AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0525910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525910 MtrunA17_Chr7g0272611 99.281 139 1 0 1 139 1 139 6.15e-98 278
Msa0525910 MtrunA17_Chr2g0327951 82.203 118 21 0 23 140 56 173 8.70e-68 203
Msa0525910 MtrunA17_Chr4g0031041 85.455 110 16 0 23 132 15 124 3.58e-66 197
Msa0525910 MtrunA17_Chr4g0031001 81.897 116 18 1 26 141 24 136 1.04e-64 194
Msa0525910 MtrunA17_Chr4g0031651 85.047 107 16 0 26 132 24 130 2.06e-64 193
Msa0525910 MtrunA17_Chr2g0327931 80.172 116 23 0 26 141 23 138 3.59e-64 192
Msa0525910 MtrunA17_Chr8g0379311 81.034 116 19 1 26 141 24 136 9.64e-64 191
Msa0525910 MtrunA17_Chr4g0035621 75.758 132 30 1 1 132 1 130 1.07e-63 191
Msa0525910 MtrunA17_Chr4g0032301 84.112 107 17 0 26 132 24 130 2.98e-63 190
Msa0525910 MtrunA17_Chr7g0268831 71.970 132 33 1 1 132 1 128 5.45e-62 186
Msa0525910 MtrunA17_Chr7g0273351 73.810 126 31 1 7 132 2 125 7.01e-61 184
Msa0525910 MtrunA17_Chr7g0273331 73.810 126 31 1 7 132 58 181 4.26e-60 184
Msa0525910 MtrunA17_Chr7g0259151 72.727 132 34 2 6 137 3 132 8.04e-60 181
Msa0525910 MtrunA17_Chr2g0319191 77.679 112 25 0 21 132 11 122 3.56e-59 179
Msa0525910 MtrunA17_Chr2g0319181 78.899 109 23 0 24 132 14 122 1.07e-58 178
Msa0525910 MtrunA17_Chr6g0449661 79.661 118 13 3 26 140 85 194 1.61e-58 180
Msa0525910 MtrunA17_Chr3g0119971 78.632 117 14 3 27 140 81 189 1.05e-57 177
Msa0525910 MtrunA17_Chr7g0273341 66.667 123 28 3 10 132 44 153 1.83e-47 150
Msa0525910 MtrunA17_Chr4g0031031 83.784 74 12 0 47 120 10 83 3.32e-39 128
Msa0525910 MtrunA17_Chr1g0148961 54.032 124 55 2 10 132 10 132 3.31e-37 124
Msa0525910 MtrunA17_Chr1g0148951 54.032 124 55 2 10 132 10 132 3.31e-37 124
Msa0525910 MtrunA17_Chr1g0211651 53.782 119 53 2 13 130 10 127 2.54e-36 121
Msa0525910 MtrunA17_Chr1g0184901 57.692 104 42 2 28 130 28 130 1.27e-34 117
Msa0525910 MtrunA17_Chr4g0024701 46.667 105 36 2 26 130 26 110 1.87e-22 85.5
Msa0525910 MtrunA17_Chr1g0183701 60.938 64 25 0 69 132 30 93 1.74e-19 77.8
Msa0525910 MtrunA17_Chr4g0000531 68.889 45 14 0 87 131 5 49 1.68e-14 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525910 AT5G27670.1 78.261 138 30 0 4 141 3 140 8.72e-79 229
Msa0525910 AT5G02560.1 81.356 118 22 0 23 140 21 138 1.74e-66 199
Msa0525910 AT5G59870.1 72.662 139 33 2 7 140 3 141 2.47e-65 196
Msa0525910 AT5G02560.2 67.606 142 22 1 23 140 21 162 1.26e-60 185
Msa0525910 AT1G51060.1 74.167 120 31 0 21 140 11 130 1.74e-60 183
Msa0525910 AT1G08880.1 72.222 126 31 1 10 131 2 127 2.55e-59 180
Msa0525910 AT4G27230.2 72.500 120 33 0 21 140 11 130 8.05e-59 179
Msa0525910 AT4G27230.1 72.500 120 33 0 21 140 11 130 8.05e-59 179
Msa0525910 AT5G54640.1 75.862 116 28 0 21 136 11 126 8.42e-59 178
Msa0525910 AT1G54690.1 70.866 127 33 1 10 132 2 128 9.92e-59 179
Msa0525910 AT3G20670.1 71.901 121 34 0 21 141 11 131 2.13e-58 177
Msa0525910 AT2G38810.1 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa0525910 AT2G38810.4 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa0525910 AT2G38810.3 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa0525910 AT2G38810.2 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa0525910 AT1G52740.1 56.190 105 44 2 27 130 27 130 1.02e-34 117
