Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518940 | XP_003602730.1 | 79.422 | 588 | 14 | 4 | 1 | 484 | 1 | 585 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518940 | sp|Q8VZG7|TSN1_ARATH | 56.757 | 592 | 137 | 11 | 3 | 484 | 2 | 584 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518940 | G7J2R6 | 79.422 | 588 | 14 | 4 | 1 | 484 | 1 | 585 | 0.0 | 894 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0518940 | Msa0518950 | 0.826266 | 2.981885e-54 | -8.615850e-47 |
| Msa0518940 | Msa0518960 | 0.801047 | 1.082484e-48 | -8.615850e-47 |
| Msa0518940 | Msa0518970 | 0.931793 | 2.232385e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518940 | MtrunA17_Chr3g0131421 | 79.422 | 588 | 14 | 4 | 1 | 484 | 1 | 585 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0518940 | AT5G07350.2 | 56.757 | 592 | 137 | 11 | 3 | 484 | 2 | 584 | 0.0 | 599 |
| Msa0518940 | AT5G07350.1 | 56.757 | 592 | 137 | 11 | 3 | 484 | 2 | 584 | 0.0 | 599 |
| Msa0518940 | AT5G61780.1 | 57.770 | 592 | 129 | 11 | 1 | 484 | 1 | 579 | 0.0 | 593 |
Find 142 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTCTTTGGCTTTCT+TGG | 0.159486 | 3_4:-70860458 | None:intergenic |
| GCTGCAGCACGTGCCATTTC+TGG | 0.184079 | 3_4:+70860269 | Msa0518940:CDS |
| AGAAAACCAGGTTAAGAATT+TGG | 0.184322 | 3_4:+70859549 | Msa0518940:CDS |
| AAGTATTAGGTGTCCGAAAA+TGG | 0.185013 | 3_4:+70859811 | Msa0518940:CDS |
| GATTCCAGAGTAATGGATTT+TGG | 0.202686 | 3_4:+70860065 | Msa0518940:CDS |
| TTACCTTTCCAGTAAAATTT+TGG | 0.220966 | 3_4:-70859616 | None:intergenic |
| TGAACTTATCCACACCTTCT+AGG | 0.236811 | 3_4:-70858560 | None:intergenic |
| TCAGGTACAACTACACTTTC+AGG | 0.299564 | 3_4:-70858344 | None:intergenic |
| CAGCTCTCCTTCCCATTTGT+GGG | 0.313198 | 3_4:-70858319 | None:intergenic |
| AAGGTGAAGGCAGTTCCTTC+AGG | 0.315498 | 3_4:+70856303 | Msa0518940:CDS |
| CAGGAAAGGCAAGAAGTCTT+TGG | 0.324696 | 3_4:-70860467 | None:intergenic |
| GGGTTAACCTTTCAAGTATT+AGG | 0.329701 | 3_4:+70859798 | Msa0518940:CDS |
| GCAGCTCTCCTTCCCATTTG+TGG | 0.335395 | 3_4:-70858320 | None:intergenic |
| AATGTTGCTGAATTGATAAT+TGG | 0.341069 | 3_4:+70860173 | Msa0518940:CDS |
| TTGATAATTGGACGTGGCTT+TGG | 0.344884 | 3_4:+70860185 | Msa0518940:CDS |
| ATGTACAAATGGAATATTCT+AGG | 0.365595 | 3_4:+70859997 | Msa0518940:CDS |
| GGAACCTAGAGCTCCCCTTT+TGG | 0.373879 | 3_4:+70858403 | Msa0518940:CDS |
| CAAGAACTCCTTTGCTTCAC+GGG | 0.375410 | 3_4:-70859870 | None:intergenic |
| CTAATCAAAATTACCAATCT+AGG | 0.382663 | 3_4:-70856414 | None:intergenic |
| GATAAGTTCAGCAATTTGAT+TGG | 0.387009 | 3_4:+70858573 | Msa0518940:CDS |
| CAGCTTTCCCAGAGGACAAT+AGG | 0.391344 | 3_4:-70860097 | None:intergenic |
| GTCTTTGGCTTTCTTGGCTG+AGG | 0.395912 | 3_4:-70860452 | None:intergenic |
| GATCCCTTTCCTTCCAGAAA+TGG | 0.396452 | 3_4:-70860282 | None:intergenic |
| AGGGAACTCAGCATGGTATA+AGG | 0.397205 | 3_4:+70856278 | Msa0518940:CDS |
| TTGTTAGGCACTTGTTGAGC+AGG | 0.408436 | 3_4:+70858143 | Msa0518940:intron |
| TGGTGAATCAGCAAAGGATT+TGG | 0.411988 | 3_4:+70858614 | Msa0518940:CDS |
| TTTATGCCAGGCCCCACAAA+TGG | 0.413309 | 3_4:+70858307 | Msa0518940:intron |
| TAGCAGGAACAGCGGGTGAC+GGG | 0.418763 | 3_4:-70860133 | None:intergenic |
| GTTCCTGCTAGTCAGCAAAC+TGG | 0.419562 | 3_4:+70860146 | Msa0518940:CDS |
| GTCGTTGATTGCTCCTAGAT+TGG | 0.421010 | 3_4:+70856401 | Msa0518940:CDS |
| TCCTTTGCTGATTCACCATC+GGG | 0.422335 | 3_4:-70858609 | None:intergenic |
| GCTTCACGGGCATAGGGAGC+TGG | 0.427681 | 3_4:-70859857 | None:intergenic |
| TCTTGAGAACACGCCTCATC+GGG | 0.449684 | 3_4:+70859888 | Msa0518940:CDS |
| CTCAGGAAGAACACCAAGCT+TGG | 0.452082 | 3_4:-70856361 | None:intergenic |
| ATGGAATATTCTAGGAAAGT+TGG | 0.452719 | 3_4:+70860005 | Msa0518940:CDS |
| ACTTGGACAAACTGAAACTC+CGG | 0.463648 | 3_4:-70858201 | None:intergenic |
| TCAAGAACTCCTTTGCTTCA+CGG | 0.463651 | 3_4:-70859871 | None:intergenic |
| ATAAGTTCAGCAATTTGATT+GGG | 0.464289 | 3_4:+70858574 | Msa0518940:CDS |
| CTGGAGGATCCTTGGCAGAA+TGG | 0.470945 | 3_4:-70860304 | None:intergenic |
| ATGCATCACTGGAGGATCCT+TGG | 0.472624 | 3_4:-70860312 | None:intergenic |
| AACCCAGTTTGCTGACTAGC+AGG | 0.472981 | 3_4:-70860149 | None:intergenic |
| AGTATTAGGTGTCCGAAAAT+GGG | 0.473185 | 3_4:+70859812 | Msa0518940:CDS |
| CGCTCCAAAAGGGGAGCTCT+AGG | 0.479345 | 3_4:-70858407 | None:intergenic |
| AATTTAGCATCCGCTCCAAA+AGG | 0.488337 | 3_4:-70858418 | None:intergenic |
| TCCTTTGCTTCACGGGCATA+GGG | 0.488852 | 3_4:-70859863 | None:intergenic |
| AGAATGGCAGCAACAGCGGC+AGG | 0.489749 | 3_4:+70856258 | None:intergenic |
| ATTTAGCATCCGCTCCAAAA+GGG | 0.492221 | 3_4:-70858417 | None:intergenic |
| GTTCATGTAGGTTAGAGTGC+AGG | 0.492702 | 3_4:+70856943 | Msa0518940:intron |
| CGTGGGGACATCTCCATTAG+TGG | 0.497347 | 3_4:-70858381 | None:intergenic |
| CTCCTTTGCTTCACGGGCAT+AGG | 0.498760 | 3_4:-70859864 | None:intergenic |
| GCCTTCGAATTTGAAGTTGG+TGG | 0.502548 | 3_4:-70859584 | None:intergenic |
| GAACTCTTCTGCTTCAATGC+AGG | 0.502705 | 3_4:-70860486 | None:intergenic |
| TTCTTGAGAACACGCCTCAT+CGG | 0.504580 | 3_4:+70859887 | Msa0518940:CDS |
| GTTTGTCCAAATTCTTAACC+TGG | 0.506774 | 3_4:-70859555 | None:intergenic |
| ATCCTTTGCTGATTCACCAT+CGG | 0.507089 | 3_4:-70858610 | None:intergenic |
| GTAACGGTTGATACCACTAA+TGG | 0.507611 | 3_4:+70858368 | Msa0518940:CDS |
| TTCCTGCTAGTCAGCAAACT+GGG | 0.507686 | 3_4:+70860147 | Msa0518940:CDS |
| GATAAAGTGATTGATTTCTC+AGG | 0.508537 | 3_4:-70856378 | None:intergenic |
| TCTCTACTTTCCCAAGCAAA+TGG | 0.510565 | 3_4:-70856573 | None:intergenic |
| AGAGTGCAGGGGCAGCAGAA+AGG | 0.513323 | 3_4:+70856956 | Msa0518940:CDS |
