AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518960 MtrunA17_Chr3g0131421 77.901 181 2 1 1 143 1 181 1.27e-82 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518960 AT5G07350.2 52.486 181 44 4 3 143 2 180 2.35e-50 172
Msa0518960 AT5G07350.1 52.486 181 44 4 3 143 2 180 2.79e-50 172
Msa0518960 AT5G61780.1 53.552 183 44 3 1 143 1 182 1.82e-45 158

Find 48 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGTGAAGGCAGTTCCTTC+AGG 0.315498 3_4:+70866658 Msa0518960:CDS
TTATGGTGGTTGCAGGTTCC+CGG 0.361651 3_4:+70868414 Msa0518960:intron
CTAATCAAAATTACCAATCT+AGG 0.382663 3_4:-70866769 None:intergenic
GACAGATGCCTCGGCGGCAC+CGG 0.383008 3_4:-70868433 None:intergenic
TTTGATGCCATGGGGTTGTT+AGG 0.395969 3_4:+70868495 Msa0518960:CDS
AGGGAACTCAGCATGGTATA+AGG 0.397205 3_4:+70866633 Msa0518960:CDS
GTCGTTGATTGCTCCTAGAT+TGG 0.421010 3_4:+70866756 Msa0518960:CDS
AATCTTCCACCTTCTGCCCT+TGG 0.444400 3_4:+70868459 Msa0518960:CDS
CTCAGGAAGAACACCAAGCT+TGG 0.452082 3_4:-70866716 None:intergenic
AGAATGGCAGCAACAGCGGC+AGG 0.489749 3_4:+70866613 None:intergenic
GTTCATGTAGGTTAGAGTGC+AGG 0.492702 3_4:+70867298 Msa0518960:intron
TGCTAGCAACTTTGATGCCA+TGG 0.498680 3_4:+70868485 Msa0518960:CDS
GATAAAGTGATTGATTTCTC+AGG 0.508537 3_4:-70866733 None:intergenic
TCTCTACTTTCCCAAGCAAA+TGG 0.510565 3_4:-70866928 None:intergenic
AGAGTGCAGGGGCAGCAGAA+AGG 0.513323 3_4:+70867311 Msa0518960:CDS
AAGAACACCAAGCTTGGCAT+TGG 0.514725 3_4:-70866710 None:intergenic
GTGTGGATGAGCCATTTGCT+TGG 0.515513 3_4:+70866917 Msa0518960:CDS
TGTGGATGAGCCATTTGCTT+GGG 0.520279 3_4:+70866918 Msa0518960:CDS
TTCATGTAGGTTAGAGTGCA+GGG 0.525977 3_4:+70867299 Msa0518960:intron
AAACCTTGCTCCAACGATCA+AGG 0.526683 3_4:-70867394 None:intergenic
ACAGATGCCTCGGCGGCACC+GGG 0.529023 3_4:-70868432 None:intergenic
AACAAGAAGGCCTTGATCGT+TGG 0.529748 3_4:+70867384 Msa0518960:CDS
GCTAGCAACTTTGATGCCAT+GGG 0.530441 3_4:+70868486 Msa0518960:CDS
GAAGAACAAGCTAAACAAGA+AGG 0.536768 3_4:+70867371 Msa0518960:CDS
GCAGGTTCCCGGTGCCGCCG+AGG 0.555609 3_4:+70868425 Msa0518960:intron
GTAGCAGCCAATGCCAAGCT+TGG 0.557380 3_4:+70866703 Msa0518960:CDS
AGGTGAAGGCAGTTCCTTCA+GGG 0.559959 3_4:+70866659 Msa0518960:CDS
CAGCGGCAGGGAACTCAGCA+TGG 0.572796 3_4:+70866626 Msa0518960:CDS
AGGCCTTGATCGTTGGAGCA+AGG 0.578203 3_4:+70867391 Msa0518960:CDS
GGGAAAGTAGAGAGTTTCTG+AGG 0.580411 3_4:+70866938 Msa0518960:CDS
ATGGTATAAGGCGAAGGTGA+AGG 0.582899 3_4:+70866645 Msa0518960:CDS
CTCAGCATGGTATAAGGCGA+AGG 0.589481 3_4:+70866639 Msa0518960:CDS
CTAGCATCACCAAGGGCAGA+AGG 0.592052 3_4:-70868468 None:intergenic
TTGAAGAATGGCAGCAACAG+CGG 0.596568 3_4:+70866609 None:intergenic
TTTCGACAGGCTCGTAGAGG+TGG 0.597529 3_4:+70866895 Msa0518960:intron
ACAGGCTCGTAGAGGTGGTG+TGG 0.598077 3_4:+70866900 Msa0518960:intron
AAGATTTCTGACAGATGCCT+CGG 0.599036 3_4:-70868442 None:intergenic
GCATCACCAAGGGCAGAAGG+TGG 0.633604 3_4:-70868465 None:intergenic
GGTGAAGGCAGTTCCTTCAG+GGG 0.639299 3_4:+70866660 Msa0518960:CDS
ACGACGATGCAATCCCCTGA+AGG 0.639907 3_4:-70866673 None:intergenic
GAATGGCAGCAACAGCGGCA+GGG 0.650272 3_4:+70866614 None:intergenic
AAATTTCGACAGGCTCGTAG+AGG 0.659807 3_4:+70866892 Msa0518960:intron
CAAAGTTGCTAGCATCACCA+AGG 0.671750 3_4:-70868476 None:intergenic
TCATGTAGGTTAGAGTGCAG+GGG 0.680210 3_4:+70867300 Msa0518960:intron
AAAGTTGCTAGCATCACCAA+GGG 0.681727 3_4:-70868475 None:intergenic
ACAAGTGCCTAACAACCCCA+TGG 0.691936 3_4:-70868502 None:intergenic
ATTTCTGACAGATGCCTCGG+CGG 0.697396 3_4:-70868439 None:intergenic
