AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864470 MtrunA17_Chr5g0446841 94.382 801 17 1 1 801 1 773 0.0 1506
Msa0864470 MtrunA17_Chr5g0429151 34.687 911 432 30 9 801 3 868 3.74e-107 348
Msa0864470 MtrunA17_Chr8g0343521 59.155 71 27 2 6 76 9 77 1.89e-17 87.4
Msa0864470 MtrunA17_Chr8g0343521 31.356 236 122 14 593 801 784 1006 5.35e-11 66.6
Msa0864470 MtrunA17_Chr8g0380271 41.758 91 47 3 1 89 1 87 2.63e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864470 AT3G07660.1 36.550 487 214 16 399 801 366 841 1.48e-60 220
Msa0864470 AT3G07660.1 40.650 123 73 0 9 131 3 125 1.04e-18 91.7
Msa0864470 AT3G13222.1 44.366 142 65 3 5 145 3 131 9.32e-29 122
Msa0864470 AT3G13222.1 28.744 414 191 17 399 801 247 567 3.34e-15 80.1
Msa0864470 AT1G55820.1 46.043 139 61 5 9 147 6 130 3.06e-26 114
Msa0864470 AT1G55820.1 31.235 429 216 16 401 801 198 575 6.04e-25 110
Msa0864470 AT3G13990.1 28.070 285 166 10 1 271 2 261 1.07e-13 75.5
Msa0864470 AT3G13990.2 28.070 285 166 10 1 271 2 261 1.08e-13 75.5
Msa0864470 AT4G18150.1 36.029 136 70 6 7 130 2 132 1.23e-12 72.0

Find 266 sgRNAs with CRISPR-Local

Find 639 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCCATCTCCTCAATTTC+TGG 0.113744 5_4:-64846965 Msa0864470:CDS
ACTCAAAAGCTTCTCTATTT+AGG 0.177667 5_4:-64850424 Msa0864470:intron
CCAGCCGCGGCTGCAGCTGC+TGG 0.207112 5_4:-64843323 Msa0864470:CDS
GTGGTGGTGGTGGCGGGTCT+AGG 0.212056 5_4:-64850570 Msa0864470:CDS
TGCATTGGAGACAGGTAAAT+TGG 0.214964 5_4:+64843404 None:intergenic
CTCCGTGAGCAGCCTGTGTC+TGG 0.219809 5_4:+64842769 None:intergenic
CACTGCAGTATCTTCATTTC+CGG 0.236484 5_4:+64843163 None:intergenic
AATTTCATGTCTACCATGTT+AGG 0.248936 5_4:-64844730 Msa0864470:CDS
TTGAATTATACTGTTCTATA+TGG 0.260184 5_4:-64842197 Msa0864470:three_prime_UTR
GCTGGGCCAAATCATGTTAA+AGG 0.261520 5_4:-64847232 Msa0864470:CDS
GCAACAACTACATGTTTCTA+AGG 0.270655 5_4:+64842345 None:intergenic
TGGATTGATTTGCAGCACTA+TGG 0.273846 5_4:+64847584 None:intergenic
AAGTCTGGTCATGGTTCTTC+TGG 0.275778 5_4:-64847556 Msa0864470:CDS
CTTCCTATTCGAAGGGAAAA+TGG 0.277766 5_4:-64848182 Msa0864470:CDS
GGCCGCGGTGGTGGTGGTGG+CGG 0.286927 5_4:-64850577 Msa0864470:CDS
CACCGCCAACACCAGGAATC+TGG 0.293289 5_4:+64847290 None:intergenic
TGAAGGGTGCTGCTAGTTGC+AGG 0.295395 5_4:-64842428 Msa0864470:three_prime_UTR
CGGGTTGCTTGTTGAATTCA+TGG 0.297959 5_4:+64847153 None:intergenic
TTTGACTTTGGTATTGCATT+CGG 0.304863 5_4:+64847133 None:intergenic
CAAGTGCCTGAGGCTTTAAA+AGG 0.306095 5_4:-64846442 Msa0864470:CDS
TTGTTTCCTTTAACATGATT+TGG 0.306784 5_4:+64847226 None:intergenic
CAGCAGTCTCAAGCTGTCGC+TGG 0.314498 5_4:-64842690 Msa0864470:CDS
GCATTCACTGAAGAAGATTC+AGG 0.317221 5_4:+64846331 None:intergenic
GTTCAAAGTGCTCAAAACTA+TGG 0.320477 5_4:-64844757 Msa0864470:CDS
ATCTCCTCAATTTCTGGTTT+AGG 0.328781 5_4:-64846959 Msa0864470:intron
CCATCTATCTCCCAGATTCC+TGG 0.331270 5_4:-64847301 Msa0864470:CDS
CTGTAGAGGTGGAGTTGGGC+TGG 0.331789 5_4:+64843514 None:intergenic
GGCTATTCCTCAAACTTTCC+TGG 0.336120 5_4:-64848674 Msa0864470:intron
AACATGTAGTTGTTGCTATA+AGG 0.340815 5_4:-64842338 Msa0864470:three_prime_UTR
TCGCTCCAGCCTTGAATTGC+GGG 0.342458 5_4:+64843285 None:intergenic
CCTAGTCCGACCGTGAATAC+TGG 0.345879 5_4:-64843194 Msa0864470:CDS
AAATTACAACCTTGAGGCTT+GGG 0.350670 5_4:+64848085 None:intergenic
CCAGCAGCTGCAGCCGCGGC+TGG 0.355020 5_4:+64843323 None:intergenic
TTAAAAGGTGGTCTGACATT+TGG 0.355222 5_4:-64846427 Msa0864470:CDS
GGCTCATATTGGAATTCCTT+CGG 0.356484 5_4:-64843249 Msa0864470:CDS
TGGAGCGAACACAGGAAATA+TGG 0.359123 5_4:-64843270 Msa0864470:CDS
AGGCCAGTGTTCATTCTTCA+TGG 0.365615 5_4:+64842527 None:intergenic
ATCAAGATGATCTCCGTGTT+CGG 0.367141 5_4:+64844915 None:intergenic
ATTTGAGGGTAGTGAGCTTC+AGG 0.371447 5_4:-64844692 Msa0864470:CDS
TTGACTTTGGTATTGCATTC+GGG 0.371451 5_4:+64847134 None:intergenic
GCACTTTGAACAGTCAGAAT+TGG 0.377482 5_4:+64844769 None:intergenic
ATTTCTTTATAAGATTTAAC+AGG 0.377750 5_4:+64847002 None:intergenic
ATGCTGAAACTGTTAATTCA+AGG 0.379384 5_4:-64846312 Msa0864470:intron
AGCGGCGGCCGCGGTGGTGG+TGG 0.379951 5_4:-64850583 Msa0864470:CDS
GCATTGGAGACAGGTAAATT+GGG 0.381244 5_4:+64843405 None:intergenic
ACAGGAAATATGGCTCATAT+TGG 0.381667 5_4:-64843260 Msa0864470:CDS
CACCAACTCTATTGAACTCT+TGG 0.383167 5_4:+64842283 None:intergenic
TTGCTAGATGGTGGTGGTGG+TGG 0.383397 5_4:-64848212 Msa0864470:intron
GCCGCGGTGGTGGTGGTGGC+GGG 0.386945 5_4:-64850576 Msa0864470:CDS
TTTATAAGATTTAACAGGTA+TGG 0.399076 5_4:+64847007 None:intergenic
TCAGGCACTTGGAAATGGTT+TGG 0.399267 5_4:+64846454 None:intergenic
GAAACGGGCTGTGGAGAAAC+AGG 0.403673 5_4:+64843482 None:intergenic
GTTGTCCAGTTGTATAGATC+TGG 0.403934 5_4:+64843123 None:intergenic
AAGCCTCAGGCACTTGGAAA+TGG 0.404582 5_4:+64846449 None:intergenic
TGCTAGATGGTGGTGGTGGT+GGG 0.408293 5_4:-64848211 Msa0864470:intron
GTTCCCTCTCCCGCAATTCA+AGG 0.408553 5_4:-64843294 Msa0864470:CDS
TTCCTCTTCAGATCCTGTGC+TGG 0.408962 5_4:-64847326 Msa0864470:CDS
GTTGCAAACCGGACATATCT+TGG 0.409196 5_4:+64842841 None:intergenic
TCTGAAGGCATATCTATAAC+TGG 0.409197 5_4:-64844850 Msa0864470:CDS
TCAAGATGATCTCCGTGTTC+GGG 0.409737 5_4:+64844916 None:intergenic
CTTTCAACTTCATTTGACTT+TGG 0.410792 5_4:+64847121 None:intergenic
CAAATGAAGTTGAAAGTAAC+CGG 0.414132 5_4:-64847114 Msa0864470:CDS
GATCTATACAACTGGACAAC+TGG 0.415174 5_4:-64843120 Msa0864470:intron
AGGTGGTTGGCTAACGCAAC+TGG 0.415387 5_4:+64847048 None:intergenic
GGCGGCCGCGGTGGTGGTGG+TGG 0.416006 5_4:-64850580 Msa0864470:CDS
GCTCATATTGGAATTCCTTC+GGG 0.416308 5_4:-64843248 Msa0864470:CDS
GTTCGGGCAATGGCACGCTT+TGG 0.419058 5_4:+64844932 None:intergenic
CCAGTATTCACGGTCGGACT+AGG 0.420427 5_4:+64843194 None:intergenic
TGTAGAGGTGGAGTTGGGCT+GGG 0.425157 5_4:+64843515 None:intergenic
GAAAACCAGATCTATACAAC+TGG 0.430421 5_4:-64843128 Msa0864470:CDS
ATGAGCGGCGGCCGCGGTGG+TGG 0.430580 5_4:-64850586 Msa0864470:CDS
CATTGTAGGGATTGAGCAGC+AGG 0.430709 5_4:-64848760 Msa0864470:intron
GCTGCTCACGGAGCATTTCC+CGG 0.434441 5_4:-64842759 Msa0864470:CDS
AATCAATCCAATGGGAAGTC+TGG 0.436871 5_4:-64847571 Msa0864470:CDS
GGCGGGCCTACAGTTTCAAC+AGG 0.437990 5_4:+64842666 None:intergenic
CAGCCGCGGCTGCAGCTGCT+GGG 0.442511 5_4:-64843322 Msa0864470:CDS
CAACACTACCTATGAGAGAT+TGG 0.442663 5_4:+64847533 None:intergenic
CAGCTTGAGACTGCTGCAAA+AGG 0.443273 5_4:+64842697 None:intergenic
GAAATTACAACCTTGAGGCT+TGG 0.445152 5_4:+64848084 None:intergenic
AGTTGAGACCTCTGTGACAT+TGG 0.448927 5_4:+64846525 None:intergenic
GACTGCTGCAAAAGGGTAGA+AGG 0.449419 5_4:+64842705 None:intergenic
AGCTCTGTAGAGGTGGAGTT+GGG 0.449566 5_4:+64843510 None:intergenic
GTTAACAATACCTCCTGCTT+TGG 0.450263 5_4:+64844805 None:intergenic
TACCGCCTTCTCAGATCAAT+TGG 0.451052 5_4:-64842623 Msa0864470:CDS
AAAATTGATGCATTGGAGAC+AGG 0.452279 5_4:+64843396 None:intergenic
CTGCCCTGGTTGATAGATAC+CGG 0.454716 5_4:+64842740 None:intergenic
TGGTGGTGGTGGCGGGTCTA+GGG 0.455666 5_4:-64850569 Msa0864470:CDS
TCCGTGAGCAGCCTGTGTCT+GGG 0.456000 5_4:+64842770 None:intergenic
TGTTATTTACACTTCAGATC+AGG 0.456134 5_4:+64842507 None:intergenic
TAGAAGCTGAACTGCTTTGT+GGG 0.456515 5_4:+64847503 None:intergenic
GCTATCAAAATGTAGTATAC+AGG 0.460500 5_4:+64842228 None:intergenic
TTAGAAGCTGAACTGCTTTG+TGG 0.462040 5_4:+64847502 None:intergenic
GTTGCAAGGGCTCAGATAAC+CGG 0.463340 5_4:+64847095 None:intergenic
ATTGCAGACTGCAAGTTCTC+AGG 0.466939 5_4:-64843546 Msa0864470:intron
CCAGCTAACTTCTTCCCATA+TGG 0.466958 5_4:-64843440 Msa0864470:CDS
TAGATCAAAACAACGTGGAC+AGG 0.467933 5_4:-64848723 Msa0864470:CDS
TTCCGTACATTGTTGGGGAT+CGG 0.469554 5_4:+64850544 None:intergenic
GGGAGTGACCGGATATCTGC+TGG 0.471503 5_4:-64847250 Msa0864470:CDS
ATTTCATGTCTACCATGTTA+GGG 0.475944 5_4:-64844729 Msa0864470:CDS
AGCAGTCTCAAGCTGTCGCT+GGG 0.477878 5_4:-64842689 Msa0864470:CDS
AAAGGTTTGAGTAGGAATAG+TGG 0.481627 5_4:+64847426 None:intergenic
CCATATGGGAAGAAGTTAGC+TGG 0.481888 5_4:+64843440 None:intergenic
TTCCCTCAACAGCCATCAGC+TGG 0.482033 5_4:-64843359 Msa0864470:CDS
TCTTCTGGCCAATCTCTCAT+AGG 0.482357 5_4:-64847541 Msa0864470:CDS
CCAGCCTTGAATTGCGGGAG+AGG 0.483908 5_4:+64843290 None:intergenic
CCAGGAATCTGGGAGATAGA+TGG 0.484625 5_4:+64847301 None:intergenic
TTCGCTCCAGCCTTGAATTG+CGG 0.486110 5_4:+64843284 None:intergenic
TGGTGGCCTAAAATAAGAAA+CGG 0.489748 5_4:+64843466 None:intergenic
TCCCAGATTCCTGGTGTTGG+CGG 0.494415 5_4:-64847292 Msa0864470:CDS
GATTTGGCCCAGCAGATATC+CGG 0.495485 5_4:+64847242 None:intergenic
GAGCTCTGTAGAGGTGGAGT+TGG 0.496736 5_4:+64843509 None:intergenic
GTCAGAATTGGATGGCCCTC+GGG 0.498580 5_4:+64844781 None:intergenic
GTGAATACTGGAAGCTCTGC+CGG 0.500908 5_4:-64843182 Msa0864470:CDS
GAAAGAATGAGCGGCGGCCG+CGG 0.501038 5_4:-64850592 Msa0864470:exon
CATGTTTGATTCTTTAAGAA+CGG 0.501860 5_4:+64850462 None:intergenic
TGGCTTAGTATAATATCATC+AGG 0.502004 5_4:+64842303 None:intergenic
GGACCCGGACTTATCATTCT+CGG 0.502645 5_4:+64847174 None:intergenic
TTGGTCAGTTCTTGTAATTG+AGG 0.502651 5_4:+64847402 None:intergenic
CTATATAACCTTTCCCCTCA+AGG 0.503672 5_4:-64842810 Msa0864470:CDS
AGTTCTTGTAATTGAGGCAA+AGG 0.505006 5_4:+64847408 None:intergenic
ATCTCCCAGATTCCTGGTGT+TGG 0.505270 5_4:-64847295 Msa0864470:CDS
GGATTGATTTGCAGCACTAT+GGG 0.505515 5_4:+64847585 None:intergenic
CTCTTGCTAGATGGTGGTGG+TGG 0.506078 5_4:-64848215 Msa0864470:intron
