AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472220 MtrunA17_Chr3g0127861 97.406 424 11 0 1 424 1 424 0.0 860
Msa0472220 MtrunA17_Chr1g0189151 53.976 415 156 5 10 424 15 394 9.20e-162 461
Msa0472220 MtrunA17_Chr5g0395041 43.659 410 217 6 17 417 30 434 3.35e-114 341
Msa0472220 MtrunA17_Chr4g0000091 31.208 298 175 9 115 396 68 351 5.54e-37 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472220 AT1G64720.1 58.612 418 123 8 8 424 16 384 1.80e-170 483
Msa0472220 AT5G54170.1 53.477 417 169 8 20 416 16 427 3.47e-146 424
Msa0472220 AT4G14500.1 46.798 406 207 3 17 417 30 431 8.77e-127 374
Msa0472220 AT3G23080.1 45.320 406 203 5 17 417 26 417 8.14e-117 348
Msa0472220 AT3G23080.2 45.750 400 198 5 23 417 1 386 2.83e-116 345
Msa0472220 AT3G23080.3 45.750 400 198 5 23 417 1 386 2.83e-116 345
Msa0472220 AT4G14500.2 43.750 240 128 3 17 249 30 269 8.50e-60 197
Msa0472220 AT3G13062.1 32.993 294 180 8 119 402 84 370 9.62e-41 149
Msa0472220 AT3G13062.2 32.993 294 180 8 119 402 84 370 1.17e-40 150
Msa0472220 AT1G55960.1 32.558 301 171 9 116 396 80 368 2.16e-38 143
Msa0472220 AT3G13062.3 32.119 302 180 9 119 402 84 378 5.00e-38 142
Msa0472220 AT1G55960.2 29.866 298 152 10 119 396 83 343 5.71e-27 111

Find 188 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGGATTTGCTAATT+TGG 0.096001 3_3:+74612059 Msa0472220:CDS
AATACTAATAATTTGGAATT+TGG 0.101804 3_3:-74609249 None:intergenic
TGAAGAGCCAATGAGTTATT+TGG 0.155566 3_3:-74609384 None:intergenic
TTACCACCACACTTTATATT+TGG 0.170666 3_3:+74609349 Msa0472220:five_prime_UTR
CCTTGTGGAACTATCAAATT+TGG 0.183642 3_3:-74610153 None:intergenic
AGGTTTGAATACTAATAATT+TGG 0.192169 3_3:-74609256 None:intergenic
CAATGGAAAACCCTGCAATT+TGG 0.229635 3_3:+74609853 Msa0472220:exon
ATCAATCTCTTGAAGGGATT+TGG 0.233935 3_3:+74612109 Msa0472220:three_prime_UTR
AAATAGTACTGCTTCGATAT+TGG 0.237005 3_3:-74610825 None:intergenic
CAATAAAGAGATCAATAAAA+AGG 0.238323 3_3:+74610109 Msa0472220:CDS
ACATTATCGGGCGAAGAATA+TGG 0.249260 3_3:+74611131 Msa0472220:CDS
TTTGGTGTTGCTAAAAGATT+TGG 0.250029 3_3:+74612045 Msa0472220:CDS
AATGGAAAACCCTGCAATTT+GGG 0.252814 3_3:+74609854 Msa0472220:exon
AAAGTCTCGGCTTGTTGATT+TGG 0.257188 3_3:+74612474 Msa0472220:three_prime_UTR
AGATGGTGAGGGATTTGTTC+TGG 0.264325 3_3:+74610866 Msa0472220:CDS
TAAACCAAAACCACTCTAAT+TGG 0.265319 3_3:+74609470 Msa0472220:five_prime_UTR
AGTTTATTTCACCCTCTTAA+AGG 0.266705 3_3:+74609808 Msa0472220:five_prime_UTR
CCCTCTTGAAGCCATTGTTT+TGG 0.269675 3_3:+74612344 Msa0472220:three_prime_UTR
TCGTATCCATTGCACTTTCA+TGG 0.273559 3_3:-74610965 None:intergenic
ATGATCAATTCCGACCTAAA+TGG 0.274607 3_3:+74610890 Msa0472220:CDS
TGAACCAATTAGAGTGGTTT+TGG 0.278685 3_3:-74609474 None:intergenic
AGATTTGGATTTGCTAATTT+GGG 0.278788 3_3:+74612060 Msa0472220:CDS
ACTCTCTCGTTCCGCTTTCA+TGG 0.280943 3_3:+74611825 Msa0472220:CDS
GAGTTATTGTTGGTTGGTTA+TGG 0.284197 3_3:+74609928 Msa0472220:CDS
ATTTGAGGAGGAGAATAATT+AGG 0.289092 3_3:-74609679 None:intergenic
TGGTCCTAGGGAAAATTAAA+TGG 0.295109 3_3:-74609177 None:intergenic
AATAGTACTGCTTCGATATT+GGG 0.295359 3_3:-74610824 None:intergenic
GAAGAGCCAATGAGTTATTT+GGG 0.295858 3_3:-74609383 None:intergenic
GTGACCAAGGCTGTTATATT+TGG 0.297239 3_3:+74612027 Msa0472220:CDS
CTTTCTCATTCCCCTAGATT+TGG 0.311325 3_3:-74612455 None:intergenic
ACCGAAATGGATTGTTTCAT+TGG 0.320605 3_3:+74609953 Msa0472220:CDS
TTATTGATGCACAAAGAATC+AGG 0.325112 3_3:-74610092 None:intergenic
TATCAAGAAGCAAAAGCTTC+TGG 0.334002 3_3:+74611796 Msa0472220:CDS
AATATAGGAGAATCTGAAAT+TGG 0.334138 3_3:-74609999 None:intergenic
TAGGGAAAATTAAATGGAAA+TGG 0.334646 3_3:-74609171 None:intergenic
GCTCTTCCATCATGAAGAAA+TGG 0.335228 3_3:+74611690 Msa0472220:CDS
ACAAGCATATCATCCCATTT+AGG 0.342967 3_3:-74610904 None:intergenic
GCCAATGAAACAATCCATTT+CGG 0.348500 3_3:-74609954 None:intergenic
GCATTAAAACCCCAAATTGC+AGG 0.348790 3_3:-74609864 None:intergenic
AAGTCTCGGCTTGTTGATTT+GGG 0.349338 3_3:+74612475 Msa0472220:three_prime_UTR
CTTGGGAAATTGCAAAGCTT+GGG 0.351239 3_3:+74611719 Msa0472220:CDS
CTTGCTTGTAGTCTAGATAA+AGG 0.357837 3_3:+74612000 Msa0472220:CDS
TTCTTGATAAGCGCGTAAAC+CGG 0.360902 3_3:-74611782 None:intergenic
TTCTCTGTCTTTACAGAAGA+AGG 0.369154 3_3:-74611107 None:intergenic
ACGGCGTTTGATTGTTTGCT+TGG 0.379599 3_3:-74609197 None:intergenic
CCTTGGGAAATTGCAAAGCT+TGG 0.380072 3_3:+74611718 Msa0472220:CDS
TTGATTGTTTGCTTGGTCCT+AGG 0.388399 3_3:-74609190 None:intergenic
ATGCACAAAGAATCAGGGTT+TGG 0.389553 3_3:-74610086 None:intergenic
TTCGGTACGGTCATGCCCTT+TGG 0.391532 3_3:-74611949 None:intergenic
GTCAGAAGTAATCGCACTTT+CGG 0.393685 3_3:-74611920 None:intergenic
GTTTATTTCACCCTCTTAAA+GGG 0.396971 3_3:+74609809 Msa0472220:five_prime_UTR
GAAGAAATGTGAATAGGAAT+AGG 0.398071 3_3:-74609499 None:intergenic