CTAGCAACTTTGATGCCATG+GGG 0.719985 3_4:+70868487 Msa0518960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATAATCAATTAAGTA+TGG + chr3_4:70867623-70867642 Msa0518960:intron 10.0%
!! AAAAAATTATATATCACTAT+GGG - chr3_4:70868066-70868085 None:intergenic 10.0%
!! TAAAAAATTATATATCACTA+TGG - chr3_4:70868067-70868086 None:intergenic 10.0%
!!! TAGTGATATATAATTTTTTA+AGG + chr3_4:70868067-70868086 Msa0518960:intron 10.0%
!! ATTTAATAATCAATTAAGTA+TGG + chr3_4:70867623-70867642 Msa0518960:intron 10.0%
!! AAAAAATTATATATCACTAT+GGG - chr3_4:70868066-70868085 None:intergenic 10.0%
!! TAAAAAATTATATATCACTA+TGG - chr3_4:70868067-70868086 None:intergenic 10.0%
!!! TAGTGATATATAATTTTTTA+AGG + chr3_4:70868067-70868086 Msa0518960:intron 10.0%
!!! ATTTATATGTTTTAATTGGA+TGG + chr3_4:70866861-70866880 Msa0518960:intron 15.0%
!!! TTTGCCAAATTTTTTTTTTT+TGG + chr3_4:70867832-70867851 Msa0518960:intron 15.0%
!!! AATCTTTTATATAGAGTATT+GGG + chr3_4:70868035-70868054 Msa0518960:intron 15.0%
!! AAAGTATATTATTAACTAAG+GGG - chr3_4:70868137-70868156 None:intergenic 15.0%
!!! GAAAGTATATTATTAACTAA+GGG - chr3_4:70868138-70868157 None:intergenic 15.0%
!!! AGAAAGTATATTATTAACTA+AGG - chr3_4:70868139-70868158 None:intergenic 15.0%
!!! ATTTATATGTTTTAATTGGA+TGG + chr3_4:70866861-70866880 Msa0518960:intron 15.0%
!!! TTTGCCAAATTTTTTTTTTT+TGG + chr3_4:70867832-70867851 Msa0518960:intron 15.0%
!!! AATCTTTTATATAGAGTATT+GGG + chr3_4:70868035-70868054 Msa0518960:intron 15.0%
!! AAAGTATATTATTAACTAAG+GGG - chr3_4:70868137-70868156 None:intergenic 15.0%
!!! GAAAGTATATTATTAACTAA+GGG - chr3_4:70868138-70868157 None:intergenic 15.0%
!!! AGAAAGTATATTATTAACTA+AGG - chr3_4:70868139-70868158 None:intergenic 15.0%
!!! TTTTGAATACTTCGTAATTA+AGG + chr3_4:70867434-70867453 Msa0518960:intron 20.0%
!! TTTGAATACTTCGTAATTAA+GGG + chr3_4:70867435-70867454 Msa0518960:intron 20.0%
!! TATGGCAATAATAATTTGAA+TGG + chr3_4:70867641-70867660 Msa0518960:intron 20.0%
!! CTGACCAAAAAAAAAAAATT+TGG - chr3_4:70867839-70867858 None:intergenic 20.0%
!!! CAAATTTTTTTTTTTTGGTC+AGG + chr3_4:70867837-70867856 Msa0518960:intron 20.0%
!!! CAATCTTTTATATAGAGTAT+TGG + chr3_4:70868034-70868053 Msa0518960:intron 20.0%
!! GGTATATTTAGTATTAATCT+GGG - chr3_4:70868094-70868113 None:intergenic 20.0%
!! AGGTATATTTAGTATTAATC+TGG - chr3_4:70868095-70868114 None:intergenic 20.0%
!!! GGTAAGAAAGTATAAAAAAA+AGG - chr3_4:70868115-70868134 None:intergenic 20.0%
!! AAGTATATTATTAACTAAGG+GGG - chr3_4:70868136-70868155 None:intergenic 20.0%
!! AAGATTTCAATGATATAAAC+AGG - chr3_4:70868376-70868395 None:intergenic 20.0%
!!! TTTTGAATACTTCGTAATTA+AGG + chr3_4:70867434-70867453 Msa0518960:intron 20.0%
!! TTTGAATACTTCGTAATTAA+GGG + chr3_4:70867435-70867454 Msa0518960:intron 20.0%
!! TATGGCAATAATAATTTGAA+TGG + chr3_4:70867641-70867660 Msa0518960:intron 20.0%
!! CTGACCAAAAAAAAAAAATT+TGG - chr3_4:70867839-70867858 None:intergenic 20.0%
!!! CAAATTTTTTTTTTTTGGTC+AGG + chr3_4:70867837-70867856 Msa0518960:intron 20.0%
!!! CAATCTTTTATATAGAGTAT+TGG + chr3_4:70868034-70868053 Msa0518960:intron 20.0%
!! GGTATATTTAGTATTAATCT+GGG - chr3_4:70868094-70868113 None:intergenic 20.0%
!! AGGTATATTTAGTATTAATC+TGG - chr3_4:70868095-70868114 None:intergenic 20.0%
!!! GGTAAGAAAGTATAAAAAAA+AGG - chr3_4:70868115-70868134 None:intergenic 20.0%
!! AAGTATATTATTAACTAAGG+GGG - chr3_4:70868136-70868155 None:intergenic 20.0%
!! AAGATTTCAATGATATAAAC+AGG - chr3_4:70868376-70868395 None:intergenic 20.0%
! CTAATCAAAATTACCAATCT+AGG - chr3_4:70866772-70866791 None:intergenic 25.0%