GGTGCTGTCAGTAGGGAAGT+AGG 0.506343 5_4:-64847271 Msa0864470:CDS
AAAACAACGTGGACAGGGGA+GGG 0.506744 5_4:-64848717 Msa0864470:CDS
GAGATAGATGGTGCCAGCAC+AGG 0.507181 5_4:+64847313 None:intergenic
TCAACATCAAATTTCTGTAC+CGG 0.510047 5_4:-64847356 Msa0864470:CDS
GCTGATAAGATCCTGGAGGC+GGG 0.514023 5_4:+64842649 None:intergenic
TAGAGAATTAAGTTGCAAAC+CGG 0.515652 5_4:+64842830 None:intergenic
CCTCTCCCGCAATTCAAGGC+TGG 0.516531 5_4:-64843290 Msa0864470:CDS
CCGTGAGCAGCCTGTGTCTG+GGG 0.517112 5_4:+64842771 None:intergenic
GATCCCAGCAGCTGCAGCCG+CGG 0.517466 5_4:+64843319 None:intergenic
TAAACCAGAAATTGAGGAGA+TGG 0.517595 5_4:+64846961 None:intergenic
AAAGATTGAGCAGCCAAAGC+AGG 0.517956 5_4:-64844818 Msa0864470:CDS
AAACAACGTGGACAGGGGAG+GGG 0.518758 5_4:-64848716 Msa0864470:CDS
TTCCGATCCCCAACAATGTA+CGG 0.520407 5_4:-64850546 Msa0864470:CDS
AGGTGAGATGTTGCCCTTGA+GGG 0.520975 5_4:+64842796 None:intergenic
GCATCCGAGAATGATAAGTC+CGG 0.521679 5_4:-64847178 Msa0864470:CDS
GGTGGCCTAAAATAAGAAAC+GGG 0.522599 5_4:+64843467 None:intergenic
CAACAACTACATGTTTCTAA+GGG 0.523616 5_4:+64842346 None:intergenic
ACCGCCAACACCAGGAATCT+GGG 0.523803 5_4:+64847291 None:intergenic
ATTGAGCAGCAGGGTTTCTG+AGG 0.524138 5_4:-64848750 Msa0864470:CDS
GGAAACAAACTTGAAGAAGC+TGG 0.524687 5_4:-64847211 Msa0864470:CDS
GGGAAGAAGTTAGCTGGGTA+TGG 0.526076 5_4:+64843446 None:intergenic
TGCTGATAAGATCCTGGAGG+CGG 0.526275 5_4:+64842648 None:intergenic
TGATCTCCGTGTTCGGGCAA+TGG 0.526759 5_4:+64844922 None:intergenic
AAACTTTACCTTGAGGTGGT+TGG 0.528234 5_4:+64847035 None:intergenic
GTGTTGGCGGTGCTGTCAGT+AGG 0.529908 5_4:-64847279 Msa0864470:CDS
AGAATGAGCGGCGGCCGCGG+TGG 0.530461 5_4:-64850589 Msa0864470:CDS
GGACTAGGAGCATATCCAAC+AGG 0.533992 5_4:+64843209 None:intergenic
GATCTCTCTGATGTCGTGGA+TGG 0.534492 5_4:+64850519 None:intergenic
CCCCAGACACAGGCTGCTCA+CGG 0.537435 5_4:-64842771 Msa0864470:CDS
GAAACTGTAGGCCCGCCTCC+AGG 0.540189 5_4:-64842660 Msa0864470:CDS
AAGGAACTTACAACAAAGGA+AGG 0.540556 5_4:+64844649 None:intergenic
CTAAAATAAGAAACGGGCTG+TGG 0.541113 5_4:+64843473 None:intergenic
GAATTCCAATTGATCTGAGA+AGG 0.541172 5_4:+64842618 None:intergenic
AGTCAGAATTGGATGGCCCT+CGG 0.541571 5_4:+64844780 None:intergenic
ATTGAGGCAAAGGTTTGAGT+AGG 0.542007 5_4:+64847418 None:intergenic
AATATCATCAGGAATTACTA+AGG 0.542667 5_4:+64842314 None:intergenic
GTGCTGCAAATCAATCCAAT+GGG 0.544641 5_4:-64847579 Msa0864470:CDS
GATGTTGCCCTTGAGGGGAA+AGG 0.546066 5_4:+64842802 None:intergenic
AAATGTACCAGGAAAGTTTG+AGG 0.546172 5_4:+64848667 None:intergenic
TCATATATCACTCCACCTGT+TGG 0.546789 5_4:-64843224 Msa0864470:CDS
TTGCCAGCTGATGGCTGTTG+AGG 0.547973 5_4:+64843356 None:intergenic
GAGTTCTCTCTGCAATGTGA+TGG 0.550044 5_4:+64848156 None:intergenic
AGCCAAGAGTTCAATAGAGT+TGG 0.550760 5_4:-64842285 Msa0864470:three_prime_UTR
CAAAACAACGTGGACAGGGG+AGG 0.551743 5_4:-64848718 Msa0864470:CDS
GCTGGGCCTGTTGAAACTGT+AGG 0.551856 5_4:-64842672 Msa0864470:CDS
CGGTGATCTCTCTGATGTCG+TGG 0.555061 5_4:+64850515 None:intergenic
AGCTTGAGACTGCTGCAAAA+GGG 0.555438 5_4:+64842698 None:intergenic
GGCAGAGCTTCCAGTATTCA+CGG 0.556493 5_4:+64843184 None:intergenic
GCTTGTTGAATTCATGGACC+CGG 0.556640 5_4:+64847159 None:intergenic
GACTCAGCAAGTGCAATTTG+AGG 0.557313 5_4:-64844707 Msa0864470:CDS
GGAGAAACCTTCCTATTCGA+AGG 0.560546 5_4:-64848190 Msa0864470:CDS
AGTGCTGCAAATCAATCCAA+TGG 0.560942 5_4:-64847580 Msa0864470:CDS
GTAGGGAAGTAGGGAGTGAC+CGG 0.561882 5_4:-64847261 Msa0864470:CDS
CAACATCAAATTTCTGTACC+GGG 0.562172 5_4:-64847355 Msa0864470:CDS
CTGTAAATCTGGCTGAGTAG+AGG 0.562674 5_4:+64848127 None:intergenic
AAACCGGACATATCTTGGCC+TGG 0.562751 5_4:+64842846 None:intergenic
GTGCTGTCAGTAGGGAAGTA+GGG 0.563373 5_4:-64847270 Msa0864470:CDS
TTCAAGGCTGGAGCGAACAC+AGG 0.563651 5_4:-64843278 Msa0864470:CDS
ACTCAGCAAGTGCAATTTGA+GGG 0.567548 5_4:-64844706 Msa0864470:CDS
GGTAGCTGCTGATAAGATCC+TGG 0.567965 5_4:+64842642 None:intergenic
CTCAACTCAGTTGACTGCAC+AGG 0.568411 5_4:+64846493 None:intergenic
GCACCAGGCCAAGATATGTC+CGG 0.568756 5_4:-64842849 Msa0864470:CDS
CGTTCTTAAAGAATCAAACA+TGG 0.570146 5_4:-64850461 Msa0864470:CDS
ACTGAAGAAGATTCAGGAGT+GGG 0.570709 5_4:+64846337 None:intergenic
GGTATAGAGCTCTGTAGAGG+TGG 0.570730 5_4:+64843503 None:intergenic
CCTACCTAAACCAGAAATTG+AGG 0.571437 5_4:+64846955 None:intergenic
CGTGAGCAGCCTGTGTCTGG+GGG 0.572469 5_4:+64842772 None:intergenic
CAGCCTTGAATTGCGGGAGA+GGG 0.573024 5_4:+64843291 None:intergenic
TATATAACCTTTCCCCTCAA+GGG 0.573028 5_4:-64842809 Msa0864470:CDS
TGCCAGCTGATGGCTGTTGA+GGG 0.575376 5_4:+64843357 None:intergenic
GGACAGGGGAGGGGAGCAAG+AGG 0.576708 5_4:-64848707 Msa0864470:CDS
AACAACTACATGTTTCTAAG+GGG 0.576952 5_4:+64842347 None:intergenic
CTGACAGCACCGCCAACACC+AGG 0.577823 5_4:+64847283 None:intergenic
ATGCAGCACCCCAAGCCTCA+AGG 0.578939 5_4:-64848094 Msa0864470:intron
AGCGTGCCATTGCCCGAACA+CGG 0.582012 5_4:-64844928 Msa0864470:CDS
CATCCGAGAATGATAAGTCC+GGG 0.582263 5_4:-64847177 Msa0864470:CDS
TCCAATGGGAAGTCTGGTCA+TGG 0.589033 5_4:-64847565 Msa0864470:CDS
AGATCAAAACAACGTGGACA+GGG 0.589207 5_4:-64848722 Msa0864470:CDS
AAGGTGAGATGTTGCCCTTG+AGG 0.590754 5_4:+64842795 None:intergenic
GGAGGTATTGTTAACTCCCG+AGG 0.592527 5_4:-64844797 Msa0864470:CDS
AAGGAGACGTGACCGCAGAA+AGG 0.597120 5_4:-64849366 Msa0864470:CDS
GGTGAAGTTACTGTCTGCCC+TGG 0.598871 5_4:+64842726 None:intergenic
AAAGAGACACTAGCTTCTGA+AGG 0.599821 5_4:-64844865 Msa0864470:CDS
AAGAAGTTAGCTGGGTATGG+TGG 0.600041 5_4:+64843449 None:intergenic
TTTCCCGGTATCTATCAACC+AGG 0.601306 5_4:-64842744 Msa0864470:CDS
AAACCATTTCCAAGTGCCTG+AGG 0.602183 5_4:-64846452 Msa0864470:CDS
AATTACAACCTTGAGGCTTG+GGG 0.602227 5_4:+64848086 None:intergenic
TGCCCTGGTTGATAGATACC+GGG 0.602438 5_4:+64842741 None:intergenic
AGATACATGTTGCCAGCTGA+TGG 0.604442 5_4:+64843347 None:intergenic
TGCGTTAGCCAACCACCTCA+AGG 0.605206 5_4:-64847043 Msa0864470:CDS
ACCATGACCAGACTTCCCAT+TGG 0.605580 5_4:+64847564 None:intergenic
CATATGGGAAGAAGTTAGCT+GGG 0.606074 5_4:+64843441 None:intergenic
TTTGAACAGTCAGAATTGGA+TGG 0.606885 5_4:+64844773 None:intergenic
CATCTCTTGCTAGATGGTGG+TGG 0.607034 5_4:-64848218 Msa0864470:intron
GATTGAGCAGCCAAAGCAGG+AGG 0.610604 5_4:-64844815 Msa0864470:CDS
CTGTGCAGTCAACTGAGTTG+AGG 0.612178 5_4:-64846492 Msa0864470:CDS
CACTTGCTGAGTCCCTAACA+TGG 0.613709 5_4:+64844717 None:intergenic
GATGAAGGAACTTACAACAA+AGG 0.614555 5_4:+64844645 None:intergenic
GAAGACGATGAGAGTTGCAA+GGG 0.616553 5_4:+64847082 None:intergenic
AATCCATGAAGAATGAACAC+TGG 0.617265 5_4:-64842530 Msa0864470:three_prime_UTR
TGAAGACGATGAGAGTTGCA+AGG 0.618276 5_4:+64847081 None:intergenic
GGTGAGATGTTGCCCTTGAG+GGG 0.619566 5_4:+64842797 None:intergenic
CATTGGAGACAGGTAAATTG+GGG 0.621229 5_4:+64843406 None:intergenic
AAAATCTTACTTCCTTTCTG+CGG 0.621895 5_4:+64849354 None:intergenic
GTGCCTGAGGCTTTAAAAGG+TGG 0.624955 5_4:-64846439 Msa0864470:CDS
CAACTACATGTTTCTAAGGG+GGG 0.639254 5_4:+64842349 None:intergenic
TGTTGGCGGTGCTGTCAGTA+GGG 0.639667 5_4:-64847278 Msa0864470:CDS
GGAGTGACCGGATATCTGCT+GGG 0.642640 5_4:-64847249 Msa0864470:CDS
CACTGAAGAAGATTCAGGAG+TGG 0.642648 5_4:+64846336 None:intergenic
GAGCTTCCAGTATTCACGGT+CGG 0.642719 5_4:+64843188 None:intergenic
ACAGGTATAGAGCTCTGTAG+AGG 0.643476 5_4:+64843500 None:intergenic
GAGAAACCTTCCTATTCGAA+GGG 0.643860 5_4:-64848189 Msa0864470:CDS
ACAACTACATGTTTCTAAGG+GGG 0.647835 5_4:+64842348 None:intergenic
CACGACATCAGAGAGATCAC+CGG 0.648780 5_4:-64850514 Msa0864470:CDS
ACAACAAAGGAAGGGAAGTG+TGG 0.650206 5_4:+64844658 None:intergenic
TGAAGTGTAAATAACAAATG+CGG 0.652445 5_4:-64842500 Msa0864470:three_prime_UTR
CTAGGAGCATATCCAACAGG+TGG 0.652618 5_4:+64843212 None:intergenic
TGCCAGCACAGGATCTGAAG+AGG 0.656250 5_4:+64847324 None:intergenic
GCTGCAACAACAACAGCTTG+AGG 0.660568 5_4:+64847451 None:intergenic
GCTGTGTGGATACATGCACC+AGG 0.661823 5_4:-64842864 Msa0864470:CDS
TCTGAAGAGGAACAAACACC+CGG 0.663195 5_4:+64847337 None:intergenic
GATTGATTTGCAGCACTATG+GGG 0.666760 5_4:+64847586 None:intergenic
ATTGTAGGGATTGAGCAGCA+GGG 0.668215 5_4:-64848759 Msa0864470:intron
TTCCAATTGATCTGAGAAGG+CGG 0.672381 5_4:+64842621 None:intergenic
ACCCGCCACCACCACCACCG+CGG 0.677659 5_4:+64850575 None:intergenic
TTGGAGACAGGTAAATTGGG+GGG 0.679905 5_4:+64843408 None:intergenic
TCTCTCTCTGAAAGAATGAG+CGG 0.679913 5_4:-64850601 Msa0864470:exon
GAGGTATTGTTAACTCCCGA+GGG 0.680947 5_4:-64844796 Msa0864470:CDS
TCAATTACAAGAACTGACCA+AGG 0.681707 5_4:-64847400 Msa0864470:CDS
AGGAACTTACAACAAAGGAA+GGG 0.682074 5_4:+64844650 None:intergenic
GATCACCGGAAAACAACACA+CGG 0.685967 5_4:-64850500 Msa0864470:CDS
GATCAAAACAACGTGGACAG+GGG 0.696924 5_4:-64848721 Msa0864470:CDS
ATACAGGTGAGAATTGAGAA+CGG 0.696993 5_4:+64842244 None:intergenic
CTCTCTGAAAGAATGAGCGG+CGG 0.701991 5_4:-64850598 Msa0864470:exon
CAACATGTATCTACCAGCCG+CGG 0.706772 5_4:-64843336 Msa0864470:CDS
TTCCCGGTATCTATCAACCA+GGG 0.707077 5_4:-64842743 Msa0864470:CDS
AGAGTGAAGGCTCTGCTGTG+TGG 0.711840 5_4:-64842878 Msa0864470:CDS
AGCTGCTGATAAGATCCTGG+AGG 0.720533 5_4:+64842645 None:intergenic
ATTGGAGACAGGTAAATTGG+GGG 0.735261 5_4:+64843407 None:intergenic
TAAAACAGCCAATGTCACAG+AGG 0.735538 5_4:-64846533 Msa0864470:CDS
GCTGTTGAGGGAAACCATTG+TGG 0.747524 5_4:+64843369 None:intergenic
