AlfalfaGEDB | Msa0522560

M. sativa cultivar zhongmu-4 / Msa0522560

KEGG: -
GO: -
PFAM: PF14778.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522560	XP_039688083.1	95.297	489	22	1	1	489	1	488	0.0	933

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522560	sp\|Q4PJX1\|ODR4_MOUSE	26.667	405	213	17	26	402	24	372	2.77e-21	99.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522560	A0A396J263	95.297	489	22	1	1	489	1	488	0.0	933

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0279210	Msa0522560	0.812263	4.629875e-51	-8.615850e-47
Msa0318970	Msa0522560	0.801224	9.961244e-49	-8.615850e-47
Msa0478450	Msa0522560	0.859339	4.429683e-63	-8.615850e-47
Msa0522560	Msa0864470	0.815447	9.202058e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522560	MtrunA17_Chr3g0141121	95.297	489	22	1	1	489	1	488	0.0	933

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522560	AT3G28670.3	51.527	491	229	7	1	485	1	488	2.72e-167	481
Msa0522560	AT3G28670.1	51.527	491	229	7	1	485	1	488	2.72e-167	481
Msa0522560	AT3G28670.2	51.527	491	229	7	1	485	52	539	2.53e-166	481

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Find 137 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTAGAGACATCAGT+TGG	0.571898	3_4:+75795715	None:intergenic
AAACTCTTCTAGGAAAAGGA+AGG	0.609411	3_4:+75795922	None:intergenic
AAACTTTAGAGCGGCAGGTA+TGG	0.450259	3_4:-75795363	Msa0522560:three_prime_UTR
AAAGAGAAGAAGAATCGGGT+TGG	0.571507	3_4:+75800958	None:intergenic
AAATAACATCGAAAATCGAT+TGG	0.486498	3_4:+75795304	None:intergenic
AAATTTGTTATGGCCCGAGA+AGG	0.596928	3_4:-75800422	Msa0522560:intron
AACCCGATTCCAATTGGTTG+AGG	0.512410	3_4:-75801165	Msa0522560:CDS
AACTGATGTCTCTACAATTT+TGG	0.135607	3_4:-75795713	Msa0522560:CDS
AACTTGTGCTGCATTTATTG+AGG	0.482705	3_4:-75796935	Msa0522560:intron
AACTTTAGAGCGGCAGGTAT+GGG	0.493798	3_4:-75795362	Msa0522560:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAATTAATGCTGACAT+TGG	+	chr3_4:75795249-75795268	None:intergenic	30.0%
TTAATTTCTTATACTCCCTC+CGG	+	chr3_4:75795466-75795485	None:intergenic	30.0%
AAAAAAACTAGAGTTAGAGC+AGG	-	chr3_4:75795500-75795519	Msa0522560:CDS	30.0%
ATGTAAAGAGAAGAAGAATC+GGG	+	chr3_4:75795804-75795823	None:intergenic	30.0%
GATGTAAAGAGAAGAAGAAT+CGG	+	chr3_4:75795805-75795824	None:intergenic	30.0%
TTCTTCTCTTTACATCGATA+AGG	-	chr3_4:75795809-75795828	Msa0522560:intron	30.0%
TCTTTACATCGATAAGGATT+GGG	-	chr3_4:75795815-75795834	Msa0522560:intron	30.0%
CATTAAGGTTGAATTCTTGA+AGG	+	chr3_4:75795925-75795944	None:intergenic	30.0%
GTATGCACAACTTTAATCTT+AGG	-	chr3_4:75796569-75796588	Msa0522560:intron	30.0%
TAGCAAAGTTGTTAATTCTC+TGG	-	chr3_4:75796907-75796926	Msa0522560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	75795152	75801625	75795152	ID=Msa0522560;Name=Msa0522560
chr3_4	mRNA	75795152	75801625	75795152	ID=Msa0522560-mRNA-1;Parent=Msa0522560;Name=Msa0522560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=139\|1\|1\|1\|0.88\|0.8\|10\|334\|489
chr3_4	exon	75795152	75795779	75795152	ID=Msa0522560-mRNA-1:exon:21760;Parent=Msa0522560-mRNA-1
chr3_4	exon	75795860	75795956	75795860	ID=Msa0522560-mRNA-1:exon:21759;Parent=Msa0522560-mRNA-1
chr3_4	exon	75796936	75797090	75796936	ID=Msa0522560-mRNA-1:exon:21758;Parent=Msa0522560-mRNA-1
chr3_4	exon	75797319	75797428	75797319	ID=Msa0522560-mRNA-1:exon:21757;Parent=Msa0522560-mRNA-1
chr3_4	exon	75797576	75797660	75797576	ID=Msa0522560-mRNA-1:exon:21756;Parent=Msa0522560-mRNA-1
chr3_4	exon	75799970	75800090	75799970	ID=Msa0522560-mRNA-1:exon:21755;Parent=Msa0522560-mRNA-1
chr3_4	exon	75800187	75800315	75800187	ID=Msa0522560-mRNA-1:exon:21754;Parent=Msa0522560-mRNA-1
chr3_4	exon	75800423	75800511	75800423	ID=Msa0522560-mRNA-1:exon:21753;Parent=Msa0522560-mRNA-1
chr3_4	exon	75800824	75801308	75800824	ID=Msa0522560-mRNA-1:exon:21752;Parent=Msa0522560-mRNA-1
chr3_4	exon	75801582	75801625	75801582	ID=Msa0522560-mRNA-1:exon:21751;Parent=Msa0522560-mRNA-1
chr3_4	five_prime_UTR	75801582	75801625	75801582	ID=Msa0522560-mRNA-1:five_prime_utr;Parent=Msa0522560-mRNA-1
chr3_4	five_prime_UTR	75801214	75801308	75801214	ID=Msa0522560-mRNA-1:five_prime_utr;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75800824	75801213	75800824	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75800423	75800511	75800423	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75800187	75800315	75800187	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75799970	75800090	75799970	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75797576	75797660	75797576	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75797319	75797428	75797319	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75796936	75797090	75796936	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75795860	75795956	75795860	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	CDS	75795486	75795779	75795486	ID=Msa0522560-mRNA-1:cds;Parent=Msa0522560-mRNA-1
chr3_4	three_prime_UTR	75795152	75795485	75795152	ID=Msa0522560-mRNA-1:three_prime_utr;Parent=Msa0522560-mRNA-1

