intron 25.0%
!! TTTTCTGTTATTGAGGAATT+AGG + chr3_3:74646981-74647000 Msa0472240:intron 25.0%
! AATTGGGAATTAAAGATAGT+AGG + chr3_3:74647129-74647148 Msa0472240:intron 25.0%
! ATAGTAGGATAAAGCTAATT+TGG + chr3_3:74647144-74647163 Msa0472240:intron 25.0%
!! GATATTTGGTTAACCAATTT+TGG + chr3_3:74647166-74647185 Msa0472240:intron 25.0%
! GCATTGTTTGAATGTTTAAT+TGG + chr3_3:74647242-74647261 Msa0472240:intron 25.0%
! TTTGAATGTTTAATTGGCTA+TGG + chr3_3:74647248-74647267 Msa0472240:intron 25.0%
! AAAGACAGAGAATACATTAT+CGG + chr3_3:74647869-74647888 Msa0472240:CDS 25.0%
!!! ACTTATTTTTGTATTGACAC+CGG - chr3_3:74648603-74648622 None:intergenic 25.0%
! TCAATACAAAAATAAGTCCT+GGG + chr3_3:74648606-74648625 Msa0472240:CDS 25.0%
!!! AAGATTTGGATTTGCTAATT+TGG + chr3_3:74648811-74648830 Msa0472240:CDS 25.0%
!!! AGATTTGGATTTGCTAATTT+GGG + chr3_3:74648812-74648831 Msa0472240:CDS 25.0%
! GTAAAAGATAGTAGAACTAA+AGG + chr3_3:74648834-74648853 Msa0472240:exon 25.0%
! TTTATTACTTCAAAATGTGG+AGG + chr3_3:74649149-74649168 Msa0472240:three_prime_UTR 25.0%
! ATGTATTGTAAACATTCACA+TGG + chr3_3:74649390-74649409 Msa0472240:three_prime_UTR 25.0%
TGATGTTGGAATTGAAAATG+AGG - chr3_3:74646039-74646058 None:intergenic 30.0%
TTACCACCACACTTTATATT+TGG + chr3_3:74646109-74646128 Msa0472240:five_prime_UTR 30.0%
! TTTGTGTTGGAGAATTTGTT+AGG - chr3_3:74646196-74646215 None:intergenic 30.0%
TAAACCAAAACCACTCTAAT+TGG + chr3_3:74646230-74646249 Msa0472240:five_prime_UTR 30.0%
!!! GGTTTTGTTTTTATGGGTTT+GGG - chr3_3:74646299-74646318 None:intergenic 30.0%
!!! GAAGAGGGTTTTGTTTTTAT+GGG - chr3_3:74646305-74646324 None:intergenic 30.0%
!!! AGAAGAGGGTTTTGTTTTTA+TGG - chr3_3:74646306-74646325 None:intergenic 30.0%
GAAAGAAGATAAGAAGAAGA+GGG - chr3_3:74646320-74646339 None:intergenic 30.0%
AGAAAGAAGATAAGAAGAAG+AGG - chr3_3:74646321-74646340 None:intergenic 30.0%
!!! TGTTTTGATTAAGACGTGAA+GGG - chr3_3:74646345-74646364 None:intergenic 30.0%
GAGAAAGACAAAAAGATATG+GGG - chr3_3:74646368-74646387 None:intergenic 30.0%
AGAGGGTGAAATAAACTAAA+GGG - chr3_3:74646565-74646584 None:intergenic 30.0%
AAGAGGGTGAAATAAACTAA+AGG - chr3_3:74646566-74646585 None:intergenic 30.0%
AGTTTATTTCACCCTCTTAA+AGG + chr3_3:74646568-74646587 Msa0472240:five_prime_UTR 30.0%
GTTTATTTCACCCTCTTAAA+GGG + chr3_3:74646569-74646588 Msa0472240:five_prime_UTR 30.0%
! AGTTTCAAAACCCTTTAAGA+GGG - chr3_3:74646582-74646601 None:intergenic 30.0%
AAGTTTCAAAACCCTTTAAG+AGG - chr3_3:74646583-74646602 None:intergenic 30.0%
TATTGATGCACAAAGAATCA+GGG - chr3_3:74646854-74646873 None:intergenic 30.0%
