Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474420 | AES96022.1 | 75.956 | 183 | 29 | 1 | 19 | 186 | 30 | 212 | 1.98e-79 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474420 | sp|P93024|ARFE_ARATH | 46.897 | 145 | 58 | 3 | 3 | 128 | 243 | 387 | 2.74e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474420 | G7JXN7 | 75.956 | 183 | 29 | 1 | 19 | 186 | 30 | 212 | 9.48e-80 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175840 | Msa0474420 | 0.802413 | 5.677517e-49 | -8.615850e-47 |
| Msa0428070 | Msa0474420 | 0.802924 | 4.453746e-49 | -8.615850e-47 |
| Msa0474420 | Msa0518840 | 0.993214 | 3.269107e-198 | -8.615850e-47 |
| Msa0474420 | Msa1237350 | 0.806483 | 8.047337e-50 | -8.615850e-47 |
| Msa0474420 | Msa1407600 | 0.803670 | 3.120684e-49 | -8.615850e-47 |
| Msa0474420 | Msa1424760 | 0.801156 | 1.028255e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474420 | MtrunA17_Chr1g0156321 | 44.444 | 171 | 71 | 4 | 3 | 149 | 231 | 401 | 2.95e-29 | 116 |
| Msa0474420 | MtrunA17_Chr4g0070181 | 42.759 | 145 | 63 | 5 | 3 | 128 | 211 | 354 | 5.93e-19 | 86.3 |
| Msa0474420 | MtrunA17_Chr2g0285461 | 36.170 | 141 | 71 | 3 | 7 | 128 | 216 | 356 | 3.64e-18 | 84.0 |
| Msa0474420 | MtrunA17_Chr3g0109391 | 47.368 | 95 | 46 | 1 | 7 | 97 | 219 | 313 | 9.80e-18 | 82.4 |
| Msa0474420 | MtrunA17_Chr5g0433301 | 36.879 | 141 | 70 | 3 | 7 | 128 | 217 | 357 | 1.78e-16 | 79.0 |
| Msa0474420 | MtrunA17_Chr2g0301251 | 37.931 | 145 | 70 | 5 | 3 | 128 | 211 | 354 | 1.02e-15 | 76.6 |
| Msa0474420 | MtrunA17_Chr8g0376771 | 43.158 | 95 | 50 | 1 | 7 | 97 | 215 | 309 | 2.63e-15 | 75.5 |
| Msa0474420 | MtrunA17_Chr8g0389081 | 41.379 | 145 | 66 | 4 | 3 | 128 | 221 | 365 | 6.59e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474420 | AT1G19850.1 | 46.897 | 145 | 58 | 3 | 3 | 128 | 243 | 387 | 2.79e-28 | 113 |
| Msa0474420 | AT1G19850.2 | 46.897 | 145 | 58 | 3 | 3 | 128 | 232 | 376 | 2.83e-28 | 113 |
| Msa0474420 | AT1G19220.1 | 41.379 | 145 | 65 | 5 | 3 | 128 | 211 | 354 | 3.28e-17 | 81.3 |
| Msa0474420 | AT1G30330.3 | 35.461 | 141 | 72 | 3 | 7 | 128 | 218 | 358 | 6.68e-17 | 80.5 |
| Msa0474420 | AT1G30330.2 | 35.461 | 141 | 72 | 3 | 7 | 128 | 218 | 358 | 6.68e-17 | 80.5 |
| Msa0474420 | AT1G30330.1 | 35.461 | 141 | 72 | 3 | 7 | 128 | 216 | 356 | 7.13e-17 | 80.5 |
| Msa0474420 | AT5G37020.1 | 43.434 | 99 | 52 | 1 | 3 | 97 | 211 | 309 | 9.93e-16 | 77.0 |
| Msa0474420 | AT5G20730.2 | 38.621 | 145 | 69 | 5 | 3 | 128 | 212 | 355 | 9.98e-16 | 77.0 |
| Msa0474420 | AT5G37020.2 | 43.434 | 99 | 52 | 1 | 3 | 97 | 211 | 309 | 1.02e-15 | 77.0 |
| Msa0474420 | AT5G37020.3 | 43.434 | 99 | 52 | 1 | 3 | 97 | 116 | 214 | 1.07e-15 | 77.0 |
| Msa0474420 | AT5G20730.3 | 38.356 | 146 | 69 | 6 | 3 | 128 | 212 | 356 | 3.13e-14 | 72.8 |
| Msa0474420 | AT5G20730.1 | 38.356 | 146 | 69 | 6 | 3 | 128 | 212 | 356 | 3.64e-14 | 72.4 |
| Msa0474420 | AT5G60450.2 | 33.333 | 177 | 92 | 7 | 6 | 158 | 241 | 415 | 3.44e-12 | 66.6 |
| Msa0474420 | AT5G60450.1 | 32.778 | 180 | 95 | 7 | 3 | 158 | 262 | 439 | 3.70e-12 | 66.2 |
Find 52 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTACTCTTGTGTTTA+TGG | 0.105939 | 3_3:-77326022 | Msa0474420:CDS |
| TTAACCTTTCTGCAGCGATA+TGG | 0.289310 | 3_3:-77327377 | Msa0474420:intron |
| ATTCTTACTCTTGTGTTTAT+GGG | 0.295461 | 3_3:-77326021 | Msa0474420:CDS |
| GTCCCAAGAACAAACTCTAT+TGG | 0.319310 | 3_3:+77327245 | None:intergenic |
| AACCCAATAGAGTTTGTTCT+TGG | 0.329589 | 3_3:-77327248 | Msa0474420:CDS |
| TCCCAAGAACAAACTCTATT+GGG | 0.339053 | 3_3:+77327246 | None:intergenic |
| AGAAATCACAATTGCTAGTT+GGG | 0.361412 | 3_3:-77327921 | Msa0474420:CDS |
| CTTCGACATCGAGTTCTAAA+AGG | 0.371968 | 3_3:-77327203 | Msa0474420:CDS |
| TCTAAAAGGCCGTTACAATC+TGG | 0.375045 | 3_3:-77327189 | Msa0474420:CDS |
| ACGTGGGACAAGCCAGGTTG+TGG | 0.388913 | 3_3:-77327277 | Msa0474420:CDS |
| AGCAGCAACAAGCGCATCAA+TGG | 0.405726 | 3_3:+77327834 | None:intergenic |
| GCAGCAACAAGCGCATCAAT+GGG | 0.418539 | 3_3:+77327835 | None:intergenic |
| AGGTGGTAGTACTCTCAAAA+TGG | 0.420695 | 3_3:-77326936 | Msa0474420:CDS |
| TAACCTTTCTGCAGCGATAT+GGG | 0.426316 | 3_3:-77327376 | Msa0474420:intron |
| TTTGTCTCTCAATTGTCCAT+TGG | 0.440203 | 3_3:-77327601 | Msa0474420:CDS |
| CCGTTACAATCTGGATTGTC+TGG | 0.443879 | 3_3:-77327180 | Msa0474420:intron |
| TACCTTGGATAGTATACAAC+AGG | 0.450471 | 3_3:+77327793 | None:intergenic |