TTTGTGTTGGAGAATTTGTT+AGG 0.407127 3_3:-74609433 None:intergenic
GTTGGTTATGGAAACCGAAA+TGG 0.409722 3_3:+74609940 Msa0472220:CDS
GTTGAATCAAAGAGAGATAA+TGG 0.410181 3_3:+74611643 Msa0472220:intron
TATGAAGAAGAAATGTGAAT+AGG 0.417715 3_3:-74609505 None:intergenic
AATTTCAATGGCGAAAATAT+AGG 0.421810 3_3:-74610014 None:intergenic
AAGTTTCAAAACCCTTTAAG+AGG 0.424066 3_3:-74609820 None:intergenic
CGCATTACATTGGTTGATGT+TGG 0.425042 3_3:+74612166 Msa0472220:three_prime_UTR
CTCTTCCATCATGAAGAAAT+GGG 0.425947 3_3:+74611691 Msa0472220:CDS
TCTCGTTCCGCTTTCATGGC+CGG 0.427496 3_3:+74611829 Msa0472220:CDS
ATGAAGAAATGGGAATTCCT+TGG 0.434331 3_3:+74611701 Msa0472220:CDS
AGAAAGAAGATAAGAAGAAG+AGG 0.435078 3_3:-74609558 None:intergenic
AACAAATCCCTCACCATCTC+AGG 0.435785 3_3:-74610862 None:intergenic
GAAGGAAATTGAGGTATTAG+TGG 0.435878 3_3:-74609144 None:intergenic
CATTATCGGGCGAAGAATAT+GGG 0.439592 3_3:+74611132 Msa0472220:CDS
AAAGACAGAGAATACATTAT+CGG 0.440471 3_3:+74611118 Msa0472220:CDS
TGATCAATTCCGACCTAAAT+GGG 0.441777 3_3:+74610891 Msa0472220:CDS
TCTTAGGAGTTATTGTTGGT+TGG 0.448664 3_3:+74609922 Msa0472220:CDS
AAGGAGCTGTGGAATATTTG+AGG 0.450163 3_3:-74609694 None:intergenic
TCCGGTGAAGATACTTCTAA+TGG 0.456041 3_3:+74610570 Msa0472220:CDS
AGAAAGATGGAGGTCTTCCT+TGG 0.462865 3_3:+74610637 Msa0472220:CDS
AAACATTCACATGGTAAAGT+TGG 0.463882 3_3:+74612649 Msa0472220:three_prime_UTR
GATGGTGAGGGATTTGTTCT+GGG 0.463908 3_3:+74610867 Msa0472220:CDS
TGAAGAAATGGGAATTCCTT+GGG 0.464197 3_3:+74611702 Msa0472220:CDS
TGATTGTTTGCTTGGTCCTA+GGG 0.465087 3_3:-74609189 None:intergenic
AGGGAAAATTAAATGGAAAT+GGG 0.466993 3_3:-74609170 None:intergenic
GTTAGGTGTTGTGTTTGTGT+TGG 0.472614 3_3:-74609446 None:intergenic
TTGGTTCTCTACGCCATGCC+TGG 0.479368 3_3:-74610698 None:intergenic
CCACCAATGACTAGCATCTT+CGG 0.484556 3_3:-74611967 None:intergenic
GCAAAGCTTGGGGTGCGAAA+AGG 0.484622 3_3:+74611730 Msa0472220:CDS
GTTGATGTTGGATCAAGATC+GGG 0.486228 3_3:+74612178 Msa0472220:three_prime_UTR
CTATGCAGTTCTCAGAAATC+CGG 0.487042 3_3:+74610552 Msa0472220:intron
GAATTCCCATTTCTTCATGA+TGG 0.489686 3_3:-74611696 None:intergenic
AGATTCCCCAAATAACTCAT+TGG 0.490673 3_3:+74609377 Msa0472220:five_prime_UTR
CATTCAAATGCGCATTACAT+TGG 0.491198 3_3:+74612156 Msa0472220:three_prime_UTR
GGTTGATGTTGGATCAAGAT+CGG 0.498351 3_3:+74612177 Msa0472220:three_prime_UTR
GGCGAAGAATATGGGAATGC+GGG 0.499090 3_3:+74611140 Msa0472220:CDS
AAAGAAGAATAGAATTTCAA+TGG 0.502415 3_3:-74610026 None:intergenic
AGGTGGAATCAATCTCTTGA+AGG 0.504620 3_3:+74612102 Msa0472220:three_prime_UTR
AAGGGGTATGTGGTTGAAGA+AGG 0.505565 3_3:-74609713 None:intergenic
GAGTTTGAAATTTAGACCAT+TGG 0.506045 3_3:+74612250 Msa0472220:three_prime_UTR
AAGACAGAGAATACATTATC+GGG 0.507509 3_3:+74611119 Msa0472220:CDS
TCTAGTTGGTGCATTCGAGC+AGG 0.509639 3_3:+74611352 Msa0472220:CDS
AAGAGGGTGAAATAAACTAA+AGG 0.510097 3_3:-74609803 None:intergenic
AGAGGGTGAAATAAACTAAA+GGG 0.510899 3_3:-74609802 None:intergenic
AATGCGTTCTGAGGAAACTA+AGG 0.512423 3_3:-74609748 None:intergenic
TCCAAAACAATGGCTTCAAG+AGG 0.515874 3_3:-74612345 None:intergenic
TCTCTGTCTTTACAGAAGAA+GGG 0.516792 3_3:-74611106 None:intergenic
GCGAAAAGGCATGTGGGGAA+TGG 0.521022 3_3:+74611744 Msa0472220:CDS
TCTTCCTTGGATACAGATGA+TGG 0.524577 3_3:+74610650 Msa0472220:CDS
TCCATCGGATCCTCTGATGA+TGG 0.527053 3_3:+74611886 Msa0472220:CDS
CCAAGCTTTGCAATTTCCCA+AGG 0.529721 3_3:-74611718 None:intergenic
TCTTGATAAGCGCGTAAACC+GGG 0.530261 3_3:-74611781 None:intergenic
CTCTGTCTTTACAGAAGAAG+GGG 0.532991 3_3:-74611105 None:intergenic
GTAAAAGATAGTAGAACTAA+AGG 0.533449 3_3:+74612082 Msa0472220:exon
CATTAAAACCCCAAATTGCA+GGG 0.535660 3_3:-74609863 None:intergenic
TGATGTTGGAATTGAAAATG+AGG 0.539227 3_3:-74609276 None:intergenic
TTGGGGTGCGAAAAGGCATG+TGG 0.540671 3_3:+74611737 Msa0472220:CDS
GAAAGAAGATAAGAAGAAGA+GGG 0.540918 3_3:-74609557 None:intergenic
TACCTTTGTGACGCAATAGT+AGG 0.544173 3_3:-74611167 None:intergenic
ACCATTAGAAGTATCTTCAC+CGG 0.545080 3_3:-74610571 None:intergenic
TTAAATGGAAATGGGAGTGA+AGG 0.546440 3_3:-74609162 None:intergenic
TGGGGTGCGAAAAGGCATGT+GGG 0.547657 3_3:+74611738 Msa0472220:CDS
AAGCTTGTTGAAGAGAAAGA+TGG 0.548875 3_3:+74610624 Msa0472220:CDS
GGTGGAATCAATCTCTTGAA+GGG 0.550268 3_3:+74612103 Msa0472220:three_prime_UTR
AAAGATAGTAGAACTAAAGG+TGG 0.551418 3_3:+74612085 Msa0472220:exon
ATGGTACAAAAGATTGAGCC+CGG 0.553382 3_3:+74611763 Msa0472220:CDS
AACACCAAATATAACAGCCT+TGG 0.555762 3_3:-74612031 None:intergenic
AATGGGAGTGAAGGAAATTG+AGG 0.558197 3_3:-74609153 None:intergenic
GTACCGAAGATGCTAGTCAT+TGG 0.562943 3_3:+74611964 Msa0472220:CDS
TTGGGAAATTGCAAAGCTTG+GGG 0.564589 3_3:+74611720 Msa0472220:CDS
TTGCACTTTCATGGTTCCAG+TGG 0.567434 3_3:-74610956 None:intergenic