TTATTGATGCACAAAGAATC+AGG - chr3_3:74646855-74646874 None:intergenic 30.0%
! GGAATTAGGTAGATGATTTT+TGG + chr3_3:74646995-74647014 Msa0472240:intron 30.0%
! AATCCATAATTGGTCTATGA+TGG + chr3_3:74647069-74647088 Msa0472240:intron 30.0%
TCCTTAACTACTAGTGAAAT+TGG + chr3_3:74647112-74647131 Msa0472240:intron 30.0%
CCTTAACTACTAGTGAAATT+GGG + chr3_3:74647113-74647132 Msa0472240:intron 30.0%
!! GTATTGTTGATTCAATAGGA+CGG + chr3_3:74647547-74647566 Msa0472240:intron 30.0%
AATAGTACTGCTTCGATATT+GGG - chr3_3:74647578-74647597 None:intergenic 30.0%
AAATAGTACTGCTTCGATAT+TGG - chr3_3:74647579-74647598 None:intergenic 30.0%
TCAAATCAAATCAAGCGAAA+AGG - chr3_3:74647753-74647772 None:intergenic 30.0%
AAGACAGAGAATACATTATC+GGG + chr3_3:74647870-74647889 Msa0472240:CDS 30.0%
! TTGAAGTCATTGATTGAAGA+TGG + chr3_3:74647961-74647980 Msa0472240:intron 30.0%
!! TATTTGCTTTTCTTCCTTTC+AGG + chr3_3:74648021-74648040 Msa0472240:intron 30.0%
!! ATTTGCTTTTCTTCCTTTCA+GGG + chr3_3:74648022-74648041 Msa0472240:intron 30.0%
TAGATGTGTATTACTCTAGT+TGG + chr3_3:74648089-74648108 Msa0472240:CDS 30.0%
GTTGAATCAAAGAGAGATAA+TGG + chr3_3:74648395-74648414 Msa0472240:intron 30.0%
GTCAATACAAAAATAAGTCC+TGG + chr3_3:74648605-74648624 Msa0472240:CDS 30.0%
TTGTAGTCTAGATAAAGGAT+TGG + chr3_3:74648757-74648776 Msa0472240:CDS 30.0%
!! TTTGGTGTTGCTAAAAGATT+TGG + chr3_3:74648797-74648816 Msa0472240:CDS 30.0%
AAAGATAGTAGAACTAAAGG+TGG + chr3_3:74648837-74648856 Msa0472240:exon 30.0%
! GAGTTTGAAATTTAGACCAT+TGG + chr3_3:74649002-74649021 Msa0472240:three_prime_UTR 30.0%
CACAGAGTTTATAAATTCTG+TGG - chr3_3:74649317-74649336 None:intergenic 30.0%
CACAGAATTTATAAACTCTG+TGG + chr3_3:74649315-74649334 Msa0472240:three_prime_UTR 30.0%
AAACATTCACATGGTAAAGT+TGG + chr3_3:74649399-74649418 Msa0472240:three_prime_UTR 30.0%
! GAAGGAAATTGAGGTATTAG+TGG - chr3_3:74645907-74645926 None:intergenic 35.0%
TTAAATGGAAATGGGAGTGA+AGG - chr3_3:74645925-74645944 None:intergenic 35.0%
TGGTCCTAGGGAAAATTAAA+TGG - chr3_3:74645940-74645959 None:intergenic 35.0%
TAATTGTTTGCTTGGTCCTA+GGG - chr3_3:74645952-74645971 None:intergenic 35.0%
TTAATTGTTTGCTTGGTCCT+AGG - chr3_3:74645953-74645972 None:intergenic 35.0%
ACGGTGTTTAATTGTTTGCT+TGG - chr3_3:74645960-74645979 None:intergenic 35.0%
TAGAGGCCAAATATAAAGTG+TGG - chr3_3:74646118-74646137 None:intergenic 35.0%
AGATTCCCCAAATAACTCAT+TGG + chr3_3:74646137-74646156 Msa0472240:five_prime_UTR 35.0%
AAGAGCCAATGAGTTATTTG+GGG - chr3_3:74646145-74646164 None:intergenic 35.0%
GAAGAGCCAATGAGTTATTT+GGG - chr3_3:74646146-74646165 None:intergenic 35.0%