| AAGAACACCAAGCTTGGCAT+TGG | 0.514725 | 3_4:-70856355 | None:intergenic |
| GTGTGGATGAGCCATTTGCT+TGG | 0.515513 | 3_4:+70856562 | Msa0518940:CDS |
| AAGTCAGTTATATGCATCAC+TGG | 0.516591 | 3_4:-70860323 | None:intergenic |
| TGCTGACTAGCAGGAACAGC+GGG | 0.516772 | 3_4:-70860140 | None:intergenic |
| TGATCCAAAATCCATTACTC+TGG | 0.520074 | 3_4:-70860069 | None:intergenic |
| TGTGGATGAGCCATTTGCTT+GGG | 0.520279 | 3_4:+70856563 | Msa0518940:CDS |
| ACTCCGGGAGCAAATAGATT+CGG | 0.520843 | 3_4:-70858185 | None:intergenic |
| AGGAAAGTTGGTCCTGTGGA+TGG | 0.520974 | 3_4:+70860017 | Msa0518940:CDS |
| TTCATGTAGGTTAGAGTGCA+GGG | 0.525977 | 3_4:+70856944 | Msa0518940:intron |
| GTGGTATCAACCGTTACATC+AGG | 0.526236 | 3_4:-70858362 | None:intergenic |
| AAACCTTGCTCCAACGATCA+AGG | 0.526683 | 3_4:-70857039 | None:intergenic |
| TAGTCCACAGGCCGAGAGGC+GGG | 0.528620 | 3_4:+70859778 | Msa0518940:CDS |
| AACAAGAAGGCCTTGATCGT+TGG | 0.529748 | 3_4:+70857029 | Msa0518940:CDS |
| CTAGCAGGAACAGCGGGTGA+CGG | 0.531824 | 3_4:-70860134 | None:intergenic |
| TTAACCCGCCTCTCGGCCTG+TGG | 0.531846 | 3_4:-70859782 | None:intergenic |
| GGATGGATCTGTTGTTCCAC+CGG | 0.536476 | 3_4:+70860034 | Msa0518940:CDS |
| GAAGAACAAGCTAAACAAGA+AGG | 0.536768 | 3_4:+70857016 | Msa0518940:CDS |
| AGCTCTCCTTCCCATTTGTG+GGG | 0.538570 | 3_4:-70858318 | None:intergenic |
| AGCTGCTGATTCCAGAGTAA+TGG | 0.538583 | 3_4:+70860058 | Msa0518940:CDS |
| TGAAAGGTTAACCCGCCTCT+CGG | 0.542326 | 3_4:-70859789 | None:intergenic |
| ACTCCGAATCTATTTGCTCC+CGG | 0.547966 | 3_4:+70858182 | Msa0518940:CDS |
| TCGGACACCTAATACTTGAA+AGG | 0.551552 | 3_4:-70859805 | None:intergenic |
| GTAGCAGCCAATGCCAAGCT+TGG | 0.557380 | 3_4:+70856348 | Msa0518940:CDS |
| TTATGCCAGGCCCCACAAAT+GGG | 0.557756 | 3_4:+70858308 | Msa0518940:intron |
| TCCCTATGCCCGTGAAGCAA+AGG | 0.558108 | 3_4:+70859862 | Msa0518940:CDS |
| CAGGTTCGGATTGTCCTAGA+AGG | 0.558167 | 3_4:+70858546 | Msa0518940:intron |
| AGGTGAAGGCAGTTCCTTCA+GGG | 0.559959 | 3_4:+70856304 | Msa0518940:CDS |
| GCTGATGATTCTATTCCATA+CGG | 0.560398 | 3_4:+70859755 | Msa0518940:CDS |
| GCTGAAGGCTGCAGAGCTTG+AGG | 0.560640 | 3_4:+70859523 | Msa0518940:CDS |
| TTCGTACTTGGCGCCCGATG+AGG | 0.561268 | 3_4:-70859901 | None:intergenic |
| TCGGCCTGTGGACTACCGTA+TGG | 0.561719 | 3_4:-70859770 | None:intergenic |
| CTTCTGCTTCAATGCAGGAA+AGG | 0.563682 | 3_4:-70860481 | None:intergenic |
| CTTGGACAAACTGAAACTCC+GGG | 0.563828 | 3_4:-70858200 | None:intergenic |
| GTGCCATTTCTGGAAGGAAA+GGG | 0.566530 | 3_4:+70860279 | Msa0518940:CDS |
| ACTCTGGAATCAGCAGCTCC+CGG | 0.567557 | 3_4:-70860053 | None:intergenic |
| AGGGGAGCTCTAGGTTCCGT+GGG | 0.571196 | 3_4:-70858398 | None:intergenic |
| CGTGCCATTTCTGGAAGGAA+AGG | 0.572657 | 3_4:+70860278 | Msa0518940:CDS |
| CAGCGGCAGGGAACTCAGCA+TGG | 0.572796 | 3_4:+70856271 | Msa0518940:CDS |
| CAGGTGGTTGAAGTTGTGAG+TGG | 0.576649 | 3_4:+70859716 | Msa0518940:intron |
| AGGCCTTGATCGTTGGAGCA+AGG | 0.578203 | 3_4:+70857036 | Msa0518940:CDS |
| GGGAAAGTAGAGAGTTTCTG+AGG | 0.580411 | 3_4:+70856583 | Msa0518940:CDS |
| ATGGTATAAGGCGAAGGTGA+AGG | 0.582899 | 3_4:+70856290 | Msa0518940:CDS |
| ATTGCCTTCGAATTTGAAGT+TGG | 0.585166 | 3_4:-70859587 | None:intergenic |
| TTCTAGGAAAGTTGGTCCTG+TGG | 0.586863 | 3_4:+70860013 | Msa0518940:CDS |
| CTTGTTGAGCAGGTTCGTGA+CGG | 0.588424 | 3_4:+70858153 | Msa0518940:CDS |
| CTCAGCATGGTATAAGGCGA+AGG | 0.589481 | 3_4:+70856284 | Msa0518940:CDS |
| TATTCCATACGGTAGTCCAC+AGG | 0.591693 | 3_4:+70859766 | Msa0518940:CDS |
| AGCTTGAGGCTAAGAAAACC+AGG | 0.592978 | 3_4:+70859537 | Msa0518940:CDS |
| TTTAGCATCCGCTCCAAAAG+GGG | 0.594992 | 3_4:-70858416 | None:intergenic |
| TTGAAGAATGGCAGCAACAG+CGG | 0.596568 | 3_4:+70856254 | None:intergenic |
| TGCAAACATGATGGAAGATG+AGG | 0.596761 | 3_4:+70859490 | Msa0518940:CDS |
| TTTCGACAGGCTCGTAGAGG+TGG | 0.597529 | 3_4:+70856540 | Msa0518940:intron |
| AAGGGGAGCTCTAGGTTCCG+TGG | 0.598049 | 3_4:-70858399 | None:intergenic |
| ACAGGCTCGTAGAGGTGGTG+TGG | 0.598077 | 3_4:+70856545 | Msa0518940:intron |
| GCATATAACTGACTTGATCA+CGG | 0.600630 | 3_4:+70860331 | Msa0518940:CDS |
| AGCAGGAACAGCGGGTGACG+GGG | 0.601160 | 3_4:-70860132 | None:intergenic |
| GCCAGGCCCCACAAATGGGA+AGG | 0.606553 | 3_4:+70858312 | Msa0518940:intron |
| TCGGATTGTCCTAGAAGGTG+TGG | 0.608560 | 3_4:+70858551 | Msa0518940:CDS |
| ACCACCAACTTCAAATTCGA+AGG | 0.610449 | 3_4:+70859583 | Msa0518940:CDS |
| TGAATGGAGTGCAAACATGA+TGG | 0.616810 | 3_4:+70859481 | Msa0518940:CDS |
| GTAGTCCACAGGCCGAGAGG+CGG | 0.618117 | 3_4:+70859777 | Msa0518940:CDS |
| GGGTCAGTGTATTATCCCGA+TGG | 0.623221 | 3_4:+70858594 | Msa0518940:CDS |
| GAAAGGGATCCATTCTGCCA+AGG | 0.625507 | 3_4:+70860295 | Msa0518940:CDS |
| TCCCGATGGTGAATCAGCAA+AGG | 0.628290 | 3_4:+70858608 | Msa0518940:CDS |
| CAGCACGTGCCATTTCTGGA+AGG | 0.634391 | 3_4:+70860273 | Msa0518940:CDS |
| GGTGAAGGCAGTTCCTTCAG+GGG | 0.639299 | 3_4:+70856305 | Msa0518940:CDS |
| ACGACGATGCAATCCCCTGA+AGG | 0.639907 | 3_4:-70856318 | None:intergenic |
| GGAACAACAGATCCATCCAC+AGG | 0.643890 | 3_4:-70860029 | None:intergenic |
| GAATGGCAGCAACAGCGGCA+GGG | 0.650272 | 3_4:+70856259 | None:intergenic |
| TGAGGCAAAGAAGAAGCTGA+AGG | 0.650961 | 3_4:+70859508 | Msa0518940:CDS |
| AAATTTCGACAGGCTCGTAG+AGG | 0.659807 | 3_4:+70856537 | Msa0518940:intron |
| TGTAGTTGTACCTGATGTAA+CGG | 0.659956 | 3_4:+70858352 | Msa0518940:CDS |
| GCTGAATTGATAATTGGACG+TGG | 0.668071 | 3_4:+70860179 | Msa0518940:CDS |
| GATGGATCTGTTGTTCCACC+GGG | 0.670950 | 3_4:+70860035 | Msa0518940:CDS |
| CTGGAATCAGCAGCTCCCGG+TGG | 0.672231 | 3_4:-70860050 | None:intergenic |
| CACTAATGGAGATGTCCCCA+CGG | 0.673795 | 3_4:+70858382 | Msa0518940:CDS |
