Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518840 | AES96022.1 | 71.839 | 174 | 26 | 2 | 19 | 169 | 30 | 203 | 5.94e-66 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518840 | sp|P93024|ARFE_ARATH | 43.448 | 145 | 55 | 4 | 3 | 120 | 243 | 387 | 7.21e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518840 | G7JXN7 | 71.839 | 174 | 26 | 2 | 19 | 169 | 30 | 203 | 2.84e-66 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428070 | Msa0518840 | 0.806065 | 9.857904e-50 | -8.615850e-47 |
| Msa0474420 | Msa0518840 | 0.993214 | 3.269107e-198 | -8.615850e-47 |
| Msa0518840 | Msa1237350 | 0.809450 | 1.881269e-50 | -8.615850e-47 |
| Msa0518840 | Msa1407600 | 0.804728 | 1.878900e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518840 | MtrunA17_Chr1g0156321 | 42.105 | 171 | 67 | 5 | 3 | 141 | 231 | 401 | 7.09e-24 | 99.0 |
| Msa0518840 | MtrunA17_Chr2g0285461 | 33.333 | 141 | 67 | 3 | 7 | 120 | 216 | 356 | 4.23e-14 | 70.5 |
| Msa0518840 | MtrunA17_Chr4g0070181 | 37.931 | 145 | 62 | 4 | 3 | 120 | 211 | 354 | 4.77e-14 | 70.5 |
| Msa0518840 | MtrunA17_Chr3g0109391 | 41.837 | 98 | 45 | 1 | 7 | 92 | 219 | 316 | 1.70e-13 | 68.9 |
| Msa0518840 | MtrunA17_Chr5g0433301 | 40.777 | 103 | 49 | 1 | 7 | 97 | 217 | 319 | 9.87e-13 | 66.6 |
| Msa0518840 | MtrunA17_Chr2g0301251 | 34.694 | 147 | 64 | 6 | 3 | 120 | 211 | 354 | 7.51e-12 | 63.9 |
| Msa0518840 | MtrunA17_Chr8g0376771 | 38.776 | 98 | 48 | 1 | 7 | 92 | 215 | 312 | 1.96e-11 | 62.8 |
| Msa0518840 | MtrunA17_Chr8g0389081 | 37.931 | 145 | 63 | 4 | 3 | 120 | 221 | 365 | 5.64e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518840 | AT1G19850.2 | 43.448 | 145 | 55 | 4 | 3 | 120 | 232 | 376 | 6.97e-23 | 96.3 |
| Msa0518840 | AT1G19850.1 | 43.448 | 145 | 55 | 4 | 3 | 120 | 243 | 387 | 7.33e-23 | 96.3 |
| Msa0518840 | AT1G19220.1 | 39.310 | 145 | 60 | 5 | 3 | 120 | 211 | 354 | 8.62e-14 | 70.1 |
| Msa0518840 | AT1G30330.1 | 31.724 | 145 | 72 | 3 | 3 | 120 | 212 | 356 | 7.80e-13 | 67.4 |
| Msa0518840 | AT1G30330.3 | 31.724 | 145 | 72 | 3 | 3 | 120 | 214 | 358 | 7.87e-13 | 67.4 |
| Msa0518840 | AT1G30330.2 | 31.724 | 145 | 72 | 3 | 3 | 120 | 214 | 358 | 7.87e-13 | 67.4 |
| Msa0518840 | AT5G20730.3 | 34.932 | 146 | 66 | 4 | 3 | 120 | 212 | 356 | 1.29e-12 | 66.6 |
| Msa0518840 | AT5G20730.1 | 34.932 | 146 | 66 | 4 | 3 | 120 | 212 | 356 | 1.42e-12 | 66.6 |
| Msa0518840 | AT5G20730.2 | 34.483 | 145 | 67 | 4 | 3 | 120 | 212 | 355 | 8.97e-12 | 64.3 |
| Msa0518840 | AT5G37020.3 | 39.216 | 102 | 50 | 1 | 3 | 92 | 116 | 217 | 1.31e-11 | 63.5 |
| Msa0518840 | AT5G37020.2 | 39.216 | 102 | 50 | 2 | 3 | 92 | 211 | 312 | 1.39e-11 | 63.5 |
| Msa0518840 | AT5G37020.1 | 39.216 | 102 | 50 | 2 | 3 | 92 | 211 | 312 | 1.40e-11 | 63.5 |
Find 47 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTACTCTTGTGTTTA+TGG | 0.105939 | 3_4:-70731043 | Msa0518840:CDS |
| TTAACCTTTCTGCAGCGATA+TGG | 0.289310 | 3_4:-70732426 | Msa0518840:intron |
| ATTCTTACTCTTGTGTTTAT+GGG | 0.295461 | 3_4:-70731042 | Msa0518840:CDS |
| GTCCCAAGAACAAACTCTAT+TGG | 0.319310 | 3_4:+70732294 | None:intergenic |
| AACCCAATAGAGTTTGTTCT+TGG | 0.329589 | 3_4:-70732297 | Msa0518840:CDS |
| TCCCAAGAACAAACTCTATT+GGG | 0.339053 | 3_4:+70732295 | None:intergenic |
| AGAAATCACAATTGCTAGTT+GGG | 0.361412 | 3_4:-70732965 | Msa0518840:CDS |
| CTTCGACATCGAGTTCTAAA+AGG | 0.371968 | 3_4:-70732252 | Msa0518840:CDS |
| TCTAAAAGGCCGTTACAATC+TGG | 0.375045 | 3_4:-70732238 | Msa0518840:CDS |
| ACGTGGGACAAGCCAGGTTG+TGG | 0.388913 | 3_4:-70732326 | Msa0518840:CDS |
| AGCAGCAACAAGCGCATCAA+TGG | 0.405726 | 3_4:+70732878 | None:intergenic |
| GCAGCAACAAGCGCATCAAT+GGG | 0.418539 | 3_4:+70732879 | None:intergenic |
| TAACCTTTCTGCAGCGATAT+GGG | 0.426316 | 3_4:-70732425 | Msa0518840:intron |
| TTTGTCTCTCAATTGTCCAT+TGG | 0.440203 | 3_4:-70732650 | Msa0518840:CDS |
| CCGTTACAATCTGGATTGTC+TGG | 0.443879 | 3_4:-70732229 | Msa0518840:intron |
| CGTGGGACAAGCCAGGTTGT+GGG | 0.450757 | 3_4:-70732325 | Msa0518840:CDS |
| GTGTTTATGGGATGTCTCAC+GGG | 0.456735 | 3_4:-70731030 | Msa0518840:CDS |
| CACAATTGCTAGTTGGGGTC+AGG | 0.457568 | 3_4:-70732959 | Msa0518840:CDS |
| GAGAAATCACAATTGCTAGT+TGG | 0.465725 | 3_4:-70732966 | Msa0518840:CDS |