TGAAGAGCCAATGAGTTATT+TGG - chr3_3:74646147-74646166 None:intergenic 35.0%
!!! GAGTGGTTTTGGTTTATGTT+AGG - chr3_3:74646226-74646245 None:intergenic 35.0%
! TGAACCAATTAGAGTGGTTT+TGG - chr3_3:74646237-74646256 None:intergenic 35.0%
TAGGAATGAACCAATTAGAG+TGG - chr3_3:74646243-74646262 None:intergenic 35.0%
GAAGAAATGTGAATAGGGAT+AGG - chr3_3:74646262-74646281 None:intergenic 35.0%
!!! GGGTTTTGTTTTTATGGGTT+TGG - chr3_3:74646300-74646319 None:intergenic 35.0%
!!! GTGTTTTGATTAAGACGTGA+AGG - chr3_3:74646346-74646365 None:intergenic 35.0%
TGGTGAAAAAAAAGAGGAAG+AGG - chr3_3:74646393-74646412 None:intergenic 35.0%
TTGTTATAGAATGCGTTCTG+AGG - chr3_3:74646520-74646539 None:intergenic 35.0%
AATGGAAAACCCTGCAATTT+GGG + chr3_3:74646614-74646633 Msa0472240:exon 35.0%
CATTAAAACCCCAAATTGCA+GGG - chr3_3:74646626-74646645 None:intergenic 35.0%
TCTTAGGAGTTATTGTTGGT+TGG + chr3_3:74646682-74646701 Msa0472240:CDS 35.0%
! GAGTTATTGTTGGTTGGTTA+TGG + chr3_3:74646688-74646707 Msa0472240:CDS 35.0%
!! ACCGAAATGGATTGTTTCAT+TGG + chr3_3:74646713-74646732 Msa0472240:CDS 35.0%
GCCAATGAAACAATCCATTT+CGG - chr3_3:74646717-74646736 None:intergenic 35.0%
CCCAATTTCACTAGTAGTTA+AGG - chr3_3:74647116-74647135 None:intergenic 35.0%
!! GAAAATTTGGGTTGAATGTG+TGG + chr3_3:74647197-74647216 Msa0472240:intron 35.0%
!! ACCATTAGAAGTATCTTCAC+CGG - chr3_3:74647325-74647344 None:intergenic 35.0%
!! AAGCTTGTTGAAGAGAAAGA+TGG + chr3_3:74647375-74647394 Msa0472240:CDS 35.0%
TTATCCATCATCTGTATCCA+AGG - chr3_3:74647408-74647427 None:intergenic 35.0%
CTTCTATCGTAACATACCTT+TGG - chr3_3:74647471-74647490 None:intergenic 35.0%
! CAAAGGTATGTTACGATAGA+AGG + chr3_3:74647469-74647488 Msa0472240:intron 35.0%
ATAGTACTGCTTCGATATTG+GGG - chr3_3:74647577-74647596 None:intergenic 35.0%
ATGATCAATTCCGACCTAAA+TGG + chr3_3:74647641-74647660 Msa0472240:CDS 35.0%
TGATCAATTCCGACCTAAAT+GGG + chr3_3:74647642-74647661 Msa0472240:CDS 35.0%
ACAAGCATATCATCCCATTT+AGG - chr3_3:74647658-74647677 None:intergenic 35.0%
TCTTATCCATTGCACTTTCA+TGG - chr3_3:74647719-74647738 None:intergenic 35.0%
! GAAAGTGCAATGGATAAGAA+AGG + chr3_3:74647720-74647739 Msa0472240:CDS 35.0%
TCTCTGTCTTTACAGAAGAA+GGG - chr3_3:74647860-74647879 None:intergenic 35.0%
TTCTCTGTCTTTACAGAAGA+AGG - chr3_3:74647861-74647880 None:intergenic 35.0%
!! TTTGCTTTTCTTCCTTTCAG+GGG + chr3_3:74648023-74648042 Msa0472240:intron 35.0%
! TTTTCTTGTCTTGGGATTGA+AGG - chr3_3:74648058-74648077 None:intergenic 35.0%
! GTCTAGGTTTTTCTTGTCTT+GGG - chr3_3:74648066-74648085 None:intergenic 35.0%
