Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525330 | XP_003603555.1 | 98.981 | 687 | 7 | 0 | 1 | 687 | 1 | 687 | 0.0 | 1401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525330 | sp|Q9SB75|CSLC5_ARATH | 79.509 | 693 | 135 | 5 | 1 | 687 | 1 | 692 | 0.0 | 1103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525330 | G7J2T7 | 98.981 | 687 | 7 | 0 | 1 | 687 | 1 | 687 | 0.0 | 1401 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136650 | Msa0525330 | 0.811258 | 7.660821e-51 | -8.615850e-47 |
| Msa0383320 | Msa0525330 | 0.928892 | 1.515635e-92 | -8.615850e-47 |
| Msa0430260 | Msa0525330 | 0.815789 | 7.720440e-52 | -8.615850e-47 |
| Msa0433470 | Msa0525330 | 0.899727 | 1.487941e-77 | -8.615850e-47 |
| Msa0477190 | Msa0525330 | 0.815115 | 1.090482e-51 | -8.615850e-47 |
| Msa0500380 | Msa0525330 | 0.802814 | 4.691715e-49 | -8.615850e-47 |
| Msa0525330 | Msa0689520 | 0.811088 | 8.339593e-51 | -8.615850e-47 |
| Msa0525330 | Msa0981320 | 0.803693 | 3.085600e-49 | -8.615850e-47 |
| Msa0525330 | Msa1160910 | 0.825621 | 4.243006e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525330 | MtrunA17_Chr3g0139081 | 98.981 | 687 | 7 | 0 | 1 | 687 | 1 | 687 | 0.0 | 1401 |
| Msa0525330 | MtrunA17_Chr4g0000581 | 74.111 | 703 | 162 | 7 | 1 | 687 | 1 | 699 | 0.0 | 1040 |
| Msa0525330 | MtrunA17_Chr3g0135191 | 65.211 | 710 | 212 | 10 | 1 | 687 | 1 | 698 | 0.0 | 898 |
| Msa0525330 | MtrunA17_Chr6g0451381 | 66.716 | 673 | 207 | 6 | 19 | 687 | 7 | 666 | 0.0 | 894 |
| Msa0525330 | MtrunA17_Chr8g0339101 | 60.649 | 709 | 246 | 8 | 2 | 687 | 4 | 702 | 0.0 | 838 |
| Msa0525330 | MtrunA17_Chr1g0179381 | 42.293 | 532 | 270 | 5 | 155 | 683 | 19 | 516 | 1.21e-143 | 429 |
| Msa0525330 | MtrunA17_Chr1g0179441 | 41.917 | 532 | 273 | 5 | 155 | 683 | 19 | 517 | 2.89e-143 | 428 |
| Msa0525330 | MtrunA17_Chr1g0179421 | 41.353 | 532 | 276 | 4 | 155 | 683 | 19 | 517 | 3.10e-142 | 426 |
| Msa0525330 | MtrunA17_Chr7g0265711 | 41.729 | 532 | 274 | 5 | 155 | 683 | 28 | 526 | 5.75e-141 | 422 |
| Msa0525330 | MtrunA17_Chr1g0198111 | 44.979 | 478 | 230 | 4 | 207 | 683 | 79 | 524 | 2.39e-140 | 421 |
| Msa0525330 | MtrunA17_Chr4g0027221 | 40.968 | 537 | 284 | 7 | 155 | 683 | 28 | 539 | 1.23e-135 | 409 |
| Msa0525330 | MtrunA17_Chr7g0264621 | 39.147 | 539 | 281 | 5 | 154 | 683 | 24 | 524 | 4.25e-135 | 407 |
| Msa0525330 | MtrunA17_Chr1g0179391 | 49.211 | 317 | 160 | 1 | 267 | 582 | 1 | 317 | 2.77e-108 | 331 |
| Msa0525330 | MtrunA17_Chr4g0064791 | 72.535 | 142 | 33 | 1 | 189 | 324 | 59 | 200 | 6.11e-63 | 208 |
| Msa0525330 | MtrunA17_Chr4g0037831 | 80.769 | 104 | 20 | 0 | 42 | 145 | 7 | 110 | 7.96e-51 | 172 |
| Msa0525330 | MtrunA17_Chr4g0060331 | 77.778 | 90 | 20 | 0 | 42 | 131 | 7 | 96 | 5.02e-39 | 139 |
| Msa0525330 | MtrunA17_Chr1g0179401 | 41.379 | 116 | 65 | 2 | 155 | 268 | 19 | 133 | 6.92e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525330 | AT4G31590.1 | 79.509 | 693 | 135 | 5 | 1 | 687 | 1 | 692 | 0.0 | 1103 |
| Msa0525330 | AT2G24630.1 | 76.590 | 692 | 155 | 5 | 1 | 687 | 1 | 690 | 0.0 | 1082 |
| Msa0525330 | AT2G24630.2 | 76.590 | 692 | 155 | 5 | 1 | 687 | 1 | 690 | 0.0 | 1082 |
| Msa0525330 | AT3G28180.1 | 66.473 | 689 | 188 | 8 | 21 | 687 | 6 | 673 | 0.0 | 913 |
| Msa0525330 | AT4G07960.1 | 64.175 | 709 | 220 | 9 | 1 | 686 | 1 | 698 | 0.0 | 879 |
| Msa0525330 | AT4G07960.2 | 64.175 | 709 | 220 | 9 | 1 | 686 | 1 | 698 | 0.0 | 879 |
| Msa0525330 | AT3G07330.1 | 61.696 | 684 | 251 | 5 | 6 | 687 | 8 | 682 | 0.0 | 853 |
| Msa0525330 | AT3G07330.2 | 61.696 | 684 | 251 | 5 | 6 | 687 | 8 | 682 | 0.0 | 853 |
| Msa0525330 | AT5G03760.1 | 42.642 | 530 | 264 | 9 | 159 | 683 | 33 | 527 | 1.42e-140 | 422 |
| Msa0525330 | AT5G22740.1 | 41.165 | 532 | 279 | 5 | 155 | 683 | 29 | 529 | 1.73e-139 | 419 |
| Msa0525330 | AT1G23480.1 | 41.078 | 538 | 279 | 6 | 150 | 683 | 47 | 550 | 6.35e-138 | 416 |
| Msa0525330 | AT1G23480.2 | 41.078 | 538 | 279 | 6 | 150 | 683 | 47 | 550 | 6.35e-138 | 416 |
| Msa0525330 | AT1G23480.3 | 43.841 | 479 | 234 | 4 | 207 | 683 | 33 | 478 | 8.92e-136 | 408 |
| Msa0525330 | AT2G35650.1 | 46.469 | 439 | 231 | 3 | 155 | 590 | 51 | 488 | 1.38e-134 | 407 |
| Msa0525330 | AT4G13410.1 | 43.290 | 462 | 248 | 3 | 155 | 608 | 43 | 498 | 1.71e-133 | 404 |
| Msa0525330 | AT2G35650.4 | 50.263 | 380 | 188 | 1 | 212 | 590 | 37 | 416 | 5.55e-133 | 400 |
| Msa0525330 | AT2G35650.2 | 50.263 | 380 | 188 | 1 | 212 | 590 | 37 | 416 | 5.55e-133 | 400 |
| Msa0525330 | AT5G16190.3 | 40.301 | 531 | 282 | 4 | 155 | 683 | 6 | 503 | 1.85e-132 | 400 |
| Msa0525330 | AT1G24070.1 | 38.752 | 529 | 287 | 5 | 158 | 683 | 57 | 551 | 6.30e-132 | 400 |
| Msa0525330 | AT5G16190.2 | 45.147 | 443 | 241 | 2 | 155 | 595 | 6 | 448 | 1.24e-129 | 391 |
| Msa0525330 | AT5G16190.1 | 42.283 | 473 | 239 | 3 | 212 | 683 | 3 | 442 | 1.72e-129 | 390 |
| Msa0525330 | AT3G56000.1 | 40.262 | 534 | 274 | 7 | 159 | 683 | 26 | 523 | 2.71e-129 | 393 |
| Msa0525330 | AT5G16190.4 | 37.943 | 564 | 282 | 5 | 155 | 683 | 6 | 536 | 1.25e-125 | 384 |
| Msa0525330 | AT4G16590.1 | 37.037 | 540 | 268 | 8 | 147 | 683 | 49 | 519 | 4.14e-113 | 350 |
| Msa0525330 | AT1G23480.4 | 42.105 | 418 | 207 | 4 | 268 | 683 | 21 | 405 | 1.74e-110 | 340 |
| Msa0525330 | AT2G35650.3 | 48.137 | 322 | 166 | 1 | 270 | 590 | 9 | 330 | 1.71e-105 | 327 |
| Msa0525330 | AT4G13410.3 | 39.173 | 411 | 212 | 2 | 274 | 683 | 2 | 375 | 6.30e-105 | 324 |
| Msa0525330 | AT1G24070.2 | 48.276 | 319 | 162 | 2 | 158 | 474 | 57 | 374 | 8.16e-102 | 317 |