Msa0525910 AT3G54560.1 56.481 108 43 3 27 132 29 134 7.43e-34 115
Msa0525910 AT3G54560.2 56.481 108 43 3 27 132 29 134 7.43e-34 115
Msa0525910 AT4G13570.1 45.161 93 47 3 34 124 28 118 1.15e-19 79.0
Msa0525910 AT4G13570.2 40.566 106 59 3 21 124 21 124 1.26e-19 79.0

Find 48 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACACAGGGTTAATATT+TGG 0.220863 3_4:+79556442 None:intergenic
AGGAATGTGAAATTGGAATT+TGG 0.240114 3_4:+79556963 None:intergenic
ATGTAGTGGTTTGTTAAATA+TGG 0.242903 3_4:-79556243 Msa0525910:three_prime_UTR
GTAAAATAGGAATGTGAAAT+TGG 0.292099 3_4:+79556956 None:intergenic
ATGGAGGGAATGAGTAAAAT+AGG 0.297025 3_4:+79556943 None:intergenic
GGGGAATTGAAGACCGGCTT+TGG 0.356697 3_4:+79556795 None:intergenic
GTGAGGAACGATGATGAATT+AGG 0.390738 3_4:-79556508 Msa0525910:CDS
GGTTGTAGTTGTTGTGGTGG+TGG 0.425621 3_4:+79556876 None:intergenic
AACCTAGCTATACGACCAAC+GGG 0.429162 3_4:+79556775 None:intergenic
TCTTCCACCGGCACCTTTGG+TGG 0.442255 3_4:+79556855 None:intergenic
TGTAGTTGTTGTGGTGGTGG+TGG 0.444305 3_4:+79556879 None:intergenic
TATTCTCAGCGTGTTGGCAC+TGG 0.452088 3_4:-79556736 Msa0525910:CDS
TTTAGATCTAACTATTTCGT+TGG 0.454793 3_4:-79556273 Msa0525910:three_prime_UTR
TGTAATGTAGGTTCTTGAAT+TGG 0.463460 3_4:-79556593 Msa0525910:intron
ACAGCAAGGCACACGTGTCT+AGG 0.469171 3_4:+79556529 None:intergenic
ATGTAGGTTCTTGAATTGGC+TGG 0.481956 3_4:-79556589 Msa0525910:intron
TTTATTGAAGTGCATTTACA+TGG 0.483044 3_4:-79556330 Msa0525910:three_prime_UTR
AAAGGTGCCGGTGGAAGAAA+AGG 0.504433 3_4:-79556850 Msa0525910:CDS
TGTAGGTTCTTGAATTGGCT+GGG 0.516295 3_4:-79556588 Msa0525910:intron
AGAACGGCGGCGAGGTAGAT+CGG 0.519256 3_4:+79556709 None:intergenic
TCCCCGTTGGTCGTATAGCT+AGG 0.519588 3_4:-79556777 Msa0525910:CDS
GAATTGAAGACCGGCTTTGG+AGG 0.520441 3_4:+79556798 None:intergenic
GAATTAGGAAAATTGCTTCA+AGG 0.523033 3_4:-79556493 Msa0525910:CDS
CAGCAAGGCACACGTGTCTA+GGG 0.534173 3_4:+79556530 None:intergenic
TTTGGTGGTTGTAGTTGTTG+TGG 0.545704 3_4:+79556870 None:intergenic
GGTGGTTGTAGTTGTTGTGG+TGG 0.550499 3_4:+79556873 None:intergenic
ATAGCTAGGTTCATGAAGAA+AGG 0.556055 3_4:-79556763 Msa0525910:CDS
GTGGAAGAAAAGGCGGCGAA+AGG 0.564273 3_4:-79556840 Msa0525910:CDS
TCGTTGGATGATAAATGTAG+TGG 0.571863 3_4:-79556257 Msa0525910:three_prime_UTR
GTTTCAAAATCCTCCAAAGC+CGG 0.573530 3_4:-79556808 Msa0525910:CDS
ACTACAACCACCAAAGGTGC+CGG 0.576198 3_4:-79556862 Msa0525910:CDS
GCCGGTCTTCAATTCCCCGT+TGG 0.577353 3_4:-79556790 Msa0525910:CDS
GCCAAAGAAAACCGTTGCTG+CGG 0.590680 3_4:-79556419 Msa0525910:CDS
TCTCGAATATCTCGCTGCCG+AGG 0.591297 3_4:-79556689 Msa0525910:intron
GAACCTAGCTATACGACCAA+CGG 0.599597 3_4:+79556774 None:intergenic
GGTCGCTATTCTCAGCGTGT+TGG 0.618289 3_4:-79556742 Msa0525910:CDS
ACCAACGGGGAATTGAAGAC+CGG 0.624424 3_4:+79556789 None:intergenic
ACAACAACTACAACCACCAA+AGG 0.640375 3_4:-79556868 Msa0525910:CDS
CATCATCGTTCCTCACAGCA+AGG 0.645037 3_4:+79556515 None:intergenic
ACAACCACCAAAGGTGCCGG+TGG 0.649704 3_4:-79556859 Msa0525910:CDS