GGAGTGATATATGATCCCGA+AGG 0.756582 5_4:+64843233 None:intergenic
GAGTCTAGATCAAAACAACG+TGG 0.798909 5_4:-64848728 Msa0864470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTGTTTTTTTTTTTTTTT+TGG - chr5_4:64842525-64842544 Msa0864470:three_prime_UTR 10.0%
!!! AATATCTCATAAATTATTTT+AGG + chr5_4:64844374-64844393 None:intergenic 10.0%
!! ATTATAAGAAAATATAATAG+CGG - chr5_4:64844822-64844841 Msa0864470:CDS 10.0%
!!! AAAATTAATAACAGAATTTT+AGG + chr5_4:64846206-64846225 None:intergenic 10.0%
!! TTAAAAAAACAAGATTAAAT+AGG - chr5_4:64847202-64847221 Msa0864470:CDS 10.0%
!! TGGATTAATAATTAAATATA+AGG + chr5_4:64849202-64849221 None:intergenic 10.0%
!!! TATTTATTTTTTGAAGTAAT+AGG + chr5_4:64849791-64849810 None:intergenic 10.0%
!!! TATATTTATTTTTATTTTCG+AGG - chr5_4:64850438-64850457 Msa0864470:CDS 10.0%
!!! AGCAAAATATAAATTGTTTT+TGG - chr5_4:64843060-64843079 Msa0864470:intron 15.0%
!! ATAAACATCAGAAAAAATTA+TGG + chr5_4:64844030-64844049 None:intergenic 15.0%
!! ATTTCTTTATAAGATTTAAC+AGG + chr5_4:64845841-64845860 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr5_4:64846889-64846908 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr5_4:64846913-64846932 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr5_4:64846912-64846931 Msa0864470:intron 15.0%
!! TTAATTATTAATCCATTTGT+TGG - chr5_4:64849207-64849226 Msa0864470:intron 15.0%
!!! TAATTTCTTTTCTCATTTTT+TGG + chr5_4:64850366-64850385 None:intergenic 15.0%
!!! TTTACTGTTTTCTTGATTTA+AGG - chr5_4:64842599-64842618 Msa0864470:exon 20.0%
!!! TTACTGTTTTCTTGATTTAA+GGG - chr5_4:64842600-64842619 Msa0864470:exon 20.0%
!!! TTTTTTTATTGTGTAATGCT+TGG - chr5_4:64842952-64842971 Msa0864470:intron 20.0%
!! ATGTTAAAAGCTTACAAAAT+GGG - chr5_4:64843005-64843024 Msa0864470:intron 20.0%
!! AATACTAAGAACTAACATTA+GGG + chr5_4:64843523-64843542 None:intergenic 20.0%
!! AAATACTAAGAACTAACATT+AGG + chr5_4:64843524-64843543 None:intergenic 20.0%
!!! CATATCGAGTTTTTTAAAAA+TGG + chr5_4:64843668-64843687 None:intergenic 20.0%
!! ATATGCAATACAATTTAAGT+TGG - chr5_4:64843683-64843702 Msa0864470:intron 20.0%
!! TTTAATTGCATTTGAAAGTT+AGG - chr5_4:64843717-64843736 Msa0864470:intron 20.0%
!! AGTTAAAAACAAATCAGTTA+CGG + chr5_4:64844056-64844075 None:intergenic 20.0%
!!! TAACTGATTTGTTTTTAACT+TGG - chr5_4:64844056-64844075 Msa0864470:intron 20.0%
!!! ACATTTTTCATACTTTTTAG+AGG - chr5_4:64844190-64844209 Msa0864470:intron 20.0%
!!! ATCTCATAAATTATTTTAGG+AGG + chr5_4:64844371-64844390 None:intergenic 20.0%
!! GAAATTAAAGTATAATTCTC+AGG + chr5_4:64844407-64844426 None:intergenic 20.0%
!! TCATCTTGATTGATTAAAAA+GGG + chr5_4:64844454-64844473 None:intergenic 20.0%
!! TTCATCTTGATTGATTAAAA+AGG + chr5_4:64844455-64844474 None:intergenic 20.0%
!! TTGAACGTTATATTTGTAAA+AGG + chr5_4:64845031-64845050 None:intergenic 20.0%
!! TTTATAAGATTTAACAGGTA+TGG + chr5_4:64845836-64845855 None:intergenic 20.0%
!!! CTTTTCTGAAGATATTTTAA+GGG - chr5_4:64846065-64846084 Msa0864470:intron 20.0%
!! TAGAGAAAAATCAAAAAGAA+TGG + chr5_4:64846238-64846257 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr5_4:64846827-64846846 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr5_4:64846903-64846922 Msa0864470:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr5_4:64846946-64846965 None:intergenic 20.0%
!!! ATAGTTTTTTGTGTTTTCTT+TGG - chr5_4:64847038-64847057 Msa0864470:CDS 20.0%
!!! TTTTTTTTTGCCTTACATTT+TGG - chr5_4:64847272-64847291 Msa0864470:CDS 20.0%
!!! TTTTTTTTGCCTTACATTTT+GGG - chr5_4:64847273-64847292 Msa0864470:CDS 20.0%
!! TATATTAAACCTCTTCATTA+AGG - chr5_4:64847306-64847325 Msa0864470:CDS 20.0%
!! ATATTAAACCTCTTCATTAA+GGG - chr5_4:64847307-64847326 Msa0864470:CDS 20.0%
!! AAAGATAGTATTAAGACATA+GGG + chr5_4:64848271-64848290 None:intergenic 20.0%
!! AAAAGATAGTATTAAGACAT+AGG + chr5_4:64848272-64848291 None:intergenic 20.0%
!!! ATGTCTTAATACTATCTTTT+TGG - chr5_4:64848272-64848291 Msa0864470:intron 20.0%
!!! TTAATACTATCTTTTTGGTT+CGG - chr5_4:64848277-64848296 Msa0864470:intron 20.0%
!!! CTTTAAGTTTATTCTTTGTA+AGG + chr5_4:64848825-64848844 None:intergenic 20.0%
!! CTTACAAAGAATAAACTTAA+AGG - chr5_4:64848823-64848842 Msa0864470:intron 20.0%
!!! CTTTAAGTTTATTCTTTGTA+AGG + chr5_4:64848825-64848844 None:intergenic 20.0%
!! GAATAAACTTAAAGAATGTA+AGG - chr5_4:64849009-64849028 Msa0864470:intron 20.0%
!!! CAATTTTTTATTGAGATACT+TGG - chr5_4:64849881-64849900 Msa0864470:intron 20.0%
!!! CAATTGGAATTCTAATTTTT+AGG - chr5_4:64850233-64850252 Msa0864470:intron 20.0%
!!! ATATGTGCATTTTAACAATA+TGG + chr5_4:64850280-64850299 None:intergenic 20.0%
!!! AAGAAATTAGTAACTGTTTT+TGG - chr5_4:64850377-64850396 Msa0864470:intron 20.0%
!! TTGAATTATACTGTTCTATA+TGG - chr5_4:64850643-64850662 Msa0864470:five_prime_UTR 20.0%
!! CATGTTTGATTCTTTAAGAA+CGG + chr5_4:64842381-64842400 None:intergenic 25.0%
!!! TTCTTGATTTAAGGGTTTTT+TGG - chr5_4:64842608-64842627 Msa0864470:CDS 25.0%
!!! ATAAGTTTTGTGAGACTATT+CGG - chr5_4:64842659-64842678 Msa0864470:CDS 25.0%
! TGGAAACATGATTGAAAATA+AGG - chr5_4:64842972-64842991 Msa0864470:intron 25.0%
! GATGTTAAAAGCTTACAAAA+TGG - chr5_4:64843004-64843023 Msa0864470:intron 25.0%
!!! GAGTTTTTCGTTTTTATGTT+CGG - chr5_4:64843390-64843409 Msa0864470:CDS 25.0%
!! ATACTTTTCATGAAGTAAGA+AGG - chr5_4:64843455-64843474 Msa0864470:CDS 25.0%
!! TATTTTTCCATTACTAGTAG+AGG - chr5_4:64843552-64843571 Msa0864470:intron 25.0%
! GTAATTGTTAGTATTATGCT+GGG + chr5_4:64843627-64843646 None:intergenic 25.0%
! AGTAATTGTTAGTATTATGC+TGG + chr5_4:64843628-64843647 None:intergenic 25.0%
!! AACATAAAACAGGTCTTTTA+CGG + chr5_4:64843937-64843956 None:intergenic 25.0%
!! AAAAGTATGAAAAATGTACC+AGG + chr5_4:64844187-64844206 None:intergenic 25.0%
! TTCGTTTATGAAGATTCTTA+AGG - chr5_4:64844247-64844266 Msa0864470:intron 25.0%
!!! ATTTTACAGACTGATTTTCT+TGG + chr5_4:64844276-64844295 None:intergenic 25.0%
!! ATCAGTCTGTAAAATACTTT+TGG - chr5_4:64844281-64844300 Msa0864470:intron 25.0%
! TAGCATCAAAAGATAAAAGT+GGG + chr5_4:64844496-64844515 None:intergenic 25.0%
! ATAGCATCAAAAGATAAAAG+TGG + chr5_4:64844497-64844516 None:intergenic 25.0%
!! TTATGATGATGATGATGAAT+AGG + chr5_4:64844553-64844572 None:intergenic 25.0%
! AATGAGCTAATAAAATAAGC+AGG + chr5_4:64844581-64844600 None:intergenic 25.0%
!! TTAGTGTTTTTCTGTAAATC+TGG + chr5_4:64844727-64844746 None:intergenic 25.0%
! TAATAGAAATTACAACCTTG+AGG + chr5_4:64844764-64844783 None:intergenic 25.0%
! TCTTATAATCAGAGATAGTA+TGG + chr5_4:64844811-64844830 None:intergenic 25.0%
! AACGAAAGAAAAACAAAGTA+AGG - chr5_4:64844912-64844931 Msa0864470:CDS 25.0%
! GCAAACAAACAAATACAAAA+GGG + chr5_4:64844951-64844970 None:intergenic 25.0%
! TGCAAACAAACAAATACAAA+AGG + chr5_4:64844952-64844971 None:intergenic 25.0%
!! AGTAATTTCCTACTTGATTT+TGG - chr5_4:64845139-64845158 Msa0864470:intron 25.0%
! TTGTTTCCTTTAACATGATT+TGG + chr5_4:64845617-64845636 None:intergenic 25.0%
!! ACAATTTTACCAGATGTATA+TGG - chr5_4:64845933-64845952 Msa0864470:intron 25.0%
!!! GATTTTTTTTTCCCATACTT+TGG + chr5_4:64846037-64846056 None:intergenic 25.0%
! CCTTAAAATATCTTCAGAAA+AGG + chr5_4:64846067-64846086 None:intergenic 25.0%
!!! CCTTTTCTGAAGATATTTTA+AGG - chr5_4:64846064-64846083 Msa0864470:intron 25.0%
! ATTTCAGCACAAAAAAATCT+GGG + chr5_4:64846140-64846159 None:intergenic 25.0%
! TATTTCAGCACAAAAAAATC+TGG + chr5_4:64846141-64846160 None:intergenic 25.0%
! AAAAATCAAAAAGAATGGAG+CGG + chr5_4:64846233-64846252 None:intergenic 25.0%
!! TTTTTGCTTACAATTTGAGA+CGG + chr5_4:64846693-64846712 None:intergenic 25.0%
!!! TTTCTTTGGAATAAGTTTCA+TGG - chr5_4:64847052-64847071 Msa0864470:CDS 25.0%
!!! TTCTTTGGAATAAGTTTCAT+GGG - chr5_4:64847053-64847072 Msa0864470:CDS 25.0%
!! GATGTAAGAACAATTTTCAT+TGG - chr5_4:64847078-64847097 Msa0864470:CDS 25.0%
!!! TTTTCATTGGCTATTGATTA+TGG - chr5_4:64847091-64847110 Msa0864470:CDS 25.0%
! TCATAGACAAAGAAATGATT+TGG - chr5_4:64847522-64847541 Msa0864470:CDS 25.0%
! TAACTCAAAAAGATGAATTG+GGG + chr5_4:64847581-64847600 None:intergenic 25.0%
! GTAACTCAAAAAGATGAATT+GGG + chr5_4:64847582-64847601 None:intergenic 25.0%
! GGTTCATTATAGTTATTCTT+GGG + chr5_4:64847737-64847756 None:intergenic 25.0%
! AGGTTCATTATAGTTATTCT+TGG + chr5_4:64847738-64847757 None:intergenic 25.0%
! ACTATAATGAACCTAAAAGT+TGG - chr5_4:64847744-64847763 Msa0864470:intron 25.0%
! TAATCCTCCTCTTATAAAAA+AGG - chr5_4:64847821-64847840 Msa0864470:intron 25.0%
!!! TGATCTTCCTTTTTTATAAG+AGG + chr5_4:64847831-64847850 None:intergenic 25.0%
!! TCAAAACATTGATTACAACA+TGG + chr5_4:64847862-64847881 None:intergenic 25.0%
!!! TGTTGTAATCAATGTTTTGA+TGG - chr5_4:64847862-64847881 Msa0864470:intron 25.0%
! TCTTAAGAAATACATGATGA+AGG + chr5_4:64848213-64848232 None:intergenic 25.0%
! GGTCAATGAAAAAGAATTTA+AGG - chr5_4:64848967-64848986 Msa0864470:intron 25.0%
! ACTTAAGTTTATTCCTTGTA+AGG + chr5_4:64849045-64849064 None:intergenic 25.0%
! TTGAAGAATAAACTTGAGAT+TGG - chr5_4:64849076-64849095 Msa0864470:intron 25.0%
! AAAGAATGACAGAGATATTA+GGG + chr5_4:64849270-64849289 None:intergenic 25.0%
! TAAAGAATGACAGAGATATT+AGG + chr5_4:64849271-64849290 None:intergenic 25.0%
!!! TGGAATTCTAATTTTTAGGA+TGG - chr5_4:64850237-64850256 Msa0864470:intron 25.0%
!!! GGAATTCTAATTTTTAGGAT+GGG - chr5_4:64850238-64850257 Msa0864470:intron 25.0%