| TCTCAACTACACTACTATCT+TGG | 0.467867 | 3_4:+70732012 | None:intergenic |
| TGTGTTTATGGGATGTCTCA+CGG | 0.468124 | 3_4:-70731031 | Msa0518840:CDS |
| ACCCAATAGAGTTTGTTCTT+GGG | 0.481411 | 3_4:-70732296 | Msa0518840:CDS |
| GGAATGCATCCCGGCTTCAA+TGG | 0.490579 | 3_4:+70730960 | None:intergenic |
| AGATAGTAGTGTAGTTGAGA+TGG | 0.502287 | 3_4:-70732009 | Msa0518840:CDS |
| TAAGATGATGACTTCATCAA+TGG | 0.510939 | 3_4:+70731003 | None:intergenic |
| ATTGATGATACCATTGAAGC+CGG | 0.520511 | 3_4:-70730970 | Msa0518840:CDS |
| TCTTTGGATGGAATGCATCC+CGG | 0.523155 | 3_4:+70730951 | None:intergenic |
| AGTGTAGTTGAGATGGAAGG+TGG | 0.537688 | 3_4:-70732002 | Msa0518840:intron |
| AGTAGTGTAGTTGAGATGGA+AGG | 0.544496 | 3_4:-70732005 | Msa0518840:CDS |
| ATGAAGTCATCATCTTATGA+AGG | 0.553019 | 3_4:-70730997 | Msa0518840:CDS |
| ATGAAATGTCAATTGTTACA+AGG | 0.556474 | 3_4:-70732992 | Msa0518840:exon |
| TGGGACAAGCCAGGTTGTGG+GGG | 0.556761 | 3_4:-70732323 | Msa0518840:CDS |
| AAGTGTACGTGGGACAAGCC+AGG | 0.556937 | 3_4:-70732332 | Msa0518840:CDS |
| GCATTGTTGTATGTTGAAAG+TGG | 0.558663 | 3_4:+70732677 | None:intergenic |
| TTAGCAGAAAGGACTGATGA+TGG | 0.562029 | 3_4:+70732909 | None:intergenic |
| TGGGCATATTATTAGCAGAA+AGG | 0.573682 | 3_4:+70732898 | None:intergenic |
| CAAAAGCATTTGATACGCGC+TGG | 0.577963 | 3_4:-70732601 | Msa0518840:intron |
| GTGGGACAAGCCAGGTTGTG+GGG | 0.605722 | 3_4:-70732324 | Msa0518840:CDS |
| TGAAATGTCAATTGTTACAA+GGG | 0.606701 | 3_4:-70732991 | Msa0518840:exon |
| CATATCATATCTCAATCCAA+TGG | 0.607038 | 3_4:+70732634 | None:intergenic |
| GGGACAAGCCAGGTTGTGGG+GGG | 0.611452 | 3_4:-70732322 | Msa0518840:CDS |
| TTGATGATACCATTGAAGCC+GGG | 0.618042 | 3_4:-70730969 | Msa0518840:CDS |
| GAAATCACAATTGCTAGTTG+GGG | 0.640389 | 3_4:-70732964 | Msa0518840:CDS |
| ACATCGAGGTTAAGTGTACG+TGG | 0.649453 | 3_4:-70732343 | Msa0518840:CDS |
| CCAGACAATCCAGATTGTAA+CGG | 0.653501 | 3_4:+70732229 | None:intergenic |
| ACTCGATGTCGAAGACCGAG+AGG | 0.696816 | 3_4:+70732261 | None:intergenic |
| CATCGAGGTTAAGTGTACGT+GGG | 0.728547 | 3_4:-70732342 | Msa0518840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATAGATATATAATATA+CGG | - | chr3_4:70731416-70731435 | Msa0518840:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_4:70732787-70732806 | Msa0518840:intron | 10.0% |
| !! | TTACATAGATATATAATATA+CGG | - | chr3_4:70731416-70731435 | Msa0518840:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_4:70732787-70732806 | Msa0518840:intron | 10.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_4:70731728-70731747 | Msa0518840:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_4:70732127-70732146 | None:intergenic | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_4:70731728-70731747 | Msa0518840:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_4:70732127-70732146 | None:intergenic | 15.0% |
| !! | GTTATACTATAAATTAACCT+TGG | + | chr3_4:70731145-70731164 | None:intergenic | 20.0% |
| !!! | GTATAACAAATACAAACTTT+TGG | - | chr3_4:70731158-70731177 | Msa0518840:intron | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_4:70732534-70732553 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_4:70732698-70732717 | Msa0518840:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_4:70732797-70732816 | Msa0518840:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_4:70732836-70732855 | Msa0518840:intron | 20.0% |
| !! | GTTATACTATAAATTAACCT+TGG | + | chr3_4:70731145-70731164 | None:intergenic | 20.0% |
| !!! | GTATAACAAATACAAACTTT+TGG | - | chr3_4:70731158-70731177 | Msa0518840:intron | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_4:70732534-70732553 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_4:70732698-70732717 | Msa0518840:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_4:70732797-70732816 | Msa0518840:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_4:70732836-70732855 | Msa0518840:intron | 20.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_4:70730941-70730960 | Msa0518840:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_4:70730942-70730961 | Msa0518840:CDS | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | + | chr3_4:70731109-70731128 | None:intergenic | 25.0% |