TAATACACATCTACACGTCT+AGG - chr3_3:74648082-74648101 None:intergenic 35.0%
AGCCTATATAACATGTCAAG+CGG - chr3_3:74648331-74648350 None:intergenic 35.0%
CTCTTCCATCATGAAGAAAT+GGG + chr3_3:74648443-74648462 Msa0472240:CDS 35.0%
GAATTCCCATTTCTTCATGA+TGG - chr3_3:74648451-74648470 None:intergenic 35.0%
ATGAAGAAATGGGAATTCCT+TGG + chr3_3:74648453-74648472 Msa0472240:CDS 35.0%
TGAAGAAATGGGAATTCCTT+GGG + chr3_3:74648454-74648473 Msa0472240:CDS 35.0%
TATCAAGAAGCAAAAGCTTC+TGG + chr3_3:74648548-74648567 Msa0472240:CDS 35.0%
TTGTAATGATCCATCATCAG+AGG - chr3_3:74648651-74648670 None:intergenic 35.0%
CTTGCTTGTAGTCTAGATAA+AGG + chr3_3:74648752-74648771 Msa0472240:CDS 35.0%
AACACCAAATATAACAGCCT+TGG - chr3_3:74648786-74648805 None:intergenic 35.0%
ATCAATCTCTTGAAGGGATT+TGG + chr3_3:74648861-74648880 Msa0472240:three_prime_UTR 35.0%
CATTCAAATGCGCATTACAT+TGG + chr3_3:74648908-74648927 Msa0472240:three_prime_UTR 35.0%
!! GGAAACTATAATGGATAACG+TGG - chr3_3:74649127-74649146 None:intergenic 35.0%
!!! AAATGTGGAGGCTCTTTTTT+TGG + chr3_3:74649161-74649180 Msa0472240:three_prime_UTR 35.0%
TGAATTCTTAGACCATGAGT+AGG + chr3_3:74649285-74649304 Msa0472240:three_prime_UTR 35.0%
AATGGGAGTGAAGGAAATTG+AGG - chr3_3:74645916-74645935 None:intergenic 40.0%
TGGTAAAACGAGTGATGTGA+AGG - chr3_3:74646095-74646114 None:intergenic 40.0%
AGGCCAAATATAAAGTGTGG+TGG - chr3_3:74646115-74646134 None:intergenic 40.0%
GAGTTATTTGGGGAATCTAG+AGG - chr3_3:74646135-74646154 None:intergenic 40.0%
! GTTAGGTGTTGTGTTTGTGT+TGG - chr3_3:74646209-74646228 None:intergenic 40.0%
AAGGAGCTGTGGAATATTTG+AGG - chr3_3:74646457-74646476 None:intergenic 40.0%
!! AATGCGTTCTGAGGAAACTA+AGG - chr3_3:74646511-74646530 None:intergenic 40.0%
CAATGGAAAACCCTGCAATT+TGG + chr3_3:74646613-74646632 Msa0472240:exon 40.0%
ATGGAAAACCCTGCAATTTG+GGG + chr3_3:74646615-74646634 Msa0472240:CDS 40.0%
GCATTAAAACCCCAAATTGC+AGG - chr3_3:74646627-74646646 None:intergenic 40.0%
GTTGGTTATGGAAACCGAAA+TGG + chr3_3:74646700-74646719 Msa0472240:CDS 40.0%
ATGCACAAAGAATCAGGGTT+TGG - chr3_3:74646849-74646868 None:intergenic 40.0%
GTGGAACTGTCAAATTTGGT+GGG - chr3_3:74646912-74646931 None:intergenic 40.0%
TGTGGAACTGTCAAATTTGG+TGG - chr3_3:74646913-74646932 None:intergenic 40.0%
CCTTGTGGAACTGTCAAATT+TGG - chr3_3:74646916-74646935 None:intergenic 40.0%
CCAAATTTGACAGTTCCACA+AGG + chr3_3:74646913-74646932 Msa0472240:CDS 40.0%
GCACCATCATAGACCAATTA+TGG - chr3_3:74647075-74647094 None:intergenic 40.0%
CTATGCAGTTCTCAGAAATC+CGG + chr3_3:74647303-74647322 Msa0472240:intron 40.0%