! TGAAGTGTAAATAACAAATG+CGG - chr5_4:64850340-64850359 Msa0864470:intron 25.0%
! AATATCATCAGGAATTACTA+AGG + chr5_4:64850529-64850548 None:intergenic 25.0%
CGTTCTTAAAGAATCAAACA+TGG - chr5_4:64842379-64842398 Msa0864470:three_prime_UTR 30.0%
!! AGCTTTTGAGTAGTTTCATT+GGG + chr5_4:64842407-64842426 None:intergenic 30.0%
!! AAGCTTTTGAGTAGTTTCAT+TGG + chr5_4:64842408-64842427 None:intergenic 30.0%
ACTCAAAAGCTTCTCTATTT+AGG - chr5_4:64842416-64842435 Msa0864470:three_prime_UTR 30.0%
!! CATTGTTCATAAGCTGTTTT+TGG - chr5_4:64842706-64842725 Msa0864470:CDS 30.0%
AAGCTTACAAAATGGGATTT+AGG - chr5_4:64843012-64843031 Msa0864470:intron 30.0%
CGAAATAGCTAATACAAACA+GGG + chr5_4:64843038-64843057 None:intergenic 30.0%
TCGAAATAGCTAATACAAAC+AGG + chr5_4:64843039-64843058 None:intergenic 30.0%
!! GTTTTTGGATAAGCTATAAG+CGG - chr5_4:64843075-64843094 Msa0864470:intron 30.0%
TAGCTTATGACATTGTTCAA+AGG + chr5_4:64843148-64843167 None:intergenic 30.0%
GCTTATTTGAGCTTATCTAT+TGG + chr5_4:64843210-64843229 None:intergenic 30.0%
!! TTTATGTTCGGTGTATTAAC+TGG - chr5_4:64843402-64843421 Msa0864470:CDS 30.0%
AAAATCTTACTTCCTTTCTG+CGG + chr5_4:64843489-64843508 None:intergenic 30.0%
ATTGCATTTGAAAGTTAGGT+TGG - chr5_4:64843721-64843740 Msa0864470:intron 30.0%
TATTTAGACGAGAAATCAAC+TGG + chr5_4:64843752-64843771 None:intergenic 30.0%
CATGTATATTCAGACAGTTA+GGG + chr5_4:64843847-64843866 None:intergenic 30.0%
TGAATATACATGGTTGCAAT+AGG - chr5_4:64843855-64843874 Msa0864470:intron 30.0%
ATTACAGAGTGCATACTAAA+CGG + chr5_4:64843894-64843913 None:intergenic 30.0%
!!! TTTTTAACTTGGCCATTGTA+GGG - chr5_4:64844067-64844086 Msa0864470:intron 30.0%
AGCATCAAAAGATAAAAGTG+GGG + chr5_4:64844495-64844514 None:intergenic 30.0%
TAGGACAGATCTCTATAATA+TGG + chr5_4:64844534-64844553 None:intergenic 30.0%
CAAGAGATGTTTGAAAGAAA+AGG + chr5_4:64844611-64844630 None:intergenic 30.0%
!!! CTTGCTTTTTATCGTTAAAC+AGG + chr5_4:64844869-64844888 None:intergenic 30.0%
CTGTTTAACGATAAAAAGCA+AGG - chr5_4:64844867-64844886 Msa0864470:CDS 30.0%
TAACCAAATCTCATTCATTC+TGG - chr5_4:64844982-64845001 Msa0864470:intron 30.0%
TTACCAGAATGAATGAGATT+TGG + chr5_4:64844988-64845007 None:intergenic 30.0%
CAGTAAATCCAAAATCAAGT+AGG + chr5_4:64845150-64845169 None:intergenic 30.0%
TCAACATCAAATTTCTGTAC+CGG - chr5_4:64845484-64845503 Msa0864470:intron 30.0%
! TTTGACTTTGGTATTGCATT+CGG + chr5_4:64845710-64845729 None:intergenic 30.0%
! CTTTCAACTTCATTTGACTT+TGG + chr5_4:64845722-64845741 None:intergenic 30.0%
CAAATGAAGTTGAAAGTAAC+CGG - chr5_4:64845726-64845745 Msa0864470:intron 30.0%
ATAAAAACTTTACCTTGAGG+TGG + chr5_4:64845812-64845831 None:intergenic 30.0%
GGAATAAAAACTTTACCTTG+AGG + chr5_4:64845815-64845834 None:intergenic 30.0%
AAACAATGACCATATACATC+TGG + chr5_4:64845945-64845964 None:intergenic 30.0%
TGAAATAATCCCACATTTGA+TGG - chr5_4:64846154-64846173 Msa0864470:intron 30.0%
AGTATGATTCCATCAAATGT+GGG + chr5_4:64846166-64846185 None:intergenic 30.0%
ATGCTGAAACTGTTAATTCA+AGG - chr5_4:64846528-64846547 Msa0864470:CDS 30.0%
! CAAAGAAAAGCACATACATT+AGG + chr5_4:64846571-64846590 None:intergenic 30.0%
TCACTCATACACCATTTAAA+AGG + chr5_4:64846630-64846649 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr5_4:64846798-64846817 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr5_4:64846995-64847014 Msa0864470:CDS 30.0%
! GCTATTGATTATGGAGAAAA+TGG - chr5_4:64847100-64847119 Msa0864470:CDS 30.0%
! GTCTGTTTTGCTTACATTTT+TGG - chr5_4:64847235-64847254 Msa0864470:CDS 30.0%
!!! GTTTATGGCGAATGTTTTTT+TGG - chr5_4:64847485-64847504 Msa0864470:CDS 30.0%
AACTCAAAAAGATGAATTGG+GGG + chr5_4:64847580-64847599 None:intergenic 30.0%
GGTAACTCAAAAAGATGAAT+TGG + chr5_4:64847583-64847602 None:intergenic 30.0%
!!! TTTTTGAGTTACCCCAAATT+AGG - chr5_4:64847590-64847609 Msa0864470:CDS 30.0%
!!! TTTTGAGTTACCCCAAATTA+GGG - chr5_4:64847591-64847610 Msa0864470:CDS 30.0%
GAATTAAAACCCCTAATTTG+GGG + chr5_4:64847604-64847623 None:intergenic 30.0%
GGAATTAAAACCCCTAATTT+GGG + chr5_4:64847605-64847624 None:intergenic 30.0%
TGGAATTAAAACCCCTAATT+TGG + chr5_4:64847606-64847625 None:intergenic 30.0%
!!! AATTAGGGGTTTTAATTCCA+TGG - chr5_4:64847606-64847625 Msa0864470:intron 30.0%
!!! TCTTCCTTTTTTATAAGAGG+AGG + chr5_4:64847828-64847847 None:intergenic 30.0%
AATTTCATGTCTACCATGTT+AGG - chr5_4:64848110-64848129 Msa0864470:CDS 30.0%
ATTTCATGTCTACCATGTTA+GGG - chr5_4:64848111-64848130 Msa0864470:CDS 30.0%
!! GATACTGACTTGTATTCATA+TGG - chr5_4:64848306-64848325 Msa0864470:intron 30.0%
TTGTATTCATATGGTTGGAA+AGG - chr5_4:64848315-64848334 Msa0864470:intron 30.0%
ATTAGTGCAAATAATGTGAG+AGG + chr5_4:64848352-64848371 None:intergenic 30.0%
! AGTTTTCAATCATAAAGTCC+GGG + chr5_4:64848459-64848478 None:intergenic 30.0%
! GAGTTTTCAATCATAAAGTC+CGG + chr5_4:64848460-64848479 None:intergenic 30.0%
TTAAGCATATATTAAGCCCT+TGG - chr5_4:64848556-64848575 Msa0864470:intron 30.0%
! TCAGTAGTTTATTTGTTGAC+AGG - chr5_4:64848606-64848625 Msa0864470:intron 30.0%
AATGTCTAAACTACACATCT+TGG - chr5_4:64848646-64848665 Msa0864470:intron 30.0%
! TATGTTGTTTGAAGTAAGCA+TGG + chr5_4:64848689-64848708 None:intergenic 30.0%
ATTTAGACAAAGTTAGCTAC+TGG - chr5_4:64848748-64848767 Msa0864470:CDS 30.0%
! TATGTTGTTTGAAGTAAGCA+TGG + chr5_4:64848689-64848708 None:intergenic 30.0%
ATTTAGACAAAGTTAGCTAC+TGG - chr5_4:64848748-64848767 Msa0864470:CDS 30.0%
AGGAAATCAAATTCCTTACA+AGG - chr5_4:64848987-64849006 Msa0864470:intron 30.0%
ACTTGAGATTGGAAATCAAT+TGG - chr5_4:64849087-64849106 Msa0864470:intron 30.0%
! TTATTAATCCATTTGTTGGC+TGG - chr5_4:64849211-64849230 Msa0864470:intron 30.0%
TGGCTTAAAAATTGATGCAT+TGG + chr5_4:64849454-64849473 None:intergenic 30.0%
!! CATCAATTTTTAAGCCACAA+TGG - chr5_4:64849457-64849476 Msa0864470:intron 30.0%
! TAGAGAATTAAGTTGCAAAC+CGG + chr5_4:64850013-64850032 None:intergenic 30.0%
! TGTTATTTACACTTCAGATC+AGG + chr5_4:64850336-64850355 None:intergenic 30.0%
! AACAACTACATGTTTCTAAG+GGG + chr5_4:64850496-64850515 None:intergenic 30.0%
! CAACAACTACATGTTTCTAA+GGG + chr5_4:64850497-64850516 None:intergenic 30.0%
AACATGTAGTTGTTGCTATA+AGG - chr5_4:64850502-64850521 Msa0864470:CDS 30.0%
TGGCTTAGTATAATATCATC+AGG + chr5_4:64850540-64850559 None:intergenic 30.0%
GCTATCAAAATGTAGTATAC+AGG + chr5_4:64850615-64850634 None:intergenic 30.0%
! ATGGTTTTCCGTACATTGTT+GGG + chr5_4:64842305-64842324 None:intergenic 35.0%
!! AATAAGCTGTTTCTCCAAAC+AGG - chr5_4:64842869-64842888 Msa0864470:CDS 35.0%
!! ATAAGCTGTTTCTCCAAACA+GGG - chr5_4:64842870-64842889 Msa0864470:CDS 35.0%
AAACAACTAAACCCTTCGAA+GGG + chr5_4:64843255-64843274 None:intergenic 35.0%
AAAACAACTAAACCCTTCGA+AGG + chr5_4:64843256-64843275 None:intergenic 35.0%
CTTAACTCCTCTACTAGTAA+TGG + chr5_4:64843562-64843581 None:intergenic 35.0%
CATTACTAGTAGAGGAGTTA+AGG - chr5_4:64843560-64843579 Msa0864470:intron 35.0%
TAAGGAGCAGAGTAATATTG+AGG - chr5_4:64843578-64843597 Msa0864470:intron 35.0%
CCATGTATATTCAGACAGTT+AGG + chr5_4:64843848-64843867 None:intergenic 35.0%
CCTAACTGTCTGAATATACA+TGG - chr5_4:64843845-64843864 Msa0864470:intron 35.0%
! ACCTGTTTTATGTTTTGCAG+TGG - chr5_4:64843943-64843962 Msa0864470:intron 35.0%
! CCTGTTTTATGTTTTGCAGT+GGG - chr5_4:64843944-64843963 Msa0864470:intron 35.0%
!!! GTTTTTAACTTGGCCATTGT+AGG - chr5_4:64844066-64844085 Msa0864470:intron 35.0%
AAATGTACCAGGAAAGTTTG+AGG + chr5_4:64844176-64844195 None:intergenic 35.0%
!! CTTTTTAGAGGCTAGATAGT+AGG - chr5_4:64844202-64844221 Msa0864470:intron 35.0%
AATCTTCATAAACGAAGCAG+AGG + chr5_4:64844243-64844262 None:intergenic 35.0%
TTCAAACATCTCTTGCTAGA+TGG - chr5_4:64844616-64844635 Msa0864470:intron 35.0%
AAATTACAACCTTGAGGCTT+GGG + chr5_4:64844758-64844777 None:intergenic 35.0%
GATGCAGTTTATTTGACAAG+TGG - chr5_4:64845169-64845188 Msa0864470:intron 35.0%
AAAGGTTTGAGTAGGAATAG+TGG + chr5_4:64845417-64845436 None:intergenic 35.0%
AGTTCTTGTAATTGAGGCAA+AGG + chr5_4:64845435-64845454 None:intergenic 35.0%
TTGGTCAGTTCTTGTAATTG+AGG + chr5_4:64845441-64845460 None:intergenic 35.0%
TCAATTACAAGAACTGACCA+AGG - chr5_4:64845440-64845459 Msa0864470:intron 35.0%
! AACTTGAGAGAGATTTTCCT+TGG + chr5_4:64845460-64845479 None:intergenic 35.0%
CAACATCAAATTTCTGTACC+GGG - chr5_4:64845485-64845504 Msa0864470:intron 35.0%
TTGACTTTGGTATTGCATTC+GGG + chr5_4:64845709-64845728 None:intergenic 35.0%
TAAACCAGAAATTGAGGAGA+TGG + chr5_4:64845882-64845901 None:intergenic 35.0%
!! ATCTCCTCAATTTCTGGTTT+AGG - chr5_4:64845881-64845900 Msa0864470:intron 35.0%
! TATATGGTCATTGTTTTCCC+TGG - chr5_4:64845949-64845968 Msa0864470:intron 35.0%
AATATTGTCCTCCAATACCA+GGG + chr5_4:64845969-64845988 None:intergenic 35.0%
TAATATTGTCCTCCAATACC+AGG + chr5_4:64845970-64845989 None:intergenic 35.0%
TTCAGTTCAATTACTCTCGA+GGG + chr5_4:64845994-64846013 None:intergenic 35.0%
AAATCCAAACACGAACAATC+AGG + chr5_4:64846099-64846118 None:intergenic 35.0%
AAATCTGGGAGTTAACTGAT+AGG + chr5_4:64846126-64846145 None:intergenic 35.0%
CAGTATGATTCCATCAAATG+TGG + chr5_4:64846167-64846186 None:intergenic 35.0%
!! AACAGAATTTTAGGTGACTC+TGG + chr5_4:64846197-64846216 None:intergenic 35.0%
TTAAAAGGTGGTCTGACATT+TGG - chr5_4:64846413-64846432 Msa0864470:CDS 35.0%
! ACACTGCTAGATTTTTCACT+TGG + chr5_4:64846458-64846477 None:intergenic 35.0%