| Msa0525330 | AT4G13410.2 | 47.706 | 327 | 158 | 2 | 155 | 474 | 43 | 363 | 1.72e-100 | 314 |
Find 185 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCAGTGTCACTAATTT+TGG | 0.054016 | 3_4:+78870955 | None:intergenic |
| TACTTTCAAGGTTGGCATTT+TGG | 0.120896 | 3_4:+78871693 | Msa0525330:CDS |
| AATCTTCACAACTGAGAAAT+TGG | 0.125987 | 3_4:-78871403 | None:intergenic |
| GTTAATTTCTTTGGCTGTTT+TGG | 0.142194 | 3_4:+78871653 | Msa0525330:CDS |
| ACCGTATGCTTCTTTGTTTC+GGG | 0.170225 | 3_4:+78871871 | Msa0525330:CDS |
| CAGAGGCAGAACTTCCTTTA+TGG | 0.175113 | 3_4:+78873780 | Msa0525330:CDS |
| TTCTCAGTTGTGAAGATTAA+TGG | 0.191808 | 3_4:+78871408 | Msa0525330:CDS |
| CAGCAACACCGCTGGCATTC+AGG | 0.192229 | 3_4:+78873277 | Msa0525330:CDS |
| CTTGGTTAGTAACTGTTCTT+TGG | 0.224084 | 3_4:+78871535 | Msa0525330:CDS |
| GGGGTGTTTCTTAATTTCTT+TGG | 0.229657 | 3_4:+78872902 | Msa0525330:CDS |
| TTAGCTTTCTTAACAGGTTC+TGG | 0.235289 | 3_4:-78874124 | None:intergenic |
| AAATAAGGTGAAGGAGTAAA+AGG | 0.246621 | 3_4:-78873726 | None:intergenic |
| TTCTTTGTTTCGGGTGGTTT+TGG | 0.256673 | 3_4:+78871880 | Msa0525330:CDS |
| GGAAGCATAAATTTATGTTT+TGG | 0.261801 | 3_4:-78872853 | None:intergenic |
| AAATTTAATGCAATGGTATC+TGG | 0.270707 | 3_4:+78873914 | Msa0525330:CDS |
| CCTGCTGTTCTACTTCAAAA+TGG | 0.273610 | 3_4:-78872874 | None:intergenic |
| AGATTCGTAGTTGATGTTAT+TGG | 0.273969 | 3_4:-78871123 | None:intergenic |
| CAGGGAGTGGCTGTTGAAAA+AGG | 0.279089 | 3_4:+78871597 | Msa0525330:CDS |
| ATGCATTTATCCAATGGTTT+TGG | 0.280954 | 3_4:+78871974 | Msa0525330:CDS |
| TTTGTTCTTTGGTTGTATTT+GGG | 0.283510 | 3_4:+78874730 | Msa0525330:three_prime_UTR |
| CTTAATTTCTTTGGTTTCAA+TGG | 0.284700 | 3_4:+78872911 | Msa0525330:CDS |
| GACCGTATGCTTCTTTGTTT+CGG | 0.285549 | 3_4:+78871870 | Msa0525330:CDS |
| TGATCACCTTGACATCATTT+AGG | 0.295314 | 3_4:-78873054 | None:intergenic |
| AGGAGGTAAGGAACAATAAA+AGG | 0.298765 | 3_4:-78873866 | None:intergenic |
| ATCTTGTTAGCTTTCTTAAC+AGG | 0.305652 | 3_4:-78874130 | None:intergenic |
| GAGGTTGTTGCTTACTTTCA+AGG | 0.311089 | 3_4:+78871681 | Msa0525330:CDS |
| ACAGTTTGCTTAAGAAAATC+AGG | 0.311338 | 3_4:-78872653 | None:intergenic |
| ACCTCAGATTTCAAAATTGC+TGG | 0.313915 | 3_4:-78873328 | None:intergenic |
| CTGAGTCATATGAAGCTTAC+AGG | 0.314147 | 3_4:+78873251 | Msa0525330:CDS |
| AGATTATGTTGATTCCCTTT+TGG | 0.319352 | 3_4:-78872511 | None:intergenic |
| CTTGTAGGCCTTGATTTGAT+TGG | 0.321359 | 3_4:+78874268 | Msa0525330:CDS |
| AACACCAGTGGTGGTGAAAA+TGG | 0.333264 | 3_4:+78871374 | Msa0525330:CDS |
| AGGAAGGATTATGCAAAATA+AGG | 0.334621 | 3_4:-78873741 | None:intergenic |
| ATGAACTCTGCTCAGACATT+TGG | 0.344263 | 3_4:-78874789 | None:intergenic |
| GTGCCGTTGGTTGTGTTACT+TGG | 0.350606 | 3_4:+78871517 | Msa0525330:CDS |
| ATTTACAATGGCTCCAAGAT+TGG | 0.353231 | 3_4:+78871314 | Msa0525330:exon |
| CATGAGTTAAGTAAATAAAA+TGG | 0.353932 | 3_4:+78874941 | Msa0525330:three_prime_UTR |
| TCTGGAACAAACATGGTTAA+AGG | 0.354104 | 3_4:-78873761 | None:intergenic |
| CTACATTGCTCCACCAATTC+AGG | 0.355815 | 3_4:+78871803 | Msa0525330:CDS |
| AAACCATATGGAACCACCTT+TGG | 0.363318 | 3_4:-78871752 | None:intergenic |
| GCAAACTGTGCCACATTTCA+AGG | 0.370258 | 3_4:+78872667 | Msa0525330:CDS |
| TTTGTTGCTAATTGTATTGC+TGG | 0.372081 | 3_4:-78874473 | None:intergenic |
| TCCATATGGTTTATGTTGCT+TGG | 0.374551 | 3_4:+78871763 | Msa0525330:CDS |
| GAGCATACAGTGGTTAATTA+AGG | 0.378443 | 3_4:+78872469 | Msa0525330:CDS |
| TTGGTTAGTAACTGTTCTTT+GGG | 0.379476 | 3_4:+78871536 | Msa0525330:CDS |
| ATCAAAGCCCTAGAAGAATC+TGG | 0.380417 | 3_4:+78872953 | Msa0525330:CDS |
| ATCTTCACAACTGAGAAATT+GGG | 0.381353 | 3_4:-78871402 | None:intergenic |
| TGCTTAAGAAAATCAGGGTT+TGG | 0.389882 | 3_4:-78872647 | None:intergenic |
| AGCAACACCGCTGGCATTCA+GGG | 0.390128 | 3_4:+78873278 | Msa0525330:CDS |
| ATAACAGAGAAACCTTGTTT+TGG | 0.396626 | 3_4:-78874567 | None:intergenic |
| GGTATCTGGACTCTTCCAAT+TGG | 0.403642 | 3_4:+78873928 | Msa0525330:CDS |
| GGGATGACATTCTTCCTTGT+AGG | 0.403705 | 3_4:+78874253 | Msa0525330:CDS |
| AATTGGGAAGCTCTTATGAA+TGG | 0.404164 | 3_4:+78873945 | Msa0525330:CDS |
| AATGGATCCCCATTGATCAT+TGG | 0.406112 | 3_4:-78871924 | None:intergenic |
| TCTATATAGGCACTGGTCAC+TGG | 0.414764 | 3_4:+78874637 | Msa0525330:three_prime_UTR |
| GCTTGGACCAAACCTAGTTC+AGG | 0.414765 | 3_4:-78872785 | None:intergenic |
| GAGAACAACTGTAGAAGATA+TGG | 0.416414 | 3_4:+78872988 | Msa0525330:CDS |
| TTTCCAAAGGTGGTTCCATA+TGG | 0.418411 | 3_4:+78871749 | Msa0525330:CDS |
| TTTGGTTTCAATGGAACTGC+TGG | 0.420392 | 3_4:+78872920 | Msa0525330:CDS |
| TGGAACGTGAAACACACTAT+TGG | 0.421234 | 3_4:-78874350 | None:intergenic |
| CAACACGGGTTCAGCATCCT+TGG | 0.430491 | 3_4:-78874370 | None:intergenic |
| TCATCACAAGTATTCTATAT+AGG | 0.431477 | 3_4:+78874624 | Msa0525330:three_prime_UTR |
| GCAAGAATGCTAAACAAGTT+AGG | 0.432413 | 3_4:+78871469 | Msa0525330:CDS |
| AGTATGAGGAATGTGCAAAT+TGG | 0.435051 | 3_4:-78871721 | None:intergenic |
| AGGTTAAGCCAATGATCAAT+GGG | 0.437598 | 3_4:+78871916 | Msa0525330:CDS |
| GAAGTAGAACAGCAGGTCAA+TGG | 0.438411 | 3_4:+78872881 | Msa0525330:CDS |
| GAAAAGGCTGGTTCGTAGAC+AGG | 0.438680 | 3_4:+78871578 | Msa0525330:CDS |
| AACTTCGAAAGTGCCTGAAT+TGG | 0.444764 | 3_4:-78871816 | None:intergenic |
| AATTTCTGCAGTGTGTCAAA+TGG | 0.446405 | 3_4:+78872394 | Msa0525330:CDS |
| TTCGAAAGTGCCTGAATTGG+TGG | 0.450121 | 3_4:-78871813 | None:intergenic |
| TCAATGGAACTGCTGGTGTT+TGG | 0.451289 | 3_4:+78872927 | Msa0525330:CDS |