| CGTGGGACAAGCCAGGTTGT+GGG | 0.450757 | 3_3:-77327276 | Msa0474420:CDS |
| GTGTTTATGGGATGTCTCAC+GGG | 0.456735 | 3_3:-77326009 | Msa0474420:CDS |
| CACAATTGCTAGTTGGGGTC+AGG | 0.457568 | 3_3:-77327915 | Msa0474420:CDS |
| GATGGTTACTTGATAGTCTA+CGG | 0.460635 | 3_3:+77326273 | None:intergenic |
| GAGAAATCACAATTGCTAGT+TGG | 0.465725 | 3_3:-77327922 | Msa0474420:CDS |
| TCTCAACTACACTACTATCT+TGG | 0.467867 | 3_3:+77326963 | None:intergenic |
| TGTGTTTATGGGATGTCTCA+CGG | 0.468124 | 3_3:-77326010 | Msa0474420:CDS |
| ACCCAATAGAGTTTGTTCTT+GGG | 0.481411 | 3_3:-77327247 | Msa0474420:CDS |
| GGAATGCATCCCGGCTTCAA+TGG | 0.490579 | 3_3:+77325939 | None:intergenic |
| AGATAGTAGTGTAGTTGAGA+TGG | 0.502287 | 3_3:-77326960 | Msa0474420:CDS |
| TAAGATGATGACTTCATCAA+TGG | 0.510939 | 3_3:+77325982 | None:intergenic |
| ATTGATGATACCATTGAAGC+CGG | 0.520511 | 3_3:-77325949 | Msa0474420:CDS |
| TCTTTGGATGGAATGCATCC+CGG | 0.523155 | 3_3:+77325930 | None:intergenic |
| AGTGTAGTTGAGATGGAAGG+TGG | 0.537688 | 3_3:-77326953 | Msa0474420:CDS |
| ATGGTTACTTGATAGTCTAC+GGG | 0.539444 | 3_3:+77326274 | None:intergenic |
| AGTAGTGTAGTTGAGATGGA+AGG | 0.544496 | 3_3:-77326956 | Msa0474420:CDS |
| ATGAAGTCATCATCTTATGA+AGG | 0.553019 | 3_3:-77325976 | Msa0474420:CDS |
| TTCCTGTTGTATACTATCCA+AGG | 0.555942 | 3_3:-77327795 | Msa0474420:intron |
| ATGAAATGTCAATTGTTACA+AGG | 0.556474 | 3_3:-77327948 | Msa0474420:exon |
| TGGGACAAGCCAGGTTGTGG+GGG | 0.556761 | 3_3:-77327274 | Msa0474420:CDS |
| AAGTGTACGTGGGACAAGCC+AGG | 0.556937 | 3_3:-77327283 | Msa0474420:CDS |
| GCATTGTTGTATGTTGAAAG+TGG | 0.558663 | 3_3:+77327628 | None:intergenic |
| TTAGCAGAAAGGACTGATGA+TGG | 0.562029 | 3_3:+77327865 | None:intergenic |
| TGGGCATATTATTAGCAGAA+AGG | 0.573682 | 3_3:+77327854 | None:intergenic |
| CAAAAGCATTTGATACGCGC+TGG | 0.577963 | 3_3:-77327552 | Msa0474420:intron |
| GTGGGACAAGCCAGGTTGTG+GGG | 0.605722 | 3_3:-77327275 | Msa0474420:CDS |
| TGAAATGTCAATTGTTACAA+GGG | 0.606701 | 3_3:-77327947 | Msa0474420:exon |
| CATATCATATCTCAATCCAA+TGG | 0.607038 | 3_3:+77327585 | None:intergenic |
| GGGACAAGCCAGGTTGTGGG+GGG | 0.611452 | 3_3:-77327273 | Msa0474420:CDS |
| TTGATGATACCATTGAAGCC+GGG | 0.618042 | 3_3:-77325948 | Msa0474420:CDS |
| GAAATCACAATTGCTAGTTG+GGG | 0.640389 | 3_3:-77327920 | Msa0474420:CDS |
| ACATCGAGGTTAAGTGTACG+TGG | 0.649453 | 3_3:-77327294 | Msa0474420:CDS |
| CCAGACAATCCAGATTGTAA+CGG | 0.653501 | 3_3:+77327180 | None:intergenic |
| ACTCGATGTCGAAGACCGAG+AGG | 0.696816 | 3_3:+77327212 | None:intergenic |
| CATCGAGGTTAAGTGTACGT+GGG | 0.728547 | 3_3:-77327293 | Msa0474420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATAGATATATAATATA+CGG | - | chr3_3:77326400-77326419 | Msa0474420:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_3:77327743-77327762 | Msa0474420:intron | 10.0% |
| !! | TTACATAGATATATAATATA+CGG | - | chr3_3:77326400-77326419 | Msa0474420:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_3:77327743-77327762 | Msa0474420:intron | 10.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_3:77326712-77326731 | Msa0474420:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_3:77327111-77327130 | None:intergenic | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_3:77326712-77326731 | Msa0474420:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_3:77327111-77327130 | None:intergenic | 15.0% |
| !! | GTTATACTATAAATTAACCT+TGG | + | chr3_3:77326129-77326148 | None:intergenic | 20.0% |
| !!! | GTATAACAAATACAAACTTT+TGG | - | chr3_3:77326142-77326161 | Msa0474420:intron | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_3:77327488-77327507 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_3:77327653-77327672 | Msa0474420:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_3:77327753-77327772 | Msa0474420:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_3:77327792-77327811 | Msa0474420:intron | 20.0% |
| !! | GTTATACTATAAATTAACCT+TGG | + | chr3_3:77326129-77326148 | None:intergenic | 20.0% |
| !!! | GTATAACAAATACAAACTTT+TGG | - | chr3_3:77326142-77326161 | Msa0474420:intron | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_3:77327488-77327507 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_3:77327653-77327672 | Msa0474420:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_3:77327753-77327772 | Msa0474420:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_3:77327792-77327811 | Msa0474420:intron | 20.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_3:77325920-77325939 | Msa0474420:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_3:77325921-77325940 | Msa0474420:CDS | 25.0% |