GAAAAATCTAGCAGTGTAAC+TGG - chr5_4:64846461-64846480 Msa0864470:CDS 35.0%
! ACCATTTAAAAGGTGTGAGA+GGG + chr5_4:64846620-64846639 None:intergenic 35.0%
AATGGTGTATGAGTGATGTA+TGG - chr5_4:64846634-64846653 Msa0864470:intron 35.0%
TGTATGAGTGATGTATGGTT+GGG - chr5_4:64846639-64846658 Msa0864470:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr5_4:64846761-64846780 None:intergenic 35.0%
AGTAGTGTGCAGAGTATAAT+TGG + chr5_4:64846865-64846884 None:intergenic 35.0%
!! TTTTGCCTTACATTTTGGGA+CGG - chr5_4:64847277-64847296 Msa0864470:CDS 35.0%
TCAAACATCCCTTAATGAAG+AGG + chr5_4:64847318-64847337 None:intergenic 35.0%
ATTAAGGGATGTTTGAGAGT+AGG - chr5_4:64847322-64847341 Msa0864470:CDS 35.0%
TTAAGGGATGTTTGAGAGTA+GGG - chr5_4:64847323-64847342 Msa0864470:CDS 35.0%
AATGAAAGCCAGTGTTTGTT+TGG - chr5_4:64847433-64847452 Msa0864470:CDS 35.0%
ATGAAAGCCAGTGTTTGTTT+GGG - chr5_4:64847434-64847453 Msa0864470:CDS 35.0%
! TTTGAGTTACCCCAAATTAG+GGG - chr5_4:64847592-64847611 Msa0864470:CDS 35.0%
!! GCATGAGTTTATTTTCTCCA+TGG + chr5_4:64847626-64847645 None:intergenic 35.0%
!! TTGGGCTTTGTTTGGAAATT+GGG + chr5_4:64847719-64847738 None:intergenic 35.0%
!! AGTTATTCTTGGGCTTTGTT+TGG + chr5_4:64847727-64847746 None:intergenic 35.0%
! TCTGAAGGCATATCTATAAC+TGG - chr5_4:64847990-64848009 Msa0864470:intron 35.0%
TTTGAACAGTCAGAATTGGA+TGG + chr5_4:64848070-64848089 None:intergenic 35.0%
! GTTCAAAGTGCTCAAAACTA+TGG - chr5_4:64848083-64848102 Msa0864470:intron 35.0%
AGGAACTTACAACAAAGGAA+GGG + chr5_4:64848193-64848212 None:intergenic 35.0%
AAGGAACTTACAACAAAGGA+AGG + chr5_4:64848194-64848213 None:intergenic 35.0%
GATGAAGGAACTTACAACAA+AGG + chr5_4:64848198-64848217 None:intergenic 35.0%
! CTGACTTGTATTCATATGGT+TGG - chr5_4:64848310-64848329 Msa0864470:intron 35.0%
ACTAAAAGCTATTTGCTCTG+AGG - chr5_4:64848427-64848446 Msa0864470:intron 35.0%
GAACCTTCAAACAATACCAA+GGG + chr5_4:64848575-64848594 None:intergenic 35.0%
TGAACCTTCAAACAATACCA+AGG + chr5_4:64848576-64848595 None:intergenic 35.0%
! AGTTTATTTGTTGACAGGCT+TGG - chr5_4:64848611-64848630 Msa0864470:intron 35.0%
TTAGCTACTGGTCAATGAAA+AGG - chr5_4:64848760-64848779 Msa0864470:intron 35.0%
GGTCAATGAAAAGGAATAAC+TGG - chr5_4:64848769-64848788 Msa0864470:intron 35.0%
CTGGTCAATGAAAAAGAGTA+AGG - chr5_4:64848788-64848807 Msa0864470:intron 35.0%
TTAGCTACTGGTCAATGAAA+AGG - chr5_4:64848760-64848779 Msa0864470:intron 35.0%
TAGCTACTGGTCAATGAAAA+GGG - chr5_4:64848761-64848780 Msa0864470:intron 35.0%
TGGTGGCCTAAAATAAGAAA+CGG + chr5_4:64849377-64849396 None:intergenic 35.0%
AAAATTGATGCATTGGAGAC+AGG + chr5_4:64849447-64849466 None:intergenic 35.0%
ACAGGAAATATGGCTCATAT+TGG - chr5_4:64849580-64849599 Msa0864470:intron 35.0%
GAAAACCAGATCTATACAAC+TGG - chr5_4:64849712-64849731 Msa0864470:intron 35.0%
! TTTGAAGTAATAGGCACAGA+TGG + chr5_4:64849782-64849801 None:intergenic 35.0%
!!! TAGAAGAATTTTACCGACTC+TGG - chr5_4:64849809-64849828 Msa0864470:intron 35.0%
! TTTTTCTTTCTGCAGAGTGA+AGG - chr5_4:64849949-64849968 Msa0864470:intron 35.0%
TATATAACCTTTCCCCTCAA+GGG - chr5_4:64850031-64850050 Msa0864470:intron 35.0%
GAATTCCAATTGATCTGAGA+AGG + chr5_4:64850225-64850244 None:intergenic 35.0%
! TAGGATGGGAAACATTTTCT+TGG - chr5_4:64850252-64850271 Msa0864470:intron 35.0%
AATCCATGAAGAATGAACAC+TGG - chr5_4:64850310-64850329 Msa0864470:intron 35.0%
! ACAACTACATGTTTCTAAGG+GGG + chr5_4:64850495-64850514 None:intergenic 35.0%
! GCAACAACTACATGTTTCTA+AGG + chr5_4:64850498-64850517 None:intergenic 35.0%
ATACAGGTGAGAATTGAGAA+CGG + chr5_4:64850599-64850618 None:intergenic 35.0%
! CTCTCTCTCTAAAAACACAG+AGG - chr5_4:64842194-64842213 Msa0864470:three_prime_UTR 40.0%
! TCTCTCTCTGAAAGAATGAG+CGG - chr5_4:64842239-64842258 Msa0864470:three_prime_UTR 40.0%
! TGGTTTTCCGTACATTGTTG+GGG + chr5_4:64842304-64842323 None:intergenic 40.0%
! GATGGTTTTCCGTACATTGT+TGG + chr5_4:64842306-64842325 None:intergenic 40.0%
!! AGTTTTGTGAGACTATTCGG+TGG - chr5_4:64842662-64842681 Msa0864470:CDS 40.0%
TCAAATAAGCCCATCCAAAC+AGG - chr5_4:64843220-64843239 Msa0864470:CDS 40.0%
CAGAGTAATATTGAGGTCGA+GGG - chr5_4:64843585-64843604 Msa0864470:intron 40.0%
TTAGTATTATGCTGGGAGTG+GGG + chr5_4:64843620-64843639 None:intergenic 40.0%
GTTAGTATTATGCTGGGAGT+GGG + chr5_4:64843621-64843640 None:intergenic 40.0%
TGTTAGTATTATGCTGGGAG+TGG + chr5_4:64843622-64843641 None:intergenic 40.0%
AGCTCATAACACAACAAGAG+TGG + chr5_4:64843787-64843806 None:intergenic 40.0%
TCAGACAGTTAGGGAAAATG+AGG + chr5_4:64843838-64843857 None:intergenic 40.0%
CCCACTGCAAAACATAAAAC+AGG + chr5_4:64843947-64843966 None:intergenic 40.0%
GAGTCTAGATCAAAACAACG+TGG - chr5_4:64844112-64844131 Msa0864470:intron 40.0%
TAGATCAAAACAACGTGGAC+AGG - chr5_4:64844117-64844136 Msa0864470:intron 40.0%
AGATCAAAACAACGTGGACA+GGG - chr5_4:64844118-64844137 Msa0864470:intron 40.0%
GTTTGTATGACGTCTACACT+AGG - chr5_4:64844336-64844355 Msa0864470:intron 40.0%
AAACATCTCTTGCTAGATGG+TGG - chr5_4:64844619-64844638 Msa0864470:intron 40.0%
GAGAAACCTTCCTATTCGAA+GGG - chr5_4:64844651-64844670 Msa0864470:intron 40.0%
! CATTTTCCCTTCGAATAGGA+AGG + chr5_4:64844660-64844679 None:intergenic 40.0%
CTTCCTATTCGAAGGGAAAA+TGG - chr5_4:64844658-64844677 Msa0864470:intron 40.0%
! ACTCCATTTTCCCTTCGAAT+AGG + chr5_4:64844664-64844683 None:intergenic 40.0%
AATTACAACCTTGAGGCTTG+GGG + chr5_4:64844757-64844776 None:intergenic 40.0%
GAAATTACAACCTTGAGGCT+TGG + chr5_4:64844759-64844778 None:intergenic 40.0%
TCACGATTCTTCAATTGCAG+AGG - chr5_4:64845218-64845237 Msa0864470:intron 40.0%
!! GATTGATTTGCAGCACTATG+GGG + chr5_4:64845257-64845276 None:intergenic 40.0%
!! GGATTGATTTGCAGCACTAT+GGG + chr5_4:64845258-64845277 None:intergenic 40.0%
!! TGGATTGATTTGCAGCACTA+TGG + chr5_4:64845259-64845278 None:intergenic 40.0%
AGTGCTGCAAATCAATCCAA+TGG - chr5_4:64845260-64845279 Msa0864470:intron 40.0%
GTGCTGCAAATCAATCCAAT+GGG - chr5_4:64845261-64845280 Msa0864470:intron 40.0%
AATCAATCCAATGGGAAGTC+TGG - chr5_4:64845269-64845288 Msa0864470:intron 40.0%
CAACACTACCTATGAGAGAT+TGG + chr5_4:64845310-64845329 None:intergenic 40.0%
TAGAAGCTGAACTGCTTTGT+GGG + chr5_4:64845340-64845359 None:intergenic 40.0%
TTAGAAGCTGAACTGCTTTG+TGG + chr5_4:64845341-64845360 None:intergenic 40.0%
ATTGAGGCAAAGGTTTGAGT+AGG + chr5_4:64845425-64845444 None:intergenic 40.0%
GGAAACAAACTTGAAGAAGC+TGG - chr5_4:64845629-64845648 Msa0864470:intron 40.0%
AAACTTTACCTTGAGGTGGT+TGG + chr5_4:64845808-64845827 None:intergenic 40.0%
GTTTCCATCTCCTCAATTTC+TGG - chr5_4:64845875-64845894 Msa0864470:intron 40.0%
CCTACCTAAACCAGAAATTG+AGG + chr5_4:64845888-64845907 None:intergenic 40.0%
!! CCTCAATTTCTGGTTTAGGT+AGG - chr5_4:64845885-64845904 Msa0864470:intron 40.0%
! GTCATTGTTTTCCCTGGTAT+TGG - chr5_4:64845955-64845974 Msa0864470:intron 40.0%
!! ATTGTTTTCCCTGGTATTGG+AGG - chr5_4:64845958-64845977 Msa0864470:intron 40.0%
CTTCAGTTCAATTACTCTCG+AGG + chr5_4:64845995-64846014 None:intergenic 40.0%
TAAAACAGCCAATGTCACAG+AGG - chr5_4:64846307-64846326 Msa0864470:intron 40.0%
ACTGAAGAAGATTCAGGAGT+GGG + chr5_4:64846506-64846525 None:intergenic 40.0%
GCATTCACTGAAGAAGATTC+AGG + chr5_4:64846512-64846531 None:intergenic 40.0%
! TCCCTCTCACACCTTTTAAA+TGG - chr5_4:64846616-64846635 Msa0864470:intron 40.0%
! CACCATTTAAAAGGTGTGAG+AGG + chr5_4:64846621-64846640 None:intergenic 40.0%
GTGTATGAGTGATGTATGGT+TGG - chr5_4:64846638-64846657 Msa0864470:intron 40.0%
! TGCTTACAATTTGAGACGGA+GGG + chr5_4:64846689-64846708 None:intergenic 40.0%
! TTGCTTACAATTTGAGACGG+AGG + chr5_4:64846690-64846709 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_4:64846999-64847018 None:intergenic 40.0%
GTGTGCAGAGTATAATTGGA+GGG + chr5_4:64846861-64846880 None:intergenic 40.0%
AGTGTGCAGAGTATAATTGG+AGG + chr5_4:64846862-64846881 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5_4:64846999-64847018 Msa0864470:CDS 40.0%
AAACGGAGGGAGTAAGAATT+TGG - chr5_4:64847012-64847031 Msa0864470:CDS 40.0%
ATGAGAAGGGGAATGAAAGT+AGG - chr5_4:64847371-64847390 Msa0864470:CDS 40.0%
TGAGAAGGGGAATGAAAGTA+GGG - chr5_4:64847372-64847391 Msa0864470:CDS 40.0%
AAACTCTCCCAAACAAACAC+TGG + chr5_4:64847444-64847463 None:intergenic 40.0%
!! TGTTTGGGAGAGTTTTTGAG+AGG - chr5_4:64847449-64847468 Msa0864470:CDS 40.0%
TTTGGAAATTGGGAGGGTAA+GGG + chr5_4:64847709-64847728 None:intergenic 40.0%
!! GCTTTGTTTGGAAATTGGGA+GGG + chr5_4:64847715-64847734 None:intergenic 40.0%
!! CTTGGGCTTTGTTTGGAAAT+TGG + chr5_4:64847720-64847739 None:intergenic 40.0%
!! CCTTTCTAGCACCAACTTTT+AGG + chr5_4:64847758-64847777 None:intergenic 40.0%
!! CCTAAAAGTTGGTGCTAGAA+AGG - chr5_4:64847755-64847774 Msa0864470:intron 40.0%
!! TTGGTGCTAGAAAGGTGTAT+AGG - chr5_4:64847763-64847782 Msa0864470:intron 40.0%
ATCAAGATGATCTCCGTGTT+CGG + chr5_4:64847928-64847947 None:intergenic 40.0%
! AAAGAGACACTAGCTTCTGA+AGG - chr5_4:64847975-64847994 Msa0864470:intron 40.0%
GTTAACAATACCTCCTGCTT+TGG + chr5_4:64848038-64848057 None:intergenic 40.0%
GCACTTTGAACAGTCAGAAT+TGG + chr5_4:64848074-64848093 None:intergenic 40.0%
ACTCAGCAAGTGCAATTTGA+GGG - chr5_4:64848134-64848153 Msa0864470:CDS 40.0%
!!! AGAAAGAGCGTCATTTTAGC+TGG - chr5_4:64848505-64848524 Msa0864470:intron 40.0%
AAGCCCTTGGTATTGTTTGA+AGG - chr5_4:64848569-64848588 Msa0864470:intron 40.0%