| TCATGTAGGTTAGAGTGCAG+GGG | 0.680210 | 3_4:+70856945 | Msa0518940:intron |
| ACGGTAGTCCACAGGCCGAG+AGG | 0.680585 | 3_4:+70859774 | Msa0518940:CDS |
| TCAGTTATATGCATCACTGG+AGG | 0.687302 | 3_4:-70860320 | None:intergenic |
| TTGCTGACTAGCAGGAACAG+CGG | 0.688736 | 3_4:-70860141 | None:intergenic |
| ATCGCTGTCAGCTTTCCCAG+AGG | 0.716546 | 3_4:-70860105 | None:intergenic |
| GGGGAGCTCTAGGTTCCGTG+GGG | 0.769344 | 3_4:-70858397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATAATCAATTAAGTA+TGG | + | chr3_4:70857256-70857275 | Msa0518940:intron | 10.0% |
| !! | AAAAAATTATATATCACTAT+GGG | - | chr3_4:70857699-70857718 | None:intergenic | 10.0% |
| !! | TAAAAAATTATATATCACTA+TGG | - | chr3_4:70857700-70857719 | None:intergenic | 10.0% |
| !!! | TAGTGATATATAATTTTTTA+AGG | + | chr3_4:70857700-70857719 | Msa0518940:intron | 10.0% |
| !!! | ATTTATATGTTTTAATTGGA+TGG | + | chr3_4:70856506-70856525 | Msa0518940:intron | 15.0% |
| !!! | TTTGCCAAATTTTTTTTTTT+TGG | + | chr3_4:70857465-70857484 | Msa0518940:intron | 15.0% |
| !!! | AATCTTTTATATAGAGTATT+GGG | + | chr3_4:70857668-70857687 | Msa0518940:intron | 15.0% |
| !! | AAAGTATATTATTAACTAAG+GGG | - | chr3_4:70857770-70857789 | None:intergenic | 15.0% |
| !!! | GAAAGTATATTATTAACTAA+GGG | - | chr3_4:70857771-70857790 | None:intergenic | 15.0% |
| !!! | AGAAAGTATATTATTAACTA+AGG | - | chr3_4:70857772-70857791 | None:intergenic | 15.0% |
| !!! | ATTTTTCTAAATTCCAAAAA+TGG | + | chr3_4:70858518-70858537 | Msa0518940:intron | 15.0% |
| !!! | TTTTGAATACTTCGTAATTA+AGG | + | chr3_4:70857079-70857098 | Msa0518940:intron | 20.0% |
| !! | TTTGAATACTTCGTAATTAA+GGG | + | chr3_4:70857080-70857099 | Msa0518940:intron | 20.0% |
| !! | TATGGCAATAATAATTTGAA+TGG | + | chr3_4:70857274-70857293 | Msa0518940:intron | 20.0% |
| !! | CTGACCAAAAAAAAAAAATT+TGG | - | chr3_4:70857472-70857491 | None:intergenic | 20.0% |
| !!! | CAAATTTTTTTTTTTTGGTC+AGG | + | chr3_4:70857470-70857489 | Msa0518940:intron | 20.0% |
| !!! | CAATCTTTTATATAGAGTAT+TGG | + | chr3_4:70857667-70857686 | Msa0518940:intron | 20.0% |
| !! | GGTATATTTAGTATTAATCT+GGG | - | chr3_4:70857727-70857746 | None:intergenic | 20.0% |
| !! | AGGTATATTTAGTATTAATC+TGG | - | chr3_4:70857728-70857747 | None:intergenic | 20.0% |
| !!! | GGTAAGAAAGTATAAAAAAA+AGG | - | chr3_4:70857748-70857767 | None:intergenic | 20.0% |
| !! | AAGTATATTATTAACTAAGG+GGG | - | chr3_4:70857769-70857788 | None:intergenic | 20.0% |
| !! | AAGATTTCAATGATATAAAC+AGG | - | chr3_4:70858009-70858028 | None:intergenic | 20.0% |
| !! | CTAAATAAATCGTGTTAATA+TGG | - | chr3_4:70858683-70858702 | None:intergenic | 20.0% |
| !!! | TGTTTGTACATAATTTTAAG+TGG | + | chr3_4:70858809-70858828 | Msa0518940:intron | 20.0% |
| !! | TATTCAATGTATCTAAAAAG+TGG | - | chr3_4:70858993-70859012 | None:intergenic | 20.0% |
| !! | AATCAAATTGATTAAAGACA+TGG | - | chr3_4:70859430-70859449 | None:intergenic | 20.0% |
| !!! | ATTTGATTTTTCCATCAAAT+AGG | + | chr3_4:70859442-70859461 | Msa0518940:intron | 20.0% |
| !!! | TTTGATTTTTCCATCAAATA+GGG | + | chr3_4:70859443-70859462 | Msa0518940:intron | 20.0% |
| !!! | GTTAATTTCTTCAATTTTTC+AGG | + | chr3_4:70859697-70859716 | Msa0518940:intron | 20.0% |
| !!! | GTTTGCAAAATTTTAATTAC+TGG | + | chr3_4:70860353-70860372 | Msa0518940:intron | 20.0% |
| ! | CTAATCAAAATTACCAATCT+AGG | - | chr3_4:70856417-70856436 | None:intergenic | 25.0% |
| !!! | ATTTAATGTGTTTTGAAGCA+AGG | + | chr3_4:70856441-70856460 | Msa0518940:intron | 25.0% |
| !!! | GTTTTAATTGGATGGAATTT+TGG | + | chr3_4:70856514-70856533 | Msa0518940:intron | 25.0% |
| ! | ATTAAATGCAACATGTAATC+AGG | - | chr3_4:70857243-70857262 | None:intergenic | 25.0% |
| ! | TGGTCAATATTCTAAATTGT+CGG | + | chr3_4:70857294-70857313 | Msa0518940:intron | 25.0% |
| ! | TGATGTCGTGTAAATTTAAA+TGG | - | chr3_4:70857961-70857980 | None:intergenic | 25.0% |
| !! | AAAAGCAATATAACTTGTAG+AGG | - | chr3_4:70858487-70858506 | None:intergenic | 25.0% |
| ! | ATAAGTTCAGCAATTTGATT+GGG | + | chr3_4:70858574-70858593 | Msa0518940:CDS | 25.0% |
| ! | AAAATGATCCAAAATTGCTT+CGG | - | chr3_4:70858787-70858806 | None:intergenic | 25.0% |
| !!! | TAATTTTAAGTGGTCTAAGA+TGG | + | chr3_4:70858819-70858838 | Msa0518940:intron | 25.0% |
| ! | TTACTGGTCGTTATATATAT+GGG | - | chr3_4:70858871-70858890 | None:intergenic | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | - | chr3_4:70858908-70858927 | None:intergenic | 25.0% |
| ! | ATAGATATTGCCTAATGATA+CGG | - | chr3_4:70859296-70859315 | None:intergenic | 25.0% |
| ! | AACAAACTATTAAGTGACTT+TGG | - | chr3_4:70859386-70859405 | None:intergenic | 25.0% |
| !! | GTTTTGCTAAATATGTTGAA+TGG | + | chr3_4:70859465-70859484 | Msa0518940:CDS | 25.0% |
| !! | ATTCATGACCAAAATTTTAC+TGG | + | chr3_4:70859608-70859627 | Msa0518940:CDS | 25.0% |
| !! | TTACCTTTCCAGTAAAATTT+TGG | - | chr3_4:70859619-70859638 | None:intergenic | 25.0% |
| !!! | CTCATTTTTTTTATGCCAAA+TGG | + | chr3_4:70859652-70859671 | Msa0518940:intron | 25.0% |
| !!! | AATTTCTTCAATTTTTCAGG+TGG | + | chr3_4:70859700-70859719 | Msa0518940:intron | 25.0% |
| !!! | ACTGATTACTTCTATTTTTC+AGG | + | chr3_4:70859971-70859990 | Msa0518940:intron | 25.0% |
| ! | ATGTACAAATGGAATATTCT+AGG | + | chr3_4:70859997-70860016 | Msa0518940:CDS | 25.0% |
| !! | AATGTTGCTGAATTGATAAT+TGG | + | chr3_4:70860173-70860192 | Msa0518940:CDS | 25.0% |
| !! | TCCTTTTCTTTCATATTGTT+AGG | + | chr3_4:70860429-70860448 | Msa0518940:intron | 25.0% |
| ! | GATAAAGTGATTGATTTCTC+AGG | - | chr3_4:70856381-70856400 | None:intergenic | 30.0% |
| GATCTGATATTGTATTGTTG+TGG | + | chr3_4:70856684-70856703 | Msa0518940:intron | 30.0% | |