!!! ATTTAATGTGTTTTGAAGCA+AGG + chr3_4:70866796-70866815 Msa0518960:intron 25.0%
!!! GTTTTAATTGGATGGAATTT+TGG + chr3_4:70866869-70866888 Msa0518960:intron 25.0%
! ATTAAATGCAACATGTAATC+AGG - chr3_4:70867610-70867629 None:intergenic 25.0%
! TGGTCAATATTCTAAATTGT+CGG + chr3_4:70867661-70867680 Msa0518960:intron 25.0%
! TGATGTCGTGTAAATTTAAA+TGG - chr3_4:70868328-70868347 None:intergenic 25.0%
! CTAATCAAAATTACCAATCT+AGG - chr3_4:70866772-70866791 None:intergenic 25.0%
!!! ATTTAATGTGTTTTGAAGCA+AGG + chr3_4:70866796-70866815 Msa0518960:intron 25.0%
!!! GTTTTAATTGGATGGAATTT+TGG + chr3_4:70866869-70866888 Msa0518960:intron 25.0%
! ATTAAATGCAACATGTAATC+AGG - chr3_4:70867610-70867629 None:intergenic 25.0%
! TGGTCAATATTCTAAATTGT+CGG + chr3_4:70867661-70867680 Msa0518960:intron 25.0%
! TGATGTCGTGTAAATTTAAA+TGG - chr3_4:70868328-70868347 None:intergenic 25.0%
! GATAAAGTGATTGATTTCTC+AGG - chr3_4:70866736-70866755 None:intergenic 30.0%
GATCTGATATTGTATTGTTG+TGG + chr3_4:70867039-70867058 Msa0518960:intron 30.0%
! AGATTTGCATGTGATTCTTT+TGG + chr3_4:70867249-70867268 Msa0518960:intron 30.0%
!!! CTTTTTTGGCAGAATTGTTA+CGG + chr3_4:70867345-70867364 Msa0518960:CDS 30.0%
GAAGAAGTGAAAAGCTATAA+AGG + chr3_4:70867887-70867906 Msa0518960:intron 30.0%
! ATTTTCTCTTCATCATCTGT+CGG - chr3_4:70867918-70867937 None:intergenic 30.0%
AAATGGCTATAGAAGAAGAA+CGG + chr3_4:70867934-70867953 Msa0518960:intron 30.0%
! AAAGGTAGATCTAAGAGTTT+TGG + chr3_4:70867963-70867982 Msa0518960:intron 30.0%
!! TTTATATAGAGTATTGGGCT+AGG + chr3_4:70868040-70868059 Msa0518960:intron 30.0%
TGCGAGTGTATCATATATTA+TGG + chr3_4:70868397-70868416 Msa0518960:intron 30.0%
GAGTGTATCATATATTATGG+TGG + chr3_4:70868400-70868419 Msa0518960:intron 30.0%
! GATAAAGTGATTGATTTCTC+AGG - chr3_4:70866736-70866755 None:intergenic 30.0%
GATCTGATATTGTATTGTTG+TGG + chr3_4:70867039-70867058 Msa0518960:intron 30.0%
! AGATTTGCATGTGATTCTTT+TGG + chr3_4:70867249-70867268 Msa0518960:intron 30.0%
!!! CTTTTTTGGCAGAATTGTTA+CGG + chr3_4:70867345-70867364 Msa0518960:CDS 30.0%
GAAGAAGTGAAAAGCTATAA+AGG + chr3_4:70867887-70867906 Msa0518960:intron 30.0%
! ATTTTCTCTTCATCATCTGT+CGG - chr3_4:70867918-70867937 None:intergenic 30.0%
AAATGGCTATAGAAGAAGAA+CGG + chr3_4:70867934-70867953 Msa0518960:intron 30.0%
! AAAGGTAGATCTAAGAGTTT+TGG + chr3_4:70867963-70867982 Msa0518960:intron 30.0%
!! TTTATATAGAGTATTGGGCT+AGG + chr3_4:70868040-70868059 Msa0518960:intron 30.0%
TGCGAGTGTATCATATATTA+TGG + chr3_4:70868397-70868416 Msa0518960:intron 30.0%
GAGTGTATCATATATTATGG+TGG + chr3_4:70868400-70868419 Msa0518960:intron 30.0%
!! GGAATTTTGGAAATTTCGAC+AGG + chr3_4:70866882-70866901 Msa0518960:intron 35.0%
!! TTTCTGAGGAAGCTTTTGAT+AGG + chr3_4:70866952-70866971 Msa0518960:CDS 35.0%
CATTAACTGAGAGTTTGGAA+CGG + chr3_4:70867141-70867160 Msa0518960:intron 35.0%
! TTGGATTGCATTGTTGATTG+TGG + chr3_4:70867268-70867287 Msa0518960:intron 35.0%
! TGGATTGCATTGTTGATTGT+GGG + chr3_4:70867269-70867288 Msa0518960:intron 35.0%
CGTAACAATTCTGCCAAAAA+AGG - chr3_4:70867347-70867366 None:intergenic 35.0%
GAAGAACAAGCTAAACAAGA+AGG + chr3_4:70867371-70867390 Msa0518960:CDS 35.0%
ACATGTAATCAGGTCAACAT+CGG - chr3_4:70867600-70867619 None:intergenic 35.0%
AAAATTTGGCAAACACGACA+CGG - chr3_4:70867825-70867844 None:intergenic 35.0%
CGAAAACAAGAATGAGAAGA+AGG + chr3_4:70867862-70867881 Msa0518960:intron 35.0%
GACAGATGATGAAGAGAAAA+TGG + chr3_4:70867917-70867936 Msa0518960:intron 35.0%
