AlfalfaGEDB | Msa0433470

M. sativa cultivar zhongmu-4 / Msa0433470

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF13632.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433470	XP_003603555.1	99.127	687	6	0	1	687	1	687	0.0	1403

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433470	sp\|Q9SB75\|CSLC5_ARATH	79.654	693	134	5	1	687	1	692	0.0	1105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433470	G7J2T7	99.127	687	6	0	1	687	1	687	0.0	1403

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0136650	Msa0433470	0.817851	2.661062e-52	-8.615850e-47
Msa0222560	Msa0433470	0.818710	1.700595e-52	-8.615850e-47
Msa0301820	Msa0433470	0.811900	5.554594e-51	-8.615850e-47
Msa0307280	Msa0433470	0.803487	3.405515e-49	-8.615850e-47
Msa0380620	Msa0433470	0.805421	1.345581e-49	-8.615850e-47
Msa0383320	Msa0433470	0.939347	1.480751e-99	-8.615850e-47
Msa0390970	Msa0433470	0.812852	3.441060e-51	-8.615850e-47
Msa0430260	Msa0433470	0.823828	1.122260e-53	-8.615850e-47
Msa0433470	Msa0477190	0.863417	2.527401e-64	-8.615850e-47
Msa0433470	Msa0500380	0.813051	3.112286e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433470	MtrunA17_Chr3g0139081	99.127	687	6	0	1	687	1	687	0.0	1403
Msa0433470	MtrunA17_Chr4g0000581	74.253	703	161	7	1	687	1	699	0.0	1043
Msa0433470	MtrunA17_Chr3g0135191	65.211	710	212	10	1	687	1	698	0.0	900
Msa0433470	MtrunA17_Chr6g0451381	66.865	673	206	6	19	687	7	666	0.0	897
Msa0433470	MtrunA17_Chr8g0339101	60.790	709	245	8	2	687	4	702	0.0	840
Msa0433470	MtrunA17_Chr1g0179381	42.481	532	269	5	155	683	19	516	9.24e-145	432
Msa0433470	MtrunA17_Chr1g0179441	42.105	532	272	5	155	683	19	517	3.23e-144	431
Msa0433470	MtrunA17_Chr1g0179421	41.541	532	275	4	155	683	19	517	2.46e-143	428
Msa0433470	MtrunA17_Chr7g0265711	41.917	532	273	5	155	683	28	526	4.32e-142	426
Msa0433470	MtrunA17_Chr1g0198111	45.188	478	229	4	207	683	79	524	1.90e-141	424

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0433470	AT4G31590.1	79.654	693	134	5	1	687	1	692	0.0	1105
Msa0433470	AT2G24630.1	76.734	692	154	5	1	687	1	690	0.0	1085
Msa0433470	AT2G24630.2	76.734	692	154	5	1	687	1	690	0.0	1085
Msa0433470	AT3G28180.1	66.618	689	187	8	21	687	6	673	0.0	915
Msa0433470	AT4G07960.1	64.316	709	219	9	1	686	1	698	0.0	882
Msa0433470	AT4G07960.2	64.316	709	219	9	1	686	1	698	0.0	882
Msa0433470	AT3G07330.1	61.842	684	250	5	6	687	8	682	0.0	857
Msa0433470	AT3G07330.2	61.842	684	250	5	6	687	8	682	0.0	857
Msa0433470	AT5G03760.1	42.830	530	263	9	159	683	33	527	1.54e-141	424
Msa0433470	AT5G22740.1	41.353	532	278	5	155	683	29	529	1.69e-140	422