| ! | AGAGCAAATTAAATATACCT+TGG | + | chr3_3:77326093-77326112 | None:intergenic | 25.0% |
| ! | ACTATAAATTAACCTTGGTT+AGG | + | chr3_3:77326124-77326143 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_3:77326148-77326167 | Msa0474420:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_3:77326347-77326366 | Msa0474420:intron | 25.0% |
| !!! | AACCAGATTTGAGTTTATTT+TGG | - | chr3_3:77327534-77327553 | Msa0474420:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_3:77327616-77327635 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_3:77327817-77327836 | Msa0474420:CDS | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_3:77327847-77327866 | Msa0474420:CDS | 25.0% |
| ! | GTAACAATTGACATTTCATA+TGG | + | chr3_3:77325919-77325938 | None:intergenic | 25.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_3:77325920-77325939 | Msa0474420:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_3:77325921-77325940 | Msa0474420:CDS | 25.0% |
| ! | AGAGCAAATTAAATATACCT+TGG | + | chr3_3:77326093-77326112 | None:intergenic | 25.0% |
| ! | ACTATAAATTAACCTTGGTT+AGG | + | chr3_3:77326124-77326143 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_3:77326148-77326167 | Msa0474420:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_3:77326347-77326366 | Msa0474420:intron | 25.0% |
| !!! | AACCAGATTTGAGTTTATTT+TGG | - | chr3_3:77327534-77327553 | Msa0474420:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_3:77327616-77327635 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_3:77327817-77327836 | Msa0474420:CDS | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_3:77327847-77327866 | Msa0474420:CDS | 25.0% |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_3:77325947-77325966 | Msa0474420:CDS | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_3:77326286-77326305 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_3:77326377-77326396 | Msa0474420:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_3:77326558-77326577 | None:intergenic | 30.0% |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_3:77326997-77327016 | Msa0474420:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_3:77327213-77327232 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_3:77327335-77327354 | None:intergenic | 30.0% | |
| !!! | GAGAGATATGTTTTTTTGTG+AGG | - | chr3_3:77327423-77327442 | Msa0474420:intron | 30.0% |
| GACCAAAATAAACTCAAATC+TGG | + | chr3_3:77327539-77327558 | None:intergenic | 30.0% | |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_3:77327846-77327865 | Msa0474420:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_3:77327889-77327908 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_3:77327892-77327911 | Msa0474420:CDS | 30.0% | |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_3:77325947-77325966 | Msa0474420:CDS | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_3:77326286-77326305 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_3:77326377-77326396 | Msa0474420:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_3:77326558-77326577 | None:intergenic | 30.0% |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_3:77326997-77327016 | Msa0474420:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_3:77327213-77327232 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_3:77327335-77327354 | None:intergenic | 30.0% | |
| !!! | GAGAGATATGTTTTTTTGTG+AGG | - | chr3_3:77327423-77327442 | Msa0474420:intron | 30.0% |
| GACCAAAATAAACTCAAATC+TGG | + | chr3_3:77327539-77327558 | None:intergenic | 30.0% | |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_3:77327846-77327865 | Msa0474420:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_3:77327889-77327908 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_3:77327892-77327911 | Msa0474420:CDS | 30.0% | |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_3:77325946-77325965 | Msa0474420:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_3:77325948-77325967 | Msa0474420:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_3:77326017-77326036 | None:intergenic | 35.0% | |