TCCGGTGAAGATACTTCTAA+TGG + chr3_3:74647321-74647340 Msa0472240:CDS 40.0%
CTTGTTGAAGAGAAAGATGG+AGG + chr3_3:74647378-74647397 Msa0472240:CDS 40.0%
TCTTCCTTGGATACAGATGA+TGG + chr3_3:74647401-74647420 Msa0472240:CDS 40.0%
GCATATCATCCCATTTAGGT+CGG - chr3_3:74647654-74647673 None:intergenic 40.0%
CTCTGTCTTTACAGAAGAAG+GGG - chr3_3:74647859-74647878 None:intergenic 40.0%
ACATTATCGGGCGAAGAATA+TGG + chr3_3:74647882-74647901 Msa0472240:CDS 40.0%
CATTATCGGGCGAAGAATAT+GGG + chr3_3:74647883-74647902 Msa0472240:CDS 40.0%
TACCTTTGTGACGCAATAGT+AGG - chr3_3:74647921-74647940 None:intergenic 40.0%
!! TTGCTTTTCTTCCTTTCAGG+GGG + chr3_3:74648024-74648043 Msa0472240:intron 40.0%
! CGTCTAGGTTTTTCTTGTCT+TGG - chr3_3:74648067-74648086 None:intergenic 40.0%
CACCGCTTGACATGTTATAT+AGG + chr3_3:74648326-74648345 Msa0472240:intron 40.0%
GCTCTTCCATCATGAAGAAA+TGG + chr3_3:74648442-74648461 Msa0472240:CDS 40.0%
CTTGGGAAATTGCAAAGCTT+GGG + chr3_3:74648471-74648490 Msa0472240:CDS 40.0%
TTGGGAAATTGCAAAGCTTG+GGG + chr3_3:74648472-74648491 Msa0472240:CDS 40.0%
ATGGTACAAAAGATTGAGCC+CGG + chr3_3:74648515-74648534 Msa0472240:CDS 40.0%
TTCTTGATAAGCGCGTAAAC+CGG - chr3_3:74648537-74648556 None:intergenic 40.0%
GTCAGAAGTAATCGCACTTT+CGG - chr3_3:74648675-74648694 None:intergenic 40.0%
TACTTCTGACGACAAACCAA+AGG + chr3_3:74648685-74648704 Msa0472240:CDS 40.0%
ACTTCTGACGACAAACCAAA+GGG + chr3_3:74648686-74648705 Msa0472240:CDS 40.0%
AATGACTAGCATCTTCGGTA+CGG - chr3_3:74648717-74648736 None:intergenic 40.0%
! AGATAAAGGATTGGTGACCA+AGG + chr3_3:74648766-74648785 Msa0472240:CDS 40.0%
GTGACCAAGGCTGTTATATT+TGG + chr3_3:74648779-74648798 Msa0472240:CDS 40.0%
AGGTGGAATCAATCTCTTGA+AGG + chr3_3:74648854-74648873 Msa0472240:three_prime_UTR 40.0%
GGTGGAATCAATCTCTTGAA+GGG + chr3_3:74648855-74648874 Msa0472240:three_prime_UTR 40.0%
! CGCATTACATTGGTTGATGT+TGG + chr3_3:74648918-74648937 Msa0472240:three_prime_UTR 40.0%
! GGTTGATGTTGGATCAAGAT+CGG + chr3_3:74648929-74648948 Msa0472240:three_prime_UTR 40.0%
GTTGATGTTGGATCAAGATC+GGG + chr3_3:74648930-74648949 Msa0472240:three_prime_UTR 40.0%
ACTGTTCGATCAAGATCCAA+TGG - chr3_3:74649021-74649040 None:intergenic 40.0%
CCAAAACAATGGCTTCAAGA+GGG - chr3_3:74649099-74649118 None:intergenic 40.0%
TCCAAAACAATGGCTTCAAG+AGG - chr3_3:74649100-74649119 None:intergenic 40.0%
ACGTGGATCATCCAAAACAA+TGG - chr3_3:74649110-74649129 None:intergenic 40.0%
CTTTCTCATTCCCCTAGATT+TGG - chr3_3:74649210-74649229 None:intergenic 40.0%
!! AAAGTCTCGGCTTGTTGATT+TGG + chr3_3:74649226-74649245 Msa0472240:three_prime_UTR 40.0%