TGTTTGTGGAGAGAATAACT+AGG + chr3_4:70867999-70868018 Msa0518960:intron 35.0%
GTTTGTGGAGAGAATAACTA+GGG + chr3_4:70868000-70868019 Msa0518960:intron 35.0%
! TTACAATTTTTCCCTCGAGT+GGG + chr3_4:70868202-70868221 Msa0518960:intron 35.0%
TTTACACGACATCATGATTC+TGG + chr3_4:70868334-70868353 Msa0518960:intron 35.0%
TCATATATTATGGTGGTTGC+AGG + chr3_4:70868407-70868426 Msa0518960:intron 35.0%
!! GGAATTTTGGAAATTTCGAC+AGG + chr3_4:70866882-70866901 Msa0518960:intron 35.0%
!! TTTCTGAGGAAGCTTTTGAT+AGG + chr3_4:70866952-70866971 Msa0518960:CDS 35.0%
CATTAACTGAGAGTTTGGAA+CGG + chr3_4:70867141-70867160 Msa0518960:intron 35.0%
! TTGGATTGCATTGTTGATTG+TGG + chr3_4:70867268-70867287 Msa0518960:intron 35.0%
! TGGATTGCATTGTTGATTGT+GGG + chr3_4:70867269-70867288 Msa0518960:intron 35.0%
CGTAACAATTCTGCCAAAAA+AGG - chr3_4:70867347-70867366 None:intergenic 35.0%
GAAGAACAAGCTAAACAAGA+AGG + chr3_4:70867371-70867390 Msa0518960:CDS 35.0%
ACATGTAATCAGGTCAACAT+CGG - chr3_4:70867600-70867619 None:intergenic 35.0%
AAAATTTGGCAAACACGACA+CGG - chr3_4:70867825-70867844 None:intergenic 35.0%
CGAAAACAAGAATGAGAAGA+AGG + chr3_4:70867862-70867881 Msa0518960:intron 35.0%
GACAGATGATGAAGAGAAAA+TGG + chr3_4:70867917-70867936 Msa0518960:intron 35.0%
TGTTTGTGGAGAGAATAACT+AGG + chr3_4:70867999-70868018 Msa0518960:intron 35.0%
GTTTGTGGAGAGAATAACTA+GGG + chr3_4:70868000-70868019 Msa0518960:intron 35.0%
! TTACAATTTTTCCCTCGAGT+GGG + chr3_4:70868202-70868221 Msa0518960:intron 35.0%
TTTACACGACATCATGATTC+TGG + chr3_4:70868334-70868353 Msa0518960:intron 35.0%
TCATATATTATGGTGGTTGC+AGG + chr3_4:70868407-70868426 Msa0518960:intron 35.0%
TCTCTACTTTCCCAAGCAAA+TGG - chr3_4:70866931-70866950 None:intergenic 40.0%
! GAGGAAGCTTTTGATAGGAA+AGG + chr3_4:70866957-70866976 Msa0518960:CDS 40.0%
CCAAACTCTCAGTTAATGGA+TGG - chr3_4:70867139-70867158 None:intergenic 40.0%
CCATCCATTAACTGAGAGTT+TGG + chr3_4:70867136-70867155 Msa0518960:intron 40.0%
CGTTCCAAACTCTCAGTTAA+TGG - chr3_4:70867143-70867162 None:intergenic 40.0%
!! GAGTTTGGAACGGTTTTTCT+TGG + chr3_4:70867151-70867170 Msa0518960:intron 40.0%
!! TGCTTGTTGTTTCTCAAGGA+TGG + chr3_4:70867191-70867210 Msa0518960:intron 40.0%
!! GCTTGTTGTTTCTCAAGGAT+GGG + chr3_4:70867192-70867211 Msa0518960:intron 40.0%
TTCATGTAGGTTAGAGTGCA+GGG + chr3_4:70867299-70867318 Msa0518960:intron 40.0%
!!! AGGAGAAGCAAGTCCTTTTT+TGG + chr3_4:70867331-70867350 Msa0518960:CDS 40.0%
CATGTAATCAGGTCAACATC+GGG - chr3_4:70867599-70867618 None:intergenic 40.0%
GAAGAAGAACGGTTGAACAA+AGG + chr3_4:70867945-70867964 Msa0518960:intron 40.0%
TGGAGAGAATAACTAGGGTT+TGG + chr3_4:70868005-70868024 Msa0518960:intron 40.0%
! GTTACAATTTTTCCCTCGAG+TGG + chr3_4:70868201-70868220 Msa0518960:intron 40.0%
TAAGATCGAGGAACGTAACA+CGG - chr3_4:70868238-70868257 None:intergenic 40.0%
TAGAAGACAGCAATGTAGTC+AGG - chr3_4:70868302-70868321 None:intergenic 40.0%
! ACGACATCATGATTCTGGAA+TGG + chr3_4:70868339-70868358 Msa0518960:intron 40.0%
AAGATTTCTGACAGATGCCT+CGG - chr3_4:70868445-70868464 None:intergenic 40.0%
AAAGTTGCTAGCATCACCAA+GGG - chr3_4:70868478-70868497 None:intergenic 40.0%
TCTCTACTTTCCCAAGCAAA+TGG - chr3_4:70866931-70866950 None:intergenic 40.0%
! GAGGAAGCTTTTGATAGGAA+AGG + chr3_4:70866957-70866976 Msa0518960:CDS 40.0%
CCAAACTCTCAGTTAATGGA+TGG - chr3_4:70867139-70867158 None:intergenic 40.0%
CCATCCATTAACTGAGAGTT+TGG + chr3_4:70867136-70867155 Msa0518960:intron 40.0%
CGTTCCAAACTCTCAGTTAA+TGG - chr3_4:70867143-70867162 None:intergenic 40.0%