| ACCAAGCAACATAAACCATA+TGG | 0.452313 | 3_4:-78871764 | None:intergenic |
| AAGTAGAACAGCAGGTCAAT+GGG | 0.453067 | 3_4:+78872882 | Msa0525330:CDS |
| GGATAATCCTGAACTAGGTT+TGG | 0.455019 | 3_4:+78872778 | Msa0525330:intron |
| ATTGGAAAAGGCACATTATG+AGG | 0.455854 | 3_4:-78871059 | None:intergenic |
| ACATAGCAGATCAACCATAA+AGG | 0.458153 | 3_4:-78873794 | None:intergenic |
| GAATAAGACACAAACTTTCA+AGG | 0.461463 | 3_4:-78871028 | None:intergenic |
| TGTTGAGTTACAGCAATTGA+AGG | 0.464132 | 3_4:+78874084 | Msa0525330:CDS |
| TGCTTGGTGCTATTAAGAAA+AGG | 0.466972 | 3_4:+78871562 | Msa0525330:CDS |
| GGAATTTGAACCAAAACCAT+TGG | 0.468674 | 3_4:-78871984 | None:intergenic |
| TCAACATCATCAACCTTGAA+TGG | 0.468739 | 3_4:-78871942 | None:intergenic |
| AAGACACCTAACATTGGAAA+AGG | 0.469988 | 3_4:-78871071 | None:intergenic |
| GGTCTCTAAGTGGAACCAAA+AGG | 0.473118 | 3_4:+78872496 | Msa0525330:CDS |
| GACATTTGGAATGGTGAGAT+AGG | 0.474946 | 3_4:-78874775 | None:intergenic |
| ATCTGTATGCATTTATCCAA+TGG | 0.475291 | 3_4:+78871968 | Msa0525330:CDS |
| AAGGTTAAGCCAATGATCAA+TGG | 0.477569 | 3_4:+78871915 | Msa0525330:CDS |
| CGGCATCGCTTGGTCAGGAC+TGG | 0.477703 | 3_4:+78872536 | Msa0525330:CDS |
| ATTCATAAGAGCTTCCCAAT+TGG | 0.477893 | 3_4:-78873943 | None:intergenic |
| TCTATCGGCATCGCTTGGTC+AGG | 0.480004 | 3_4:+78872531 | Msa0525330:CDS |
| TTACAGGATAATCCTGAACT+AGG | 0.481264 | 3_4:+78872773 | Msa0525330:intron |
| TCCAATGTGCAATGAGAAAG+AGG | 0.482610 | 3_4:+78872004 | Msa0525330:CDS |
| GTCAGGACTGGATATAAAGC+TGG | 0.486529 | 3_4:+78872548 | Msa0525330:CDS |
| ACTGTTCTTTGGGATTTGCT+TGG | 0.488047 | 3_4:+78871546 | Msa0525330:CDS |
| CGTGTCAGCGCACAATTGAA+TGG | 0.488875 | 3_4:-78874412 | None:intergenic |
| ATTAAGTTTGCTTTCTTCCA+CGG | 0.493411 | 3_4:-78873668 | None:intergenic |
| GAAGCATACGGTCCACGGAT+TGG | 0.496178 | 3_4:-78871860 | None:intergenic |
| AATAAGGTGAAGGAGTAAAA+GGG | 0.501255 | 3_4:-78873725 | None:intergenic |
| GATCAATGGGGATCCATTCA+AGG | 0.501987 | 3_4:+78871929 | Msa0525330:CDS |
| TGACACAAGCTGTGAGAAGA+AGG | 0.502725 | 3_4:-78874180 | None:intergenic |
| TGGATTGTCACAAAGAAAGC+TGG | 0.503165 | 3_4:+78873965 | Msa0525330:CDS |
| ATATTTACAGTGATCAATCA+TGG | 0.503419 | 3_4:-78870998 | None:intergenic |
| TCCGAGCTCACCTCAATGGT+TGG | 0.504060 | 3_4:+78873020 | Msa0525330:CDS |
| CAAGGAAGAATGTCATCCCT+TGG | 0.504529 | 3_4:-78874249 | None:intergenic |
| ATGGTGCAGATGCTGCATTT+AGG | 0.506624 | 3_4:+78871427 | Msa0525330:CDS |
| GTAAATAAAATGGTGTCGGC+AGG | 0.506989 | 3_4:+78874951 | Msa0525330:three_prime_UTR |
| TCAAAGCCCTAGAAGAATCT+GGG | 0.507079 | 3_4:+78872954 | Msa0525330:CDS |
| TCCAACCATTGAGGTGAGCT+CGG | 0.507425 | 3_4:-78873021 | None:intergenic |
| AATGGGTCAAACAGAAATGA+AGG | 0.507855 | 3_4:-78874858 | None:intergenic |
| TTGTTGCTTACTTTCAAGGT+TGG | 0.508405 | 3_4:+78871685 | Msa0525330:CDS |
| CTCATACTTCTGATTTCCAA+AGG | 0.508694 | 3_4:+78871736 | Msa0525330:CDS |
| GTATCTGGACTCTTCCAATT+GGG | 0.517060 | 3_4:+78873929 | Msa0525330:CDS |
| TTCAAGGTTGATGATGTTGA+AGG | 0.517442 | 3_4:+78871945 | Msa0525330:CDS |
| CTTAAAGCTCATCGTGCCGT+TGG | 0.518642 | 3_4:+78871504 | Msa0525330:CDS |
| CATAAAGGAAGTTCTGCCTC+TGG | 0.523961 | 3_4:-78873779 | None:intergenic |
| ATAGTGTGTTTCACGTTCCA+AGG | 0.526080 | 3_4:+78874353 | Msa0525330:three_prime_UTR |
| GTCTCTAAGTGGAACCAAAA+GGG | 0.527274 | 3_4:+78872497 | Msa0525330:CDS |
| CTTTGGAAATCAGAAGTATG+AGG | 0.527295 | 3_4:-78871735 | None:intergenic |
| GCTGTCCGAGCTCACCTCAA+TGG | 0.528881 | 3_4:+78873016 | Msa0525330:CDS |
| CAATCAAATCAAGGCCTACA+AGG | 0.531066 | 3_4:-78874267 | None:intergenic |
| ACCTCTTTCTCATTGCACAT+TGG | 0.537709 | 3_4:-78872005 | None:intergenic |
| CAAGTATTCTATATAGGCAC+TGG | 0.539456 | 3_4:+78874630 | Msa0525330:three_prime_UTR |
| CATAATCTATCGGCATCGCT+TGG | 0.540008 | 3_4:+78872526 | Msa0525330:CDS |
| ACAAAGAAGCATACGGTCCA+CGG | 0.540829 | 3_4:-78871865 | None:intergenic |
| AAAAGGCTGGTTCGTAGACA+GGG | 0.541112 | 3_4:+78871579 | Msa0525330:CDS |
| TCTGCTCTCCAATCAAATCA+AGG | 0.541124 | 3_4:-78874276 | None:intergenic |
| TGGTGCTATTAAGAAAAGGC+TGG | 0.543425 | 3_4:+78871566 | Msa0525330:CDS |
| CTGTTCTGAGAGTTTCAGAA+AGG | 0.544450 | 3_4:-78874516 | None:intergenic |
| AGATAAATTTCCAACCATTG+AGG | 0.544758 | 3_4:-78873030 | None:intergenic |
| TTTAACCATGTTTGTTCCAG+AGG | 0.547320 | 3_4:+78873763 | Msa0525330:CDS |
| CTGCAGTGTGTCAAATGGAT+TGG | 0.548428 | 3_4:+78872399 | Msa0525330:CDS |
| TTAAGGATTGACATGCATAC+AGG | 0.551931 | 3_4:-78873818 | None:intergenic |
| TAGGTGCAGGAAGAATGTTA+AGG | 0.552420 | 3_4:-78873835 | None:intergenic |
| TTTGTTTCTTATCCAATCCG+TGG | 0.553534 | 3_4:+78871848 | Msa0525330:CDS |
| TATCTTCCTAAATGATGTCA+AGG | 0.553615 | 3_4:+78873048 | Msa0525330:CDS |
| TCACAAAAGACCATCTAGCT+TGG | 0.556166 | 3_4:-78872802 | None:intergenic |
| GAATGCTAAACAAGTTAGGT+GGG | 0.557662 | 3_4:+78871473 | Msa0525330:CDS |
| GCTGGTTCGTAGACAGGGAG+TGG | 0.560932 | 3_4:+78871584 | Msa0525330:CDS |
| TGAATCAGTAAACGATCCCT+TGG | 0.561328 | 3_4:-78872422 | None:intergenic |
| AGGGAATCAACATAATCTAT+CGG | 0.563806 | 3_4:+78872516 | Msa0525330:CDS |
| TGTGTCAAATGGATTGGCCA+AGG | 0.564789 | 3_4:+78872405 | Msa0525330:CDS |
| AGAATGCTAAACAAGTTAGG+TGG | 0.573310 | 3_4:+78871472 | Msa0525330:CDS |
| TGCAGATGCTGCATTTAGGC+CGG | 0.573889 | 3_4:+78871431 | Msa0525330:CDS |
| TCTTCACAACTGAGAAATTG+GGG | 0.578230 | 3_4:-78871401 | None:intergenic |
| ACAGGAAGCAGCAACACCGC+TGG | 0.578674 | 3_4:+78873269 | Msa0525330:CDS |
| GTATGCTTCTTTGTTTCGGG+TGG | 0.578929 | 3_4:+78871874 | Msa0525330:CDS |