TATTGATGCACAAAGAATCA+GGG 0.567482 3_3:-74610091 None:intergenic
ACTTTCATGGTTCCAGTGGT+AGG 0.569928 3_3:-74610952 None:intergenic
TTAGAAGAGTGTCCTACCAC+TGG 0.570104 3_3:+74610940 Msa0472220:CDS
AGTTTCAAAACCCTTTAAGA+GGG 0.570957 3_3:-74609819 None:intergenic
CACAGAGTTTATAAATTCTG+TGG 0.571669 3_3:-74612562 None:intergenic
TTTATTACTTCAAAATGTGG+AGG 0.572509 3_3:+74612397 Msa0472220:three_prime_UTR
TAGATGTGTATTACTCTAGT+TGG 0.573803 3_3:+74611338 Msa0472220:CDS
GCTTGTTGATTTGGGAGAGA+GGG 0.574652 3_3:+74612483 Msa0472220:three_prime_UTR
ATGCAACTCCTGAGATGGTG+AGG 0.574823 3_3:+74610854 Msa0472220:CDS
CCGATGGATTGCAAGTACTC+AGG 0.575720 3_3:-74611871 None:intergenic
TTATCCATCATCTGTATCCA+AGG 0.580476 3_3:-74610654 None:intergenic
TAATACACATCTACACGTCT+AGG 0.582676 3_3:-74611328 None:intergenic
GGCTTGTTGATTTGGGAGAG+AGG 0.583955 3_3:+74612482 Msa0472220:three_prime_UTR
CTAGGGGAATGAGAAAGTCT+CGG 0.584830 3_3:+74612461 Msa0472220:three_prime_UTR
CCGAAGATGCTAGTCATTGG+TGG 0.584906 3_3:+74611967 Msa0472220:CDS
CCTGAGTACTTGCAATCCAT+CGG 0.588767 3_3:+74611871 Msa0472220:CDS
TACTTCTGACGACAAACCAA+AGG 0.589022 3_3:+74611933 Msa0472220:CDS
ATGAAAGCGGAACGAGAGAG+TGG 0.589867 3_3:-74611823 None:intergenic
GAGTTATTTGGGGAATCTAG+AGG 0.590288 3_3:-74609372 None:intergenic
AAGAGCCAATGAGTTATTTG+GGG 0.590619 3_3:-74609382 None:intergenic
TTTGGTGGGTGAAGAAGAAG+AGG 0.592927 3_3:-74610135 None:intergenic
CGACTATGAGTTACCAGGCA+TGG 0.594580 3_3:+74610685 Msa0472220:CDS
TGAATTCTTAGACCATGAGT+AGG 0.598691 3_3:+74612533 Msa0472220:three_prime_UTR
TCGTTATAGAATGCGTTCTG+AGG 0.598981 3_3:-74609757 None:intergenic
TGAAGATGCAACTCCTGAGA+TGG 0.599312 3_3:+74610849 Msa0472220:CDS
ATGGAAAACCCTGCAATTTG+GGG 0.599898 3_3:+74609855 Msa0472220:CDS
ACTTCTGACGACAAACCAAA+GGG 0.601183 3_3:+74611934 Msa0472220:CDS
TACTGCTTCGATATTGGGGA+GGG 0.606720 3_3:-74610819 None:intergenic
ACTGTTCGATCAAGATCCAA+TGG 0.611534 3_3:-74612266 None:intergenic
TCCATCATCAGAGGATCCGA+TGG 0.612428 3_3:-74611887 None:intergenic
TGTGGAACTATCAAATTTGG+TGG 0.612711 3_3:-74610150 None:intergenic
TTGTAGTCTAGATAAAGGAT+TGG 0.612824 3_3:+74612005 Msa0472220:CDS
TAGGAATGAACCAATTAGAG+TGG 0.613983 3_3:-74609480 None:intergenic
AATGACTAGCATCTTCGGTA+CGG 0.620562 3_3:-74611962 None:intergenic
CTGGAACCATGAAAGTGCAA+TGG 0.622256 3_3:+74610959 Msa0472220:CDS
GGGCGAAGAATATGGGAATG+CGG 0.625266 3_3:+74611139 Msa0472220:CDS
ATAGTACTGCTTCGATATTG+GGG 0.625450 3_3:-74610823 None:intergenic
CCAAAACAATGGCTTCAAGA+GGG 0.625971 3_3:-74612344 None:intergenic
TGTGGTTGAAGAAGGAGCTG+TGG 0.626852 3_3:-74609705 None:intergenic
GAAGAATATGGGAATGCGGG+AGG 0.627874 3_3:+74611143 Msa0472220:CDS
GGCATGGCGTAGAGAACCAA+AGG 0.628323 3_3:+74610701 Msa0472220:CDS
GGGGTGCGAAAAGGCATGTG+GGG 0.628732 3_3:+74611739 Msa0472220:CDS
GCATATCATCCCATTTAGGT+CGG 0.629636 3_3:-74610900 None:intergenic
GAGCTGTGGAATATTTGAGG+AGG 0.632277 3_3:-74609691 None:intergenic
TGCAACTCCTGAGATGGTGA+GGG 0.632971 3_3:+74610855 Msa0472220:CDS
ATTGACACCGGCCATGAAAG+CGG 0.633342 3_3:-74611836 None:intergenic
TGGTAAAACGAGTGATGTGA+AGG 0.634891 3_3:-74609332 None:intergenic
ACGTGGATCATCCAAAACAA+TGG 0.639277 3_3:-74612355 None:intergenic
TAGAGGCCAAATATAAAGTG+TGG 0.640061 3_3:-74609355 None:intergenic
GAAAGTGCAATGGATACGAA+AGG 0.642365 3_3:+74610969 Msa0472220:CDS
TTGTAATGATCCATCATCAG+AGG 0.643905 3_3:-74611896 None:intergenic
CATGCCTGGTAACTCATAGT+CGG 0.646187 3_3:-74610684 None:intergenic
AGGCCAAATATAAAGTGTGG+TGG 0.647076 3_3:-74609352 None:intergenic
CCAAATTTGATAGTTCCACA+AGG 0.652382 3_3:+74610153 Msa0472220:CDS
GTCCTACTATTGCGTCACAA+AGG 0.655181 3_3:+74611165 Msa0472220:CDS
GTACTGCTTCGATATTGGGG+AGG 0.655617 3_3:-74610820 None:intergenic
GGAAACTATAATGGATAACG+TGG 0.662024 3_3:-74612372 None:intergenic
TACTCCGACTATGAGTTACC+AGG 0.668614 3_3:+74610680 Msa0472220:CDS
CTTGTTGAAGAGAAAGATGG+AGG 0.668763 3_3:+74610627 Msa0472220:CDS
GATGTTGGATCAAGATCGGG+CGG 0.673003 3_3:+74612181 Msa0472220:three_prime_UTR
AGATAAAGGATTGGTGACCA+AGG 0.675087 3_3:+74612014 Msa0472220:CDS
CAGAATTTATAAACTCTGTG+TGG 0.677998 3_3:+74612565 Msa0472220:three_prime_UTR
ATGTATTGTAAACATTCACA+TGG 0.678770 3_3:+74612640 Msa0472220:three_prime_UTR
GTGGAACTATCAAATTTGGT+GGG 0.683465 3_3:-74610149 None:intergenic
GTAATAGAAGAATTAACACA+AGG 0.716696 3_3:-74610053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACTAATAATTTGGAATT+TGG - chr3_3:74609252-74609271 None:intergenic 15.0%
!! AATTAAAAAGATGACAAAAT+TGG - chr3_3:74609653-74609672 None:intergenic 15.0%
!! AATAAAGAGATCAATAAAAA+GGG + chr3_3:74610110-74610129 Msa0472220:CDS 15.0%
!! TAATAAAAAGGAAACTATAA+TGG - chr3_3:74612384-74612403 None:intergenic 15.0%
!! ATTATAAAAAAACCAAATCT+AGG + chr3_3:74612443-74612462 Msa0472220:three_prime_UTR 15.0%