!! GAGTTTGGAACGGTTTTTCT+TGG + chr3_4:70867151-70867170 Msa0518960:intron 40.0%
!! TGCTTGTTGTTTCTCAAGGA+TGG + chr3_4:70867191-70867210 Msa0518960:intron 40.0%
!! GCTTGTTGTTTCTCAAGGAT+GGG + chr3_4:70867192-70867211 Msa0518960:intron 40.0%
TTCATGTAGGTTAGAGTGCA+GGG + chr3_4:70867299-70867318 Msa0518960:intron 40.0%
!!! AGGAGAAGCAAGTCCTTTTT+TGG + chr3_4:70867331-70867350 Msa0518960:CDS 40.0%
CATGTAATCAGGTCAACATC+GGG - chr3_4:70867599-70867618 None:intergenic 40.0%
GAAGAAGAACGGTTGAACAA+AGG + chr3_4:70867945-70867964 Msa0518960:intron 40.0%
TGGAGAGAATAACTAGGGTT+TGG + chr3_4:70868005-70868024 Msa0518960:intron 40.0%
! GTTACAATTTTTCCCTCGAG+TGG + chr3_4:70868201-70868220 Msa0518960:intron 40.0%
TAAGATCGAGGAACGTAACA+CGG - chr3_4:70868238-70868257 None:intergenic 40.0%
TAGAAGACAGCAATGTAGTC+AGG - chr3_4:70868302-70868321 None:intergenic 40.0%
! ACGACATCATGATTCTGGAA+TGG + chr3_4:70868339-70868358 Msa0518960:intron 40.0%
AAGATTTCTGACAGATGCCT+CGG - chr3_4:70868445-70868464 None:intergenic 40.0%
AAAGTTGCTAGCATCACCAA+GGG - chr3_4:70868478-70868497 None:intergenic 40.0%
AGGGAACTCAGCATGGTATA+AGG + chr3_4:70866633-70866652 Msa0518960:CDS 45.0%
ATGGTATAAGGCGAAGGTGA+AGG + chr3_4:70866645-70866664 Msa0518960:CDS 45.0%
AAGAACACCAAGCTTGGCAT+TGG - chr3_4:70866713-70866732 None:intergenic 45.0%
! GTCGTTGATTGCTCCTAGAT+TGG + chr3_4:70866756-70866775 Msa0518960:CDS 45.0%
AAATTTCGACAGGCTCGTAG+AGG + chr3_4:70866892-70866911 Msa0518960:intron 45.0%
TGTGGATGAGCCATTTGCTT+GGG + chr3_4:70866918-70866937 Msa0518960:CDS 45.0%
GGGAAAGTAGAGAGTTTCTG+AGG + chr3_4:70866938-70866957 Msa0518960:CDS 45.0%
! CTCTCAGTTAATGGATGGCA+CGG - chr3_4:70867134-70867153 None:intergenic 45.0%
!! GCACTGCTTGTTGTTTCTCA+AGG + chr3_4:70867187-70867206 Msa0518960:intron 45.0%
TGTTTCTCAAGGATGGGCAA+AGG + chr3_4:70867198-70867217 Msa0518960:intron 45.0%
GTTCATGTAGGTTAGAGTGC+AGG + chr3_4:70867298-70867317 Msa0518960:intron 45.0%
TCATGTAGGTTAGAGTGCAG+GGG + chr3_4:70867300-70867319 Msa0518960:intron 45.0%
AACAAGAAGGCCTTGATCGT+TGG + chr3_4:70867384-70867403 Msa0518960:CDS 45.0%
AAACCTTGCTCCAACGATCA+AGG - chr3_4:70867397-70867416 None:intergenic 45.0%
CAACTGAGGTGCATTGTGTT+TGG + chr3_4:70867511-70867530 Msa0518960:intron 45.0%
TCTATAGACGCTGTCTTCCA+AGG + chr3_4:70867721-70867740 Msa0518960:intron 45.0%
!! CTAAGAGTTTTGGCAAGCGA+CGG + chr3_4:70867973-70867992 Msa0518960:intron 45.0%
AACGAGTTCCTACGTAGGAT+CGG - chr3_4:70868279-70868298 None:intergenic 45.0%
CAAAGTTGCTAGCATCACCA+AGG - chr3_4:70868479-70868498 None:intergenic 45.0%
TGCTAGCAACTTTGATGCCA+TGG + chr3_4:70868485-70868504 Msa0518960:CDS 45.0%
GCTAGCAACTTTGATGCCAT+GGG + chr3_4:70868486-70868505 Msa0518960:CDS 45.0%
CTAGCAACTTTGATGCCATG+GGG + chr3_4:70868487-70868506 Msa0518960:CDS 45.0%
TTTGATGCCATGGGGTTGTT+AGG + chr3_4:70868495-70868514 Msa0518960:CDS 45.0%
AGGGAACTCAGCATGGTATA+AGG + chr3_4:70866633-70866652 Msa0518960:CDS 45.0%
ATGGTATAAGGCGAAGGTGA+AGG + chr3_4:70866645-70866664 Msa0518960:CDS 45.0%
AAGAACACCAAGCTTGGCAT+TGG - chr3_4:70866713-70866732 None:intergenic 45.0%
! GTCGTTGATTGCTCCTAGAT+TGG + chr3_4:70866756-70866775 Msa0518960:CDS 45.0%
AAATTTCGACAGGCTCGTAG+AGG + chr3_4:70866892-70866911 Msa0518960:intron 45.0%
TGTGGATGAGCCATTTGCTT+GGG + chr3_4:70866918-70866937 Msa0518960:CDS 45.0%
GGGAAAGTAGAGAGTTTCTG+AGG + chr3_4:70866938-70866957 Msa0518960:CDS 45.0%
! CTCTCAGTTAATGGATGGCA+CGG - chr3_4:70867134-70867153 None:intergenic 45.0%
!! GCACTGCTTGTTGTTTCTCA+AGG + chr3_4:70867187-70867206 Msa0518960:intron 45.0%