| CTGTAAGCTTCATATGACTC+AGG | 0.579123 | 3_4:-78873250 | None:intergenic |
| TAGGTTTGGTCCAAGCTAGA+TGG | 0.582078 | 3_4:+78872792 | Msa0525330:CDS |
| ACAGTGGTTAATTAAGGCTG+AGG | 0.582788 | 3_4:+78872475 | Msa0525330:CDS |
| GAACAAACATGGTTAAAGGA+AGG | 0.583578 | 3_4:-78873757 | None:intergenic |
| TTAAGTAAATAAAATGGTGT+CGG | 0.583799 | 3_4:+78874947 | Msa0525330:three_prime_UTR |
| CAGTTTGCTTAAGAAAATCA+GGG | 0.584235 | 3_4:-78872652 | None:intergenic |
| TGGATGAAGGATTCACAGAA+AGG | 0.587309 | 3_4:+78871351 | Msa0525330:CDS |
| CTTGTTTAGCATTCTTGCCG+CGG | 0.588225 | 3_4:-78871464 | None:intergenic |
| CTCTGCTCAGACATTTGGAA+TGG | 0.590647 | 3_4:-78874784 | None:intergenic |
| ATACTTCTGATTTCCAAAGG+TGG | 0.593673 | 3_4:+78871739 | Msa0525330:CDS |
| TGTGACTAAATTTAATGCAA+TGG | 0.593823 | 3_4:+78873907 | Msa0525330:CDS |
| TTCTGCCTCTGGAACAAACA+TGG | 0.595292 | 3_4:-78873768 | None:intergenic |
| GATTATGCAAAATAAGGTGA+AGG | 0.598839 | 3_4:-78873735 | None:intergenic |
| AGGTGAAGGAGTAAAAGGGA+AGG | 0.604134 | 3_4:-78873721 | None:intergenic |
| CTTCACTTAACCTTGAAATG+TGG | 0.610582 | 3_4:-78872677 | None:intergenic |
| CAAAGCCCTAGAAGAATCTG+GGG | 0.611476 | 3_4:+78872955 | Msa0525330:CDS |
| CACAGAGGAGCTTCTGACAG+TGG | 0.622297 | 3_4:+78874058 | Msa0525330:CDS |
| TAACCAAGTAACACAACCAA+CGG | 0.623439 | 3_4:-78871520 | None:intergenic |
| GTGTCAAATGGATTGGCCAA+GGG | 0.623875 | 3_4:+78872406 | Msa0525330:CDS |
| TACATATAGTTGATTCAACA+CGG | 0.632486 | 3_4:-78874385 | None:intergenic |
| ACCCGAAACAAAGAAGCATA+CGG | 0.633312 | 3_4:-78871872 | None:intergenic |
| TTAAGGCTGAGGTCTCTAAG+TGG | 0.635565 | 3_4:+78872486 | Msa0525330:CDS |
| ACAGAAAGGAACACCAGTGG+TGG | 0.639233 | 3_4:+78871365 | Msa0525330:CDS |
| ATTAAATTTAGTCACAGACA+TGG | 0.642279 | 3_4:-78873900 | None:intergenic |
| TGTGAAACTGTGATTTACAA+TGG | 0.643682 | 3_4:+78871302 | Msa0525330:exon |
| GACAACAAAGAGTAAAGACA+TGG | 0.646506 | 3_4:-78871173 | None:intergenic |
| ACTGCAACTTATAGTGTGTG+TGG | 0.653445 | 3_4:-78874450 | None:intergenic |
| AGAAGTCTGTTATCTGCACA+AGG | 0.657709 | 3_4:+78874202 | Msa0525330:CDS |
| ACATATAGTTGATTCAACAC+GGG | 0.660206 | 3_4:-78874384 | None:intergenic |
| GCATAGGCCCTGAATGCCAG+CGG | 0.668252 | 3_4:-78873285 | None:intergenic |
| TGATTAATCAGCAGAAGATG+TGG | 0.669212 | 3_4:-78874326 | None:intergenic |
| TTGTCACAAAGAAAGCTGGA+AGG | 0.675157 | 3_4:+78873969 | Msa0525330:CDS |
| ACCAGTGGTGGTGAAAATGG+AGG | 0.695679 | 3_4:+78871377 | Msa0525330:CDS |
| AGTAGAACAGCAGGTCAATG+GGG | 0.717208 | 3_4:+78872883 | Msa0525330:CDS |
| TTCACAGAAAGGAACACCAG+TGG | 0.722164 | 3_4:+78871362 | Msa0525330:CDS |
| GAACAACAAAAGATTCACAG+AGG | 0.731952 | 3_4:+78874043 | Msa0525330:CDS |
| AAAGCCCTAGAAGAATCTGG+GGG | 0.740097 | 3_4:+78872956 | Msa0525330:CDS |
| CTGATGATGAGAGCATACAG+TGG | 0.744429 | 3_4:+78872459 | Msa0525330:CDS |
| TTTAACTGCAGGTGTCACCG+TGG | 0.746704 | 3_4:+78873651 | Msa0525330:intron |
| GGTTAAGCCAATGATCAATG+GGG | 0.761083 | 3_4:+78871917 | Msa0525330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTGTTAATTTCTT+TGG | + | chr3_4:78871644-78871663 | Msa0525330:CDS | 15.0% |
| !! | ACAATAAAAGGAAAAAATTT+AGG | - | chr3_4:78873857-78873876 | None:intergenic | 15.0% |
| !! | AAAACAAAGAAAAAACAAAT+GGG | - | chr3_4:78874878-78874897 | None:intergenic | 15.0% |
| !! | AAAAACAAAGAAAAAACAAA+TGG | - | chr3_4:78874879-78874898 | None:intergenic | 15.0% |
| !! | CTTAATTGTGTTTAAATTTC+AGG | + | chr3_4:78873213-78873232 | Msa0525330:intron | 20.0% |
| !!! | AATAAAATTTAAGACCCTTT+AGG | - | chr3_4:78873633-78873652 | None:intergenic | 20.0% |
| !!! | CTTAAATTTTATTTAACTGC+AGG | + | chr3_4:78873640-78873659 | Msa0525330:intron | 20.0% |
| !!! | TTATTTTAAGTACCAAAACA+AGG | + | chr3_4:78874555-78874574 | Msa0525330:three_prime_UTR | 20.0% |
| !!! | GTTTTCTTTATTTTGTTCTT+TGG | + | chr3_4:78874719-78874738 | Msa0525330:three_prime_UTR | 20.0% |
| !! | CATGAGTTAAGTAAATAAAA+TGG | + | chr3_4:78874941-78874960 | Msa0525330:three_prime_UTR | 20.0% |
| !! | TTAAGTAAATAAAATGGTGT+CGG | + | chr3_4:78874947-78874966 | Msa0525330:three_prime_UTR | 20.0% |
| ! | ATATTTACAGTGATCAATCA+TGG | - | chr3_4:78871001-78871020 | None:intergenic | 25.0% |
| ! | ACTATTACATTGAAACTTAC+TGG | - | chr3_4:78872093-78872112 | None:intergenic | 25.0% |
| ! | AGATTGCAGAAAATTCTTAA+GGG | - | chr3_4:78872222-78872241 | None:intergenic | 25.0% |
| ! | TCAATGACATTGACAAAATA+TGG | + | chr3_4:78872315-78872334 | Msa0525330:intron | 25.0% |
| !!! | GGAAGCATAAATTTATGTTT+TGG | - | chr3_4:78872856-78872875 | None:intergenic | 25.0% |
| !! | CTTAATTTCTTTGGTTTCAA+TGG | + | chr3_4:78872911-78872930 | Msa0525330:CDS | 25.0% |
| ! | TATTATGCACTATGAAAGAA+AGG | - | chr3_4:78873117-78873136 | None:intergenic | 25.0% |
| ! | AAATTTAAGAGAGTTCTTCA+GGG | - | chr3_4:78873193-78873212 | None:intergenic | 25.0% |
| !!! | TATAAAGTGTTGTCAAATAG+CGG | + | chr3_4:78873488-78873507 | Msa0525330:intron | 25.0% |
| ! | TACTGAGTATTTGCAATTAT+TGG | + | chr3_4:78873592-78873611 | Msa0525330:intron | 25.0% |
| ! | TTATATTATGTACTGCCTAA+AGG | + | chr3_4:78873615-78873634 | Msa0525330:intron | 25.0% |
| ! | TATATTATGTACTGCCTAAA+GGG | + | chr3_4:78873616-78873635 | Msa0525330:intron | 25.0% |
| ! | ATTAAATTTAGTCACAGACA+TGG | - | chr3_4:78873903-78873922 | None:intergenic | 25.0% |
| ! | TGTGACTAAATTTAATGCAA+TGG | + | chr3_4:78873907-78873926 | Msa0525330:CDS | 25.0% |
| ! | AAATTTAATGCAATGGTATC+TGG | + | chr3_4:78873914-78873933 | Msa0525330:CDS | 25.0% |