!! TTATAAAAAAACCAAATCTA+GGG + chr3_3:74612444-74612463 Msa0472220:three_prime_UTR 15.0%
!!! TCTAAGTTTTGTCAATTTAA+CGG - chr3_3:74609219-74609238 None:intergenic 20.0%
!! AGGTTTGAATACTAATAATT+TGG - chr3_3:74609259-74609278 None:intergenic 20.0%
!! TAAGGAGAAAAAATTAAAAG+GGG - chr3_3:74609733-74609752 None:intergenic 20.0%
!! CTAAGGAGAAAAAATTAAAA+GGG - chr3_3:74609734-74609753 None:intergenic 20.0%
!! ACTAAGGAGAAAAAATTAAA+AGG - chr3_3:74609735-74609754 None:intergenic 20.0%
!!! ACGAAAAAAATCAAATTTTG+AGG + chr3_3:74609776-74609795 Msa0472220:five_prime_UTR 20.0%
!!! CGAAAAAAATCAAATTTTGA+GGG + chr3_3:74609777-74609796 Msa0472220:five_prime_UTR 20.0%
!! AAAGAAGAATAGAATTTCAA+TGG - chr3_3:74610029-74610048 None:intergenic 20.0%
!! CAATAAAGAGATCAATAAAA+AGG + chr3_3:74610109-74610128 Msa0472220:CDS 20.0%
!! CAATTGAATTAATCCATAAT+TGG + chr3_3:74610308-74610327 Msa0472220:intron 20.0%
!! ATAAAGCTAATTTGGATATT+TGG + chr3_3:74610401-74610420 Msa0472220:intron 20.0%
!!! TTTTCAAACTTATCCAAAAT+TGG - chr3_3:74610431-74610450 None:intergenic 20.0%
!! TTTGGATAAGTTTGAAAATT+TGG + chr3_3:74610433-74610452 Msa0472220:intron 20.0%
!! TTGGATAAGTTTGAAAATTT+GGG + chr3_3:74610434-74610453 Msa0472220:intron 20.0%
!! TAATTTGAAAACTCAATAGA+AGG - chr3_3:74610767-74610786 None:intergenic 20.0%
!!! TTTTGTATTGTTGATTCAAT+AGG + chr3_3:74610792-74610811 Msa0472220:intron 20.0%
!!! CACATTTTGAAGTAATAAAA+AGG - chr3_3:74612396-74612415 None:intergenic 20.0%
!!! CTTTTTATTACTTCAAAATG+TGG + chr3_3:74612394-74612413 Msa0472220:three_prime_UTR 20.0%
!! TATAAAAAAACCAAATCTAG+GGG + chr3_3:74612445-74612464 Msa0472220:three_prime_UTR 20.0%
!!! ATAGAATACTTTTATTGCTA+CGG - chr3_3:74612603-74612622 None:intergenic 20.0%
! AGGGAAAATTAAATGGAAAT+GGG - chr3_3:74609173-74609192 None:intergenic 25.0%
! TAGGGAAAATTAAATGGAAA+TGG - chr3_3:74609174-74609193 None:intergenic 25.0%
!!! ATTTCCATTTAATTTTCCCT+AGG + chr3_3:74609173-74609192 Msa0472220:five_prime_UTR 25.0%
! TATGAAGAAGAAATGTGAAT+AGG - chr3_3:74609508-74609527 None:intergenic 25.0%
!!! TGTTTTGATTAAGACATGAA+GGG - chr3_3:74609585-74609604 None:intergenic 25.0%
! AGAGAAAGACAAAAAGATAT+GGG - chr3_3:74609609-74609628 None:intergenic 25.0%
! AAGAGAAAGACAAAAAGATA+TGG - chr3_3:74609610-74609629 None:intergenic 25.0%
! CAAAATTGGTGAAAAATAAG+AGG - chr3_3:74609639-74609658 None:intergenic 25.0%
!! AAAAAATTAAAAGGGGTATG+TGG - chr3_3:74609726-74609745 None:intergenic 25.0%
!!! GAAACTTTTTCTTGTTACAA+TGG + chr3_3:74609836-74609855 Msa0472220:exon 25.0%
! AAGAAAAACACTAACAACAT+AGG - chr3_3:74609906-74609925 None:intergenic 25.0%
!! ATGTTGTTAGTGTTTTTCTT+AGG + chr3_3:74609906-74609925 Msa0472220:CDS 25.0%
!! TTTTTCTTAGGAGTTATTGT+TGG + chr3_3:74609918-74609937 Msa0472220:CDS 25.0%
!! AATATAGGAGAATCTGAAAT+TGG - chr3_3:74610002-74610021 None:intergenic 25.0%
! AATTTCAATGGCGAAAATAT+AGG - chr3_3:74610017-74610036 None:intergenic 25.0%
! GTAATAGAAGAATTAACACA+AGG - chr3_3:74610056-74610075 None:intergenic 25.0%
! ATTAATGGAAAATTACCTTG+TGG - chr3_3:74610171-74610190 None:intergenic 25.0%
!! TTCATGTTTTTCTGTTATTG+AGG + chr3_3:74610223-74610242 Msa0472220:intron 25.0%
!! TTTTCTGTTATTGAGGAATT+AGG + chr3_3:74610230-74610249 Msa0472220:intron 25.0%
! AATTGGGAATTAAAGATAGT+AGG + chr3_3:74610378-74610397 Msa0472220:intron 25.0%
! ATAGTAGGATAAAGCTAATT+TGG + chr3_3:74610393-74610412 Msa0472220:intron 25.0%
!! GATATTTGGTTAACCAATTT+TGG + chr3_3:74610415-74610434 Msa0472220:intron 25.0%
!!! TTTGAAAATTTGGGTTGAAT+GGG + chr3_3:74610443-74610462 Msa0472220:intron 25.0%
! GCATTGTTTGAATGTTTAAT+TGG + chr3_3:74610491-74610510 Msa0472220:intron 25.0%
! AAAGACAGAGAATACATTAT+CGG + chr3_3:74611118-74611137 Msa0472220:CDS 25.0%
!!! ACTTATTTTTGTATTGACAC+CGG - chr3_3:74611851-74611870 None:intergenic 25.0%
!!! AAGATTTGGATTTGCTAATT+TGG + chr3_3:74612059-74612078 Msa0472220:CDS 25.0%
!!! AGATTTGGATTTGCTAATTT+GGG + chr3_3:74612060-74612079 Msa0472220:CDS 25.0%
! GTAAAAGATAGTAGAACTAA+AGG + chr3_3:74612082-74612101 Msa0472220:exon 25.0%
! TTTATTACTTCAAAATGTGG+AGG + chr3_3:74612397-74612416 Msa0472220:three_prime_UTR 25.0%
! ATGTATTGTAAACATTCACA+TGG + chr3_3:74612640-74612659 Msa0472220:three_prime_UTR 25.0%
TGATGTTGGAATTGAAAATG+AGG - chr3_3:74609279-74609298 None:intergenic 30.0%
!!! AAGAGTGTTGATTTTGATGT+TGG - chr3_3:74609293-74609312 None:intergenic 30.0%
TTACCACCACACTTTATATT+TGG + chr3_3:74609349-74609368 Msa0472220:five_prime_UTR 30.0%
! TTTGTGTTGGAGAATTTGTT+AGG - chr3_3:74609436-74609455 None:intergenic 30.0%
TAAACCAAAACCACTCTAAT+TGG + chr3_3:74609470-74609489 Msa0472220:five_prime_UTR 30.0%
GAAGAAATGTGAATAGGAAT+AGG - chr3_3:74609502-74609521 None:intergenic 30.0%
!!! GGTTTTGTTTTTATGGGTTT+GGG - chr3_3:74609539-74609558 None:intergenic 30.0%