TGTTTCTCAAGGATGGGCAA+AGG + chr3_4:70867198-70867217 Msa0518960:intron 45.0%
GTTCATGTAGGTTAGAGTGC+AGG + chr3_4:70867298-70867317 Msa0518960:intron 45.0%
TCATGTAGGTTAGAGTGCAG+GGG + chr3_4:70867300-70867319 Msa0518960:intron 45.0%
AACAAGAAGGCCTTGATCGT+TGG + chr3_4:70867384-70867403 Msa0518960:CDS 45.0%
AAACCTTGCTCCAACGATCA+AGG - chr3_4:70867397-70867416 None:intergenic 45.0%
CAACTGAGGTGCATTGTGTT+TGG + chr3_4:70867511-70867530 Msa0518960:intron 45.0%
TCTATAGACGCTGTCTTCCA+AGG + chr3_4:70867721-70867740 Msa0518960:intron 45.0%
!! CTAAGAGTTTTGGCAAGCGA+CGG + chr3_4:70867973-70867992 Msa0518960:intron 45.0%
AACGAGTTCCTACGTAGGAT+CGG - chr3_4:70868279-70868298 None:intergenic 45.0%
CAAAGTTGCTAGCATCACCA+AGG - chr3_4:70868479-70868498 None:intergenic 45.0%
TGCTAGCAACTTTGATGCCA+TGG + chr3_4:70868485-70868504 Msa0518960:CDS 45.0%
GCTAGCAACTTTGATGCCAT+GGG + chr3_4:70868486-70868505 Msa0518960:CDS 45.0%
CTAGCAACTTTGATGCCATG+GGG + chr3_4:70868487-70868506 Msa0518960:CDS 45.0%
TTTGATGCCATGGGGTTGTT+AGG + chr3_4:70868495-70868514 Msa0518960:CDS 45.0%
!!! TATAATTTATATGTTTTAAT+TGG + chr3_4:70866857-70866876 Msa0518960:intron 5.0%
!!! TATAATTTATATGTTTTAAT+TGG + chr3_4:70866857-70866876 Msa0518960:intron 5.0%
CTCAGCATGGTATAAGGCGA+AGG + chr3_4:70866639-70866658 Msa0518960:CDS 50.0%
AAGGTGAAGGCAGTTCCTTC+AGG + chr3_4:70866658-70866677 Msa0518960:CDS 50.0%
AGGTGAAGGCAGTTCCTTCA+GGG + chr3_4:70866659-70866678 Msa0518960:CDS 50.0%
CTCAGGAAGAACACCAAGCT+TGG - chr3_4:70866719-70866738 None:intergenic 50.0%
GTGTGGATGAGCCATTTGCT+TGG + chr3_4:70866917-70866936 Msa0518960:CDS 50.0%
TGTGGGCTTGTCGTTCATGT+AGG + chr3_4:70867286-70867305 Msa0518960:intron 50.0%
TCGTTGGAGCAAGGTTTGTC+TGG + chr3_4:70867400-70867419 Msa0518960:intron 50.0%
!! CCTCAGTTGCAAGAGCATCA+AGG - chr3_4:70867500-70867519 None:intergenic 50.0%
CCTTGATGCTCTTGCAACTG+AGG + chr3_4:70867497-70867516 Msa0518960:intron 50.0%
ATCAAGGTCGTAGCACGGTT+GGG - chr3_4:70867802-70867821 None:intergenic 50.0%
GTTCGTAAGAACCCACTCGA+GGG - chr3_4:70868216-70868235 None:intergenic 50.0%
AGTTCCTACGTAGGATCGGT+GGG - chr3_4:70868275-70868294 None:intergenic 50.0%
TCAGGAACGAGTTCCTACGT+AGG - chr3_4:70868284-70868303 None:intergenic 50.0%
TTATGGTGGTTGCAGGTTCC+CGG + chr3_4:70868414-70868433 Msa0518960:intron 50.0%
ATTTCTGACAGATGCCTCGG+CGG - chr3_4:70868442-70868461 None:intergenic 50.0%
AATCTTCCACCTTCTGCCCT+TGG + chr3_4:70868459-70868478 Msa0518960:CDS 50.0%
ACAAGTGCCTAACAACCCCA+TGG - chr3_4:70868505-70868524 None:intergenic 50.0%
CTCAGCATGGTATAAGGCGA+AGG + chr3_4:70866639-70866658 Msa0518960:CDS 50.0%
AAGGTGAAGGCAGTTCCTTC+AGG + chr3_4:70866658-70866677 Msa0518960:CDS 50.0%
AGGTGAAGGCAGTTCCTTCA+GGG + chr3_4:70866659-70866678 Msa0518960:CDS 50.0%
CTCAGGAAGAACACCAAGCT+TGG - chr3_4:70866719-70866738 None:intergenic 50.0%
GTGTGGATGAGCCATTTGCT+TGG + chr3_4:70866917-70866936 Msa0518960:CDS 50.0%
TGTGGGCTTGTCGTTCATGT+AGG + chr3_4:70867286-70867305 Msa0518960:intron 50.0%
TCGTTGGAGCAAGGTTTGTC+TGG + chr3_4:70867400-70867419 Msa0518960:intron 50.0%
!! CCTCAGTTGCAAGAGCATCA+AGG - chr3_4:70867500-70867519 None:intergenic 50.0%
CCTTGATGCTCTTGCAACTG+AGG + chr3_4:70867497-70867516 Msa0518960:intron 50.0%
ATCAAGGTCGTAGCACGGTT+GGG - chr3_4:70867802-70867821 None:intergenic 50.0%
GTTCGTAAGAACCCACTCGA+GGG - chr3_4:70868216-70868235 None:intergenic 50.0%
AGTTCCTACGTAGGATCGGT+GGG - chr3_4:70868275-70868294 None:intergenic 50.0%
TCAGGAACGAGTTCCTACGT+AGG - chr3_4:70868284-70868303 None:intergenic 50.0%