| !! | ATATAAAAAAGAGCTGACTT+TGG | + | chr3_4:78874153-78874172 | Msa0525330:CDS | 25.0% |
| !! | TACATATAGTTGATTCAACA+CGG | - | chr3_4:78874388-78874407 | None:intergenic | 25.0% |
| ! | GAATGAATGAAAAATCGATA+GGG | - | chr3_4:78874597-78874616 | None:intergenic | 25.0% |
| ! | TGAATGAATGAAAAATCGAT+AGG | - | chr3_4:78874598-78874617 | None:intergenic | 25.0% |
| ! | TCATCACAAGTATTCTATAT+AGG | + | chr3_4:78874624-78874643 | Msa0525330:three_prime_UTR | 25.0% |
| !! | TTTTGTTCTTTGGTTGTATT+TGG | + | chr3_4:78874729-78874748 | Msa0525330:three_prime_UTR | 25.0% |
| ! | TTTGTTCTTTGGTTGTATTT+GGG | + | chr3_4:78874730-78874749 | Msa0525330:three_prime_UTR | 25.0% |
| !!! | CTTTGTTTTTTGTTGTTACT+TGG | + | chr3_4:78874889-78874908 | Msa0525330:three_prime_UTR | 25.0% |
| GAATAAGACACAAACTTTCA+AGG | - | chr3_4:78871031-78871050 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGACACCTAACAT+TGG | - | chr3_4:78871080-78871099 | None:intergenic | 30.0% |
| ! | AGATTCGTAGTTGATGTTAT+TGG | - | chr3_4:78871126-78871145 | None:intergenic | 30.0% |
| TGTGAAACTGTGATTTACAA+TGG | + | chr3_4:78871302-78871321 | Msa0525330:exon | 30.0% | |
| CAACTTGAAAAATCCAATCT+TGG | - | chr3_4:78871330-78871349 | None:intergenic | 30.0% | |
| !!! | CAAGATTGGATTTTTCAAGT+TGG | + | chr3_4:78871328-78871347 | Msa0525330:CDS | 30.0% |
| ATCTTCACAACTGAGAAATT+GGG | - | chr3_4:78871405-78871424 | None:intergenic | 30.0% | |
| AATCTTCACAACTGAGAAAT+TGG | - | chr3_4:78871406-78871425 | None:intergenic | 30.0% | |
| TTCTCAGTTGTGAAGATTAA+TGG | + | chr3_4:78871408-78871427 | Msa0525330:CDS | 30.0% | |
| TTGGTTAGTAACTGTTCTTT+GGG | + | chr3_4:78871536-78871555 | Msa0525330:CDS | 30.0% | |
| ! | GTTAATTTCTTTGGCTGTTT+TGG | + | chr3_4:78871653-78871672 | Msa0525330:CDS | 30.0% |
| !! | GTTTTGGATCAAATTCAAGA+AGG | + | chr3_4:78871896-78871915 | Msa0525330:CDS | 30.0% |
| ATCTGTATGCATTTATCCAA+TGG | + | chr3_4:78871968-78871987 | Msa0525330:CDS | 30.0% | |
| ! | ATGCATTTATCCAATGGTTT+TGG | + | chr3_4:78871974-78871993 | Msa0525330:CDS | 30.0% |
| TAAAAACCTCATAGCAAAAC+TGG | - | chr3_4:78872052-78872071 | None:intergenic | 30.0% | |
| GAGATTGCAGAAAATTCTTA+AGG | - | chr3_4:78872223-78872242 | None:intergenic | 30.0% | |
| TAAAACAACACAGCATCAAA+TGG | - | chr3_4:78872271-78872290 | None:intergenic | 30.0% | |
| !!! | AGATTATGTTGATTCCCTTT+TGG | - | chr3_4:78872514-78872533 | None:intergenic | 30.0% |
| AGGGAATCAACATAATCTAT+CGG | + | chr3_4:78872516-78872535 | Msa0525330:CDS | 30.0% | |
| ! | CAGTTTGCTTAAGAAAATCA+GGG | - | chr3_4:78872655-78872674 | None:intergenic | 30.0% |
| ! | ACAGTTTGCTTAAGAAAATC+AGG | - | chr3_4:78872656-78872675 | None:intergenic | 30.0% |
| !! | TGCAAATGACTTGTTATTAC+AGG | + | chr3_4:78872757-78872776 | Msa0525330:intron | 30.0% |
| AGATAAATTTCCAACCATTG+AGG | - | chr3_4:78873033-78873052 | None:intergenic | 30.0% | |
| TATCTTCCTAAATGATGTCA+AGG | + | chr3_4:78873048-78873067 | Msa0525330:CDS | 30.0% | |
| GAAATTTAAGAGAGTTCTTC+AGG | - | chr3_4:78873194-78873213 | None:intergenic | 30.0% | |
| ! | ATTAAGTTTGCTTTCTTCCA+CGG | - | chr3_4:78873671-78873690 | None:intergenic | 30.0% |
| !!! | TTCTGCTATTTTTTCTGCTA+AGG | + | chr3_4:78873690-78873709 | Msa0525330:CDS | 30.0% |
| AATAAGGTGAAGGAGTAAAA+GGG | - | chr3_4:78873728-78873747 | None:intergenic | 30.0% | |
| AAATAAGGTGAAGGAGTAAA+AGG | - | chr3_4:78873729-78873748 | None:intergenic | 30.0% | |
| GATTATGCAAAATAAGGTGA+AGG | - | chr3_4:78873738-78873757 | None:intergenic | 30.0% | |
| AGGAAGGATTATGCAAAATA+AGG | - | chr3_4:78873744-78873763 | None:intergenic | 30.0% | |
| AAAGGAAAAAATTTAGGTGC+AGG | - | chr3_4:78873851-78873870 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTGTTCTATTGACT+CGG | - | chr3_4:78874035-78874054 | None:intergenic | 30.0% |
| !! | ATCTTGTTAGCTTTCTTAAC+AGG | - | chr3_4:78874133-78874152 | None:intergenic | 30.0% |
| !! | TTCTACTTTCTGTTTTTCCA+AGG | + | chr3_4:78874232-78874251 | Msa0525330:CDS | 30.0% |
| !! | TCTACTTTCTGTTTTTCCAA+GGG | + | chr3_4:78874233-78874252 | Msa0525330:CDS | 30.0% |
| ! | ACATATAGTTGATTCAACAC+GGG | - | chr3_4:78874387-78874406 | None:intergenic | 30.0% |
| TTTGTTGCTAATTGTATTGC+TGG | - | chr3_4:78874476-78874495 | None:intergenic | 30.0% | |
| !! | ATAACAGAGAAACCTTGTTT+TGG | - | chr3_4:78874570-78874589 | None:intergenic | 30.0% |
| ! | ATTGGAAAAGGCACATTATG+AGG | - | chr3_4:78871062-78871081 | None:intergenic | 35.0% |
| ! | AATGTGCCTTTTCCAATGTT+AGG | + | chr3_4:78871065-78871084 | Msa0525330:five_prime_UTR | 35.0% |
| AAGACACCTAACATTGGAAA+AGG | - | chr3_4:78871074-78871093 | None:intergenic | 35.0% | |
| GACAACAAAGAGTAAAGACA+TGG | - | chr3_4:78871176-78871195 | None:intergenic | 35.0% | |
| ATTTACAATGGCTCCAAGAT+TGG | + | chr3_4:78871314-78871333 | Msa0525330:exon | 35.0% | |
| !!! | GATTGGATTTTTCAAGTTGG+TGG | + | chr3_4:78871331-78871350 | Msa0525330:CDS | 35.0% |
| !!! | TTTTTCAAGTTGGTGGATGA+AGG | + | chr3_4:78871338-78871357 | Msa0525330:CDS | 35.0% |
| TCTTCACAACTGAGAAATTG+GGG | - | chr3_4:78871404-78871423 | None:intergenic | 35.0% | |
| GCAAGAATGCTAAACAAGTT+AGG | + | chr3_4:78871469-78871488 | Msa0525330:CDS | 35.0% | |
| AGAATGCTAAACAAGTTAGG+TGG | + | chr3_4:78871472-78871491 | Msa0525330:CDS | 35.0% | |
| GAATGCTAAACAAGTTAGGT+GGG | + | chr3_4:78871473-78871492 | Msa0525330:CDS | 35.0% | |
| TAACCAAGTAACACAACCAA+CGG | - | chr3_4:78871523-78871542 | None:intergenic | 35.0% | |
| CTTGGTTAGTAACTGTTCTT+TGG | + | chr3_4:78871535-78871554 | Msa0525330:CDS | 35.0% | |