!!! GAAGAGGGTTTTGTTTTTAT+GGG - chr3_3:74609545-74609564 None:intergenic 30.0%
!!! AGAAGAGGGTTTTGTTTTTA+TGG - chr3_3:74609546-74609565 None:intergenic 30.0%
GAAAGAAGATAAGAAGAAGA+GGG - chr3_3:74609560-74609579 None:intergenic 30.0%
AGAAAGAAGATAAGAAGAAG+AGG - chr3_3:74609561-74609580 None:intergenic 30.0%
!!! GTGTTTTGATTAAGACATGA+AGG - chr3_3:74609586-74609605 None:intergenic 30.0%
GAGAAAGACAAAAAGATATG+GGG - chr3_3:74609608-74609627 None:intergenic 30.0%
ATTTGAGGAGGAGAATAATT+AGG - chr3_3:74609682-74609701 None:intergenic 30.0%
AGAGGGTGAAATAAACTAAA+GGG - chr3_3:74609805-74609824 None:intergenic 30.0%
AAGAGGGTGAAATAAACTAA+AGG - chr3_3:74609806-74609825 None:intergenic 30.0%
AGTTTATTTCACCCTCTTAA+AGG + chr3_3:74609808-74609827 Msa0472220:five_prime_UTR 30.0%
GTTTATTTCACCCTCTTAAA+GGG + chr3_3:74609809-74609828 Msa0472220:five_prime_UTR 30.0%
! AGTTTCAAAACCCTTTAAGA+GGG - chr3_3:74609822-74609841 None:intergenic 30.0%
AAGTTTCAAAACCCTTTAAG+AGG - chr3_3:74609823-74609842 None:intergenic 30.0%
TATTGATGCACAAAGAATCA+GGG - chr3_3:74610094-74610113 None:intergenic 30.0%
TTATTGATGCACAAAGAATC+AGG - chr3_3:74610095-74610114 None:intergenic 30.0%
! GGAATTAGGTAGATGATTTT+TGG + chr3_3:74610244-74610263 Msa0472220:intron 30.0%
! AATCCATAATTGGTCTATGA+TGG + chr3_3:74610318-74610337 Msa0472220:intron 30.0%
TCCTTAACTACTAGTGAAAT+TGG + chr3_3:74610361-74610380 Msa0472220:intron 30.0%
CCTTAACTACTAGTGAAATT+GGG + chr3_3:74610362-74610381 Msa0472220:intron 30.0%
!! GTTTGAAAATTTGGGTTGAA+TGG + chr3_3:74610442-74610461 Msa0472220:intron 30.0%
!! GTATTGTTGATTCAATAGGA+CGG + chr3_3:74610796-74610815 Msa0472220:intron 30.0%
AATAGTACTGCTTCGATATT+GGG - chr3_3:74610827-74610846 None:intergenic 30.0%
AAATAGTACTGCTTCGATAT+TGG - chr3_3:74610828-74610847 None:intergenic 30.0%
TCAAATCAAATCAAGCGAAA+AGG - chr3_3:74611002-74611021 None:intergenic 30.0%
AAGACAGAGAATACATTATC+GGG + chr3_3:74611119-74611138 Msa0472220:CDS 30.0%
! TTGAAGTCATTGATTGAAGA+TGG + chr3_3:74611210-74611229 Msa0472220:intron 30.0%
!! TATTTGCTTTTCTTCCTTTC+AGG + chr3_3:74611270-74611289 Msa0472220:intron 30.0%
!! ATTTGCTTTTCTTCCTTTCA+GGG + chr3_3:74611271-74611290 Msa0472220:intron 30.0%
TAGATGTGTATTACTCTAGT+TGG + chr3_3:74611338-74611357 Msa0472220:CDS 30.0%
GTTGAATCAAAGAGAGATAA+TGG + chr3_3:74611643-74611662 Msa0472220:intron 30.0%
TTGTAGTCTAGATAAAGGAT+TGG + chr3_3:74612005-74612024 Msa0472220:CDS 30.0%
!! TTTGGTGTTGCTAAAAGATT+TGG + chr3_3:74612045-74612064 Msa0472220:CDS 30.0%
AAAGATAGTAGAACTAAAGG+TGG + chr3_3:74612085-74612104 Msa0472220:exon 30.0%
! GAGTTTGAAATTTAGACCAT+TGG + chr3_3:74612250-74612269 Msa0472220:three_prime_UTR 30.0%
CACAGAGTTTATAAATTCTG+TGG - chr3_3:74612565-74612584 None:intergenic 30.0%
CAGAATTTATAAACTCTGTG+TGG + chr3_3:74612565-74612584 Msa0472220:three_prime_UTR 30.0%
AAACATTCACATGGTAAAGT+TGG + chr3_3:74612649-74612668 Msa0472220:three_prime_UTR 30.0%
! GAAGGAAATTGAGGTATTAG+TGG - chr3_3:74609147-74609166 None:intergenic 35.0%
TTAAATGGAAATGGGAGTGA+AGG - chr3_3:74609165-74609184 None:intergenic 35.0%
TGGTCCTAGGGAAAATTAAA+TGG - chr3_3:74609180-74609199 None:intergenic 35.0%
TAGAGGCCAAATATAAAGTG+TGG - chr3_3:74609358-74609377 None:intergenic 35.0%
AGATTCCCCAAATAACTCAT+TGG + chr3_3:74609377-74609396 Msa0472220:five_prime_UTR 35.0%
AAGAGCCAATGAGTTATTTG+GGG - chr3_3:74609385-74609404 None:intergenic 35.0%
GAAGAGCCAATGAGTTATTT+GGG - chr3_3:74609386-74609405 None:intergenic 35.0%
TGAAGAGCCAATGAGTTATT+TGG - chr3_3:74609387-74609406 None:intergenic 35.0%
!!! GAGTGGTTTTGGTTTATGTT+AGG - chr3_3:74609466-74609485 None:intergenic 35.0%
! TGAACCAATTAGAGTGGTTT+TGG - chr3_3:74609477-74609496 None:intergenic 35.0%
TAGGAATGAACCAATTAGAG+TGG - chr3_3:74609483-74609502 None:intergenic 35.0%
!!! GGGTTTTGTTTTTATGGGTT+TGG - chr3_3:74609540-74609559 None:intergenic 35.0%
TGGTGAAAAATAAGAGGAAG+AGG - chr3_3:74609633-74609652 None:intergenic 35.0%
AATGGAAAACCCTGCAATTT+GGG + chr3_3:74609854-74609873 Msa0472220:exon 35.0%
CATTAAAACCCCAAATTGCA+GGG - chr3_3:74609866-74609885 None:intergenic 35.0%
TCTTAGGAGTTATTGTTGGT+TGG + chr3_3:74609922-74609941 Msa0472220:CDS 35.0%
! GAGTTATTGTTGGTTGGTTA+TGG + chr3_3:74609928-74609947 Msa0472220:CDS 35.0%
!! ACCGAAATGGATTGTTTCAT+TGG + chr3_3:74609953-74609972 Msa0472220:CDS 35.0%
GCCAATGAAACAATCCATTT+CGG - chr3_3:74609957-74609976 None:intergenic 35.0%
GTGGAACTATCAAATTTGGT+GGG - chr3_3:74610152-74610171 None:intergenic 35.0%
TGTGGAACTATCAAATTTGG+TGG - chr3_3:74610153-74610172 None:intergenic 35.0%
CCTTGTGGAACTATCAAATT+TGG - chr3_3:74610156-74610175 None:intergenic 35.0%
! CCAAATTTGATAGTTCCACA+AGG + chr3_3:74610153-74610172 Msa0472220:CDS 35.0%
CCCAATTTCACTAGTAGTTA+AGG - chr3_3:74610365-74610384 None:intergenic 35.0%