TTATGGTGGTTGCAGGTTCC+CGG + chr3_4:70868414-70868433 Msa0518960:intron 50.0%
ATTTCTGACAGATGCCTCGG+CGG - chr3_4:70868442-70868461 None:intergenic 50.0%
AATCTTCCACCTTCTGCCCT+TGG + chr3_4:70868459-70868478 Msa0518960:CDS 50.0%
ACAAGTGCCTAACAACCCCA+TGG - chr3_4:70868505-70868524 None:intergenic 50.0%
GGTGAAGGCAGTTCCTTCAG+GGG + chr3_4:70866660-70866679 Msa0518960:CDS 55.0%
ACGACGATGCAATCCCCTGA+AGG - chr3_4:70866676-70866695 None:intergenic 55.0%
GTAGCAGCCAATGCCAAGCT+TGG + chr3_4:70866703-70866722 Msa0518960:CDS 55.0%
TTTCGACAGGCTCGTAGAGG+TGG + chr3_4:70866895-70866914 Msa0518960:intron 55.0%
AGGCCTTGATCGTTGGAGCA+AGG + chr3_4:70867391-70867410 Msa0518960:CDS 55.0%
ATCGTGCGATCCTACGTGCT+GGG - chr3_4:70867762-70867781 None:intergenic 55.0%
GATCAAGGTCGTAGCACGGT+TGG - chr3_4:70867803-70867822 None:intergenic 55.0%
CACGGATCAAGGTCGTAGCA+CGG - chr3_4:70867807-70867826 None:intergenic 55.0%
GGCAAACACGACACGGATCA+AGG - chr3_4:70867818-70867837 None:intergenic 55.0%
GCAAGCGACGGCTATGTTTG+TGG + chr3_4:70867985-70868004 Msa0518960:intron 55.0%
GGTTCGTAAGAACCCACTCG+AGG - chr3_4:70868217-70868236 None:intergenic 55.0%
GGTGAAGGGACGTAAGATCG+AGG - chr3_4:70868250-70868269 None:intergenic 55.0%
GAGTTCCTACGTAGGATCGG+TGG - chr3_4:70868276-70868295 None:intergenic 55.0%
CTAGCATCACCAAGGGCAGA+AGG - chr3_4:70868471-70868490 None:intergenic 55.0%
GGTGAAGGCAGTTCCTTCAG+GGG + chr3_4:70866660-70866679 Msa0518960:CDS 55.0%
ACGACGATGCAATCCCCTGA+AGG - chr3_4:70866676-70866695 None:intergenic 55.0%
GTAGCAGCCAATGCCAAGCT+TGG + chr3_4:70866703-70866722 Msa0518960:CDS 55.0%
TTTCGACAGGCTCGTAGAGG+TGG + chr3_4:70866895-70866914 Msa0518960:intron 55.0%
AGGCCTTGATCGTTGGAGCA+AGG + chr3_4:70867391-70867410 Msa0518960:CDS 55.0%
ATCGTGCGATCCTACGTGCT+GGG - chr3_4:70867762-70867781 None:intergenic 55.0%
GATCAAGGTCGTAGCACGGT+TGG - chr3_4:70867803-70867822 None:intergenic 55.0%
CACGGATCAAGGTCGTAGCA+CGG - chr3_4:70867807-70867826 None:intergenic 55.0%
GGCAAACACGACACGGATCA+AGG - chr3_4:70867818-70867837 None:intergenic 55.0%
GCAAGCGACGGCTATGTTTG+TGG + chr3_4:70867985-70868004 Msa0518960:intron 55.0%
GGTTCGTAAGAACCCACTCG+AGG - chr3_4:70868217-70868236 None:intergenic 55.0%
GGTGAAGGGACGTAAGATCG+AGG - chr3_4:70868250-70868269 None:intergenic 55.0%
GAGTTCCTACGTAGGATCGG+TGG - chr3_4:70868276-70868295 None:intergenic 55.0%
CTAGCATCACCAAGGGCAGA+AGG - chr3_4:70868471-70868490 None:intergenic 55.0%
ACAGGCTCGTAGAGGTGGTG+TGG + chr3_4:70866900-70866919 Msa0518960:intron 60.0%
AGAGTGCAGGGGCAGCAGAA+AGG + chr3_4:70867311-70867330 Msa0518960:CDS 60.0%
CGCTGTCTTCCAAGGTAGCC+AGG + chr3_4:70867729-70867748 Msa0518960:intron 60.0%
GGACTCGATCCTGGCTACCT+TGG - chr3_4:70867741-70867760 None:intergenic 60.0%
TACGTGCTGGGACTCGATCC+TGG - chr3_4:70867750-70867769 None:intergenic 60.0%
AGGATCGAGTCCCAGCACGT+AGG + chr3_4:70867749-70867768 Msa0518960:intron 60.0%
GATCGTGCGATCCTACGTGC+TGG - chr3_4:70867763-70867782 None:intergenic 60.0%
AGGTCGTAGCACGGTTGGGT+GGG - chr3_4:70867798-70867817 None:intergenic 60.0%
AAGGTCGTAGCACGGTTGGG+TGG - chr3_4:70867799-70867818 None:intergenic 60.0%
!! AGGATCGGTGGGCTGGTGAA+GGG - chr3_4:70868264-70868283 None:intergenic 60.0%
!! TAGGATCGGTGGGCTGGTGA+AGG - chr3_4:70868265-70868284 None:intergenic 60.0%
GCATCACCAAGGGCAGAAGG+TGG - chr3_4:70868468-70868487 None:intergenic 60.0%
ACAGGCTCGTAGAGGTGGTG+TGG + chr3_4:70866900-70866919 Msa0518960:intron 60.0%
AGAGTGCAGGGGCAGCAGAA+AGG + chr3_4:70867311-70867330 Msa0518960:CDS 60.0%