| !! | TGCTTGGTGCTATTAAGAAA+AGG | + | chr3_4:78871562-78871581 | Msa0525330:CDS | 35.0% |
| ! | TTGTTGCTTACTTTCAAGGT+TGG | + | chr3_4:78871685-78871704 | Msa0525330:CDS | 35.0% |
| ! | TACTTTCAAGGTTGGCATTT+TGG | + | chr3_4:78871693-78871712 | Msa0525330:CDS | 35.0% |
| ! | ACTTTCAAGGTTGGCATTTT+GGG | + | chr3_4:78871694-78871713 | Msa0525330:CDS | 35.0% |
| AGTATGAGGAATGTGCAAAT+TGG | - | chr3_4:78871724-78871743 | None:intergenic | 35.0% | |
| ! | CTTTGGAAATCAGAAGTATG+AGG | - | chr3_4:78871738-78871757 | None:intergenic | 35.0% |
| CTCATACTTCTGATTTCCAA+AGG | + | chr3_4:78871736-78871755 | Msa0525330:CDS | 35.0% | |
| ATACTTCTGATTTCCAAAGG+TGG | + | chr3_4:78871739-78871758 | Msa0525330:CDS | 35.0% | |
| TCCATATGGTTTATGTTGCT+TGG | + | chr3_4:78871763-78871782 | Msa0525330:CDS | 35.0% | |
| ACCAAGCAACATAAACCATA+TGG | - | chr3_4:78871767-78871786 | None:intergenic | 35.0% | |
| ! | TTTGTTTCTTATCCAATCCG+TGG | + | chr3_4:78871848-78871867 | Msa0525330:CDS | 35.0% |
| AAGGTTAAGCCAATGATCAA+TGG | + | chr3_4:78871915-78871934 | Msa0525330:CDS | 35.0% | |
| AGGTTAAGCCAATGATCAAT+GGG | + | chr3_4:78871916-78871935 | Msa0525330:CDS | 35.0% | |
| TCAACATCATCAACCTTGAA+TGG | - | chr3_4:78871945-78871964 | None:intergenic | 35.0% | |
| !! | TTCAAGGTTGATGATGTTGA+AGG | + | chr3_4:78871945-78871964 | Msa0525330:CDS | 35.0% |
| GGAATTTGAACCAAAACCAT+TGG | - | chr3_4:78871987-78872006 | None:intergenic | 35.0% | |
| AAAACTGGAATGCAGAAGTT+CGG | - | chr3_4:78872037-78872056 | None:intergenic | 35.0% | |
| ! | GCATTTGTGTTTCTGAGTTT+AGG | - | chr3_4:78872245-78872264 | None:intergenic | 35.0% |
| ! | TGCACAAATTGACTTTATGC+AGG | + | chr3_4:78872358-78872377 | Msa0525330:intron | 35.0% |
| AATTTCTGCAGTGTGTCAAA+TGG | + | chr3_4:78872394-78872413 | Msa0525330:CDS | 35.0% | |
| GAGCATACAGTGGTTAATTA+AGG | + | chr3_4:78872469-78872488 | Msa0525330:CDS | 35.0% | |
| TGCTTAAGAAAATCAGGGTT+TGG | - | chr3_4:78872650-78872669 | None:intergenic | 35.0% | |
| CTTCACTTAACCTTGAAATG+TGG | - | chr3_4:78872680-78872699 | None:intergenic | 35.0% | |
| TTACAGGATAATCCTGAACT+AGG | + | chr3_4:78872773-78872792 | Msa0525330:intron | 35.0% | |
| ! | TAGATGGTCTTTTGTGAACA+AGG | + | chr3_4:78872808-78872827 | Msa0525330:CDS | 35.0% |
| ! | GGGGTGTTTCTTAATTTCTT+TGG | + | chr3_4:78872902-78872921 | Msa0525330:CDS | 35.0% |
| GAGAACAACTGTAGAAGATA+TGG | + | chr3_4:78872988-78873007 | Msa0525330:CDS | 35.0% | |
| TGATCACCTTGACATCATTT+AGG | - | chr3_4:78873057-78873076 | None:intergenic | 35.0% | |
| ACAGAAGTTCGATTTCATGA+AGG | - | chr3_4:78873155-78873174 | None:intergenic | 35.0% | |
| !!! | TCCAGCAATTTTGAAATCTG+AGG | + | chr3_4:78873327-78873346 | Msa0525330:CDS | 35.0% |
| ACCTCAGATTTCAAAATTGC+TGG | - | chr3_4:78873331-78873350 | None:intergenic | 35.0% | |
| TGAGCAATGTTGTCAAATAG+CGG | + | chr3_4:78873408-78873427 | Msa0525330:intron | 35.0% | |
| TTGCAGATCGCAAAAAATAG+TGG | - | chr3_4:78873559-78873578 | None:intergenic | 35.0% | |
| GAACAAACATGGTTAAAGGA+AGG | - | chr3_4:78873760-78873779 | None:intergenic | 35.0% | |
| ! | TCTGGAACAAACATGGTTAA+AGG | - | chr3_4:78873764-78873783 | None:intergenic | 35.0% |
| TTTAACCATGTTTGTTCCAG+AGG | + | chr3_4:78873763-78873782 | Msa0525330:CDS | 35.0% | |
| ACATAGCAGATCAACCATAA+AGG | - | chr3_4:78873797-78873816 | None:intergenic | 35.0% | |
| TTAAGGATTGACATGCATAC+AGG | - | chr3_4:78873821-78873840 | None:intergenic | 35.0% | |
| AGGAGGTAAGGAACAATAAA+AGG | - | chr3_4:78873869-78873888 | None:intergenic | 35.0% | |
| ! | GTGTTTTCAAAAAGGAGGTA+AGG | - | chr3_4:78873881-78873900 | None:intergenic | 35.0% |
| ! | ACATGGTGTTTTCAAAAAGG+AGG | - | chr3_4:78873886-78873905 | None:intergenic | 35.0% |
| ! | CAGACATGGTGTTTTCAAAA+AGG | - | chr3_4:78873889-78873908 | None:intergenic | 35.0% |
| ATTCATAAGAGCTTCCCAAT+TGG | - | chr3_4:78873946-78873965 | None:intergenic | 35.0% | |
| AATTGGGAAGCTCTTATGAA+TGG | + | chr3_4:78873945-78873964 | Msa0525330:CDS | 35.0% | |
| GAACAACAAAAGATTCACAG+AGG | + | chr3_4:78874043-78874062 | Msa0525330:CDS | 35.0% | |
| TGTTGAGTTACAGCAATTGA+AGG | + | chr3_4:78874084-78874103 | Msa0525330:CDS | 35.0% | |
| ! | TTAGCTTTCTTAACAGGTTC+TGG | - | chr3_4:78874127-78874146 | None:intergenic | 35.0% |
| TGATTAATCAGCAGAAGATG+TGG | - | chr3_4:78874329-78874348 | None:intergenic | 35.0% | |
| CAAGTATTCTATATAGGCAC+TGG | + | chr3_4:78874630-78874649 | Msa0525330:three_prime_UTR | 35.0% | |
| AATGGGTCAAACAGAAATGA+AGG | - | chr3_4:78874861-78874880 | None:intergenic | 35.0% | |
| GGAACAAAAATGCAGAGTGA+GGG | - | chr3_4:78871105-78871124 | None:intergenic | 40.0% | |
| TGGAACAAAAATGCAGAGTG+AGG | - | chr3_4:78871106-78871125 | None:intergenic | 40.0% | |
| TGGATGAAGGATTCACAGAA+AGG | + | chr3_4:78871351-78871370 | Msa0525330:CDS | 40.0% | |
| !! | ACTGTTCTTTGGGATTTGCT+TGG | + | chr3_4:78871546-78871565 | Msa0525330:CDS | 40.0% |
| !! | TGGTGCTATTAAGAAAAGGC+TGG | + | chr3_4:78871566-78871585 | Msa0525330:CDS | 40.0% |
| !!! | TTTGGCTGTTTTGGCTTTTG+AGG | + | chr3_4:78871662-78871681 | Msa0525330:CDS | 40.0% |
| ! | GAGGTTGTTGCTTACTTTCA+AGG | + | chr3_4:78871681-78871700 | Msa0525330:CDS | 40.0% |
| TTTCCAAAGGTGGTTCCATA+TGG | + | chr3_4:78871749-78871768 | Msa0525330:CDS | 40.0% | |
| AAACCATATGGAACCACCTT+TGG | - | chr3_4:78871755-78871774 | None:intergenic | 40.0% | |
| !! | AACTTCGAAAGTGCCTGAAT+TGG | - | chr3_4:78871819-78871838 | None:intergenic | 40.0% |
| ! | GACCGTATGCTTCTTTGTTT+CGG | + | chr3_4:78871870-78871889 | Msa0525330:CDS | 40.0% |
| ! | ACCGTATGCTTCTTTGTTTC+GGG | + | chr3_4:78871871-78871890 | Msa0525330:CDS | 40.0% |