!! ACCATTAGAAGTATCTTCAC+CGG - chr3_3:74610574-74610593 None:intergenic 35.0%
!! AAGCTTGTTGAAGAGAAAGA+TGG + chr3_3:74610624-74610643 Msa0472220:CDS 35.0%
TTATCCATCATCTGTATCCA+AGG - chr3_3:74610657-74610676 None:intergenic 35.0%
CTTCTATCGTAACATACCTT+TGG - chr3_3:74610720-74610739 None:intergenic 35.0%
! CAAAGGTATGTTACGATAGA+AGG + chr3_3:74610718-74610737 Msa0472220:intron 35.0%
ATAGTACTGCTTCGATATTG+GGG - chr3_3:74610826-74610845 None:intergenic 35.0%
ATGATCAATTCCGACCTAAA+TGG + chr3_3:74610890-74610909 Msa0472220:CDS 35.0%
TGATCAATTCCGACCTAAAT+GGG + chr3_3:74610891-74610910 Msa0472220:CDS 35.0%
ACAAGCATATCATCCCATTT+AGG - chr3_3:74610907-74610926 None:intergenic 35.0%
TCTCTGTCTTTACAGAAGAA+GGG - chr3_3:74611109-74611128 None:intergenic 35.0%
TTCTCTGTCTTTACAGAAGA+AGG - chr3_3:74611110-74611129 None:intergenic 35.0%
!! TTTGCTTTTCTTCCTTTCAG+GGG + chr3_3:74611272-74611291 Msa0472220:intron 35.0%
! TTTTCTTGTCTTGGGATTGA+AGG - chr3_3:74611307-74611326 None:intergenic 35.0%
! GTCTAGGTTTTTCTTGTCTT+GGG - chr3_3:74611315-74611334 None:intergenic 35.0%
TAATACACATCTACACGTCT+AGG - chr3_3:74611331-74611350 None:intergenic 35.0%
AGCCTATATAACATGTCAAG+CGG - chr3_3:74611580-74611599 None:intergenic 35.0%
CTCTTCCATCATGAAGAAAT+GGG + chr3_3:74611691-74611710 Msa0472220:CDS 35.0%
GAATTCCCATTTCTTCATGA+TGG - chr3_3:74611699-74611718 None:intergenic 35.0%
ATGAAGAAATGGGAATTCCT+TGG + chr3_3:74611701-74611720 Msa0472220:CDS 35.0%
TGAAGAAATGGGAATTCCTT+GGG + chr3_3:74611702-74611721 Msa0472220:CDS 35.0%
TATCAAGAAGCAAAAGCTTC+TGG + chr3_3:74611796-74611815 Msa0472220:CDS 35.0%
TTGTAATGATCCATCATCAG+AGG - chr3_3:74611899-74611918 None:intergenic 35.0%
CTTGCTTGTAGTCTAGATAA+AGG + chr3_3:74612000-74612019 Msa0472220:CDS 35.0%
AACACCAAATATAACAGCCT+TGG - chr3_3:74612034-74612053 None:intergenic 35.0%
ATCAATCTCTTGAAGGGATT+TGG + chr3_3:74612109-74612128 Msa0472220:three_prime_UTR 35.0%
CATTCAAATGCGCATTACAT+TGG + chr3_3:74612156-74612175 Msa0472220:three_prime_UTR 35.0%
!! GGAAACTATAATGGATAACG+TGG - chr3_3:74612375-74612394 None:intergenic 35.0%
!!! AAATGTGGAGGCTCTTTTTT+TGG + chr3_3:74612409-74612428 Msa0472220:three_prime_UTR 35.0%
TGAATTCTTAGACCATGAGT+AGG + chr3_3:74612533-74612552 Msa0472220:three_prime_UTR 35.0%
AATGGGAGTGAAGGAAATTG+AGG - chr3_3:74609156-74609175 None:intergenic 40.0%
TGATTGTTTGCTTGGTCCTA+GGG - chr3_3:74609192-74609211 None:intergenic 40.0%
TTGATTGTTTGCTTGGTCCT+AGG - chr3_3:74609193-74609212 None:intergenic 40.0%
TGGTAAAACGAGTGATGTGA+AGG - chr3_3:74609335-74609354 None:intergenic 40.0%
AGGCCAAATATAAAGTGTGG+TGG - chr3_3:74609355-74609374 None:intergenic 40.0%
GAGTTATTTGGGGAATCTAG+AGG - chr3_3:74609375-74609394 None:intergenic 40.0%
! GTTAGGTGTTGTGTTTGTGT+TGG - chr3_3:74609449-74609468 None:intergenic 40.0%
AAGGAGCTGTGGAATATTTG+AGG - chr3_3:74609697-74609716 None:intergenic 40.0%
!! AATGCGTTCTGAGGAAACTA+AGG - chr3_3:74609751-74609770 None:intergenic 40.0%
TCGTTATAGAATGCGTTCTG+AGG - chr3_3:74609760-74609779 None:intergenic 40.0%
CAATGGAAAACCCTGCAATT+TGG + chr3_3:74609853-74609872 Msa0472220:exon 40.0%
ATGGAAAACCCTGCAATTTG+GGG + chr3_3:74609855-74609874 Msa0472220:CDS 40.0%
GCATTAAAACCCCAAATTGC+AGG - chr3_3:74609867-74609886 None:intergenic 40.0%
GTTGGTTATGGAAACCGAAA+TGG + chr3_3:74609940-74609959 Msa0472220:CDS 40.0%
ATGCACAAAGAATCAGGGTT+TGG - chr3_3:74610089-74610108 None:intergenic 40.0%
GCACCATCATAGACCAATTA+TGG - chr3_3:74610324-74610343 None:intergenic 40.0%
!! GAAAATTTGGGTTGAATGGG+TGG + chr3_3:74610446-74610465 Msa0472220:intron 40.0%
CTATGCAGTTCTCAGAAATC+CGG + chr3_3:74610552-74610571 Msa0472220:intron 40.0%
TCCGGTGAAGATACTTCTAA+TGG + chr3_3:74610570-74610589 Msa0472220:CDS 40.0%
CTTGTTGAAGAGAAAGATGG+AGG + chr3_3:74610627-74610646 Msa0472220:CDS 40.0%
TCTTCCTTGGATACAGATGA+TGG + chr3_3:74610650-74610669 Msa0472220:CDS 40.0%
GCATATCATCCCATTTAGGT+CGG - chr3_3:74610903-74610922 None:intergenic 40.0%
TCGTATCCATTGCACTTTCA+TGG - chr3_3:74610968-74610987 None:intergenic 40.0%
! GAAAGTGCAATGGATACGAA+AGG + chr3_3:74610969-74610988 Msa0472220:CDS 40.0%
CTCTGTCTTTACAGAAGAAG+GGG - chr3_3:74611108-74611127 None:intergenic 40.0%
ACATTATCGGGCGAAGAATA+TGG + chr3_3:74611131-74611150 Msa0472220:CDS 40.0%
CATTATCGGGCGAAGAATAT+GGG + chr3_3:74611132-74611151 Msa0472220:CDS 40.0%
TACCTTTGTGACGCAATAGT+AGG - chr3_3:74611170-74611189 None:intergenic 40.0%
!! TTGCTTTTCTTCCTTTCAGG+GGG + chr3_3:74611273-74611292 Msa0472220:intron 40.0%
! CGTCTAGGTTTTTCTTGTCT+TGG - chr3_3:74611316-74611335 None:intergenic 40.0%
CACCGCTTGACATGTTATAT+AGG + chr3_3:74611575-74611594 Msa0472220:intron 40.0%
GCTCTTCCATCATGAAGAAA+TGG + chr3_3:74611690-74611709 Msa0472220:CDS 40.0%
CTTGGGAAATTGCAAAGCTT+GGG + chr3_3:74611719-74611738 Msa0472220:CDS 40.0%