| ! | AGATTTGCATGTGATTCTTT+TGG | + | chr3_4:70856894-70856913 | Msa0518940:intron | 30.0% |
| !!! | CTTTTTTGGCAGAATTGTTA+CGG | + | chr3_4:70856990-70857009 | Msa0518940:CDS | 30.0% |
| GAAGAAGTGAAAAGCTATAA+AGG | + | chr3_4:70857520-70857539 | Msa0518940:intron | 30.0% | |
| ! | ATTTTCTCTTCATCATCTGT+CGG | - | chr3_4:70857551-70857570 | None:intergenic | 30.0% |
| AAATGGCTATAGAAGAAGAA+CGG | + | chr3_4:70857567-70857586 | Msa0518940:intron | 30.0% | |
| ! | AAAGGTAGATCTAAGAGTTT+TGG | + | chr3_4:70857596-70857615 | Msa0518940:intron | 30.0% |
| !! | TTTATATAGAGTATTGGGCT+AGG | + | chr3_4:70857673-70857692 | Msa0518940:intron | 30.0% |
| TGCGAGTGTATCATATATTA+TGG | + | chr3_4:70858030-70858049 | Msa0518940:intron | 30.0% | |
| GAGTGTATCATATATTATGG+TGG | + | chr3_4:70858033-70858052 | Msa0518940:intron | 30.0% | |
| GGCATAAAGACAAAATAAGT+GGG | - | chr3_4:70858295-70858314 | None:intergenic | 30.0% | |
| TGGCATAAAGACAAAATAAG+TGG | - | chr3_4:70858296-70858315 | None:intergenic | 30.0% | |
| !!! | ACTTATTTTGTCTTTATGCC+AGG | + | chr3_4:70858295-70858314 | Msa0518940:intron | 30.0% |
| GATAAGTTCAGCAATTTGAT+TGG | + | chr3_4:70858573-70858592 | Msa0518940:CDS | 30.0% | |
| TAGTCAAGATCAAATCTTGT+TGG | + | chr3_4:70858700-70858719 | Msa0518940:intron | 30.0% | |
| CTTACTGGTCGTTATATATA+TGG | - | chr3_4:70858872-70858891 | None:intergenic | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr3_4:70859017-70859036 | Msa0518940:intron | 30.0% |
| TTAAAAACATATACTCCCTC+CGG | - | chr3_4:70859039-70859058 | None:intergenic | 30.0% | |
| !! | CTTTTTCACAACCATTTAGT+TGG | - | chr3_4:70859099-70859118 | None:intergenic | 30.0% |
| CAACTAAATGGTTGTGAAAA+AGG | + | chr3_4:70859097-70859116 | Msa0518940:intron | 30.0% | |
| ATGATACGGCAATAAAACTA+AGG | - | chr3_4:70859282-70859301 | None:intergenic | 30.0% | |
| !!! | AGTTTTATTGCCGTATCATT+AGG | + | chr3_4:70859283-70859302 | Msa0518940:intron | 30.0% |
| ATTAGGCAATATCTATTGCA+TGG | + | chr3_4:70859300-70859319 | Msa0518940:intron | 30.0% | |
| !! | AGTCACTTAATAGTTTGTTG+TGG | + | chr3_4:70859387-70859406 | Msa0518940:intron | 30.0% |
| TTTAGCAAAACCCTATTTGA+TGG | - | chr3_4:70859456-70859475 | None:intergenic | 30.0% | |
| AGAAAACCAGGTTAAGAATT+TGG | + | chr3_4:70859549-70859568 | Msa0518940:CDS | 30.0% | |
| ! | TGACCAAAATTTTACTGGAA+AGG | + | chr3_4:70859613-70859632 | Msa0518940:CDS | 30.0% |
| TCACTGAAGAAATAACCATT+TGG | - | chr3_4:70859670-70859689 | None:intergenic | 30.0% | |
| TCGGCAATGATATTAAAAGA+AGG | - | chr3_4:70859940-70859959 | None:intergenic | 30.0% | |
| !!! | TTTTCAGGTGAATGTACAAA+TGG | + | chr3_4:70859986-70860005 | Msa0518940:intron | 30.0% |
| ! | ATGGAATATTCTAGGAAAGT+TGG | + | chr3_4:70860005-70860024 | Msa0518940:CDS | 30.0% |
| GCCTAACAATATGAAAGAAA+AGG | - | chr3_4:70860433-70860452 | None:intergenic | 30.0% | |
| !! | GGAATTTTGGAAATTTCGAC+AGG | + | chr3_4:70856527-70856546 | Msa0518940:intron | 35.0% |
| !! | TTTCTGAGGAAGCTTTTGAT+AGG | + | chr3_4:70856597-70856616 | Msa0518940:CDS | 35.0% |
| CATTAACTGAGAGTTTGGAA+CGG | + | chr3_4:70856786-70856805 | Msa0518940:intron | 35.0% | |
| ! | TTGGATTGCATTGTTGATTG+TGG | + | chr3_4:70856913-70856932 | Msa0518940:intron | 35.0% |
| ! | TGGATTGCATTGTTGATTGT+GGG | + | chr3_4:70856914-70856933 | Msa0518940:intron | 35.0% |
| CGTAACAATTCTGCCAAAAA+AGG | - | chr3_4:70856992-70857011 | None:intergenic | 35.0% | |
| GAAGAACAAGCTAAACAAGA+AGG | + | chr3_4:70857016-70857035 | Msa0518940:CDS | 35.0% | |
| ACATGTAATCAGGTCAACAT+CGG | - | chr3_4:70857233-70857252 | None:intergenic | 35.0% | |
| AAAATTTGGCAAACACGACA+CGG | - | chr3_4:70857458-70857477 | None:intergenic | 35.0% | |
| CGAAAACAAGAATGAGAAGA+AGG | + | chr3_4:70857495-70857514 | Msa0518940:intron | 35.0% | |
| GACAGATGATGAAGAGAAAA+TGG | + | chr3_4:70857550-70857569 | Msa0518940:intron | 35.0% | |
| TGTTTGTGGAGAGAATAACT+AGG | + | chr3_4:70857632-70857651 | Msa0518940:intron | 35.0% | |
| GTTTGTGGAGAGAATAACTA+GGG | + | chr3_4:70857633-70857652 | Msa0518940:intron | 35.0% | |
| ! | TTACAATTTTTCCCTCGAGT+GGG | + | chr3_4:70857835-70857854 | Msa0518940:intron | 35.0% |
| TTTACACGACATCATGATTC+TGG | + | chr3_4:70857967-70857986 | Msa0518940:intron | 35.0% | |
| TCATATATTATGGTGGTTGC+AGG | + | chr3_4:70858040-70858059 | Msa0518940:intron | 35.0% | |
| ! | TTTGTCCAAGTTTTTGTTGC+TGG | + | chr3_4:70858213-70858232 | Msa0518940:CDS | 35.0% |
| GAATTCCAGCAACAAAAACT+TGG | - | chr3_4:70858221-70858240 | None:intergenic | 35.0% | |
| ! | AGTTTTTGTTGCTGGAATTC+AGG | + | chr3_4:70858221-70858240 | Msa0518940:CDS | 35.0% |
| ! | ACGTTTCATGAATGCTACTT+TGG | + | chr3_4:70858245-70858264 | Msa0518940:intron | 35.0% |
| GTGGGCACACATATAAAAAA+TGG | - | chr3_4:70858277-70858296 | None:intergenic | 35.0% | |
| TGTAGTTGTACCTGATGTAA+CGG | + | chr3_4:70858352-70858371 | Msa0518940:CDS | 35.0% | |
| AATTCCAAAAATGGCTATGC+AGG | + | chr3_4:70858527-70858546 | Msa0518940:intron | 35.0% | |
| !! | ATCTGACTTGTTTACTACCA+CGG | + | chr3_4:70858723-70858742 | Msa0518940:intron | 35.0% |
| AGTAAGATATATACTCCCTC+CGG | + | chr3_4:70858886-70858905 | Msa0518940:intron | 35.0% | |
| ! | ACAACCATTTAGTTGGTACA+TGG | - | chr3_4:70859092-70859111 | None:intergenic | 35.0% |
| !!! | CATTTTACTTGCTATGATGC+TGG | + | chr3_4:70859123-70859142 | Msa0518940:intron | 35.0% |
| TCTATTGCATGGCATTTAGT+TGG | + | chr3_4:70859311-70859330 | Msa0518940:intron | 35.0% | |
| GTTTGTCCAAATTCTTAACC+TGG | - | chr3_4:70859558-70859577 | None:intergenic | 35.0% | |
| ! | ATTGCCTTCGAATTTGAAGT+TGG | - | chr3_4:70859590-70859609 | None:intergenic | 35.0% |
| GCTGATGATTCTATTCCATA+CGG | + | chr3_4:70859755-70859774 | Msa0518940:CDS | 35.0% | |