| ! | ACCCGAAACAAAGAAGCATA+CGG | - | chr3_4:78871875-78871894 | None:intergenic | 40.0% |
| !! | TTCTTTGTTTCGGGTGGTTT+TGG | + | chr3_4:78871880-78871899 | Msa0525330:CDS | 40.0% |
| GGTTAAGCCAATGATCAATG+GGG | + | chr3_4:78871917-78871936 | Msa0525330:CDS | 40.0% | |
| AATGGATCCCCATTGATCAT+TGG | - | chr3_4:78871927-78871946 | None:intergenic | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | + | chr3_4:78872004-78872023 | Msa0525330:CDS | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | - | chr3_4:78872008-78872027 | None:intergenic | 40.0% | |
| !! | TGCATTCCAGTTTTGCTATG+AGG | + | chr3_4:78872043-78872062 | Msa0525330:intron | 40.0% |
| TGAATCAGTAAACGATCCCT+TGG | - | chr3_4:78872425-78872444 | None:intergenic | 40.0% | |
| ACAGTGGTTAATTAAGGCTG+AGG | + | chr3_4:78872475-78872494 | Msa0525330:CDS | 40.0% | |
| GTCTCTAAGTGGAACCAAAA+GGG | + | chr3_4:78872497-78872516 | Msa0525330:CDS | 40.0% | |
| GGATAATCCTGAACTAGGTT+TGG | + | chr3_4:78872778-78872797 | Msa0525330:intron | 40.0% | |
| TCACAAAAGACCATCTAGCT+TGG | - | chr3_4:78872805-78872824 | None:intergenic | 40.0% | |
| CCTGCTGTTCTACTTCAAAA+TGG | - | chr3_4:78872877-78872896 | None:intergenic | 40.0% | |
| !!! | CCATTTTGAAGTAGAACAGC+AGG | + | chr3_4:78872874-78872893 | Msa0525330:CDS | 40.0% |
| AAGTAGAACAGCAGGTCAAT+GGG | + | chr3_4:78872882-78872901 | Msa0525330:CDS | 40.0% | |
| ! | TTTGGTTTCAATGGAACTGC+TGG | + | chr3_4:78872920-78872939 | Msa0525330:CDS | 40.0% |
| ATCAAAGCCCTAGAAGAATC+TGG | + | chr3_4:78872953-78872972 | Msa0525330:CDS | 40.0% | |
| TCAAAGCCCTAGAAGAATCT+GGG | + | chr3_4:78872954-78872973 | Msa0525330:CDS | 40.0% | |
| CTGTAAGCTTCATATGACTC+AGG | - | chr3_4:78873253-78873272 | None:intergenic | 40.0% | |
| CTGAGTCATATGAAGCTTAC+AGG | + | chr3_4:78873251-78873270 | Msa0525330:CDS | 40.0% | |
| CACAGCCTAAAAAGTTGCAT+AGG | - | chr3_4:78873304-78873323 | None:intergenic | 40.0% | |
| TATGTTGTAGAGCTATAGCG+CGG | - | chr3_4:78873520-78873539 | None:intergenic | 40.0% | |
| TAGGTGCAGGAAGAATGTTA+AGG | - | chr3_4:78873838-78873857 | None:intergenic | 40.0% | |
| GTATCTGGACTCTTCCAATT+GGG | + | chr3_4:78873929-78873948 | Msa0525330:CDS | 40.0% | |
| TGGATTGTCACAAAGAAAGC+TGG | + | chr3_4:78873965-78873984 | Msa0525330:CDS | 40.0% | |
| TTGTCACAAAGAAAGCTGGA+AGG | + | chr3_4:78873969-78873988 | Msa0525330:CDS | 40.0% | |
| AGAAGTCTGTTATCTGCACA+AGG | + | chr3_4:78874202-78874221 | Msa0525330:CDS | 40.0% | |
| CAATCAAATCAAGGCCTACA+AGG | - | chr3_4:78874270-78874289 | None:intergenic | 40.0% | |
| ! | CTTGTAGGCCTTGATTTGAT+TGG | + | chr3_4:78874268-78874287 | Msa0525330:CDS | 40.0% |
| TCTGCTCTCCAATCAAATCA+AGG | - | chr3_4:78874279-78874298 | None:intergenic | 40.0% | |
| TGGAACGTGAAACACACTAT+TGG | - | chr3_4:78874353-78874372 | None:intergenic | 40.0% | |
| ATAGTGTGTTTCACGTTCCA+AGG | + | chr3_4:78874353-78874372 | Msa0525330:three_prime_UTR | 40.0% | |
| ACTGCAACTTATAGTGTGTG+TGG | - | chr3_4:78874453-78874472 | None:intergenic | 40.0% | |
| !! | CTGTTCTGAGAGTTTCAGAA+AGG | - | chr3_4:78874519-78874538 | None:intergenic | 40.0% |
| ! | GACATTTGGAATGGTGAGAT+AGG | - | chr3_4:78874778-78874797 | None:intergenic | 40.0% |
| ATGAACTCTGCTCAGACATT+TGG | - | chr3_4:78874792-78874811 | None:intergenic | 40.0% | |
| TTCACAGAAAGGAACACCAG+TGG | + | chr3_4:78871362-78871381 | Msa0525330:CDS | 45.0% | |
| ! | AACACCAGTGGTGGTGAAAA+TGG | + | chr3_4:78871374-78871393 | Msa0525330:CDS | 45.0% |
| ATGGTGCAGATGCTGCATTT+AGG | + | chr3_4:78871427-78871446 | Msa0525330:CDS | 45.0% | |
| ! | TTGCCGCGGTTTTTATCTAC+CGG | - | chr3_4:78871453-78871472 | None:intergenic | 45.0% |
| CTTGTTTAGCATTCTTGCCG+CGG | - | chr3_4:78871467-78871486 | None:intergenic | 45.0% | |
| !! | AAAAGGCTGGTTCGTAGACA+GGG | + | chr3_4:78871579-78871598 | Msa0525330:CDS | 45.0% |
| AGGGAGTGGCTGTTGAAAAA+GGG | + | chr3_4:78871598-78871617 | Msa0525330:CDS | 45.0% | |
| CTACATTGCTCCACCAATTC+AGG | + | chr3_4:78871803-78871822 | Msa0525330:CDS | 45.0% | |
| !! | TTCGAAAGTGCCTGAATTGG+TGG | - | chr3_4:78871816-78871835 | None:intergenic | 45.0% |
| ! | ACAAAGAAGCATACGGTCCA+CGG | - | chr3_4:78871868-78871887 | None:intergenic | 45.0% |
| ! | GTATGCTTCTTTGTTTCGGG+TGG | + | chr3_4:78871874-78871893 | Msa0525330:CDS | 45.0% |
| GATCAATGGGGATCCATTCA+AGG | + | chr3_4:78871929-78871948 | Msa0525330:CDS | 45.0% | |
| CTGCAGTGTGTCAAATGGAT+TGG | + | chr3_4:78872399-78872418 | Msa0525330:CDS | 45.0% | |
| !! | TGTGTCAAATGGATTGGCCA+AGG | + | chr3_4:78872405-78872424 | Msa0525330:CDS | 45.0% |
| !! | GTGTCAAATGGATTGGCCAA+GGG | + | chr3_4:78872406-78872425 | Msa0525330:CDS | 45.0% |
| ! | CTGATGATGAGAGCATACAG+TGG | + | chr3_4:78872459-78872478 | Msa0525330:CDS | 45.0% |
| TTAAGGCTGAGGTCTCTAAG+TGG | + | chr3_4:78872486-78872505 | Msa0525330:CDS | 45.0% | |
| GGTCTCTAAGTGGAACCAAA+AGG | + | chr3_4:78872496-78872515 | Msa0525330:CDS | 45.0% | |
| CATAATCTATCGGCATCGCT+TGG | + | chr3_4:78872526-78872545 | Msa0525330:CDS | 45.0% | |
| GTCAGGACTGGATATAAAGC+TGG | + | chr3_4:78872548-78872567 | Msa0525330:CDS | 45.0% | |
| GCAAACTGTGCCACATTTCA+AGG | + | chr3_4:78872667-78872686 | Msa0525330:CDS | 45.0% | |
| ! | TAGGTTTGGTCCAAGCTAGA+TGG | + | chr3_4:78872792-78872811 | Msa0525330:CDS | 45.0% |
| GAAGTAGAACAGCAGGTCAA+TGG | + | chr3_4:78872881-78872900 | Msa0525330:CDS | 45.0% | |
| AGTAGAACAGCAGGTCAATG+GGG | + | chr3_4:78872883-78872902 | Msa0525330:CDS | 45.0% | |
| TCAATGGAACTGCTGGTGTT+TGG | + | chr3_4:78872927-78872946 | Msa0525330:CDS | 45.0% | |