!! AAGTCTCGGCTTGTTGATTT+GGG + chr3_3:74649227-74649246 Msa0472240:three_prime_UTR 40.0%
! AAGGGGTATGTGGTTGAAGA+AGG - chr3_3:74646476-74646495 None:intergenic 45.0%
! TTTGGTGGGTGAAGAAGAAG+AGG - chr3_3:74646898-74646917 None:intergenic 45.0%
AGAAAGATGGAGGTCTTCCT+TGG + chr3_3:74647388-74647407 Msa0472240:CDS 45.0%
TACTCCGACTATGAGTTACC+AGG + chr3_3:74647431-74647450 Msa0472240:CDS 45.0%
CATGCCTGGTAACTCATAGT+CGG - chr3_3:74647438-74647457 None:intergenic 45.0%
TACTGCTTCGATATTGGGGA+GGG - chr3_3:74647573-74647592 None:intergenic 45.0%
TGAAGATGCAACTCCTGAGA+TGG + chr3_3:74647600-74647619 Msa0472240:CDS 45.0%
AACAAATCCCTCACCATCTC+AGG - chr3_3:74647616-74647635 None:intergenic 45.0%
! AGATGGTGAGGGATTTGTTC+TGG + chr3_3:74647617-74647636 Msa0472240:CDS 45.0%
! GATGGTGAGGGATTTGTTCT+GGG + chr3_3:74647618-74647637 Msa0472240:CDS 45.0%
!! TTAGAAGAGTGTCCTACCAC+TGG + chr3_3:74647691-74647710 Msa0472240:CDS 45.0%
ACTTTCATGGTTCCAGTGGT+AGG - chr3_3:74647706-74647725 None:intergenic 45.0%
TTGCACTTTCATGGTTCCAG+TGG - chr3_3:74647710-74647729 None:intergenic 45.0%
! CTGGAACCATGAAAGTGCAA+TGG + chr3_3:74647710-74647729 Msa0472240:CDS 45.0%
GTCCTACTATTGCGTCACAA+AGG + chr3_3:74647916-74647935 Msa0472240:CDS 45.0%
CCAAGCTTTGCAATTTCCCA+AGG - chr3_3:74648473-74648492 None:intergenic 45.0%
CCTTGGGAAATTGCAAAGCT+TGG + chr3_3:74648470-74648489 Msa0472240:CDS 45.0%
TCTTGATAAGCGCGTAAACC+GGG - chr3_3:74648536-74648555 None:intergenic 45.0%
GTACCGAAGATGCTAGTCAT+TGG + chr3_3:74648716-74648735 Msa0472240:CDS 45.0%
CCACCAATGACTAGCATCTT+CGG - chr3_3:74648722-74648741 None:intergenic 45.0%
! CCCTCTTGAAGCCATTGTTT+TGG + chr3_3:74649096-74649115 Msa0472240:three_prime_UTR 45.0%
CTAGGGGAATGAGAAAGTCT+CGG + chr3_3:74649213-74649232 Msa0472240:three_prime_UTR 45.0%
!! GCTTGTTGATTTGGGAGAGA+GGG + chr3_3:74649235-74649254 Msa0472240:three_prime_UTR 45.0%
!!! CTGTGGTTTTGACCTACTCA+TGG - chr3_3:74649300-74649319 None:intergenic 45.0%
!! TAACTTATTTATTTAATTAA+TGG - chr3_3:74646946-74646965 None:intergenic 5.0%
TGTGGTTGAAGAAGGAGCTG+TGG - chr3_3:74646468-74646487 None:intergenic 50.0%
CGACTATGAGTTACCAGGCA+TGG + chr3_3:74647436-74647455 Msa0472240:CDS 50.0%
GTACTGCTTCGATATTGGGG+AGG - chr3_3:74647574-74647593 None:intergenic 50.0%
ATGCAACTCCTGAGATGGTG+AGG + chr3_3:74647605-74647624 Msa0472240:CDS 50.0%
TGCAACTCCTGAGATGGTGA+GGG + chr3_3:74647606-74647625 Msa0472240:CDS 50.0%
GGGCGAAGAATATGGGAATG+CGG + chr3_3:74647890-74647909 Msa0472240:CDS 50.0%
GGCGAAGAATATGGGAATGC+GGG + chr3_3:74647891-74647910 Msa0472240:CDS 50.0%
GAAGAATATGGGAATGCGGG+AGG + chr3_3:74647894-74647913 Msa0472240:CDS 50.0%