| ! | GGGTTAACCTTTCAAGTATT+AGG | + | chr3_4:70859798-70859817 | Msa0518940:CDS | 35.0% |
| AAGTATTAGGTGTCCGAAAA+TGG | + | chr3_4:70859811-70859830 | Msa0518940:CDS | 35.0% | |
| AGTATTAGGTGTCCGAAAAT+GGG | + | chr3_4:70859812-70859831 | Msa0518940:CDS | 35.0% | |
| CCACAATATATCTTCGTACT+TGG | - | chr3_4:70859916-70859935 | None:intergenic | 35.0% | |
| CCAAGTACGAAGATATATTG+TGG | + | chr3_4:70859913-70859932 | Msa0518940:intron | 35.0% | |
| TAATCAGTTGTAGCTTAGGT+CGG | - | chr3_4:70859959-70859978 | None:intergenic | 35.0% | |
| GAAGTAATCAGTTGTAGCTT+AGG | - | chr3_4:70859963-70859982 | None:intergenic | 35.0% | |
| !!! | GATTCCAGAGTAATGGATTT+TGG | + | chr3_4:70860065-70860084 | Msa0518940:CDS | 35.0% |
| TGATCCAAAATCCATTACTC+TGG | - | chr3_4:70860072-70860091 | None:intergenic | 35.0% | |
| AAGTCAGTTATATGCATCAC+TGG | - | chr3_4:70860326-70860345 | None:intergenic | 35.0% | |
| !! | GCATATAACTGACTTGATCA+CGG | + | chr3_4:70860331-70860350 | Msa0518940:CDS | 35.0% |
| TCTCTACTTTCCCAAGCAAA+TGG | - | chr3_4:70856576-70856595 | None:intergenic | 40.0% | |
| ! | GAGGAAGCTTTTGATAGGAA+AGG | + | chr3_4:70856602-70856621 | Msa0518940:CDS | 40.0% |
| CCAAACTCTCAGTTAATGGA+TGG | - | chr3_4:70856784-70856803 | None:intergenic | 40.0% | |
| CCATCCATTAACTGAGAGTT+TGG | + | chr3_4:70856781-70856800 | Msa0518940:intron | 40.0% | |
| CGTTCCAAACTCTCAGTTAA+TGG | - | chr3_4:70856788-70856807 | None:intergenic | 40.0% | |
| !! | GAGTTTGGAACGGTTTTTCT+TGG | + | chr3_4:70856796-70856815 | Msa0518940:intron | 40.0% |
| !! | TGCTTGTTGTTTCTCAAGGA+TGG | + | chr3_4:70856836-70856855 | Msa0518940:intron | 40.0% |
| !! | GCTTGTTGTTTCTCAAGGAT+GGG | + | chr3_4:70856837-70856856 | Msa0518940:intron | 40.0% |
| TTCATGTAGGTTAGAGTGCA+GGG | + | chr3_4:70856944-70856963 | Msa0518940:intron | 40.0% | |
| !!! | AGGAGAAGCAAGTCCTTTTT+TGG | + | chr3_4:70856976-70856995 | Msa0518940:CDS | 40.0% |
| CATGTAATCAGGTCAACATC+GGG | - | chr3_4:70857232-70857251 | None:intergenic | 40.0% | |
| GAAGAAGAACGGTTGAACAA+AGG | + | chr3_4:70857578-70857597 | Msa0518940:intron | 40.0% | |
| TGGAGAGAATAACTAGGGTT+TGG | + | chr3_4:70857638-70857657 | Msa0518940:intron | 40.0% | |
| ! | GTTACAATTTTTCCCTCGAG+TGG | + | chr3_4:70857834-70857853 | Msa0518940:intron | 40.0% |
| TAAGATCGAGGAACGTAACA+CGG | - | chr3_4:70857871-70857890 | None:intergenic | 40.0% | |
| TAGAAGACAGCAATGTAGTC+AGG | - | chr3_4:70857935-70857954 | None:intergenic | 40.0% | |
| ! | ACGACATCATGATTCTGGAA+TGG | + | chr3_4:70857972-70857991 | Msa0518940:intron | 40.0% |
| AAGATTTCTGACAGATGCCT+CGG | - | chr3_4:70858078-70858097 | None:intergenic | 40.0% | |
| AAAGTTGCTAGCATCACCAA+GGG | - | chr3_4:70858111-70858130 | None:intergenic | 40.0% | |
| ACTTGGACAAACTGAAACTC+CGG | - | chr3_4:70858204-70858223 | None:intergenic | 40.0% | |
| TCAGGTACAACTACACTTTC+AGG | - | chr3_4:70858347-70858366 | None:intergenic | 40.0% | |
| ! | GTAACGGTTGATACCACTAA+TGG | + | chr3_4:70858368-70858387 | Msa0518940:CDS | 40.0% |
| ATTTAGCATCCGCTCCAAAA+GGG | - | chr3_4:70858420-70858439 | None:intergenic | 40.0% | |
| AATTTAGCATCCGCTCCAAA+AGG | - | chr3_4:70858421-70858440 | None:intergenic | 40.0% | |
| CAAAAATGGCTATGCAGGTT+CGG | + | chr3_4:70858532-70858551 | Msa0518940:intron | 40.0% | |
| TGAACTTATCCACACCTTCT+AGG | - | chr3_4:70858563-70858582 | None:intergenic | 40.0% | |
| !! | ATCCTTTGCTGATTCACCAT+CGG | - | chr3_4:70858613-70858632 | None:intergenic | 40.0% |
| TGGTGAATCAGCAAAGGATT+TGG | + | chr3_4:70858614-70858633 | Msa0518940:CDS | 40.0% | |
| ATGCTACAGTGTAAAAACCG+TGG | - | chr3_4:70858743-70858762 | None:intergenic | 40.0% | |
| ! | TGTTGAGACCGAAGCAATTT+TGG | + | chr3_4:70858776-70858795 | Msa0518940:intron | 40.0% |
| ! | AAGTGGTCTAAGATGGTTGT+TGG | + | chr3_4:70858826-70858845 | Msa0518940:intron | 40.0% |
| ! | GGAGGGAGTATATATCTTAC+TGG | - | chr3_4:70858887-70858906 | None:intergenic | 40.0% |
| TGCTTATAATAGTGACCGGA+GGG | - | chr3_4:70859021-70859040 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr3_4:70859020-70859039 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3_4:70859020-70859039 | Msa0518940:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3_4:70859021-70859040 | Msa0518940:intron | 40.0% | |
| ! | TTAGTTGGTACATGGTAGGT+AGG | - | chr3_4:70859084-70859103 | None:intergenic | 40.0% |
| ! | CCATTTAGTTGGTACATGGT+AGG | - | chr3_4:70859088-70859107 | None:intergenic | 40.0% |
| CCTACCATGTACCAACTAAA+TGG | + | chr3_4:70859085-70859104 | Msa0518940:intron | 40.0% | |
| TTCGAATACCCTATCGATGA+GGG | - | chr3_4:70859359-70859378 | None:intergenic | 40.0% | |
| ATTCGAATACCCTATCGATG+AGG | - | chr3_4:70859360-70859379 | None:intergenic | 40.0% | |
| !! | AATAGTTTGTTGTGGCAGTC+TGG | + | chr3_4:70859395-70859414 | Msa0518940:intron | 40.0% |
| TGAATGGAGTGCAAACATGA+TGG | + | chr3_4:70859481-70859500 | Msa0518940:CDS | 40.0% | |
| ! | TGCAAACATGATGGAAGATG+AGG | + | chr3_4:70859490-70859509 | Msa0518940:CDS | 40.0% |
| ACCACCAACTTCAAATTCGA+AGG | + | chr3_4:70859583-70859602 | Msa0518940:CDS | 40.0% | |
| TCGGACACCTAATACTTGAA+AGG | - | chr3_4:70859808-70859827 | None:intergenic | 40.0% | |
| TCAAGAACTCCTTTGCTTCA+CGG | - | chr3_4:70859874-70859893 | None:intergenic | 40.0% | |
| ! | TCAGTTTTCCTATTGTCCTC+TGG | + | chr3_4:70860089-70860108 | Msa0518940:CDS | 40.0% |
| ! | CAGTTTTCCTATTGTCCTCT+GGG | + | chr3_4:70860090-70860109 | Msa0518940:CDS | 40.0% |
| ! | GCTGAATTGATAATTGGACG+TGG | + | chr3_4:70860179-70860198 | Msa0518940:CDS | 40.0% |
| ! | TTGATAATTGGACGTGGCTT+TGG | + | chr3_4:70860185-70860204 | Msa0518940:CDS | 40.0% |