CGCTGTCTTCCAAGGTAGCC+AGG + chr3_4:70867729-70867748 Msa0518960:intron 60.0%
GGACTCGATCCTGGCTACCT+TGG - chr3_4:70867741-70867760 None:intergenic 60.0%
TACGTGCTGGGACTCGATCC+TGG - chr3_4:70867750-70867769 None:intergenic 60.0%
AGGATCGAGTCCCAGCACGT+AGG + chr3_4:70867749-70867768 Msa0518960:intron 60.0%
GATCGTGCGATCCTACGTGC+TGG - chr3_4:70867763-70867782 None:intergenic 60.0%
AGGTCGTAGCACGGTTGGGT+GGG - chr3_4:70867798-70867817 None:intergenic 60.0%
AAGGTCGTAGCACGGTTGGG+TGG - chr3_4:70867799-70867818 None:intergenic 60.0%
!! AGGATCGGTGGGCTGGTGAA+GGG - chr3_4:70868264-70868283 None:intergenic 60.0%
!! TAGGATCGGTGGGCTGGTGA+AGG - chr3_4:70868265-70868284 None:intergenic 60.0%
GCATCACCAAGGGCAGAAGG+TGG - chr3_4:70868468-70868487 None:intergenic 60.0%
CAGCGGCAGGGAACTCAGCA+TGG + chr3_4:70866626-70866645 Msa0518960:CDS 65.0%
GGTCGTAGCACGGTTGGGTG+GGG - chr3_4:70867797-70867816 None:intergenic 65.0%
CCTACGTAGGATCGGTGGGC+TGG - chr3_4:70868271-70868290 None:intergenic 65.0%
CCAGCCCACCGATCCTACGT+AGG + chr3_4:70868268-70868287 Msa0518960:intron 65.0%
CAGCGGCAGGGAACTCAGCA+TGG + chr3_4:70866626-70866645 Msa0518960:CDS 65.0%
GGTCGTAGCACGGTTGGGTG+GGG - chr3_4:70867797-70867816 None:intergenic 65.0%
CCTACGTAGGATCGGTGGGC+TGG - chr3_4:70868271-70868290 None:intergenic 65.0%
CCAGCCCACCGATCCTACGT+AGG + chr3_4:70868268-70868287 Msa0518960:intron 65.0%
ACAGATGCCTCGGCGGCACC+GGG - chr3_4:70868435-70868454 None:intergenic 70.0%
GACAGATGCCTCGGCGGCAC+CGG - chr3_4:70868436-70868455 None:intergenic 70.0%
ACAGATGCCTCGGCGGCACC+GGG - chr3_4:70868435-70868454 None:intergenic 70.0%
GACAGATGCCTCGGCGGCAC+CGG - chr3_4:70868436-70868455 None:intergenic 70.0%
!!! GCAGGTTCCCGGTGCCGCCG+AGG + chr3_4:70868425-70868444 Msa0518960:intron 80.0%
!!! GCAGGTTCCCGGTGCCGCCG+AGG + chr3_4:70868425-70868444 Msa0518960:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70866616 70868527 70866616 ID=Msa0518960;Name=Msa0518960
chr3_4 mRNA 70866616 70868527 70866616 ID=Msa0518960-mRNA-1;Parent=Msa0518960;Name=Msa0518960-mRNA-1;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|1|1|4|0|146
chr3_4 exon 70866616 70866777 70866616 ID=Msa0518960-mRNA-1:exon:19386;Parent=Msa0518960-mRNA-1
chr3_4 exon 70866904 70866978 70866904 ID=Msa0518960-mRNA-1:exon:19387;Parent=Msa0518960-mRNA-1
chr3_4 exon 70867308 70867412 70867308 ID=Msa0518960-mRNA-1:exon:19388;Parent=Msa0518960-mRNA-1
chr3_4 exon 70868429 70868527 70868429 ID=Msa0518960-mRNA-1:exon:19389;Parent=Msa0518960-mRNA-1
chr3_4 CDS 70866616 70866777 70866616 ID=Msa0518960-mRNA-1:cds;Parent=Msa0518960-mRNA-1
chr3_4 CDS 70866904 70866978 70866904 ID=Msa0518960-mRNA-1:cds;Parent=Msa0518960-mRNA-1
chr3_4 CDS 70867308 70867412 70867308 ID=Msa0518960-mRNA-1:cds;Parent=Msa0518960-mRNA-1
chr3_4 CDS 70868429 70868527 70868429 ID=Msa0518960-mRNA-1:cds;Parent=Msa0518960-mRNA-1
Gene Sequence

>Msa0518960

ATGGCAGCAACAGCGGCAGGGAACTCAGCATGGTATAAGGCGAAGGTGAAGGCAGTTCCTTCAGGGGATTGCATCGTCGTTGTATCTGTAGCAGCCAATGCCAAGCTTGGTGTTCTTCCTGAGAAATCAATCACTTTATCGTCGTTGATTGCTCCTAGATTGGCTCGTAGAGGTGGTGTGGATGAGCCATTTGCTTGGGAAAGTAGAGAGTTTCTGAGGAAGCTTTTGATAGGAAAGGTTAGAGTGCAGGGGCAGCAGAAAGGAGAAGCAAGTCCTTTTTTGGCAGAATTGTTACGGTTAGAAGAACAAGCTAAACAAGAAGGCCTTGATCGTTGGAGCAAGGTTCCCGGTGCCGCCGAGGCATCTGTCAGAAATCTTCCACCTTCTGCCCTTGGTGATGCTAGCAACTTTGATGCCATGGGGTTGTTAGGCACTTGTTGA

Protein sequence

>Msa0518960

MAATAAGNSAWYKAKVKAVPSGDCIVVVSVAANAKLGVLPEKSITLSSLIAPRLARRGGVDEPFAWESREFLRKLLIGKVRVQGQQKGEASPFLAELLRLEEQAKQEGLDRWSKVPGAAEASVRNLPPSALGDASNFDAMGLLGTC*