AGCATGGAGTTGACTAAACA+TGG + chr5_4:64848673-64848692 None:intergenic 40.0%
AGCATGGAGTTGACTAAACA+TGG + chr5_4:64848673-64848692 None:intergenic 40.0%
GGTCAATGAAAAGGGATAAC+TGG - chr5_4:64848946-64848965 Msa0864470:intron 40.0%
GTGTATAACCAGCCAACAAA+TGG + chr5_4:64849222-64849241 None:intergenic 40.0%
!! CTAAAATAAGAAACGGGCTG+TGG + chr5_4:64849370-64849389 None:intergenic 40.0%
!!! CACAGCCCGTTTCTTATTTT+AGG - chr5_4:64849368-64849387 Msa0864470:CDS 40.0%
GGTGGCCTAAAATAAGAAAC+GGG + chr5_4:64849376-64849395 None:intergenic 40.0%
CATATGGGAAGAAGTTAGCT+GGG + chr5_4:64849402-64849421 None:intergenic 40.0%
AGGTAAATTGGGGGGTAATA+GGG + chr5_4:64849427-64849446 None:intergenic 40.0%
ATTGGAGACAGGTAAATTGG+GGG + chr5_4:64849436-64849455 None:intergenic 40.0%
CATTGGAGACAGGTAAATTG+GGG + chr5_4:64849437-64849456 None:intergenic 40.0%
GCATTGGAGACAGGTAAATT+GGG + chr5_4:64849438-64849457 None:intergenic 40.0%
TGCATTGGAGACAGGTAAAT+TGG + chr5_4:64849439-64849458 None:intergenic 40.0%
GGCTCATATTGGAATTCCTT+CGG - chr5_4:64849591-64849610 Msa0864470:intron 40.0%
GCTCATATTGGAATTCCTTC+GGG - chr5_4:64849592-64849611 Msa0864470:intron 40.0%
TCATATATCACTCCACCTGT+TGG - chr5_4:64849616-64849635 Msa0864470:intron 40.0%
CACTGCAGTATCTTCATTTC+CGG + chr5_4:64849680-64849699 None:intergenic 40.0%
GTTGTCCAGTTGTATAGATC+TGG + chr5_4:64849720-64849739 None:intergenic 40.0%
GATCTATACAACTGGACAAC+TGG - chr5_4:64849720-64849739 Msa0864470:intron 40.0%
TATACAACTGGACAACTGGT+TGG - chr5_4:64849724-64849743 Msa0864470:intron 40.0%
AAGTAATAGGCACAGATGGA+TGG + chr5_4:64849778-64849797 None:intergenic 40.0%
GATAATGTTGAAGCCAGAGT+CGG + chr5_4:64849825-64849844 None:intergenic 40.0%
CTATATAACCTTTCCCCTCA+AGG - chr5_4:64850030-64850049 Msa0864470:intron 40.0%
TTCCAATTGATCTGAGAAGG+CGG + chr5_4:64850222-64850241 None:intergenic 40.0%
!!! TTTGGTGCTGACGATTTTGA+AGG - chr5_4:64850395-64850414 Msa0864470:intron 40.0%
!!! TTGGTGCTGACGATTTTGAA+GGG - chr5_4:64850396-64850415 Msa0864470:intron 40.0%
! CAACTACATGTTTCTAAGGG+GGG + chr5_4:64850494-64850513 None:intergenic 40.0%
AGCCAAGAGTTCAATAGAGT+TGG - chr5_4:64850555-64850574 Msa0864470:CDS 40.0%
CACCAACTCTATTGAACTCT+TGG + chr5_4:64850560-64850579 None:intergenic 40.0%
TTCCGATCCCCAACAATGTA+CGG - chr5_4:64842294-64842313 Msa0864470:three_prime_UTR 45.0%
TTCCGTACATTGTTGGGGAT+CGG + chr5_4:64842299-64842318 None:intergenic 45.0%
GATCACCGGAAAACAACACA+CGG - chr5_4:64842340-64842359 Msa0864470:three_prime_UTR 45.0%
GCTTGAGTTAAGACCCTGTT+TGG + chr5_4:64842886-64842905 None:intergenic 45.0%
GTCTTAACTCAAGCCATGTG+TGG - chr5_4:64842892-64842911 Msa0864470:intron 45.0%
! TCAAGCCATGTGTGGCTTTT+TGG - chr5_4:64842900-64842919 Msa0864470:intron 45.0%
TCAGTCCAAAAAGCCACACA+TGG + chr5_4:64842908-64842927 None:intergenic 45.0%
TACTACGGACCTGTTTGGAT+GGG + chr5_4:64843232-64843251 None:intergenic 45.0%
!! AAACCCTTCGAAGGGTACTA+CGG + chr5_4:64843247-64843266 None:intergenic 45.0%
GCAGAGTAATATTGAGGTCG+AGG - chr5_4:64843584-64843603 Msa0864470:intron 45.0%
GTAATATTGAGGTCGAGGGT+TGG - chr5_4:64843589-64843608 Msa0864470:intron 45.0%
CAGAGTGCATACTAAACGGA+TGG + chr5_4:64843890-64843909 None:intergenic 45.0%
ATTGTAGGGATTGAGCAGCA+GGG - chr5_4:64844081-64844100 Msa0864470:intron 45.0%
GATCAAAACAACGTGGACAG+GGG - chr5_4:64844119-64844138 Msa0864470:intron 45.0%
GGCTATTCCTCAAACTTTCC+TGG - chr5_4:64844166-64844185 Msa0864470:intron 45.0%
TGTATGACGTCTACACTAGG+TGG - chr5_4:64844339-64844358 Msa0864470:intron 45.0%
GGAGAAACCTTCCTATTCGA+AGG - chr5_4:64844650-64844669 Msa0864470:intron 45.0%
GAGTTCTCTCTGCAATGTGA+TGG + chr5_4:64844687-64844706 None:intergenic 45.0%
CTGTAAATCTGGCTGAGTAG+AGG + chr5_4:64844716-64844735 None:intergenic 45.0%
AAGTCTGGTCATGGTTCTTC+TGG - chr5_4:64845284-64845303 Msa0864470:intron 45.0%
TCTTCTGGCCAATCTCTCAT+AGG - chr5_4:64845299-64845318 Msa0864470:intron 45.0%
TCTGAAGAGGAACAAACACC+CGG + chr5_4:64845506-64845525 None:intergenic 45.0%
GCTGGGCCAAATCATGTTAA+AGG - chr5_4:64845608-64845627 Msa0864470:intron 45.0%
GCATCCGAGAATGATAAGTC+CGG - chr5_4:64845662-64845681 Msa0864470:intron 45.0%
CATCCGAGAATGATAAGTCC+GGG - chr5_4:64845663-64845682 Msa0864470:intron 45.0%
! GCTTGTTGAATTCATGGACC+CGG + chr5_4:64845684-64845703 None:intergenic 45.0%
! CGGGTTGCTTGTTGAATTCA+TGG + chr5_4:64845690-64845709 None:intergenic 45.0%
GAAGACGATGAGAGTTGCAA+GGG + chr5_4:64845761-64845780 None:intergenic 45.0%
TGAAGACGATGAGAGTTGCA+AGG + chr5_4:64845762-64845781 None:intergenic 45.0%
TGAACTGAAGTAAAGCCCAC+CGG - chr5_4:64846005-64846024 Msa0864470:intron 45.0%
TCAGCCTGATTGTTCGTGTT+TGG - chr5_4:64846092-64846111 Msa0864470:intron 45.0%
AACATCTGCAAACGCATCGA+CGG + chr5_4:64846285-64846304 None:intergenic 45.0%
AGTTGAGACCTCTGTGACAT+TGG + chr5_4:64846318-64846337 None:intergenic 45.0%
TCAGGCACTTGGAAATGGTT+TGG + chr5_4:64846389-64846408 None:intergenic 45.0%
AAACCATTTCCAAGTGCCTG+AGG - chr5_4:64846388-64846407 Msa0864470:CDS 45.0%
!!! CTTTTAAAGCCTCAGGCACT+TGG + chr5_4:64846400-64846419 None:intergenic 45.0%
!! CAAGTGCCTGAGGCTTTAAA+AGG - chr5_4:64846398-64846417 Msa0864470:CDS 45.0%
!!! AGACCACCTTTTAAAGCCTC+AGG + chr5_4:64846407-64846426 None:intergenic 45.0%
CACTGAAGAAGATTCAGGAG+TGG + chr5_4:64846507-64846526 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5_4:64846998-64847017 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5_4:64846998-64847017 Msa0864470:CDS 45.0%
TTCCTCCGTCCCAAAATGTA+AGG + chr5_4:64847285-64847304 None:intergenic 45.0%
AGGGTTTGATGGGAATGAGA+AGG - chr5_4:64847357-64847376 Msa0864470:CDS 45.0%
GGGTTTGATGGGAATGAGAA+GGG - chr5_4:64847358-64847377 Msa0864470:CDS 45.0%
GGTTTGATGGGAATGAGAAG+GGG - chr5_4:64847359-64847378 Msa0864470:CDS 45.0%
AGAGGAGAAGAGGGTTTGAT+GGG - chr5_4:64847398-64847417 Msa0864470:CDS 45.0%
AGGGTTTGATGGGAATGAGA+AGG - chr5_4:64847357-64847376 Msa0864470:CDS 45.0%
GGGTTTGATGGGAATGAGAA+GGG - chr5_4:64847358-64847377 Msa0864470:CDS 45.0%
GGTTTGATGGGAATGAGAAG+GGG - chr5_4:64847359-64847378 Msa0864470:CDS 45.0%
!! AGAGTTTTTGAGAGGTGTGG+AGG - chr5_4:64847457-64847476 Msa0864470:CDS 45.0%
!! GAGTTTTTGAGAGGTGTGGA+GGG - chr5_4:64847458-64847477 Msa0864470:CDS 45.0%
!! AGTTTTTGAGAGGTGTGGAG+GGG - chr5_4:64847459-64847478 Msa0864470:CDS 45.0%
GAATTGGGGGAGACTTTAGA+GGG + chr5_4:64847567-64847586 None:intergenic 45.0%
TGAATTGGGGGAGACTTTAG+AGG + chr5_4:64847568-64847587 None:intergenic 45.0%
GGAAAGAGGAGAGAATGAAG+GGG + chr5_4:64847670-64847689 None:intergenic 45.0%
GGGAAAGAGGAGAGAATGAA+GGG + chr5_4:64847671-64847690 None:intergenic 45.0%
GTTTGGAAATTGGGAGGGTA+AGG + chr5_4:64847710-64847729 None:intergenic 45.0%
!! GGCTTTGTTTGGAAATTGGG+AGG + chr5_4:64847716-64847735 None:intergenic 45.0%
TCAAGATGATCTCCGTGTTC+GGG + chr5_4:64847927-64847946 None:intergenic 45.0%
AAAGATTGAGCAGCCAAAGC+AGG - chr5_4:64848022-64848041 Msa0864470:intron 45.0%
!! GAGGTATTGTTAACTCCCGA+GGG - chr5_4:64848044-64848063 Msa0864470:intron 45.0%
GACTCAGCAAGTGCAATTTG+AGG - chr5_4:64848133-64848152 Msa0864470:CDS 45.0%
ATTTGAGGGTAGTGAGCTTC+AGG - chr5_4:64848148-64848167 Msa0864470:CDS 45.0%
ACAACAAAGGAAGGGAAGTG+TGG + chr5_4:64848185-64848204 None:intergenic 45.0%
!! TTTGCTCTGAGGTGATTTCC+CGG - chr5_4:64848438-64848457 Msa0864470:intron 45.0%
ATTGCAGACTGCAAGTTCTC+AGG - chr5_4:64849294-64849313 Msa0864470:intron 45.0%
ACAGGTATAGAGCTCTGTAG+AGG + chr5_4:64849343-64849362 None:intergenic 45.0%
AAGAAGTTAGCTGGGTATGG+TGG + chr5_4:64849394-64849413 None:intergenic 45.0%
CCATATGGGAAGAAGTTAGC+TGG + chr5_4:64849403-64849422 None:intergenic 45.0%
CCAGCTAACTTCTTCCCATA+TGG - chr5_4:64849400-64849419 Msa0864470:intron 45.0%
GGTAAATTGGGGGGTAATAG+GGG + chr5_4:64849426-64849445 None:intergenic 45.0%
CAGGTAAATTGGGGGGTAAT+AGG + chr5_4:64849428-64849447 None:intergenic 45.0%
TTGGAGACAGGTAAATTGGG+GGG + chr5_4:64849435-64849454 None:intergenic 45.0%
AGATACATGTTGCCAGCTGA+TGG + chr5_4:64849496-64849515 None:intergenic 45.0%
TGGAGCGAACACAGGAAATA+TGG - chr5_4:64849570-64849589 Msa0864470:intron 45.0%
GGAGTGATATATGATCCCGA+AGG + chr5_4:64849610-64849629 None:intergenic 45.0%
ATAGGCACAGATGGATGGAA+AGG + chr5_4:64849773-64849792 None:intergenic 45.0%
GTTGCAAACCGGACATATCT+TGG + chr5_4:64850002-64850021 None:intergenic 45.0%
TTTCCCGGTATCTATCAACC+AGG - chr5_4:64850096-64850115 Msa0864470:intron 45.0%
TTCCCGGTATCTATCAACCA+GGG - chr5_4:64850097-64850116 Msa0864470:intron 45.0%
AGCTTGAGACTGCTGCAAAA+GGG + chr5_4:64850145-64850164 None:intergenic 45.0%
TACCGCCTTCTCAGATCAAT+TGG - chr5_4:64850217-64850236 Msa0864470:intron 45.0%
AGGCCAGTGTTCATTCTTCA+TGG + chr5_4:64850316-64850335 None:intergenic 45.0%
! CTCTCTGAAAGAATGAGCGG+CGG - chr5_4:64842242-64842261 Msa0864470:three_prime_UTR 50.0%
GATCTCTCTGATGTCGTGGA+TGG + chr5_4:64842324-64842343 None:intergenic 50.0%
CACGACATCAGAGAGATCAC+CGG - chr5_4:64842326-64842345 Msa0864470:three_prime_UTR 50.0%
!!! GTCGTCCGTGTGTTGTTTTC+CGG + chr5_4:64842348-64842367 None:intergenic 50.0%
GTACTACGGACCTGTTTGGA+TGG + chr5_4:64843233-64843252 None:intergenic 50.0%
!! AAGGGTACTACGGACCTGTT+TGG + chr5_4:64843237-64843256 None:intergenic 50.0%
CTGCTGCTCAATCCCTACAA+TGG + chr5_4:64844082-64844101 None:intergenic 50.0%
CATTGTAGGGATTGAGCAGC+AGG - chr5_4:64844080-64844099 Msa0864470:intron 50.0%