| TCAGTTATATGCATCACTGG+AGG | - | chr3_4:70860323-70860342 | None:intergenic | 40.0% | |
| !! | CAAGAAGTCTTTGGCTTTCT+TGG | - | chr3_4:70860461-70860480 | None:intergenic | 40.0% |
| AGGGAACTCAGCATGGTATA+AGG | + | chr3_4:70856278-70856297 | Msa0518940:CDS | 45.0% | |
| ATGGTATAAGGCGAAGGTGA+AGG | + | chr3_4:70856290-70856309 | Msa0518940:CDS | 45.0% | |
| AAGAACACCAAGCTTGGCAT+TGG | - | chr3_4:70856358-70856377 | None:intergenic | 45.0% | |
| ! | GTCGTTGATTGCTCCTAGAT+TGG | + | chr3_4:70856401-70856420 | Msa0518940:CDS | 45.0% |
| AAATTTCGACAGGCTCGTAG+AGG | + | chr3_4:70856537-70856556 | Msa0518940:intron | 45.0% | |
| TGTGGATGAGCCATTTGCTT+GGG | + | chr3_4:70856563-70856582 | Msa0518940:CDS | 45.0% | |
| GGGAAAGTAGAGAGTTTCTG+AGG | + | chr3_4:70856583-70856602 | Msa0518940:CDS | 45.0% | |
| ! | CTCTCAGTTAATGGATGGCA+CGG | - | chr3_4:70856779-70856798 | None:intergenic | 45.0% |
| !! | GCACTGCTTGTTGTTTCTCA+AGG | + | chr3_4:70856832-70856851 | Msa0518940:intron | 45.0% |
| TGTTTCTCAAGGATGGGCAA+AGG | + | chr3_4:70856843-70856862 | Msa0518940:intron | 45.0% | |
| GTTCATGTAGGTTAGAGTGC+AGG | + | chr3_4:70856943-70856962 | Msa0518940:intron | 45.0% | |
| TCATGTAGGTTAGAGTGCAG+GGG | + | chr3_4:70856945-70856964 | Msa0518940:intron | 45.0% | |
| AACAAGAAGGCCTTGATCGT+TGG | + | chr3_4:70857029-70857048 | Msa0518940:CDS | 45.0% | |
| AAACCTTGCTCCAACGATCA+AGG | - | chr3_4:70857042-70857061 | None:intergenic | 45.0% | |
| CAACTGAGGTGCATTGTGTT+TGG | + | chr3_4:70857156-70857175 | Msa0518940:intron | 45.0% | |
| TCTATAGACGCTGTCTTCCA+AGG | + | chr3_4:70857354-70857373 | Msa0518940:intron | 45.0% | |
| !! | CTAAGAGTTTTGGCAAGCGA+CGG | + | chr3_4:70857606-70857625 | Msa0518940:intron | 45.0% |
| AACGAGTTCCTACGTAGGAT+CGG | - | chr3_4:70857912-70857931 | None:intergenic | 45.0% | |
| CAAAGTTGCTAGCATCACCA+AGG | - | chr3_4:70858112-70858131 | None:intergenic | 45.0% | |
| TGCTAGCAACTTTGATGCCA+TGG | + | chr3_4:70858118-70858137 | Msa0518940:intron | 45.0% | |
| GCTAGCAACTTTGATGCCAT+GGG | + | chr3_4:70858119-70858138 | Msa0518940:intron | 45.0% | |
| CTAGCAACTTTGATGCCATG+GGG | + | chr3_4:70858120-70858139 | Msa0518940:intron | 45.0% | |
| TTTGATGCCATGGGGTTGTT+AGG | + | chr3_4:70858128-70858147 | Msa0518940:intron | 45.0% | |
| ! | TTGTTAGGCACTTGTTGAGC+AGG | + | chr3_4:70858143-70858162 | Msa0518940:intron | 45.0% |
| ACTCCGAATCTATTTGCTCC+CGG | + | chr3_4:70858182-70858201 | Msa0518940:CDS | 45.0% | |
| ACTCCGGGAGCAAATAGATT+CGG | - | chr3_4:70858188-70858207 | None:intergenic | 45.0% | |
| CTTGGACAAACTGAAACTCC+GGG | - | chr3_4:70858203-70858222 | None:intergenic | 45.0% | |
| GTGGTATCAACCGTTACATC+AGG | - | chr3_4:70858365-70858384 | None:intergenic | 45.0% | |
| TTTAGCATCCGCTCCAAAAG+GGG | - | chr3_4:70858419-70858438 | None:intergenic | 45.0% | |
| !! | CGAACCTGCATAGCCATTTT+TGG | - | chr3_4:70858534-70858553 | None:intergenic | 45.0% |
| !! | TCCTTTGCTGATTCACCATC+GGG | - | chr3_4:70858612-70858631 | None:intergenic | 45.0% |
| CTAAGATGGTTGTTGGTACG+TGG | + | chr3_4:70858833-70858852 | Msa0518940:intron | 45.0% | |
| GGGAGAAACATGGGATATCA+AGG | - | chr3_4:70859338-70859357 | None:intergenic | 45.0% | |
| ATCGATGAGGGGAGAAACAT+GGG | - | chr3_4:70859347-70859366 | None:intergenic | 45.0% | |
| TATCGATGAGGGGAGAAACA+TGG | - | chr3_4:70859348-70859367 | None:intergenic | 45.0% | |
| ATGTTTCTCCCCTCATCGAT+AGG | + | chr3_4:70859347-70859366 | Msa0518940:intron | 45.0% | |
| TGTTTCTCCCCTCATCGATA+GGG | + | chr3_4:70859348-70859367 | Msa0518940:intron | 45.0% | |
| TCGAATACCCTATCGATGAG+GGG | - | chr3_4:70859358-70859377 | None:intergenic | 45.0% | |
| TGAGGCAAAGAAGAAGCTGA+AGG | + | chr3_4:70859508-70859527 | Msa0518940:CDS | 45.0% | |
| AGCTTGAGGCTAAGAAAACC+AGG | + | chr3_4:70859537-70859556 | Msa0518940:CDS | 45.0% | |
| ! | GCCTTCGAATTTGAAGTTGG+TGG | - | chr3_4:70859587-70859606 | None:intergenic | 45.0% |
| TATTCCATACGGTAGTCCAC+AGG | + | chr3_4:70859766-70859785 | Msa0518940:CDS | 45.0% | |
| CAAGAACTCCTTTGCTTCAC+GGG | - | chr3_4:70859873-70859892 | None:intergenic | 45.0% | |
| TTCTTGAGAACACGCCTCAT+CGG | + | chr3_4:70859887-70859906 | Msa0518940:CDS | 45.0% | |
| ! | TTCTAGGAAAGTTGGTCCTG+TGG | + | chr3_4:70860013-70860032 | Msa0518940:CDS | 45.0% |
| !! | AGCTGCTGATTCCAGAGTAA+TGG | + | chr3_4:70860058-70860077 | Msa0518940:CDS | 45.0% |
| TTCCTGCTAGTCAGCAAACT+GGG | + | chr3_4:70860147-70860166 | Msa0518940:CDS | 45.0% | |
| !! | GTGCCATTTCTGGAAGGAAA+GGG | + | chr3_4:70860279-70860298 | Msa0518940:CDS | 45.0% |
| GATCCCTTTCCTTCCAGAAA+TGG | - | chr3_4:70860285-70860304 | None:intergenic | 45.0% | |
| CAGGAAAGGCAAGAAGTCTT+TGG | - | chr3_4:70860470-70860489 | None:intergenic | 45.0% | |
| !!! | TATAATTTATATGTTTTAAT+TGG | + | chr3_4:70856502-70856521 | Msa0518940:intron | 5.0% |
| CTCAGCATGGTATAAGGCGA+AGG | + | chr3_4:70856284-70856303 | Msa0518940:CDS | 50.0% | |
| AAGGTGAAGGCAGTTCCTTC+AGG | + | chr3_4:70856303-70856322 | Msa0518940:CDS | 50.0% | |
| AGGTGAAGGCAGTTCCTTCA+GGG | + | chr3_4:70856304-70856323 | Msa0518940:CDS | 50.0% | |
| CTCAGGAAGAACACCAAGCT+TGG | - | chr3_4:70856364-70856383 | None:intergenic | 50.0% | |
| GTGTGGATGAGCCATTTGCT+TGG | + | chr3_4:70856562-70856581 | Msa0518940:CDS | 50.0% | |
| TGTGGGCTTGTCGTTCATGT+AGG | + | chr3_4:70856931-70856950 | Msa0518940:intron | 50.0% | |
| TCGTTGGAGCAAGGTTTGTC+TGG | + | chr3_4:70857045-70857064 | Msa0518940:intron | 50.0% | |
| !! | CCTCAGTTGCAAGAGCATCA+AGG | - | chr3_4:70857145-70857164 | None:intergenic | 50.0% |
| CCTTGATGCTCTTGCAACTG+AGG | + | chr3_4:70857142-70857161 | Msa0518940:intron | 50.0% | |