| ! | ACTATAAATTAACCTTGGTT+AGG | + | chr3_4:70731140-70731159 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_4:70731164-70731183 | Msa0518840:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_4:70731363-70731382 | Msa0518840:intron | 25.0% |
| !!! | AACCAGATTTGAGTTTATTT+TGG | - | chr3_4:70732580-70732599 | Msa0518840:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_4:70732661-70732680 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_4:70732861-70732880 | Msa0518840:intron | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_4:70732891-70732910 | Msa0518840:CDS | 25.0% |
| ! | GTAACAATTGACATTTCATA+TGG | + | chr3_4:70730940-70730959 | None:intergenic | 25.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_4:70730941-70730960 | Msa0518840:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_4:70730942-70730961 | Msa0518840:CDS | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | + | chr3_4:70731109-70731128 | None:intergenic | 25.0% |
| ! | ACTATAAATTAACCTTGGTT+AGG | + | chr3_4:70731140-70731159 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_4:70731164-70731183 | Msa0518840:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_4:70731363-70731382 | Msa0518840:intron | 25.0% |
| !!! | AACCAGATTTGAGTTTATTT+TGG | - | chr3_4:70732580-70732599 | Msa0518840:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_4:70732661-70732680 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_4:70732861-70732880 | Msa0518840:intron | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_4:70732891-70732910 | Msa0518840:CDS | 25.0% |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_4:70730968-70730987 | Msa0518840:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | + | chr3_4:70731099-70731118 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_4:70731302-70731321 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_4:70731393-70731412 | Msa0518840:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_4:70731574-70731593 | None:intergenic | 30.0% |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_4:70732013-70732032 | Msa0518840:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_4:70732229-70732248 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_4:70732351-70732370 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | - | chr3_4:70732469-70732488 | Msa0518840:intron | 30.0% |
| GACCAAAATAAACTCAAATC+TGG | + | chr3_4:70732585-70732604 | None:intergenic | 30.0% | |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_4:70732890-70732909 | Msa0518840:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_4:70732933-70732952 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_4:70732936-70732955 | Msa0518840:CDS | 30.0% | |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_4:70730968-70730987 | Msa0518840:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | + | chr3_4:70731099-70731118 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_4:70731302-70731321 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_4:70731393-70731412 | Msa0518840:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_4:70731574-70731593 | None:intergenic | 30.0% |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_4:70732013-70732032 | Msa0518840:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_4:70732229-70732248 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_4:70732351-70732370 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | - | chr3_4:70732469-70732488 | Msa0518840:intron | 30.0% |
| GACCAAAATAAACTCAAATC+TGG | + | chr3_4:70732585-70732604 | None:intergenic | 30.0% | |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_4:70732890-70732909 | Msa0518840:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_4:70732933-70732952 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_4:70732936-70732955 | Msa0518840:CDS | 30.0% | |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_4:70730967-70730986 | Msa0518840:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_4:70730969-70730988 | Msa0518840:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_4:70731038-70731057 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_4:70731135-70731154 