| CAAAGCCCTAGAAGAATCTG+GGG | + | chr3_4:78872955-78872974 | Msa0525330:CDS | 45.0% | |
| AAAGCCCTAGAAGAATCTGG+GGG | + | chr3_4:78872956-78872975 | Msa0525330:CDS | 45.0% | |
| GAGAGTTCTTCAGGGATCTT+TGG | - | chr3_4:78873185-78873204 | None:intergenic | 45.0% | |
| ! | CAGGGCCTATGCAACTTTTT+AGG | + | chr3_4:78873296-78873315 | Msa0525330:CDS | 45.0% |
| AGGTGAAGGAGTAAAAGGGA+AGG | - | chr3_4:78873724-78873743 | None:intergenic | 45.0% | |
| !! | TTCTGCCTCTGGAACAAACA+TGG | - | chr3_4:78873771-78873790 | None:intergenic | 45.0% |
| CATAAAGGAAGTTCTGCCTC+TGG | - | chr3_4:78873782-78873801 | None:intergenic | 45.0% | |
| CAGAGGCAGAACTTCCTTTA+TGG | + | chr3_4:78873780-78873799 | Msa0525330:CDS | 45.0% | |
| GGTATCTGGACTCTTCCAAT+TGG | + | chr3_4:78873928-78873947 | Msa0525330:CDS | 45.0% | |
| TGACACAAGCTGTGAGAAGA+AGG | - | chr3_4:78874183-78874202 | None:intergenic | 45.0% | |
| CAAGGAAGAATGTCATCCCT+TGG | - | chr3_4:78874252-78874271 | None:intergenic | 45.0% | |
| GGGATGACATTCTTCCTTGT+AGG | + | chr3_4:78874253-78874272 | Msa0525330:CDS | 45.0% | |
| !! | TCTATATAGGCACTGGTCAC+TGG | + | chr3_4:78874637-78874656 | Msa0525330:three_prime_UTR | 45.0% |
| CTCTGCTCAGACATTTGGAA+TGG | - | chr3_4:78874787-78874806 | None:intergenic | 45.0% | |
| ACAGAAAGGAACACCAGTGG+TGG | + | chr3_4:78871365-78871384 | Msa0525330:CDS | 50.0% | |
| ! | ACCAGTGGTGGTGAAAATGG+AGG | + | chr3_4:78871377-78871396 | Msa0525330:CDS | 50.0% |
| ! | TCCTCCATTTTCACCACCAC+TGG | - | chr3_4:78871381-78871400 | None:intergenic | 50.0% |
| TGCAGATGCTGCATTTAGGC+CGG | + | chr3_4:78871431-78871450 | Msa0525330:CDS | 50.0% | |
| AGGCCGGTAGATAAAAACCG+CGG | + | chr3_4:78871447-78871466 | Msa0525330:CDS | 50.0% | |
| CTTAAAGCTCATCGTGCCGT+TGG | + | chr3_4:78871504-78871523 | Msa0525330:CDS | 50.0% | |
| ! | GTGCCGTTGGTTGTGTTACT+TGG | + | chr3_4:78871517-78871536 | Msa0525330:CDS | 50.0% |
| !! | GAAAAGGCTGGTTCGTAGAC+AGG | + | chr3_4:78871578-78871597 | Msa0525330:CDS | 50.0% |
| CAGGGAGTGGCTGTTGAAAA+AGG | + | chr3_4:78871597-78871616 | Msa0525330:CDS | 50.0% | |
| GCTTGGACCAAACCTAGTTC+AGG | - | chr3_4:78872788-78872807 | None:intergenic | 50.0% | |
| TCCAACCATTGAGGTGAGCT+CGG | - | chr3_4:78873024-78873043 | None:intergenic | 50.0% | |
| ! | TTTAACTGCAGGTGTCACCG+TGG | + | chr3_4:78873651-78873670 | Msa0525330:intron | 50.0% |
| CGTGTCAGCGCACAATTGAA+TGG | - | chr3_4:78874415-78874434 | None:intergenic | 50.0% | |
| GAAGCATACGGTCCACGGAT+TGG | - | chr3_4:78871863-78871882 | None:intergenic | 55.0% | |
| TCTATCGGCATCGCTTGGTC+AGG | + | chr3_4:78872531-78872550 | Msa0525330:CDS | 55.0% | |
| CCAGCCCCCAGATTCTTCTA+GGG | - | chr3_4:78872963-78872982 | None:intergenic | 55.0% | |
| TCCGAGCTCACCTCAATGGT+TGG | + | chr3_4:78873020-78873039 | Msa0525330:CDS | 55.0% | |
| AGCAACACCGCTGGCATTCA+GGG | + | chr3_4:78873278-78873297 | Msa0525330:CDS | 55.0% | |
| CACAGAGGAGCTTCTGACAG+TGG | + | chr3_4:78874058-78874077 | Msa0525330:CDS | 55.0% | |
| CAACACGGGTTCAGCATCCT+TGG | - | chr3_4:78874373-78874392 | None:intergenic | 55.0% | |
| !! | GCTGGTTCGTAGACAGGGAG+TGG | + | chr3_4:78871584-78871603 | Msa0525330:CDS | 60.0% |
| CCCTAGAAGAATCTGGGGGC+TGG | + | chr3_4:78872960-78872979 | Msa0525330:CDS | 60.0% | |
| GCCAGCCCCCAGATTCTTCT+AGG | - | chr3_4:78872964-78872983 | None:intergenic | 60.0% | |
| ! | AGAAGAATCTGGGGGCTGGC+TGG | + | chr3_4:78872964-78872983 | Msa0525330:CDS | 60.0% |
| GCTGTCCGAGCTCACCTCAA+TGG | + | chr3_4:78873016-78873035 | Msa0525330:CDS | 60.0% | |
| ACAGGAAGCAGCAACACCGC+TGG | + | chr3_4:78873269-78873288 | Msa0525330:CDS | 60.0% | |
| CAGCAACACCGCTGGCATTC+AGG | + | chr3_4:78873277-78873296 | Msa0525330:CDS | 60.0% | |
| GCATAGGCCCTGAATGCCAG+CGG | - | chr3_4:78873288-78873307 | None:intergenic | 60.0% | |
| CGGCATCGCTTGGTCAGGAC+TGG | + | chr3_4:78872536-78872555 | Msa0525330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78870968 | 78874970 | 78870968 | ID=Msa0525330;Name=Msa0525330 |
| chr3_4 | mRNA | 78870968 | 78874970 | 78870968 | ID=Msa0525330-mRNA-1;Parent=Msa0525330;Name=Msa0525330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=353|1|1|1|1|1|5|664|687 |
| chr3_4 | exon | 78870968 | 78872025 | 78870968 | ID=Msa0525330-mRNA-1:exon:23466;Parent=Msa0525330-mRNA-1 |
| chr3_4 | exon | 78872380 | 78872688 | 78872380 | ID=Msa0525330-mRNA-1:exon:23467;Parent=Msa0525330-mRNA-1 |
| chr3_4 | exon | 78872779 | 78873069 | 78872779 | ID=Msa0525330-mRNA-1:exon:23468;Parent=Msa0525330-mRNA-1 |
| chr3_4 | exon | 78873235 | 78873348 | 78873235 | ID=Msa0525330-mRNA-1:exon:23469;Parent=Msa0525330-mRNA-1 |
| chr3_4 | exon | 78873662 | 78874970 | 78873662 | ID=Msa0525330-mRNA-1:exon:23470;Parent=Msa0525330-mRNA-1 |
| chr3_4 | five_prime_UTR | 78870968 | 78871320 | 78870968 | ID=Msa0525330-mRNA-1:five_prime_utr;Parent=Msa0525330-mRNA-1 |
| chr3_4 | CDS | 78871321 | 78872025 | 78871321 | ID=Msa0525330-mRNA-1:cds;Parent=Msa0525330-mRNA-1 |
| chr3_4 | CDS | 78872380 | 78872688 | 78872380 | ID=Msa0525330-mRNA-1:cds;Parent=Msa0525330-mRNA-1 |
| chr3_4 | CDS | 78872779 | 78873069 | 78872779 | ID=Msa0525330-mRNA-1:cds;Parent=Msa0525330-mRNA-1 |
| chr3_4 | CDS | 78873235 | 78873348 | 78873235 | ID=Msa0525330-mRNA-1:cds;Parent=Msa0525330-mRNA-1 |
| chr3_4 | CDS | 78873662 | 78874306 | 78873662 | ID=Msa0525330-mRNA-1:cds;Parent=Msa0525330-mRNA-1 |
| chr3_4 | three_prime_UTR | 78874307 | 78874970 | 78874307 | ID=Msa0525330-mRNA-1:three_prime_utr;Parent=Msa0525330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