| TTCCTGTTGTATACTATCCA+AGG | - | chr3_3:77326073-77326092 | Msa0474420:intron | 35.0% | |
| TACCTTGGATAGTATACAAC+AGG | + | chr3_3:77326078-77326097 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_3:77326119-77326138 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_3:77326243-77326262 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_3:77326267-77326286 | Msa0474420:CDS | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_3:77326560-77326579 | Msa0474420:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_3:77326620-77326639 | Msa0474420:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_3:77326621-77326640 | Msa0474420:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_3:77326625-77326644 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_3:77326908-77326927 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_3:77326908-77326927 | Msa0474420:intron | 35.0% | |
| ! | AGAGTTGATTATAGCGAAAG+AGG | + | chr3_3:77326991-77327010 | None:intergenic | 35.0% |
| GCTATAATCAACTCTGTTAG+TGG | - | chr3_3:77326996-77327015 | Msa0474420:CDS | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_3:77327211-77327230 | Msa0474420:CDS | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_3:77327221-77327240 | Msa0474420:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_3:77327237-77327256 | Msa0474420:CDS | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_3:77327597-77327616 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_3:77327598-77327617 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_3:77327781-77327800 | None:intergenic | 35.0% | |
| ! | ATTGATGATACCATTGAAGC+CGG | - | chr3_3:77327919-77327938 | Msa0474420:CDS | 35.0% |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_3:77325946-77325965 | Msa0474420:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_3:77325948-77325967 | Msa0474420:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_3:77326017-77326036 | None:intergenic | 35.0% | |
| TTCCTGTTGTATACTATCCA+AGG | - | chr3_3:77326073-77326092 | Msa0474420:intron | 35.0% | |
| TACCTTGGATAGTATACAAC+AGG | + | chr3_3:77326078-77326097 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_3:77326119-77326138 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_3:77326243-77326262 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_3:77326267-77326286 | Msa0474420:CDS | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_3:77326560-77326579 | Msa0474420:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_3:77326620-77326639 | Msa0474420:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_3:77326621-77326640 | Msa0474420:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_3:77326625-77326644 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_3:77326908-77326927 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_3:77326908-77326927 | Msa0474420:intron | 35.0% | |
| ! | AGAGTTGATTATAGCGAAAG+AGG | + | chr3_3:77326991-77327010 | None:intergenic | 35.0% |
| GCTATAATCAACTCTGTTAG+TGG | - | chr3_3:77326996-77327015 | Msa0474420:CDS | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_3:77327211-77327230 | Msa0474420:CDS | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_3:77327221-77327240 | Msa0474420:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_3:77327237-77327256 | Msa0474420:CDS | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_3:77327597-77327616 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_3:77327598-77327617 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_3:77327781-77327800 | None:intergenic | 35.0% | |
| ! | ATTGATGATACCATTGAAGC+CGG | - | chr3_3:77327919-77327938 | Msa0474420:CDS | 35.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_3:77326006-77326025 | None:intergenic | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_3:77326491-77326510 | Msa0474420:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_3:77326492-77326511 | Msa0474420:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_3:77326504-77326523 | Msa0474420:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_3:77326518-77326537 | Msa0474420:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_3:77326532-77326551 | Msa0474420:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_3:77326546-77326565 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_3:77326547-77326566 