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_4:70731259-70731278 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_4:70731283-70731302 | Msa0518840:intron | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_4:70731576-70731595 | Msa0518840:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_4:70731636-70731655 | Msa0518840:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_4:70731637-70731656 | Msa0518840:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_4:70731641-70731660 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_4:70731924-70731943 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_4:70731924-70731943 | Msa0518840:intron | 35.0% | |
| ! | AGAGTTGATTATAGCGAAAG+AGG | + | chr3_4:70732007-70732026 | None:intergenic | 35.0% |
| GCTATAATCAACTCTGTTAG+TGG | - | chr3_4:70732012-70732031 | Msa0518840:CDS | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_4:70732227-70732246 | Msa0518840:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_4:70732237-70732256 | Msa0518840:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_4:70732253-70732272 | Msa0518840:CDS | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_4:70732642-70732661 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_4:70732643-70732662 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_4:70732825-70732844 | None:intergenic | 35.0% | |
| ! | ATTGATGATACCATTGAAGC+CGG | - | chr3_4:70732963-70732982 | Msa0518840:CDS | 35.0% |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_4:70730967-70730986 | Msa0518840:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_4:70730969-70730988 | Msa0518840:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_4:70731038-70731057 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_4:70731135-70731154 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_4:70731259-70731278 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_4:70731283-70731302 | Msa0518840:intron | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_4:70731576-70731595 | Msa0518840:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_4:70731636-70731655 | Msa0518840:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_4:70731637-70731656 | Msa0518840:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_4:70731641-70731660 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_4:70731924-70731943 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_4:70731924-70731943 | Msa0518840:intron | 35.0% | |
| ! | AGAGTTGATTATAGCGAAAG+AGG | + | chr3_4:70732007-70732026 | None:intergenic | 35.0% |
| GCTATAATCAACTCTGTTAG+TGG | - | chr3_4:70732012-70732031 | Msa0518840:CDS | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_4:70732227-70732246 | Msa0518840:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_4:70732237-70732256 | Msa0518840:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_4:70732253-70732272 | Msa0518840:CDS | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_4:70732642-70732661 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_4:70732643-70732662 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_4:70732825-70732844 | None:intergenic | 35.0% | |
| ! | ATTGATGATACCATTGAAGC+CGG | - | chr3_4:70732963-70732982 | Msa0518840:CDS | 35.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_4:70731027-70731046 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | - | chr3_4:70731089-70731108 | Msa0518840:intron | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_4:70731507-70731526 | Msa0518840:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_4:70731508-70731527 | Msa0518840:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_4:70731520-70731539 | Msa0518840:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_4:70731534-70731553 | Msa0518840:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_4:70731548-70731567 | Msa0518840:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_4:70731562-70731581 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_4:70731563-70731582 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_4:70731563-70731582 | Msa0518840:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_4:70731642-70731661 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_4:70731657-70731676 | Msa0518840:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_4:70731681-70731700 | Msa0518840:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_4:70731695-70731714 | Msa0518840:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_4:70731707-70731726 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_4:70731928-70731947 | Msa0518840:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_4:70731948-70731967 | Msa0518840:intron | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_4:70732902-70732921 | Msa0518840:CDS | 40.0% | |