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Find 188 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTGGTTCGTAGACA+GGG	0.541112	3_2:-85966761	Msa0433470:CDS
AAACCATATGGAACCACCTT+TGG	0.363318	3_2:+85966588	None:intergenic
AAAGCCCTAGAAGAATCTGG+GGG	0.740097	3_2:-85965384	Msa0433470:CDS
AAAGGAAAAGATTTAGGTGC+AGG	0.463485	3_2:+85964492	None:intergenic
AAATAAGGTGAAGGAGTAAA+AGG	0.246621	3_2:+85964614	None:intergenic
AAATTTAATGCAATGGTATC+TGG	0.270707	3_2:-85964426	Msa0433470:CDS
AACACCAGTGGTGGTGAAAA+TGG	0.333264	3_2:-85966966	Msa0433470:CDS
AACTTCGAAAGTGCCTGAAT+TGG	0.444764	3_2:+85966524	None:intergenic
AAGACACCTAACATTGGAAA+AGG	0.469988	3_2:+85967266	None:intergenic
AAGGTTAAGCCAATGATCAA+TGG	0.477569	3_2:-85966425	Msa0433470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATAAGACACAAACTTTCA+AGG	+	chr3_2:85963454-85963473	None:intergenic	30.0%
TGTGAAACTGTGATTTACAA+TGG	-	chr3_2:85963722-85963741	Msa0433470:three_prime_UTR	30.0%
CAACTTGAAAAATCCAATCT+TGG	+	chr3_2:85963750-85963769	None:intergenic	30.0%
ATCTTCACAACTGAGAAATT+GGG	+	chr3_2:85963825-85963844	None:intergenic	30.0%
AATCTTCACAACTGAGAAAT+TGG	+	chr3_2:85963826-85963845	None:intergenic	30.0%
TTCTCAGTTGTGAAGATTAA+TGG	-	chr3_2:85963828-85963847	Msa0433470:three_prime_UTR	30.0%
TTGGTTAGTAACTGTTCTTT+GGG	-	chr3_2:85963956-85963975	Msa0433470:three_prime_UTR	30.0%
ATCTGTATGCATTTATCCAA+TGG	-	chr3_2:85964388-85964407	Msa0433470:CDS	30.0%
TAAAAACCTCATAGCAAAAC+TGG	+	chr3_2:85964472-85964491	None:intergenic	30.0%
GAGATTGCAGAAAATTCTTA+AGG	+	chr3_2:85964643-85964662	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	85963391	85967391	85963391	ID=Msa0433470;Name=Msa0433470
chr3_2	mRNA	85963391	85967391	85963391	ID=Msa0433470-mRNA-1;Parent=Msa0433470;Name=Msa0433470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=350\|1\|1\|1\|1\|1\|5\|665\|687
chr3_2	exon	85963391	85964700	85963391	ID=Msa0433470-mRNA-1:exon:24744;Parent=Msa0433470-mRNA-1
chr3_2	exon	85965014	85965127	85965014	ID=Msa0433470-mRNA-1:exon:24743;Parent=Msa0433470-mRNA-1
chr3_2	exon	85965293	85965583	85965293	ID=Msa0433470-mRNA-1:exon:24742;Parent=Msa0433470-mRNA-1
chr3_2	exon	85965674	85965982	85965674	ID=Msa0433470-mRNA-1:exon:24741;Parent=Msa0433470-mRNA-1
chr3_2	exon	85966337	85967391	85966337	ID=Msa0433470-mRNA-1:exon:24740;Parent=Msa0433470-mRNA-1
chr3_2	five_prime_UTR	85967042	85967391	85967042	ID=Msa0433470-mRNA-1:five_prime_utr;Parent=Msa0433470-mRNA-1
chr3_2	CDS	85966337	85967041	85966337	ID=Msa0433470-mRNA-1:cds;Parent=Msa0433470-mRNA-1
chr3_2	CDS	85965674	85965982	85965674	ID=Msa0433470-mRNA-1:cds;Parent=Msa0433470-mRNA-1
chr3_2	CDS	85965293	85965583	85965293	ID=Msa0433470-mRNA-1:cds;Parent=Msa0433470-mRNA-1
chr3_2	CDS	85965014	85965127	85965014	ID=Msa0433470-mRNA-1:cds;Parent=Msa0433470-mRNA-1
chr3_2	CDS	85964056	85964700	85964056	ID=Msa0433470-mRNA-1:cds;Parent=Msa0433470-mRNA-1
chr3_2	three_prime_UTR	85963391	85964055	85963391	ID=Msa0433470-mRNA-1:three_prime_utr;Parent=Msa0433470-mRNA-1