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_3:77326547-77326566 | Msa0474420:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_3:77326626-77326645 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_3:77326641-77326660 | Msa0474420:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_3:77326665-77326684 | Msa0474420:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_3:77326679-77326698 | Msa0474420:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_3:77326691-77326710 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_3:77326912-77326931 | Msa0474420:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_3:77326932-77326951 | Msa0474420:CDS | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_3:77327858-77327877 | Msa0474420:CDS | 40.0% | |
| ! | TTGATGATACCATTGAAGCC+GGG | - | chr3_3:77327920-77327939 | Msa0474420:CDS | 40.0% |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_3:77327953-77327972 | None:intergenic | 40.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_3:77326006-77326025 | None:intergenic | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_3:77326491-77326510 | Msa0474420:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_3:77326492-77326511 | Msa0474420:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_3:77326504-77326523 | Msa0474420:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_3:77326518-77326537 | Msa0474420:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_3:77326532-77326551 | Msa0474420:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_3:77326546-77326565 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_3:77326547-77326566 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_3:77326547-77326566 | Msa0474420:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_3:77326626-77326645 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_3:77326641-77326660 | Msa0474420:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_3:77326665-77326684 | Msa0474420:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_3:77326679-77326698 | Msa0474420:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_3:77326691-77326710 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_3:77326912-77326931 | Msa0474420:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_3:77326932-77326951 | Msa0474420:CDS | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_3:77327858-77327877 | Msa0474420:CDS | 40.0% | |
| ! | TTGATGATACCATTGAAGCC+GGG | - | chr3_3:77327920-77327939 | Msa0474420:CDS | 40.0% |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_3:77327953-77327972 | None:intergenic | 40.0% |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_3:77326316-77326335 | Msa0474420:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_3:77326503-77326522 | Msa0474420:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_3:77326574-77326593 | Msa0474420:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_3:77326575-77326594 | Msa0474420:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_3:77326688-77326707 | Msa0474420:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_3:77326915-77326934 | Msa0474420:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_3:77327859-77327878 | Msa0474420:CDS | 45.0% | |
| TCTTTGGATGGAATGCATCC+CGG | + | chr3_3:77327941-77327960 | None:intergenic | 45.0% | |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_3:77326316-77326335 | Msa0474420:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_3:77326503-77326522 | Msa0474420:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_3:77326574-77326593 | Msa0474420:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_3:77326575-77326594 | Msa0474420:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_3:77326688-77326707 | Msa0474420:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_3:77326915-77326934 | Msa0474420:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_3:77327859-77327878 | Msa0474420:CDS | 45.0% | |