| ! | TTGATGATACCATTGAAGCC+GGG | - | chr3_4:70732964-70732983 | Msa0518840:CDS | 40.0% |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_4:70732997-70733016 | None:intergenic | 40.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_4:70731027-70731046 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | - | chr3_4:70731089-70731108 | Msa0518840:intron | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_4:70731507-70731526 | Msa0518840:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_4:70731508-70731527 | Msa0518840:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_4:70731520-70731539 | Msa0518840:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_4:70731534-70731553 | Msa0518840:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_4:70731548-70731567 | Msa0518840:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_4:70731562-70731581 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_4:70731563-70731582 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_4:70731563-70731582 | Msa0518840:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_4:70731642-70731661 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_4:70731657-70731676 | Msa0518840:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_4:70731681-70731700 | Msa0518840:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_4:70731695-70731714 | Msa0518840:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_4:70731707-70731726 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_4:70731928-70731947 | Msa0518840:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_4:70731948-70731967 | Msa0518840:intron | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_4:70732902-70732921 | Msa0518840:CDS | 40.0% | |
| ! | TTGATGATACCATTGAAGCC+GGG | - | chr3_4:70732964-70732983 | Msa0518840:CDS | 40.0% |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_4:70732997-70733016 | None:intergenic | 40.0% |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_4:70731332-70731351 | Msa0518840:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_4:70731519-70731538 | Msa0518840:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_4:70731590-70731609 | Msa0518840:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_4:70731591-70731610 | Msa0518840:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_4:70731704-70731723 | Msa0518840:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_4:70731931-70731950 | Msa0518840:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_4:70732903-70732922 | Msa0518840:CDS | 45.0% | |
| TCTTTGGATGGAATGCATCC+CGG | + | chr3_4:70732985-70733004 | None:intergenic | 45.0% | |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_4:70731332-70731351 | Msa0518840:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_4:70731519-70731538 | Msa0518840:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_4:70731590-70731609 | Msa0518840:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_4:70731591-70731610 | Msa0518840:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_4:70731704-70731723 | Msa0518840:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_4:70731931-70731950 | Msa0518840:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_4:70732903-70732922 | Msa0518840:CDS | 45.0% | |
| TCTTTGGATGGAATGCATCC+CGG | + | chr3_4:70732985-70733004 | None:intergenic | 45.0% | |
| !! | CATATTTATATATATTAAAA+AGG | + | chr3_4:70732042-70732061 | None:intergenic | 5.0% |