Gene Sequence

>Msa0433470

ATGGCTCCAAGATTGGATTTTTCAAGTTGGTGGATGAAGGATTCACAGAAAGGAACACCAGTGGTGGTGAAAATGGAGGACCCCAATTTCTCAGTTGTGAAGATTAATGGTGCAGATGCTGCATTTAGGCCGGTAGATAAAAACCGCGGCAAGAATGCTAAACAAGTTAGGTGGGTTTTGCTTCTTAAAGCTCATCGTGCCGTTGGTTGTGTTACTTGGTTAGTAACTGTTCTTTGGGATTTGCTTGGTGCTATTAAGAAAAGGCTGGTTCGTAGACAGGGAGTGGCTGTTGAAAAAGGGAAATTGTTGTTTAGAATCATTAGTTTGTTTTTGTTAATTTCTTTGGCTGTTTTGGCTTTTGAGGTTGTTGCTTACTTTCAAGGTTGGCATTTTGGGAATACCAATTTGCACATTCCTCATACTTCTGATTTCCAAAGGTGGTTCCATATGGTTTATGTTGCTTGGTTGACGTTTCGTGCTGACTACATTGCTCCACCAATTCAGGCACTTTCGAAGTTTTGTATTGTTTTGTTTCTTATCCAATCCGTGGACCGTATGCTTCTTTGTTTCGGGTGGTTTTGGATCAAATTCAAGAAGGTTAAGCCAATGATCAATGGGGATCCATTCAAGGTTGATGATGTTGAAGGATCTGTATGCATTTATCCAATGGTTTTGGTTCAAATTCCAATGTGCAATGAGAAAGAGGTGTATGAGCAGTCAATTTCTGCAGTGTGTCAAATGGATTGGCCAAGGGATCGTTTACTGATTCAAGTACTTGACGATTCTGATGATGAGAGCATACAGTGGTTAATTAAGGCTGAGGTCTCTAAGTGGAACCAAAAGGGAATCAACATAATCTATCGGCATCGCTTGGTCAGGACTGGATATAAAGCTGGAAATCTTAATTCTGCAATGAACTGTGACTACGTGAAAGACTATGAATTTGTTGCAATATTTGATGCAGACTTTCAACCAAACCCTGATTTTCTTAAGCAAACTGTGCCACATTTCAAGGATAATCCTGAACTAGGTTTGGTCCAAGCTAGATGGTCTTTTGTGAACAAGGATGAGAATTTGTTGACTCGTCTCCAAAACATAAATTTATGCTTCCATTTTGAAGTAGAACAGCAGGTCAATGGGGTGTTTCTTAATTTCTTTGGTTTCAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTAGAAGAATCTGGGGGCTGGCTGGAGAGAACAACTGTAGAAGATATGGACATTGCTGTCCGAGCTCACCTCAATGGTTGGAAATTTATCTTCCTAAATGATGTCAAGGTACTTTGTGAAGTTCCTGAGTCATATGAAGCTTACAGGAAGCAGCAACACCGCTGGCATTCAGGGCCTATGCAACTTTTTAGGCTGTGTCTTCCAGCAATTTTGAAATCTGAGGTGTCACCGTGGAAGAAAGCAAACTTAATTCTGCTATTTTTTCTGCTAAGGAAACTAATCCTTCCCTTTTACTCCTTCACCTTATTTTGCATAATCCTTCCTTTAACCATGTTTGTTCCAGAGGCAGAACTTCCTTTATGGTTGATCTGCTATGTTCCTGTATGCATGTCAATCCTTAACATTCTTCCTGCACCTAAATCTTTTCCTTTTATTGTTCCTTACCTCCTTTTTGAAAACACCATGTCTGTGACTAAATTTAATGCAATGGTATCTGGACTCTTCCAATTGGGAAGCTCTTATGAATGGATTGTCACAAAGAAAGCTGGAAGGTCATCAGAATCTGACTTACTTGCTGCTGCAGAAAGAGAAACCGAGTCAATAGAACAACAAAAGATTCACAGAGGAGCTTCTGACAGTGGACTTGTTGAGTTACAGCAATTGAAGGAACTCAAAGAAGCAGTTCCAGAACCTGTTAAGAAAGCTAACAAGATATATAAAAAAGAGCTGACTTTGGCATTCCTTCTTCTCACAGCTTGTGTCAGAAGTCTGTTATCTGCACAAGGAGTTCATTTCTACTTTCTGTTTTTCCAAGGGATGACATTCTTCCTTGTAGGCCTTGATTTGATTGGAGAGCAGATGAGCTAG

Protein sequence

>Msa0433470

MAPRLDFSSWWMKDSQKGTPVVVKMEDPNFSVVKINGADAAFRPVDKNRGKNAKQVRWVLLLKAHRAVGCVTWLVTVLWDLLGAIKKRLVRRQGVAVEKGKLLFRIISLFLLISLAVLAFEVVAYFQGWHFGNTNLHIPHTSDFQRWFHMVYVAWLTFRADYIAPPIQALSKFCIVLFLIQSVDRMLLCFGWFWIKFKKVKPMINGDPFKVDDVEGSVCIYPMVLVQIPMCNEKEVYEQSISAVCQMDWPRDRLLIQVLDDSDDESIQWLIKAEVSKWNQKGINIIYRHRLVRTGYKAGNLNSAMNCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAILKSEVSPWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWLICYVPVCMSILNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERETESIEQQKIHRGASDSGLVELQQLKELKEAVPEPVKKANKIYKKELTLAFLLLTACVRSLLSAQGVHFYFLFFQGMTFFLVGLDLIGEQMS*