TTGGGAAATTGCAAAGCTTG+GGG + chr3_3:74611720-74611739 Msa0472220:CDS 40.0%
ATGGTACAAAAGATTGAGCC+CGG + chr3_3:74611763-74611782 Msa0472220:CDS 40.0%
TTCTTGATAAGCGCGTAAAC+CGG - chr3_3:74611785-74611804 None:intergenic 40.0%
GTCAGAAGTAATCGCACTTT+CGG - chr3_3:74611923-74611942 None:intergenic 40.0%
TACTTCTGACGACAAACCAA+AGG + chr3_3:74611933-74611952 Msa0472220:CDS 40.0%
ACTTCTGACGACAAACCAAA+GGG + chr3_3:74611934-74611953 Msa0472220:CDS 40.0%
AATGACTAGCATCTTCGGTA+CGG - chr3_3:74611965-74611984 None:intergenic 40.0%
! AGATAAAGGATTGGTGACCA+AGG + chr3_3:74612014-74612033 Msa0472220:CDS 40.0%
GTGACCAAGGCTGTTATATT+TGG + chr3_3:74612027-74612046 Msa0472220:CDS 40.0%
AGGTGGAATCAATCTCTTGA+AGG + chr3_3:74612102-74612121 Msa0472220:three_prime_UTR 40.0%
GGTGGAATCAATCTCTTGAA+GGG + chr3_3:74612103-74612122 Msa0472220:three_prime_UTR 40.0%
! CGCATTACATTGGTTGATGT+TGG + chr3_3:74612166-74612185 Msa0472220:three_prime_UTR 40.0%
! GGTTGATGTTGGATCAAGAT+CGG + chr3_3:74612177-74612196 Msa0472220:three_prime_UTR 40.0%
GTTGATGTTGGATCAAGATC+GGG + chr3_3:74612178-74612197 Msa0472220:three_prime_UTR 40.0%
ACTGTTCGATCAAGATCCAA+TGG - chr3_3:74612269-74612288 None:intergenic 40.0%
CCAAAACAATGGCTTCAAGA+GGG - chr3_3:74612347-74612366 None:intergenic 40.0%
TCCAAAACAATGGCTTCAAG+AGG - chr3_3:74612348-74612367 None:intergenic 40.0%
ACGTGGATCATCCAAAACAA+TGG - chr3_3:74612358-74612377 None:intergenic 40.0%
CTTTCTCATTCCCCTAGATT+TGG - chr3_3:74612458-74612477 None:intergenic 40.0%
!! AAAGTCTCGGCTTGTTGATT+TGG + chr3_3:74612474-74612493 Msa0472220:three_prime_UTR 40.0%
!! AAGTCTCGGCTTGTTGATTT+GGG + chr3_3:74612475-74612494 Msa0472220:three_prime_UTR 40.0%
ACGGCGTTTGATTGTTTGCT+TGG - chr3_3:74609200-74609219 None:intergenic 45.0%
GAGCTGTGGAATATTTGAGG+AGG - chr3_3:74609694-74609713 None:intergenic 45.0%
! AAGGGGTATGTGGTTGAAGA+AGG - chr3_3:74609716-74609735 None:intergenic 45.0%
! TTTGGTGGGTGAAGAAGAAG+AGG - chr3_3:74610138-74610157 None:intergenic 45.0%
AGAAAGATGGAGGTCTTCCT+TGG + chr3_3:74610637-74610656 Msa0472220:CDS 45.0%
TACTCCGACTATGAGTTACC+AGG + chr3_3:74610680-74610699 Msa0472220:CDS 45.0%
CATGCCTGGTAACTCATAGT+CGG - chr3_3:74610687-74610706 None:intergenic 45.0%
TACTGCTTCGATATTGGGGA+GGG - chr3_3:74610822-74610841 None:intergenic 45.0%
TGAAGATGCAACTCCTGAGA+TGG + chr3_3:74610849-74610868 Msa0472220:CDS 45.0%
AACAAATCCCTCACCATCTC+AGG - chr3_3:74610865-74610884 None:intergenic 45.0%
! AGATGGTGAGGGATTTGTTC+TGG + chr3_3:74610866-74610885 Msa0472220:CDS 45.0%
! GATGGTGAGGGATTTGTTCT+GGG + chr3_3:74610867-74610886 Msa0472220:CDS 45.0%
!! TTAGAAGAGTGTCCTACCAC+TGG + chr3_3:74610940-74610959 Msa0472220:CDS 45.0%
ACTTTCATGGTTCCAGTGGT+AGG - chr3_3:74610955-74610974 None:intergenic 45.0%
TTGCACTTTCATGGTTCCAG+TGG - chr3_3:74610959-74610978 None:intergenic 45.0%
! CTGGAACCATGAAAGTGCAA+TGG + chr3_3:74610959-74610978 Msa0472220:CDS 45.0%
GTCCTACTATTGCGTCACAA+AGG + chr3_3:74611165-74611184 Msa0472220:CDS 45.0%
CCAAGCTTTGCAATTTCCCA+AGG - chr3_3:74611721-74611740 None:intergenic 45.0%
CCTTGGGAAATTGCAAAGCT+TGG + chr3_3:74611718-74611737 Msa0472220:CDS 45.0%
TCTTGATAAGCGCGTAAACC+GGG - chr3_3:74611784-74611803 None:intergenic 45.0%
CCTGAGTACTTGCAATCCAT+CGG + chr3_3:74611871-74611890 Msa0472220:CDS 45.0%
GTACCGAAGATGCTAGTCAT+TGG + chr3_3:74611964-74611983 Msa0472220:CDS 45.0%
CCACCAATGACTAGCATCTT+CGG - chr3_3:74611970-74611989 None:intergenic 45.0%
! CCCTCTTGAAGCCATTGTTT+TGG + chr3_3:74612344-74612363 Msa0472220:three_prime_UTR 45.0%
CTAGGGGAATGAGAAAGTCT+CGG + chr3_3:74612461-74612480 Msa0472220:three_prime_UTR 45.0%
!! GCTTGTTGATTTGGGAGAGA+GGG + chr3_3:74612483-74612502 Msa0472220:three_prime_UTR 45.0%
!!! CTGTGGTTTTGACCTACTCA+TGG - chr3_3:74612548-74612567 None:intergenic 45.0%
!! TAACTTATTTATTTAATTAA+TGG - chr3_3:74610186-74610205 None:intergenic 5.0%
TGTGGTTGAAGAAGGAGCTG+TGG - chr3_3:74609708-74609727 None:intergenic 50.0%
CGACTATGAGTTACCAGGCA+TGG + chr3_3:74610685-74610704 Msa0472220:CDS 50.0%
GTACTGCTTCGATATTGGGG+AGG - chr3_3:74610823-74610842 None:intergenic 50.0%
ATGCAACTCCTGAGATGGTG+AGG + chr3_3:74610854-74610873 Msa0472220:CDS 50.0%
TGCAACTCCTGAGATGGTGA+GGG + chr3_3:74610855-74610874 Msa0472220:CDS 50.0%
GGGCGAAGAATATGGGAATG+CGG + chr3_3:74611139-74611158 Msa0472220:CDS 50.0%
GGCGAAGAATATGGGAATGC+GGG + chr3_3:74611140-74611159 Msa0472220:CDS 50.0%
GAAGAATATGGGAATGCGGG+AGG + chr3_3:74611143-74611162 Msa0472220:CDS 50.0%
AGGACAATCTACCCCCTGAA+AGG - chr3_3:74611287-74611306 None:intergenic 50.0%
! TCTAGTTGGTGCATTCGAGC+AGG + chr3_3:74611352-74611371 Msa0472220:CDS 50.0%
ATGAAAGCGGAACGAGAGAG+TGG - chr3_3:74611826-74611845 None:intergenic 50.0%
ACTCTCTCGTTCCGCTTTCA+TGG + chr3_3:74611825-74611844 Msa0472220:CDS 50.0%