ATTGAGCAGCAGGGTTTCTG+AGG - chr5_4:64844090-64844109 Msa0864470:intron 50.0%
AAAACAACGTGGACAGGGGA+GGG - chr5_4:64844123-64844142 Msa0864470:intron 50.0%
! GAGGGGAGCAAGAGGTTTTT+CGG - chr5_4:64844141-64844160 Msa0864470:intron 50.0%
! AGGGGAGCAAGAGGTTTTTC+GGG - chr5_4:64844142-64844161 Msa0864470:intron 50.0%
! CATCTCTTGCTAGATGGTGG+TGG - chr5_4:64844622-64844641 Msa0864470:intron 50.0%
TCCAATGGGAAGTCTGGTCA+TGG - chr5_4:64845275-64845294 Msa0864470:intron 50.0%
ACCATGACCAGACTTCCCAT+TGG + chr5_4:64845279-64845298 None:intergenic 50.0%
GCTGCAACAACAACAGCTTG+AGG + chr5_4:64845392-64845411 None:intergenic 50.0%
TTCCTCTTCAGATCCTGTGC+TGG - chr5_4:64845514-64845533 Msa0864470:intron 50.0%
CCAGGAATCTGGGAGATAGA+TGG + chr5_4:64845542-64845561 None:intergenic 50.0%
CCATCTATCTCCCAGATTCC+TGG - chr5_4:64845539-64845558 Msa0864470:intron 50.0%
ATCTCCCAGATTCCTGGTGT+TGG - chr5_4:64845545-64845564 Msa0864470:intron 50.0%
GTGCTGTCAGTAGGGAAGTA+GGG - chr5_4:64845570-64845589 Msa0864470:intron 50.0%
GATTTGGCCCAGCAGATATC+CGG + chr5_4:64845601-64845620 None:intergenic 50.0%
GGACCCGGACTTATCATTCT+CGG + chr5_4:64845669-64845688 None:intergenic 50.0%
GTTGCAAGGGCTCAGATAAC+CGG + chr5_4:64845748-64845767 None:intergenic 50.0%
GAACTGAAGTAAAGCCCACC+GGG - chr5_4:64846006-64846025 Msa0864470:intron 50.0%
ATACTTTGGCTAGACCCGGT+GGG + chr5_4:64846023-64846042 None:intergenic 50.0%
ACCGGGTCTAGCCAAAGTAT+GGG - chr5_4:64846023-64846042 Msa0864470:intron 50.0%
TCCCATACTTTGGCTAGACC+CGG + chr5_4:64846027-64846046 None:intergenic 50.0%
! ACATCTGCAAACGCATCGAC+GGG + chr5_4:64846284-64846303 None:intergenic 50.0%
CTCAACTCAGTTGACTGCAC+AGG + chr5_4:64846350-64846369 None:intergenic 50.0%
CTGTGCAGTCAACTGAGTTG+AGG - chr5_4:64846348-64846367 Msa0864470:CDS 50.0%
AAGCCTCAGGCACTTGGAAA+TGG + chr5_4:64846394-64846413 None:intergenic 50.0%
!! GTGCCTGAGGCTTTAAAAGG+TGG - chr5_4:64846401-64846420 Msa0864470:CDS 50.0%
!!! TGCCTTACATTTTGGGACGG+AGG - chr5_4:64847280-64847299 Msa0864470:CDS 50.0%
AGGGATGTTTGAGAGTAGGG+AGG - chr5_4:64847326-64847345 Msa0864470:CDS 50.0%
TGTTTGAGAGTAGGGAGGAG+AGG - chr5_4:64847331-64847350 Msa0864470:CDS 50.0%
AGGAGAGGAGAAGGGTTTGA+TGG - chr5_4:64847346-64847365 Msa0864470:CDS 50.0%
GGAGAGGAGAAGGGTTTGAT+GGG - chr5_4:64847347-64847366 Msa0864470:CDS 50.0%
GAAGGGGAATGAAAGTAGGG+AGG - chr5_4:64847375-64847394 Msa0864470:CDS 50.0%
GGAATGAAAGTAGGGAGGAG+AGG - chr5_4:64847380-64847399 Msa0864470:CDS 50.0%
GAGAGGAGAAGAGGGTTTGA+TGG - chr5_4:64847397-64847416 Msa0864470:CDS 50.0%
!! GGGAGAGTTTTTGAGAGGTG+TGG - chr5_4:64847454-64847473 Msa0864470:CDS 50.0%
AGGAGAGAATGAAGGGGAAG+GGG + chr5_4:64847664-64847683 None:intergenic 50.0%
GAGGAGAGAATGAAGGGGAA+GGG + chr5_4:64847665-64847684 None:intergenic 50.0%
AGAGGAGAGAATGAAGGGGA+AGG + chr5_4:64847666-64847685 None:intergenic 50.0%
GGGGAAAGAGGAGAGAATGA+AGG + chr5_4:64847672-64847691 None:intergenic 50.0%
TAAGGGAAGGCAGGGTTTGA+GGG + chr5_4:64847692-64847711 None:intergenic 50.0%
GAAATTGGGAGGGTAAGGGA+AGG + chr5_4:64847705-64847724 None:intergenic 50.0%
!! GGAGGTATTGTTAACTCCCG+AGG - chr5_4:64848043-64848062 Msa0864470:intron 50.0%
AGTCAGAATTGGATGGCCCT+CGG + chr5_4:64848063-64848082 None:intergenic 50.0%
! CACTTGCTGAGTCCCTAACA+TGG + chr5_4:64848126-64848145 None:intergenic 50.0%
AGCTCTGTAGAGGTGGAGTT+GGG + chr5_4:64849333-64849352 None:intergenic 50.0%
GGTATAGAGCTCTGTAGAGG+TGG + chr5_4:64849340-64849359 None:intergenic 50.0%
GGGAAGAAGTTAGCTGGGTA+TGG + chr5_4:64849397-64849416 None:intergenic 50.0%
GCTGTTGAGGGAAACCATTG+TGG + chr5_4:64849474-64849493 None:intergenic 50.0%
CAACATGTATCTACCAGCCG+CGG - chr5_4:64849504-64849523 Msa0864470:intron 50.0%
TTCGCTCCAGCCTTGAATTG+CGG + chr5_4:64849559-64849578 None:intergenic 50.0%
! CTAGGAGCATATCCAACAGG+TGG + chr5_4:64849631-64849650 None:intergenic 50.0%
! GGACTAGGAGCATATCCAAC+AGG + chr5_4:64849634-64849653 None:intergenic 50.0%
GAGCTTCCAGTATTCACGGT+CGG + chr5_4:64849655-64849674 None:intergenic 50.0%
GGCAGAGCTTCCAGTATTCA+CGG + chr5_4:64849659-64849678 None:intergenic 50.0%
GTGAATACTGGAAGCTCTGC+CGG - chr5_4:64849658-64849677 Msa0864470:intron 50.0%
AAACCGGACATATCTTGGCC+TGG + chr5_4:64849997-64850016 None:intergenic 50.0%
AGGTGAGATGTTGCCCTTGA+GGG + chr5_4:64850047-64850066 None:intergenic 50.0%
AAGGTGAGATGTTGCCCTTG+AGG + chr5_4:64850048-64850067 None:intergenic 50.0%
!! TGCCCTGGTTGATAGATACC+GGG + chr5_4:64850102-64850121 None:intergenic 50.0%
!! CTGCCCTGGTTGATAGATAC+CGG + chr5_4:64850103-64850122 None:intergenic 50.0%
GACTGCTGCAAAAGGGTAGA+AGG + chr5_4:64850138-64850157 None:intergenic 50.0%
CAGCTTGAGACTGCTGCAAA+AGG + chr5_4:64850146-64850165 None:intergenic 50.0%
TGCTGATAAGATCCTGGAGG+CGG + chr5_4:64850195-64850214 None:intergenic 50.0%
AGCTGCTGATAAGATCCTGG+AGG + chr5_4:64850198-64850217 None:intergenic 50.0%
GGTAGCTGCTGATAAGATCC+TGG + chr5_4:64850201-64850220 None:intergenic 50.0%
AGGGGGGAAAGAACATGTGA+GGG + chr5_4:64850478-64850497 None:intergenic 50.0%
AAGGGGGGAAAGAACATGTG+AGG + chr5_4:64850479-64850498 None:intergenic 50.0%
CGGTGATCTCTCTGATGTCG+TGG + chr5_4:64842328-64842347 None:intergenic 55.0%
AGGTCCGTAGTACCCTTCGA+AGG - chr5_4:64843240-64843259 Msa0864470:CDS 55.0%
GGTCCGTAGTACCCTTCGAA+GGG - chr5_4:64843241-64843260 Msa0864470:CDS 55.0%
AAGGAGACGTGACCGCAGAA+AGG - chr5_4:64843474-64843493 Msa0864470:CDS 55.0%
CAAAACAACGTGGACAGGGG+AGG - chr5_4:64844122-64844141 Msa0864470:intron 55.0%
AAACAACGTGGACAGGGGAG+GGG - chr5_4:64844124-64844143 Msa0864470:intron 55.0%
! GGGGAGCAAGAGGTTTTTCG+GGG - chr5_4:64844143-64844162 Msa0864470:intron 55.0%
!! GGGAGCAAGAGGTTTTTCGG+GGG - chr5_4:64844144-64844163 Msa0864470:intron 55.0%
!!! GGAGCAAGAGGTTTTTCGGG+GGG - chr5_4:64844145-64844164 Msa0864470:intron 55.0%
!! CTCTTGCTAGATGGTGGTGG+TGG - chr5_4:64844625-64844644 Msa0864470:intron 55.0%
!! TTGCTAGATGGTGGTGGTGG+TGG - chr5_4:64844628-64844647 Msa0864470:intron 55.0%
!! TGCTAGATGGTGGTGGTGGT+GGG - chr5_4:64844629-64844648 Msa0864470:intron 55.0%
TGCCAGCACAGGATCTGAAG+AGG + chr5_4:64845519-64845538 None:intergenic 55.0%
! GAGATAGATGGTGCCAGCAC+AGG + chr5_4:64845530-64845549 None:intergenic 55.0%
! TCCCAGATTCCTGGTGTTGG+CGG - chr5_4:64845548-64845567 Msa0864470:intron 55.0%
ACCGCCAACACCAGGAATCT+GGG + chr5_4:64845552-64845571 None:intergenic 55.0%
!! TGTTGGCGGTGCTGTCAGTA+GGG - chr5_4:64845562-64845581 Msa0864470:intron 55.0%
! GGTGCTGTCAGTAGGGAAGT+AGG - chr5_4:64845569-64845588 Msa0864470:intron 55.0%
GTAGGGAAGTAGGGAGTGAC+CGG - chr5_4:64845579-64845598 Msa0864470:intron 55.0%
GGAGTGACCGGATATCTGCT+GGG - chr5_4:64845591-64845610 Msa0864470:intron 55.0%
! AGGTGGTTGGCTAACGCAAC+TGG + chr5_4:64845795-64845814 None:intergenic 55.0%
TGCGTTAGCCAACCACCTCA+AGG - chr5_4:64845797-64845816 Msa0864470:intron 55.0%
CATACTTTGGCTAGACCCGG+TGG + chr5_4:64846024-64846043 None:intergenic 55.0%
CACCGGGTCTAGCCAAAGTA+TGG - chr5_4:64846022-64846041 Msa0864470:intron 55.0%
AGAGTAGGGAGGAGAGGAGA+AGG - chr5_4:64847337-64847356 Msa0864470:CDS 55.0%
GAGTAGGGAGGAGAGGAGAA+GGG - chr5_4:64847338-64847357 Msa0864470:CDS 55.0%
AGTAGGGAGGAGAGGAGAAG+AGG - chr5_4:64847339-64847358 Msa0864470:CDS 55.0%
GTAGGGAGGAGAGGAGAAGA+GGG - chr5_4:64847389-64847408 Msa0864470:CDS 55.0%
! TTTGAGAGGTGTGGAGGGGA+AGG - chr5_4:64847463-64847482 Msa0864470:CDS 55.0%
GGTGTGGAGGGGAAGGTTTA+TGG - chr5_4:64847470-64847489 Msa0864470:CDS 55.0%
! GGGGAGACTTTAGAGGGTTG+TGG + chr5_4:64847561-64847580 None:intergenic 55.0%
GAGAGAATGAAGGGGAAGGG+GGG + chr5_4:64847662-64847681 None:intergenic 55.0%
GGAGAGAATGAAGGGGAAGG+GGG + chr5_4:64847663-64847682 None:intergenic 55.0%
AAGGGAAGGCAGGGTTTGAG+GGG + chr5_4:64847691-64847710 None:intergenic 55.0%
GTAAGGGAAGGCAGGGTTTG+AGG + chr5_4:64847693-64847712 None:intergenic 55.0%
TGATCTCCGTGTTCGGGCAA+TGG + chr5_4:64847921-64847940 None:intergenic 55.0%
GATTGAGCAGCCAAAGCAGG+AGG - chr5_4:64848025-64848044 Msa0864470:intron 55.0%
GTCAGAATTGGATGGCCCTC+GGG + chr5_4:64848062-64848081 None:intergenic 55.0%
TGTAGAGGTGGAGTTGGGCT+GGG + chr5_4:64849328-64849347 None:intergenic 55.0%
GAGCTCTGTAGAGGTGGAGT+TGG + chr5_4:64849334-64849353 None:intergenic 55.0%
!! GAAACGGGCTGTGGAGAAAC+AGG + chr5_4:64849361-64849380 None:intergenic 55.0%
GGGGGTAATAGGGGCCATAT+GGG + chr5_4:64849417-64849436 None:intergenic 55.0%
TTCCCTCAACAGCCATCAGC+TGG - chr5_4:64849481-64849500 Msa0864470:intron 55.0%
TGCCAGCTGATGGCTGTTGA+GGG + chr5_4:64849486-64849505 None:intergenic 55.0%
TTGCCAGCTGATGGCTGTTG+AGG + chr5_4:64849487-64849506 None:intergenic 55.0%
GTTCCCTCTCCCGCAATTCA+AGG - chr5_4:64849546-64849565 Msa0864470:intron 55.0%
CAGCCTTGAATTGCGGGAGA+GGG + chr5_4:64849552-64849571 None:intergenic 55.0%
TCGCTCCAGCCTTGAATTGC+GGG + chr5_4:64849558-64849577 None:intergenic 55.0%
TTCAAGGCTGGAGCGAACAC+AGG - chr5_4:64849562-64849581 Msa0864470:intron 55.0%
CCAGTATTCACGGTCGGACT+AGG + chr5_4:64849649-64849668 None:intergenic 55.0%
CCTAGTCCGACCGTGAATAC+TGG - chr5_4:64849646-64849665 Msa0864470:intron 55.0%
AGAGTGAAGGCTCTGCTGTG+TGG - chr5_4:64849962-64849981 Msa0864470:intron 55.0%
GCTGTGTGGATACATGCACC+AGG - chr5_4:64849976-64849995 Msa0864470:intron 55.0%
GCACCAGGCCAAGATATGTC+CGG - chr5_4:64849991-64850010 Msa0864470:intron 55.0%