Gene Sequence

>Msa0522560

ATGGTGAAAGGCGTTGTCGGAGAAGAAACCCGATTCCAATTGGTTGAGGATCGCCTCACCAAATCTTCTCCTCCTCCAGCTGAGGTGGGTCTACTGATAGGAAAATTCAGCTCCGCATTGGATCGCGTCTTTCTCTTCGATTTGATTCCAACTCCTCCCAATGATTCCGGTGAACCCGCTTCTTCCATCATCCAACCCGATAAGAAAACTGTTTCCAAATCCAAATCTCAAACCCAACCCGATTCTTCTTCTCTTTACATCGATAAGGATTGGGTTTCCGAACACGCTCGTCAGGTTTCTAGAATGTTAGTCGGTGGCATTAAGGTTGTTGGTGTCTATGTTTGGGTCAATGATAATGCCTTCAAGAATTCAACCTTAATGCTTTGCCAGACTGTGAAGGGAGTTGCTGAAGCAGCACCGGCTTCGGAGGTTAACTGGGATGAAAGACTACTTCTGCAAATTTGTTATGGCCCGAGAAGGTGGAATTGTAGAAACTGTTCGCTATCTTCAAATATTACATCTAGTAGTCTACGCCCTTGTGATTTTAAAATGGGGAAGGTCTTAAGTTCTTTTCAAACTTTTAGGTGTATGCACAACTTTAATCTTAGGTTACCCATATTGCATGATGGTTCATCCAAGTTTCAGACATTGAGTGACGTTCTTCATCATGCAATATCTGTTCATGCCAAAGAGCTGGCAGATGCAAAAGCCCTGATCGACGGTAAATTGGTTCTTGATAATGAGCCATGCTCGTTAGAAGGTGTGCATGAAGTTGAATTGCTTATACCATTCTTGAATGATAGTTCTATTGAAGCATACAGCCAAAGAGATGTTTCTGGTATTCTTTCCTTTGGTGGCGCCATATGTTCTTTTGCGTATCTGAATTCAAAAGAGCCAATTTCACAAGTTGTCACTGATATAAAGGGAGATATCATTACAAGCCTGCAAAGTCGACTGGATATAATCCGTGATGAGACAGATGTTGATTCAGGTAACCATCATGATGTTGGAAGGCAAGTAAGCGAGGACGATGTATCAGTTGAAAAGCCTGTTTCCCAACTTGTGCTGCATTTATTGAGAAAAGAATGCAGCCTTCCTTTTCCTAGAAGAGTTTTTGCACCGTGGTTAGCTGGGACGTATGTGTGTGATTACTTGCAGCCTTCTGAGACTGTTGAGGTTTTAAAAGATCACTGTATGGAGTTGTTATCCATGAAAGCTCCAACTGATGTCTCTACAATTTTGGAGCCAGAAAAAGAAGTCATATCTTTCAGAACTAAATCTTTTTGGGATGTAGCAGTGCCCTCCTATTCAGAAATTCACCTCAAAGAAGACAAGATGAAACTTGATGGCAGAGGAGAGAGTTCTAGTGATAAACTCCTGAAGCCAGGTCACATTAGTGTTGTAGCTGCCGGTCTCATCCTTCTACTATCCGTCTTAGTTGGTTTTGTGTTATTTGCCCGTAAAGGTTGA

Protein sequence

>Msa0522560

MVKGVVGEETRFQLVEDRLTKSSPPPAEVGLLIGKFSSALDRVFLFDLIPTPPNDSGEPASSIIQPDKKTVSKSKSQTQPDSSSLYIDKDWVSEHARQVSRMLVGGIKVVGVYVWVNDNAFKNSTLMLCQTVKGVAEAAPASEVNWDERLLLQICYGPRRWNCRNCSLSSNITSSSLRPCDFKMGKVLSSFQTFRCMHNFNLRLPILHDGSSKFQTLSDVLHHAISVHAKELADAKALIDGKLVLDNEPCSLEGVHEVELLIPFLNDSSIEAYSQRDVSGILSFGGAICSFAYLNSKEPISQVVTDIKGDIITSLQSRLDIIRDETDVDSGNHHDVGRQVSEDDVSVEKPVSQLVLHLLRKECSLPFPRRVFAPWLAGTYVCDYLQPSETVEVLKDHCMELLSMKAPTDVSTILEPEKEVISFRTKSFWDVAVPSYSEIHLKEDKMKLDGRGESSSDKLLKPGHISVVAAGLILLLSVLVGFVLFARKG*