ATTGACACCGGCCATGAAAG+CGG - chr3_3:74611839-74611858 None:intergenic 50.0%
!! CCGATGGATTGCAAGTACTC+AGG - chr3_3:74611874-74611893 None:intergenic 50.0%
TCCATCGGATCCTCTGATGA+TGG + chr3_3:74611886-74611905 Msa0472220:CDS 50.0%
TCCATCATCAGAGGATCCGA+TGG - chr3_3:74611890-74611909 None:intergenic 50.0%
CCGAAGATGCTAGTCATTGG+TGG + chr3_3:74611967-74611986 Msa0472220:CDS 50.0%
GATGTTGGATCAAGATCGGG+CGG + chr3_3:74612181-74612200 Msa0472220:three_prime_UTR 50.0%
!! GGCTTGTTGATTTGGGAGAG+AGG + chr3_3:74612482-74612501 Msa0472220:three_prime_UTR 50.0%
! TTGGTTCTCTACGCCATGCC+TGG - chr3_3:74610701-74610720 None:intergenic 55.0%
GGCATGGCGTAGAGAACCAA+AGG + chr3_3:74610701-74610720 Msa0472220:CDS 55.0%
GCAAAGCTTGGGGTGCGAAA+AGG + chr3_3:74611730-74611749 Msa0472220:CDS 55.0%
! TTGGGGTGCGAAAAGGCATG+TGG + chr3_3:74611737-74611756 Msa0472220:CDS 55.0%
! TGGGGTGCGAAAAGGCATGT+GGG + chr3_3:74611738-74611757 Msa0472220:CDS 55.0%
! GCGAAAAGGCATGTGGGGAA+TGG + chr3_3:74611744-74611763 Msa0472220:CDS 55.0%
TCTCGTTCCGCTTTCATGGC+CGG + chr3_3:74611829-74611848 Msa0472220:CDS 55.0%
TTCGGTACGGTCATGCCCTT+TGG - chr3_3:74611952-74611971 None:intergenic 55.0%
! GGGGTGCGAAAAGGCATGTG+GGG + chr3_3:74611739-74611758 Msa0472220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74609135 74612733 74609135 ID=Msa0472220;Name=Msa0472220
chr3_3 mRNA 74609135 74612733 74609135 ID=Msa0472220-mRNA-1;Parent=Msa0472220;Name=Msa0472220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=720|1|1|1|1|1|6|641|424
chr3_3 exon 74609135 74610174 74609135 ID=Msa0472220-mRNA-1:exon:19123;Parent=Msa0472220-mRNA-1
chr3_3 exon 74610560 74610722 74610560 ID=Msa0472220-mRNA-1:exon:19124;Parent=Msa0472220-mRNA-1
chr3_3 exon 74610814 74610990 74610814 ID=Msa0472220-mRNA-1:exon:19125;Parent=Msa0472220-mRNA-1
chr3_3 exon 74611103 74611186 74611103 ID=Msa0472220-mRNA-1:exon:19126;Parent=Msa0472220-mRNA-1
chr3_3 exon 74611292 74611373 74611292 ID=Msa0472220-mRNA-1:exon:19127;Parent=Msa0472220-mRNA-1
chr3_3 exon 74611644 74612733 74611644 ID=Msa0472220-mRNA-1:exon:19128;Parent=Msa0472220-mRNA-1
chr3_3 five_prime_UTR 74609135 74609854 74609135 ID=Msa0472220-mRNA-1:five_prime_utr;Parent=Msa0472220-mRNA-1
chr3_3 CDS 74609855 74610174 74609855 ID=Msa0472220-mRNA-1:cds;Parent=Msa0472220-mRNA-1
chr3_3 CDS 74610560 74610722 74610560 ID=Msa0472220-mRNA-1:cds;Parent=Msa0472220-mRNA-1
chr3_3 CDS 74610814 74610990 74610814 ID=Msa0472220-mRNA-1:cds;Parent=Msa0472220-mRNA-1
chr3_3 CDS 74611103 74611186 74611103 ID=Msa0472220-mRNA-1:cds;Parent=Msa0472220-mRNA-1
chr3_3 CDS 74611292 74611373 74611292 ID=Msa0472220-mRNA-1:cds;Parent=Msa0472220-mRNA-1
chr3_3 CDS 74611644 74612092 74611644 ID=Msa0472220-mRNA-1:cds;Parent=Msa0472220-mRNA-1
chr3_3 three_prime_UTR 74612093 74612733 74612093 ID=Msa0472220-mRNA-1:three_prime_utr;Parent=Msa0472220-mRNA-1
Gene Sequence

>Msa0472220

ATGGAAAACCCTGCAATTTGGGGTTTTAATGCAACGATGTTTATGAGTCCTATGTTGTTAGTGTTTTTCTTAGGAGTTATTGTTGGTTGGTTATGGAAACCGAAATGGATTGTTTCATTGGCTAAGTCTTTTGATTTAGCTTCACCAATTTCAGATTCTCCTATATTTTCGCCATTGAAATTCTATTCTTCTTTGTCTCCTTGTGTTAATTCTTCTATTACAATGCAAAATCCAAACCCTGATTCTTTGTGCATCAATAAAGAGATCAATAAAAAGGGTTCCTCTTCTTCTTCACCCACCAAATTTGATAGTTCCACAAGTTCTCAGAAATCCGGTGAAGATACTTCTAATGGTGTTACAATCGATGATTTACATCATTTATACAAGCTTGTTGAAGAGAAAGATGGAGGTCTTCCTTGGATACAGATGATGGATAAATCTACTCCGACTATGAGTTACCAGGCATGGCGTAGAGAACCAAAGGACGGCCCTCCCCAATATCGAAGCAGTACTATTTTTGAAGATGCAACTCCTGAGATGGTGAGGGATTTGTTCTGGGATGATCAATTCCGACCTAAATGGGATGATATGCTTGTGAACTCAACAACATTAGAAGAGTGTCCTACCACTGGAACCATGAAAGTGCAATGGATACGAAAGTTCCCCTTCTTCTGTAAAGACAGAGAATACATTATCGGGCGAAGAATATGGGAATGCGGGAGGTCCTACTATTGCGTCACAAAGGGGGTAGATTGTCCTTCAATCCCAAGACAAGAAAAACCTAGACGTGTAGATGTGTATTACTCTAGTTGGTGCATTCGAGCAGTTGAATCAAAGAGAGATAATGGTCAACTGACTGCATGTGAAGTTTTGCTCTTCCATCATGAAGAAATGGGAATTCCTTGGGAAATTGCAAAGCTTGGGGTGCGAAAAGGCATGTGGGGAATGGTACAAAAGATTGAGCCCGGTTTACGCGCTTATCAAGAAGCAAAAGCTTCTGGAGCTCCACTCTCTCGTTCCGCTTTCATGGCCGGTGTCAATACAAAAATAAGTCCTGAGTACTTGCAATCCATCGGATCCTCTGATGATGGATCATTACAAACCGAAAGTGCGATTACTTCTGACGACAAACCAAAGGGCATGACCGTACCGAAGATGCTAGTCATTGGTGGTGCTGTTGCTCTTGCTTGTAGTCTAGATAAAGGATTGGTGACCAAGGCTGTTATATTTGGTGTTGCTAAAAGATTTGGATTTGCTAATTTGGGTAAAAGATAG
Protein sequence

>Msa0472220

MENPAIWGFNATMFMSPMLLVFFLGVIVGWLWKPKWIVSLAKSFDLASPISDSPIFSPLKFYSSLSPCVNSSITMQNPNPDSLCINKEINKKGSSSSSPTKFDSSTSSQKSGEDTSNGVTIDDLHHLYKLVEEKDGGLPWIQMMDKSTPTMSYQAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDDQFRPKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWECGRSYYCVTKGVDCPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEVLLFHHEEMGIPWEIAKLGVRKGMWGMVQKIEPGLRAYQEAKASGAPLSRSAFMAGVNTKISPEYLQSIGSSDDGSLQTESAITSDDKPKGMTVPKMLVIGGAVALACSLDKGLVTKAVIFGVAKRFGFANLGKR*