| ATCAAGGTCGTAGCACGGTT+GGG | - | chr3_4:70857435-70857454 | None:intergenic | 50.0% | |
| GTTCGTAAGAACCCACTCGA+GGG | - | chr3_4:70857849-70857868 | None:intergenic | 50.0% | |
| AGTTCCTACGTAGGATCGGT+GGG | - | chr3_4:70857908-70857927 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | - | chr3_4:70857917-70857936 | None:intergenic | 50.0% | |
| TTATGGTGGTTGCAGGTTCC+CGG | + | chr3_4:70858047-70858066 | Msa0518940:intron | 50.0% | |
| ATTTCTGACAGATGCCTCGG+CGG | - | chr3_4:70858075-70858094 | None:intergenic | 50.0% | |
| AATCTTCCACCTTCTGCCCT+TGG | + | chr3_4:70858092-70858111 | Msa0518940:intron | 50.0% | |
| ACAAGTGCCTAACAACCCCA+TGG | - | chr3_4:70858138-70858157 | None:intergenic | 50.0% | |
| CTTGTTGAGCAGGTTCGTGA+CGG | + | chr3_4:70858153-70858172 | Msa0518940:CDS | 50.0% | |
| TTTATGCCAGGCCCCACAAA+TGG | + | chr3_4:70858307-70858326 | Msa0518940:intron | 50.0% | |
| TTATGCCAGGCCCCACAAAT+GGG | + | chr3_4:70858308-70858327 | Msa0518940:intron | 50.0% | |
| AGCTCTCCTTCCCATTTGTG+GGG | - | chr3_4:70858321-70858340 | None:intergenic | 50.0% | |
| CAGCTCTCCTTCCCATTTGT+GGG | - | chr3_4:70858322-70858341 | None:intergenic | 50.0% | |
| CACTAATGGAGATGTCCCCA+CGG | + | chr3_4:70858382-70858401 | Msa0518940:CDS | 50.0% | |
| CAGGTTCGGATTGTCCTAGA+AGG | + | chr3_4:70858546-70858565 | Msa0518940:intron | 50.0% | |
| TCGGATTGTCCTAGAAGGTG+TGG | + | chr3_4:70858551-70858570 | Msa0518940:CDS | 50.0% | |
| GGGTCAGTGTATTATCCCGA+TGG | + | chr3_4:70858594-70858613 | Msa0518940:CDS | 50.0% | |
| TCCCGATGGTGAATCAGCAA+AGG | + | chr3_4:70858608-70858627 | Msa0518940:CDS | 50.0% | |
| CAGGTGGTTGAAGTTGTGAG+TGG | + | chr3_4:70859716-70859735 | Msa0518940:intron | 50.0% | |
| TGAAAGGTTAACCCGCCTCT+CGG | - | chr3_4:70859792-70859811 | None:intergenic | 50.0% | |
| ! | CGACGAGGATTGCCCATTTT+CGG | - | chr3_4:70859827-70859846 | None:intergenic | 50.0% |
| !!! | GCTGGTTTTTCATCTCGACG+AGG | - | chr3_4:70859842-70859861 | None:intergenic | 50.0% |
| TCCTTTGCTTCACGGGCATA+GGG | - | chr3_4:70859866-70859885 | None:intergenic | 50.0% | |
| TCTTGAGAACACGCCTCATC+GGG | + | chr3_4:70859888-70859907 | Msa0518940:CDS | 50.0% | |
| ! | AGGAAAGTTGGTCCTGTGGA+TGG | + | chr3_4:70860017-70860036 | Msa0518940:CDS | 50.0% |
| GGAACAACAGATCCATCCAC+AGG | - | chr3_4:70860032-70860051 | None:intergenic | 50.0% | |
| GGATGGATCTGTTGTTCCAC+CGG | + | chr3_4:70860034-70860053 | Msa0518940:CDS | 50.0% | |
| GATGGATCTGTTGTTCCACC+GGG | + | chr3_4:70860035-70860054 | Msa0518940:CDS | 50.0% | |
| CAGCTTTCCCAGAGGACAAT+AGG | - | chr3_4:70860100-70860119 | None:intergenic | 50.0% | |
| ! | TTGCTGACTAGCAGGAACAG+CGG | - | chr3_4:70860144-70860163 | None:intergenic | 50.0% |
| GTTCCTGCTAGTCAGCAAAC+TGG | + | chr3_4:70860146-70860165 | Msa0518940:CDS | 50.0% | |
| !! | AACCCAGTTTGCTGACTAGC+AGG | - | chr3_4:70860152-70860171 | None:intergenic | 50.0% |
| !! | CGTGCCATTTCTGGAAGGAA+AGG | + | chr3_4:70860278-70860297 | Msa0518940:CDS | 50.0% |
| GAAAGGGATCCATTCTGCCA+AGG | + | chr3_4:70860295-70860314 | Msa0518940:CDS | 50.0% | |
| ATGCATCACTGGAGGATCCT+TGG | - | chr3_4:70860315-70860334 | None:intergenic | 50.0% | |
| !! | GTCTTTGGCTTTCTTGGCTG+AGG | - | chr3_4:70860455-70860474 | None:intergenic | 50.0% |
| GGTGAAGGCAGTTCCTTCAG+GGG | + | chr3_4:70856305-70856324 | Msa0518940:CDS | 55.0% | |
| ACGACGATGCAATCCCCTGA+AGG | - | chr3_4:70856321-70856340 | None:intergenic | 55.0% | |
| GTAGCAGCCAATGCCAAGCT+TGG | + | chr3_4:70856348-70856367 | Msa0518940:CDS | 55.0% | |
| TTTCGACAGGCTCGTAGAGG+TGG | + | chr3_4:70856540-70856559 | Msa0518940:intron | 55.0% | |
| AGGCCTTGATCGTTGGAGCA+AGG | + | chr3_4:70857036-70857055 | Msa0518940:CDS | 55.0% | |
| ATCGTGCGATCCTACGTGCT+GGG | - | chr3_4:70857395-70857414 | None:intergenic | 55.0% | |
| GATCAAGGTCGTAGCACGGT+TGG | - | chr3_4:70857436-70857455 | None:intergenic | 55.0% | |
| CACGGATCAAGGTCGTAGCA+CGG | - | chr3_4:70857440-70857459 | None:intergenic | 55.0% | |
| GGCAAACACGACACGGATCA+AGG | - | chr3_4:70857451-70857470 | None:intergenic | 55.0% | |
| GCAAGCGACGGCTATGTTTG+TGG | + | chr3_4:70857618-70857637 | Msa0518940:intron | 55.0% | |
| GGTTCGTAAGAACCCACTCG+AGG | - | chr3_4:70857850-70857869 | None:intergenic | 55.0% | |
| GGTGAAGGGACGTAAGATCG+AGG | - | chr3_4:70857883-70857902 | None:intergenic | 55.0% | |
| GAGTTCCTACGTAGGATCGG+TGG | - | chr3_4:70857909-70857928 | None:intergenic | 55.0% | |
| CTAGCATCACCAAGGGCAGA+AGG | - | chr3_4:70858104-70858123 | None:intergenic | 55.0% | |
| GCAGCTCTCCTTCCCATTTG+TGG | - | chr3_4:70858323-70858342 | None:intergenic | 55.0% | |
| CGTGGGGACATCTCCATTAG+TGG | - | chr3_4:70858384-70858403 | None:intergenic | 55.0% | |
| ! | GGAACCTAGAGCTCCCCTTT+TGG | + | chr3_4:70858403-70858422 | Msa0518940:CDS | 55.0% |
| !! | CTAGAGCTCCCCTTTTGGAG+CGG | + | chr3_4:70858408-70858427 | Msa0518940:CDS | 55.0% |
| TCCCTATGCCCGTGAAGCAA+AGG | + | chr3_4:70859862-70859881 | Msa0518940:CDS | 55.0% | |
| CTCCTTTGCTTCACGGGCAT+AGG | - | chr3_4:70859867-70859886 | None:intergenic | 55.0% | |
| !! | ACTCTGGAATCAGCAGCTCC+CGG | - | chr3_4:70860056-70860075 | None:intergenic | 55.0% |
| ATCGCTGTCAGCTTTCCCAG+AGG | - | chr3_4:70860108-70860127 | None:intergenic | 55.0% | |
| ! | TGCTGACTAGCAGGAACAGC+GGG | - | chr3_4:70860143-70860162 | None:intergenic | 55.0% |
| !! | CAGCACGTGCCATTTCTGGA+AGG | + | chr3_4:70860273-70860292 | Msa0518940:CDS | 55.0% |
| CTGGAGGATCCTTGGCAGAA+TGG | - | chr3_4:70860307-70860326 | None:intergenic | 55.0% | |
| ACAGGCTCGTAGAGGTGGTG+TGG | + | chr3_4:70856545-70856564 | Msa0518940:intron | 60.0% | |
| AGAGTGCAGGGGCAGCAGAA+AGG | + | chr3_4:70856956-70856975 | Msa0518940:CDS | 60.0% | |