| TCTTTGGATGGAATGCATCC+CGG | + | chr3_3:77327941-77327960 | None:intergenic | 45.0% | |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_3:77325953-77325972 | Msa0474420:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_3:77326036-77326055 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_3:77326037-77326056 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_3:77326109-77326128 | Msa0474420:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_3:77326498-77326517 | None:intergenic | 50.0% | |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_3:77325953-77325972 | Msa0474420:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_3:77326036-77326055 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_3:77326037-77326056 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_3:77326109-77326128 | Msa0474420:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_3:77326498-77326517 | None:intergenic | 50.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_3:77326585-77326604 | Msa0474420:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_3:77326659-77326678 | None:intergenic | 55.0% | |
| GGAATGCATCCCGGCTTCAA+TGG | + | chr3_3:77327932-77327951 | None:intergenic | 55.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_3:77326585-77326604 | Msa0474420:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_3:77326659-77326678 | None:intergenic | 55.0% | |
| GGAATGCATCCCGGCTTCAA+TGG | + | chr3_3:77327932-77327951 | None:intergenic | 55.0% | |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_3:77326591-77326610 | Msa0474420:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_3:77326592-77326611 | Msa0474420:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_3:77326593-77326612 | Msa0474420:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_3:77326594-77326613 | Msa0474420:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_3:77326606-77326625 | None:intergenic | 60.0% |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_3:77326591-77326610 | Msa0474420:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_3:77326592-77326611 | Msa0474420:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_3:77326593-77326612 | Msa0474420:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_3:77326594-77326613 | Msa0474420:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_3:77326606-77326625 | None:intergenic | 60.0% |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_3:77326595-77326614 | Msa0474420:intron | 65.0% | |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_3:77326595-77326614 | Msa0474420:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 77325918 | 77327972 | 77325918 | ID=Msa0474420;Name=Msa0474420 |
| chr3_3 | mRNA | 77325918 | 77327972 | 77325918 | ID=Msa0474420-mRNA-1;Parent=Msa0474420;Name=Msa0474420-mRNA-1;_AED=0.27;_eAED=0.41;_QI=7|0|0|0.62|0.28|0.37|8|0|258 |
| chr3_3 | exon | 77327796 | 77327972 | 77327796 | ID=Msa0474420-mRNA-1:exon:20644;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77327553 | 77327675 | 77327553 | ID=Msa0474420-mRNA-1:exon:20643;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77327377 | 77327384 | 77327377 | ID=Msa0474420-mRNA-1:exon:20642;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77327181 | 77327324 | 77327181 | ID=Msa0474420-mRNA-1:exon:20641;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77326923 | 77327034 | 77326923 | ID=Msa0474420-mRNA-1:exon:20640;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77326241 | 77326316 | 77326241 | ID=Msa0474420-mRNA-1:exon:20639;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77326216 | 77326222 | 77326216 | ID=Msa0474420-mRNA-1:exon:20638;Parent=Msa0474420-mRNA-1 |
| chr3_3 | exon | 77325918 | 77326051 | 77325918 | ID=Msa0474420-mRNA-1:exon:20637;Parent=Msa0474420-mRNA-1 |
| chr3_3 | five_prime_UTR | 77327966 | 77327972 | 77327966 | ID=Msa0474420-mRNA-1:five_prime_utr;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77327796 | 77327965 | 77327796 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77327553 | 77327675 | 77327553 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77327377 | 77327384 | 77327377 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77327181 | 77327324 | 77327181 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77326923 | 77327034 | 77326923 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77326241 | 77326316 | 77326241 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77326216 | 77326222 | 77326216 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| chr3_3 | CDS | 77325918 | 77326051 | 77325918 | ID=Msa0474420-mRNA-1:cds;Parent=Msa0474420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