GATGTTGCCCTTGAGGGGAA+AGG + chr5_4:64850041-64850060 None:intergenic 55.0%
GGTGAGATGTTGCCCTTGAG+GGG + chr5_4:64850046-64850065 None:intergenic 55.0%
GGTGAAGTTACTGTCTGCCC+TGG + chr5_4:64850117-64850136 None:intergenic 55.0%
AGCAGTCTCAAGCTGTCGCT+GGG - chr5_4:64850151-64850170 Msa0864470:intron 55.0%
GCTGGGCCTGTTGAAACTGT+AGG - chr5_4:64850168-64850187 Msa0864470:intron 55.0%
GCTGATAAGATCCTGGAGGC+GGG + chr5_4:64850194-64850213 None:intergenic 55.0%
!! TGAAGGGTGCTGCTAGTTGC+AGG - chr5_4:64850412-64850431 Msa0864470:intron 55.0%
ATGCAGCACCCCAAGCCTCA+AGG - chr5_4:64844746-64844765 Msa0864470:CDS 60.0%
CACCGCCAACACCAGGAATC+TGG + chr5_4:64845553-64845572 None:intergenic 60.0%
!! GTGTTGGCGGTGCTGTCAGT+AGG - chr5_4:64845561-64845580 Msa0864470:intron 60.0%
GGGAGTGACCGGATATCTGC+TGG - chr5_4:64845590-64845609 Msa0864470:intron 60.0%
GGCAGGGTTTGAGGGGAAAG+AGG + chr5_4:64847684-64847703 None:intergenic 60.0%
TGGGAGGGTAAGGGAAGGCA+GGG + chr5_4:64847700-64847719 None:intergenic 60.0%
TTGGGAGGGTAAGGGAAGGC+AGG + chr5_4:64847701-64847720 None:intergenic 60.0%
GTTCGGGCAATGGCACGCTT+TGG + chr5_4:64847911-64847930 None:intergenic 60.0%
! AGCGTGCCATTGCCCGAACA+CGG - chr5_4:64847912-64847931 Msa0864470:intron 60.0%
CTGTAGAGGTGGAGTTGGGC+TGG + chr5_4:64849329-64849348 None:intergenic 60.0%
GGGGGGTAATAGGGGCCATA+TGG + chr5_4:64849418-64849437 None:intergenic 60.0%
CCAGCCTTGAATTGCGGGAG+AGG + chr5_4:64849553-64849572 None:intergenic 60.0%
CCTCTCCCGCAATTCAAGGC+TGG - chr5_4:64849550-64849569 Msa0864470:intron 60.0%
TCTCACCTTCCCCCAGACAC+AGG - chr5_4:64850059-64850078 Msa0864470:intron 60.0%
TCCGTGAGCAGCCTGTGTCT+GGG + chr5_4:64850073-64850092 None:intergenic 60.0%
! GCTGCTCACGGAGCATTTCC+CGG - chr5_4:64850081-64850100 Msa0864470:intron 60.0%
CAGCAGTCTCAAGCTGTCGC+TGG - chr5_4:64850150-64850169 Msa0864470:intron 60.0%
GGCGGGCCTACAGTTTCAAC+AGG + chr5_4:64850177-64850196 None:intergenic 60.0%
GAAAGAATGAGCGGCGGCCG+CGG - chr5_4:64842248-64842267 Msa0864470:three_prime_UTR 65.0%
!! TGGTGGTGGTGGCGGGTCTA+GGG - chr5_4:64842271-64842290 Msa0864470:three_prime_UTR 65.0%
CTGACAGCACCGCCAACACC+AGG + chr5_4:64845560-64845579 None:intergenic 65.0%
AGCAGCCTGTGTCTGGGGGA+AGG + chr5_4:64850067-64850086 None:intergenic 65.0%
CGTGAGCAGCCTGTGTCTGG+GGG + chr5_4:64850071-64850090 None:intergenic 65.0%
CCGTGAGCAGCCTGTGTCTG+GGG + chr5_4:64850072-64850091 None:intergenic 65.0%
CCCCAGACACAGGCTGCTCA+CGG - chr5_4:64850069-64850088 Msa0864470:intron 65.0%
CTCCGTGAGCAGCCTGTGTC+TGG + chr5_4:64850074-64850093 None:intergenic 65.0%
GAAACTGTAGGCCCGCCTCC+AGG - chr5_4:64850180-64850199 Msa0864470:intron 65.0%
!! GTGGTGGTGGTGGCGGGTCT+AGG - chr5_4:64842270-64842289 Msa0864470:three_prime_UTR 70.0%
GGACAGGGGAGGGGAGCAAG+AGG - chr5_4:64844133-64844152 Msa0864470:intron 70.0%
GATCCCAGCAGCTGCAGCCG+CGG + chr5_4:64849524-64849543 None:intergenic 70.0%
AGAATGAGCGGCGGCCGCGG+TGG - chr5_4:64842251-64842270 Msa0864470:three_prime_UTR 75.0%
ACCCGCCACCACCACCACCG+CGG + chr5_4:64842268-64842287 None:intergenic 75.0%
CAGCCGCGGCTGCAGCTGCT+GGG - chr5_4:64849518-64849537 Msa0864470:intron 75.0%
! ATGAGCGGCGGCCGCGGTGG+TGG - chr5_4:64842254-64842273 Msa0864470:three_prime_UTR 80.0%
!!! GGCCGCGGTGGTGGTGGTGG+CGG - chr5_4:64842263-64842282 Msa0864470:three_prime_UTR 80.0%
!!! GCCGCGGTGGTGGTGGTGGC+GGG - chr5_4:64842264-64842283 Msa0864470:three_prime_UTR 80.0%
! CCAGCAGCTGCAGCCGCGGC+TGG + chr5_4:64849520-64849539 None:intergenic 80.0%
! CCAGCCGCGGCTGCAGCTGC+TGG - chr5_4:64849517-64849536 Msa0864470:intron 80.0%
!! AGCGGCGGCCGCGGTGGTGG+TGG - chr5_4:64842257-64842276 Msa0864470:three_prime_UTR 85.0%
!!! GGCGGCCGCGGTGGTGGTGG+TGG - chr5_4:64842260-64842279 Msa0864470:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 64842169 64850693 64842169 ID=Msa0864470;Name=Msa0864470
chr5_4 mRNA 64842169 64850693 64842169 ID=Msa0864470-mRNA-1;Parent=Msa0864470;Name=Msa0864470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=85|0.87|0.88|1|1|1|9|439|801
chr5_4 exon 64842169 64842898 64842169 ID=Msa0864470-mRNA-1:exon:20407;Parent=Msa0864470-mRNA-1
chr5_4 exon 64843121 64843561 64843121 ID=Msa0864470-mRNA-1:exon:20406;Parent=Msa0864470-mRNA-1
chr5_4 exon 64844660 64844957 64844660 ID=Msa0864470-mRNA-1:exon:20405;Parent=Msa0864470-mRNA-1
chr5_4 exon 64846313 64846562 64846313 ID=Msa0864470-mRNA-1:exon:20404;Parent=Msa0864470-mRNA-1
chr5_4 exon 64846960 64847624 64846960 ID=Msa0864470-mRNA-1:exon:20403;Parent=Msa0864470-mRNA-1
chr5_4 exon 64848095 64848227 64848095 ID=Msa0864470-mRNA-1:exon:20402;Parent=Msa0864470-mRNA-1
chr5_4 exon 64848675 64848774 64848675 ID=Msa0864470-mRNA-1:exon:20401;Parent=Msa0864470-mRNA-1
chr5_4 exon 64849364 64849407 64849364 ID=Msa0864470-mRNA-1:exon:20400;Parent=Msa0864470-mRNA-1
chr5_4 exon 64850425 64850693 64850425 ID=Msa0864470-mRNA-1:exon:20399;Parent=Msa0864470-mRNA-1
chr5_4 five_prime_UTR 64850609 64850693 64850609 ID=Msa0864470-mRNA-1:five_prime_utr;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64850425 64850608 64850425 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64849364 64849407 64849364 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64848675 64848774 64848675 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64848095 64848227 64848095 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64846960 64847624 64846960 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64846313 64846562 64846313 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64844660 64844957 64844660 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64843121 64843561 64843121 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 CDS 64842608 64842898 64842608 ID=Msa0864470-mRNA-1:cds;Parent=Msa0864470-mRNA-1
chr5_4 three_prime_UTR 64842169 64842607 64842169 ID=Msa0864470-mRNA-1:three_prime_utr;Parent=Msa0864470-mRNA-1
Gene Sequence

>Msa0864470

ATGAGCGGCGGCCGCGGTGGTGGTGGTGGCGGGTCTAGGGTTCCGATCCCCAACAATGTACGGAAAACCATCCACGACATCAGAGAGATCACCGGAAAACAACACACGGACGACGAAATCTTCTCCGTTCTTAAAGAATCAAACATGGATCCCAATGAAACTACTCAAAAGCTTCTCTATTTAGATACTTTTCATGAAGTAAGAAGGAGACGTGACCGCAGAAAGGAAGGATTGAGCAGCAGGGTTTCTGAGGAGTCTAGATCAAAACAACGTGGACAGGGGAGGGGAGCAAGAGGTTTTTCGGGGGGCTATTCCTCAAACTTTCCTGATGGTGGTGGTGGTGGGAGAAACCTTCCTATTCGAAGGGAAAATGGAGTCCATCACATTGCAGAGAGAACTCATGCTTCCTCTACTCAGCCAGATTTACAGAAAAACACTAATGCAGCACCCCAAGCCTCAAGAGGTTCAGCTGTTGCACCCCATAGTGCTGCAAATCAATCCAATGGGAAGTCTGGTCATGGTTCTTCTGGCCAATCTCTCATAGGTAGTGTTGTTAGTGTCCCACAAAGCAGTTCAGCTTCTAATGACACTGTCAATCAAGAAACTGTGCAACCTCAAGCTGTTGTTGTTGCAGCAACCACTATTCCTACTCAAACCTTTGCCTCAATTACAAGAACTGACCAAGGAAAATCTCTCTCAAGTTCTGATCAACATCAAATTTCTGTACCGGGTGTTTGTTCCTCTTCAGATCCTGTGCTGGCACCATCTATCTCCCAGATTCCTGGTGTTGGCGGTGCTGTCAGTAGGGAAGTAGGGAGTGACCGGATATCTGCTGGGCCAAATCATGTTAAAGGAAACAAACTTGAAGAAGCTGGTGATTTATCAGCATCCGAGAATGATAAGTCCGGGTCCATGAATTCAACAAGCAACCCGAATGCAATACCAAAGTCAAATGAAGTTGAAAGTAACCGGTTATCTGAGCCCTTGCAACTCTCATCGTCTTCATCATTGACTTCCAGTTGCGTTAGCCAACCACCTCAAGGTAAAGTTTTTATTCCATACCTGTTAAATCTTATAAAGAAATTGTTTGACGTAACTGTTTCCATCTCCTCAATTTCTGGTTTAGATGTTTCTAAAACAGCCAATGTCACAGAGGTCTCAACTTCAGAAGCTCCTGTGCAGTCAACTGAGTTGAGGCAACATGTTACTTTTCCAAACCATTTCCAAGTGCCTGAGGCTTTAAAAGGTGGTCTGACATTTGGAAGCTTCGATACTTTTGATCCAAGTGAAAAATCTAGCAGTGTAACTGGTTGTGACAATAGCACTTCTCCCACTCCTGAATCTTCTTCAGTGAATGCTGAAACTGTTAATTCAAGCAACCAAAGCGTGCCATTGCCCGAACACGGAGATCATCTTGATCATGCACATTCTTCATCTTATTTAATTAAAGAGACACTAGCTTCTGAAGGCATATCTATAACTGGTAATGATTCAAAGATTGAGCAGCCAAAGCAGGAGGTATTGTTAACTCCCGAGGGCCATCCAATTCTGACTGTTCAAAGTGCTCAAAACTATGGTTTGAATTTCATGTCTACCATGTTAGGGACTCAGCAAGTGCAATTTGAGGGTAGTGAGCTTCAGGCGCAAGAAACACCACACTTCCCTTCCTTTGTTACTGCAAGTTCTCAGGCTGTGTCTCCCAGCCCAACTCCACCTCTACAGAGCTCTATACCTGTTTCTCCACAGCCCGTTTCTTATTTTAGGCCACCATACCCAGCTAACTTCTTCCCATATGGCCCCTATTACCCCCCAATTTACCTGTCTCCAATGCATCAATTTTTAAGCCACAATGGTTTCCCTCAACAGCCATCAGCTGGCAACATGTATCTACCAGCCGCGGCTGCAGCTGCTGGGATCAAGTTCCCTCTCCCGCAATTCAAGGCTGGAGCGAACACAGGAAATATGGCTCATATTGGAATTCCTTCGGGATCATATATCACTCCACCTGTTGGATATGCTCCTAGTCCGACCGTGAATACTGGAAGCTCTGCCGGAAATGAAGATACTGCAGTGTCTCAGTTGAAAGAAAACCAGATCTATACAACTGGACAACTGAGTGAAGGCTCTGCTGTGTGGATACATGCACCAGGCCAAGATATGTCCGGTTTGCAACTTAATTCTCTATATAACCTTTCCCCTCAAGGGCAACATCTCACCTTCCCCCAGACACAGGCTGCTCACGGAGCATTTCCCGGTATCTATCAACCAGGGCAGACAGTAACTTCACCTTCTACCCTTTTGCAGCAGTCTCAAGCTGTCGCTGGGCCTGTTGAAACTGTAGGCCCGCCTCCAGGATCTTATCAGCAGCTACCGCCTTCTCAGATCAATTGGAATTCTAATTTTTAG
Protein sequence

>Msa0864470

MSGGRGGGGGGSRVPIPNNVRKTIHDIREITGKQHTDDEIFSVLKESNMDPNETTQKLLYLDTFHEVRRRRDRRKEGLSSRVSEESRSKQRGQGRGARGFSGGYSSNFPDGGGGGRNLPIRRENGVHHIAERTHASSTQPDLQKNTNAAPQASRGSAVAPHSAANQSNGKSGHGSSGQSLIGSVVSVPQSSSASNDTVNQETVQPQAVVVAATTIPTQTFASITRTDQGKSLSSSDQHQISVPGVCSSSDPVLAPSISQIPGVGGAVSREVGSDRISAGPNHVKGNKLEEAGDLSASENDKSGSMNSTSNPNAIPKSNEVESNRLSEPLQLSSSSSLTSSCVSQPPQGKVFIPYLLNLIKKLFDVTVSISSISGLDVSKTANVTEVSTSEAPVQSTELRQHVTFPNHFQVPEALKGGLTFGSFDTFDPSEKSSSVTGCDNSTSPTPESSSVNAETVNSSNQSVPLPEHGDHLDHAHSSSYLIKETLASEGISITGNDSKIEQPKQEVLLTPEGHPILTVQSAQNYGLNFMSTMLGTQQVQFEGSELQAQETPHFPSFVTASSQAVSPSPTPPLQSSIPVSPQPVSYFRPPYPANFFPYGPYYPPIYLSPMHQFLSHNGFPQQPSAGNMYLPAAAAAAGIKFPLPQFKAGANTGNMAHIGIPSGSYITPPVGYAPSPTVNTGSSAGNEDTAVSQLKENQIYTTGQLSEGSAVWIHAPGQDMSGLQLNSLYNLSPQGQHLTFPQTQAAHGAFPGIYQPGQTVTSPSTLLQQSQAVAGPVETVGPPPGSYQQLPPSQINWNSNF*