AGGACAATCTACCCCCTGAA+AGG - chr3_3:74648038-74648057 None:intergenic 50.0%
! TCTAGTTGGTGCATTCGAGC+AGG + chr3_3:74648103-74648122 Msa0472240:CDS 50.0%
ATGAAAGCGGAACGAGAGAG+TGG - chr3_3:74648578-74648597 None:intergenic 50.0%
ACTCTCTCGTTCCGCTTTCA+TGG + chr3_3:74648577-74648596 Msa0472240:CDS 50.0%
ATTGACACCGGCCATGAAAG+CGG - chr3_3:74648591-74648610 None:intergenic 50.0%
CCTGGGTACTTGCAATCCAT+CGG + chr3_3:74648623-74648642 Msa0472240:CDS 50.0%
TCCATCGGATCCTCTGATGA+TGG + chr3_3:74648638-74648657 Msa0472240:CDS 50.0%
TCCATCATCAGAGGATCCGA+TGG - chr3_3:74648642-74648661 None:intergenic 50.0%
CCGAAGATGCTAGTCATTGG+TGG + chr3_3:74648719-74648738 Msa0472240:CDS 50.0%
GATGTTGGATCAAGATCGGG+TGG + chr3_3:74648933-74648952 Msa0472240:three_prime_UTR 50.0%
!! GGCTTGTTGATTTGGGAGAG+AGG + chr3_3:74649234-74649253 Msa0472240:three_prime_UTR 50.0%
! TTGGTTCTCTACGCCATGCC+TGG - chr3_3:74647452-74647471 None:intergenic 55.0%
GGCATGGCGTAGAGAACCAA+AGG + chr3_3:74647452-74647471 Msa0472240:CDS 55.0%
GCAAAGCTTGGGGTGCGAAA+AGG + chr3_3:74648482-74648501 Msa0472240:CDS 55.0%
! TTGGGGTGCGAAAAGGCATG+TGG + chr3_3:74648489-74648508 Msa0472240:CDS 55.0%
! TGGGGTGCGAAAAGGCATGT+GGG + chr3_3:74648490-74648509 Msa0472240:CDS 55.0%
! GCGAAAAGGCATGTGGGGAA+TGG + chr3_3:74648496-74648515 Msa0472240:CDS 55.0%
TCTCGTTCCGCTTTCATGGC+CGG + chr3_3:74648581-74648600 Msa0472240:CDS 55.0%
!! CCGATGGATTGCAAGTACCC+AGG - chr3_3:74648626-74648645 None:intergenic 55.0%
TTCGGTACGGTCATGCCCTT+TGG - chr3_3:74648704-74648723 None:intergenic 55.0%
! GGGGTGCGAAAAGGCATGTG+GGG + chr3_3:74648491-74648510 Msa0472240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74645895 74649483 74645895 ID=Msa0472240;Name=Msa0472240
chr3_3 mRNA 74645895 74649483 74645895 ID=Msa0472240-mRNA-1;Parent=Msa0472240;Name=Msa0472240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=720|1|1|1|1|1|6|639|424
chr3_3 exon 74645895 74646934 74645895 ID=Msa0472240-mRNA-1:exon:19117;Parent=Msa0472240-mRNA-1
chr3_3 exon 74647311 74647473 74647311 ID=Msa0472240-mRNA-1:exon:19118;Parent=Msa0472240-mRNA-1
chr3_3 exon 74647565 74647741 74647565 ID=Msa0472240-mRNA-1:exon:19119;Parent=Msa0472240-mRNA-1
chr3_3 exon 74647854 74647937 74647854 ID=Msa0472240-mRNA-1:exon:19120;Parent=Msa0472240-mRNA-1
chr3_3 exon 74648043 74648124 74648043 ID=Msa0472240-mRNA-1:exon:19121;Parent=Msa0472240-mRNA-1
chr3_3 exon 74648396 74649483 74648396 ID=Msa0472240-mRNA-1:exon:19122;Parent=Msa0472240-mRNA-1