| CGCTGTCTTCCAAGGTAGCC+AGG | + | chr3_4:70857362-70857381 | Msa0518940:intron | 60.0% | |
| GGACTCGATCCTGGCTACCT+TGG | - | chr3_4:70857374-70857393 | None:intergenic | 60.0% | |
| TACGTGCTGGGACTCGATCC+TGG | - | chr3_4:70857383-70857402 | None:intergenic | 60.0% | |
| AGGATCGAGTCCCAGCACGT+AGG | + | chr3_4:70857382-70857401 | Msa0518940:intron | 60.0% | |
| GATCGTGCGATCCTACGTGC+TGG | - | chr3_4:70857396-70857415 | None:intergenic | 60.0% | |
| AGGTCGTAGCACGGTTGGGT+GGG | - | chr3_4:70857431-70857450 | None:intergenic | 60.0% | |
| AAGGTCGTAGCACGGTTGGG+TGG | - | chr3_4:70857432-70857451 | None:intergenic | 60.0% | |
| !! | AGGATCGGTGGGCTGGTGAA+GGG | - | chr3_4:70857897-70857916 | None:intergenic | 60.0% |
| !! | TAGGATCGGTGGGCTGGTGA+AGG | - | chr3_4:70857898-70857917 | None:intergenic | 60.0% |
| GCATCACCAAGGGCAGAAGG+TGG | - | chr3_4:70858101-70858120 | None:intergenic | 60.0% | |
| TCCTTCCCATTTGTGGGGCC+TGG | - | chr3_4:70858316-70858335 | None:intergenic | 60.0% | |
| !! | AGGGGAGCTCTAGGTTCCGT+GGG | - | chr3_4:70858401-70858420 | None:intergenic | 60.0% |
| !! | AAGGGGAGCTCTAGGTTCCG+TGG | - | chr3_4:70858402-70858421 | None:intergenic | 60.0% |
| CGCTCCAAAAGGGGAGCTCT+AGG | - | chr3_4:70858410-70858429 | None:intergenic | 60.0% | |
| GCTGAAGGCTGCAGAGCTTG+AGG | + | chr3_4:70859523-70859542 | Msa0518940:CDS | 60.0% | |
| ! | TCGGCCTGTGGACTACCGTA+TGG | - | chr3_4:70859773-70859792 | None:intergenic | 60.0% |
| TTCGTACTTGGCGCCCGATG+AGG | - | chr3_4:70859904-70859923 | None:intergenic | 60.0% | |
| TAGCAGGAACAGCGGGTGAC+GGG | - | chr3_4:70860136-70860155 | None:intergenic | 60.0% | |
| CTAGCAGGAACAGCGGGTGA+CGG | - | chr3_4:70860137-70860156 | None:intergenic | 60.0% | |
| !! | GCTGCAGCACGTGCCATTTC+TGG | + | chr3_4:70860269-70860288 | Msa0518940:CDS | 60.0% |
| CAGCGGCAGGGAACTCAGCA+TGG | + | chr3_4:70856271-70856290 | Msa0518940:CDS | 65.0% | |
| GGTCGTAGCACGGTTGGGTG+GGG | - | chr3_4:70857430-70857449 | None:intergenic | 65.0% | |
| CCTACGTAGGATCGGTGGGC+TGG | - | chr3_4:70857904-70857923 | None:intergenic | 65.0% | |
| CCAGCCCACCGATCCTACGT+AGG | + | chr3_4:70857901-70857920 | Msa0518940:intron | 65.0% | |
| GCCAGGCCCCACAAATGGGA+AGG | + | chr3_4:70858312-70858331 | Msa0518940:intron | 65.0% | |
| !! | GGGGAGCTCTAGGTTCCGTG+GGG | - | chr3_4:70858400-70858419 | None:intergenic | 65.0% |
| ACGGTAGTCCACAGGCCGAG+AGG | + | chr3_4:70859774-70859793 | Msa0518940:CDS | 65.0% | |
| GTAGTCCACAGGCCGAGAGG+CGG | + | chr3_4:70859777-70859796 | Msa0518940:CDS | 65.0% | |
| TAGTCCACAGGCCGAGAGGC+GGG | + | chr3_4:70859778-70859797 | Msa0518940:CDS | 65.0% | |
| TTAACCCGCCTCTCGGCCTG+TGG | - | chr3_4:70859785-70859804 | None:intergenic | 65.0% | |
| GCTTCACGGGCATAGGGAGC+TGG | - | chr3_4:70859860-70859879 | None:intergenic | 65.0% | |
| CTGGAATCAGCAGCTCCCGG+TGG | - | chr3_4:70860053-70860072 | None:intergenic | 65.0% | |
| AGCAGGAACAGCGGGTGACG+GGG | - | chr3_4:70860135-70860154 | None:intergenic | 65.0% | |
| ACAGATGCCTCGGCGGCACC+GGG | - | chr3_4:70858068-70858087 | None:intergenic | 70.0% | |
| GACAGATGCCTCGGCGGCAC+CGG | - | chr3_4:70858069-70858088 | None:intergenic | 70.0% | |
| !!! | GCAGGTTCCCGGTGCCGCCG+AGG | + | chr3_4:70858058-70858077 | Msa0518940:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 70856261 | 70860495 | 70856261 | ID=Msa0518940;Name=Msa0518940 |
| chr3_4 | mRNA | 70856261 | 70860495 | 70856261 | ID=Msa0518940-mRNA-1;Parent=Msa0518940;Name=Msa0518940-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|0|0|1|1|1|10|0|484 |
| chr3_4 | exon | 70856261 | 70856422 | 70856261 | ID=Msa0518940-mRNA-1:exon:19376;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70856549 | 70856623 | 70856549 | ID=Msa0518940-mRNA-1:exon:19377;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70856953 | 70857057 | 70856953 | ID=Msa0518940-mRNA-1:exon:19378;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70858150 | 70858242 | 70858150 | ID=Msa0518940-mRNA-1:exon:19379;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70858317 | 70858454 | 70858317 | ID=Msa0518940-mRNA-1:exon:19380;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70858549 | 70858656 | 70858549 | ID=Msa0518940-mRNA-1:exon:19381;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70859464 | 70859634 | 70859464 | ID=Msa0518940-mRNA-1:exon:19382;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70859719 | 70859916 | 70859719 | ID=Msa0518940-mRNA-1:exon:19383;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70859993 | 70860352 | 70859993 | ID=Msa0518940-mRNA-1:exon:19384;Parent=Msa0518940-mRNA-1 |
| chr3_4 | exon | 70860451 | 70860495 | 70860451 | ID=Msa0518940-mRNA-1:exon:19385;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70856261 | 70856422 | 70856261 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70856549 | 70856623 | 70856549 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70856953 | 70857057 | 70856953 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70858150 | 70858242 | 70858150 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70858317 | 70858454 | 70858317 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70858549 | 70858656 | 70858549 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70859464 | 70859634 | 70859464 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70859719 | 70859916 | 70859719 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70859993 | 70860352 | 70859993 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| chr3_4 | CDS | 70860451 | 70860495 | 70860451 | ID=Msa0518940-mRNA-1:cds;Parent=Msa0518940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