| !! | CATATTTATATATATTAAAA+AGG | + | chr3_4:70732042-70732061 | None:intergenic | 5.0% |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_4:70730974-70730993 | Msa0518840:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_4:70731057-70731076 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_4:70731058-70731077 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_4:70731125-70731144 | Msa0518840:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_4:70731514-70731533 | None:intergenic | 50.0% | |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_4:70730974-70730993 | Msa0518840:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_4:70731057-70731076 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_4:70731058-70731077 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_4:70731125-70731144 | Msa0518840:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_4:70731514-70731533 | None:intergenic | 50.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_4:70731601-70731620 | Msa0518840:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_4:70731675-70731694 | None:intergenic | 55.0% | |
| GGAATGCATCCCGGCTTCAA+TGG | + | chr3_4:70732976-70732995 | None:intergenic | 55.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_4:70731601-70731620 | Msa0518840:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_4:70731675-70731694 | None:intergenic | 55.0% | |
| GGAATGCATCCCGGCTTCAA+TGG | + | chr3_4:70732976-70732995 | None:intergenic | 55.0% | |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_4:70731607-70731626 | Msa0518840:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_4:70731608-70731627 | Msa0518840:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_4:70731609-70731628 | Msa0518840:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_4:70731610-70731629 | Msa0518840:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_4:70731622-70731641 | None:intergenic | 60.0% |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_4:70731607-70731626 | Msa0518840:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_4:70731608-70731627 | Msa0518840:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_4:70731609-70731628 | Msa0518840:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_4:70731610-70731629 | Msa0518840:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_4:70731622-70731641 | None:intergenic | 60.0% |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_4:70731611-70731630 | Msa0518840:intron | 65.0% | |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_4:70731611-70731630 | Msa0518840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 70730939 | 70733016 | 70730939 | ID=Msa0518840;Name=Msa0518840 |
| chr3_4 | mRNA | 70730939 | 70733016 | 70730939 | ID=Msa0518840-mRNA-1;Parent=Msa0518840;Name=Msa0518840-mRNA-1;_AED=0.21;_eAED=0.39;_QI=7|0|0|0.83|0.4|0.33|6|0|212 |
| chr3_4 | exon | 70732864 | 70733016 | 70732864 | ID=Msa0518840-mRNA-1:exon:19349;Parent=Msa0518840-mRNA-1 |
| chr3_4 | exon | 70732602 | 70732724 | 70732602 | ID=Msa0518840-mRNA-1:exon:19348;Parent=Msa0518840-mRNA-1 |
| chr3_4 | exon | 70732426 | 70732433 | 70732426 | ID=Msa0518840-mRNA-1:exon:19347;Parent=Msa0518840-mRNA-1 |
| chr3_4 | exon | 70732230 | 70732373 | 70732230 | ID=Msa0518840-mRNA-1:exon:19346;Parent=Msa0518840-mRNA-1 |
| chr3_4 | exon | 70732003 | 70732083 | 70732003 | ID=Msa0518840-mRNA-1:exon:19345;Parent=Msa0518840-mRNA-1 |
| chr3_4 | exon | 70730939 | 70731072 | 70730939 | ID=Msa0518840-mRNA-1:exon:19344;Parent=Msa0518840-mRNA-1 |
| chr3_4 | five_prime_UTR | 70733010 | 70733016 | 70733010 | ID=Msa0518840-mRNA-1:five_prime_utr;Parent=Msa0518840-mRNA-1 |
| chr3_4 | CDS | 70732864 | 70733009 | 70732864 | ID=Msa0518840-mRNA-1:cds;Parent=Msa0518840-mRNA-1 |
| chr3_4 | CDS | 70732602 | 70732724 | 70732602 | ID=Msa0518840-mRNA-1:cds;Parent=Msa0518840-mRNA-1 |
| chr3_4 | CDS | 70732426 | 70732433 | 70732426 | ID=Msa0518840-mRNA-1:cds;Parent=Msa0518840-mRNA-1 |
| chr3_4 | CDS | 70732230 | 70732373 | 70732230 | ID=Msa0518840-mRNA-1:cds;Parent=Msa0518840-mRNA-1 |
| chr3_4 | CDS | 70732003 | 70732083 | 70732003 | ID=Msa0518840-mRNA-1:cds;Parent=Msa0518840-mRNA-1 |
| chr3_4 | CDS | 70730939 | 70731072 | 70730939 | ID=Msa0518840-mRNA-1:cds;Parent=Msa0518840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