chr3_3 five_prime_UTR 74645895 74646614 74645895 ID=Msa0472240-mRNA-1:five_prime_utr;Parent=Msa0472240-mRNA-1
chr3_3 CDS 74646615 74646934 74646615 ID=Msa0472240-mRNA-1:cds;Parent=Msa0472240-mRNA-1
chr3_3 CDS 74647311 74647473 74647311 ID=Msa0472240-mRNA-1:cds;Parent=Msa0472240-mRNA-1
chr3_3 CDS 74647565 74647741 74647565 ID=Msa0472240-mRNA-1:cds;Parent=Msa0472240-mRNA-1
chr3_3 CDS 74647854 74647937 74647854 ID=Msa0472240-mRNA-1:cds;Parent=Msa0472240-mRNA-1
chr3_3 CDS 74648043 74648124 74648043 ID=Msa0472240-mRNA-1:cds;Parent=Msa0472240-mRNA-1
chr3_3 CDS 74648396 74648844 74648396 ID=Msa0472240-mRNA-1:cds;Parent=Msa0472240-mRNA-1
chr3_3 three_prime_UTR 74648845 74649483 74648845 ID=Msa0472240-mRNA-1:three_prime_utr;Parent=Msa0472240-mRNA-1
Gene Sequence

>Msa0472240

ATGGAAAACCCTGCAATTTGGGGTTTTAATGCAACGATGTTTATGAGTCCTATGTTGTTAGTGTTTTTCTTAGGAGTTATTGTTGGTTGGTTATGGAAACCGAAATGGATTGTTTCATTGGCTAAGTCTTTTGATTTAGCTTCACCAATTTCAGATTCTCCTATATTTTCGCCATTGAAATTCTATTCTTCTTTGTCTCCTTGTGTTAATTCTTCTATTACAATGCAAAATCCAAACCCTGATTCTTTGTGCATCAATAAAGAGATCAATAAAAAGGGTTCCTCTTCTTCTTCACCCACCAAATTTGACAGTTCCACAAGTTCTCAGAAATCCGGTGAAGATACTTCTAATGGTGTTACAATCGATGATTTACATCATTTATACAAGCTTGTTGAAGAGAAAGATGGAGGTCTTCCTTGGATACAGATGATGGATAAATCTACTCCGACTATGAGTTACCAGGCATGGCGTAGAGAACCAAAGGACGGCCCTCCCCAATATCGAAGCAGTACTATTTTTGAAGATGCAACTCCTGAGATGGTGAGGGATTTGTTCTGGGATGATCAATTCCGACCTAAATGGGATGATATGCTTGTGAACTCAACAACATTAGAAGAGTGTCCTACCACTGGAACCATGAAAGTGCAATGGATAAGAAAGTTCCCCTTCTTCTGTAAAGACAGAGAATACATTATCGGGCGAAGAATATGGGAATGCGGGAGGTCCTACTATTGCGTCACAAAGGGGGTAGATTGTCCTTCAATCCCAAGACAAGAAAAACCTAGACGTGTAGATGTGTATTACTCTAGTTGGTGCATTCGAGCAGTTGAATCAAAGAGAGATAATGGTCAACTGACTGCATGTGAAGTTTTGCTCTTCCATCATGAAGAAATGGGAATTCCTTGGGAAATTGCAAAGCTTGGGGTGCGAAAAGGCATGTGGGGAATGGTACAAAAGATTGAGCCCGGTTTACGCGCTTATCAAGAAGCAAAAGCTTCTGGAGCTCCACTCTCTCGTTCCGCTTTCATGGCCGGTGTCAATACAAAAATAAGTCCTGGGTACTTGCAATCCATCGGATCCTCTGATGATGGATCATTACAAACCGAAAGTGCGATTACTTCTGACGACAAACCAAAGGGCATGACCGTACCGAAGATGCTAGTCATTGGTGGTGCTGTTGCTCTTGCTTGTAGTCTAGATAAAGGATTGGTGACCAAGGCTGTTATATTTGGTGTTGCTAAAAGATTTGGATTTGCTAATTTGGGTAAAAGATAG
Protein sequence

>Msa0472240

MENPAIWGFNATMFMSPMLLVFFLGVIVGWLWKPKWIVSLAKSFDLASPISDSPIFSPLKFYSSLSPCVNSSITMQNPNPDSLCINKEINKKGSSSSSPTKFDSSTSSQKSGEDTSNGVTIDDLHHLYKLVEEKDGGLPWIQMMDKSTPTMSYQAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDDQFRPKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWECGRSYYCVTKGVDCPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEVLLFHHEEMGIPWEIAKLGVRKGMWGMVQKIEPGLRAYQEAKASGAPLSRSAFMAGVNTKISPGYLQSIGSSDDGSLQTESAITSDDKPKGMTVPKMLVIGGAVALACSLDKGLVTKAVIFGVAKRFGFANLGKR*