GGTGTGACAATTGCTAGTGG+TGG 0.656244 3_4:-79556472 Msa0525910:CDS
GACACGTGTGCCTTGCTGTG+AGG 0.657788 3_4:-79556525 Msa0525910:CDS
GGCAGCGAGATATTCGAGAA+CGG 0.664119 3_4:+79556693 None:intergenic
CAAGGTGTGACAATTGCTAG+TGG 0.675402 3_4:-79556475 Msa0525910:CDS
GGTGCCGGTGGAAGAAAAGG+CGG 0.678900 3_4:-79556847 Msa0525910:CDS
GATATTCGAGAACGGCGGCG+AGG 0.697780 3_4:+79556701 None:intergenic
AGCGAGATATTCGAGAACGG+CGG 0.709556 3_4:+79556696 None:intergenic
ACCTAGCTATACGACCAACG+GGG 0.792421 3_4:+79556776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAAAAACAA+TGG - chr3_4:79556282-79556301 Msa0525910:three_prime_UTR 10.0%
!!! TTTGTAATTAATTAATGTTT+TGG - chr3_4:79556564-79556583 Msa0525910:CDS 10.0%
!! AAAAAAAAAAGAAAAAACAA+TGG - chr3_4:79556282-79556301 Msa0525910:three_prime_UTR 10.0%
!!! TTTGTAATTAATTAATGTTT+TGG - chr3_4:79556564-79556583 Msa0525910:CDS 10.0%
!! AAGCGAAATTCATAATTAAT+CGG - chr3_4:79556539-79556558 Msa0525910:CDS 20.0%
!! AAGCGAAATTCATAATTAAT+CGG - chr3_4:79556539-79556558 Msa0525910:CDS 20.0%
! GTAAAATAGGAATGTGAAAT+TGG + chr3_4:79556234-79556253 None:intergenic 25.0%
!!! GAATTTCGCTTTGAAATATA+CGG + chr3_4:79556530-79556549 None:intergenic 25.0%
! TTTATTGAAGTGCATTTACA+TGG - chr3_4:79556857-79556876 Msa0525910:CDS 25.0%
! TTTAGATCTAACTATTTCGT+TGG - chr3_4:79556914-79556933 Msa0525910:five_prime_UTR 25.0%
!!! ATGTAGTGGTTTGTTAAATA+TGG - chr3_4:79556944-79556963 Msa0525910:five_prime_UTR 25.0%
! GTAAAATAGGAATGTGAAAT+TGG + chr3_4:79556234-79556253 None:intergenic 25.0%
!!! GAATTTCGCTTTGAAATATA+CGG + chr3_4:79556530-79556549 None:intergenic 25.0%
! TTTATTGAAGTGCATTTACA+TGG - chr3_4:79556857-79556876 Msa0525910:CDS 25.0%
! TTTAGATCTAACTATTTCGT+TGG - chr3_4:79556914-79556933 Msa0525910:five_prime_UTR 25.0%
!!! ATGTAGTGGTTTGTTAAATA+TGG - chr3_4:79556944-79556963 Msa0525910:five_prime_UTR 25.0%
AGGAATGTGAAATTGGAATT+TGG + chr3_4:79556227-79556246 None:intergenic 30.0%
!!! TTTTTTTTGCGATCCGAAAA+TGG + chr3_4:79556266-79556285 None:intergenic 30.0%
GAAATATACGGAAAATACCT+CGG + chr3_4:79556518-79556537 None:intergenic 30.0%
TTTGGTATGTGATGTAATGT+AGG - chr3_4:79556582-79556601 Msa0525910:CDS 30.0%
TGTAATGTAGGTTCTTGAAT+TGG - chr3_4:79556594-79556613 Msa0525910:intron 30.0%
GAATTAGGAAAATTGCTTCA+AGG - chr3_4:79556694-79556713 Msa0525910:CDS 30.0%
AACAACACAGGGTTAATATT+TGG + chr3_4:79556748-79556767 None:intergenic 30.0%
AGGAATGTGAAATTGGAATT+TGG + chr3_4:79556227-79556246 None:intergenic 30.0%
!!! TTTTTTTTGCGATCCGAAAA+TGG + chr3_4:79556266-79556285 None:intergenic 30.0%
GAAATATACGGAAAATACCT+CGG + chr3_4:79556518-79556537 None:intergenic 30.0%
TTTGGTATGTGATGTAATGT+AGG - chr3_4:79556582-79556601 Msa0525910:CDS 30.0%
TGTAATGTAGGTTCTTGAAT+TGG - chr3_4:79556594-79556613 Msa0525910:intron 30.0%
GAATTAGGAAAATTGCTTCA+AGG - chr3_4:79556694-79556713 Msa0525910:CDS 30.0%
AACAACACAGGGTTAATATT+TGG + chr3_4:79556748-79556767 None:intergenic 30.0%
ATGGAGGGAATGAGTAAAAT+AGG + chr3_4:79556247-79556266 None:intergenic 35.0%
! TTACTCATTCCCTCCATTTT+CGG - chr3_4:79556250-79556269 Msa0525910:three_prime_UTR 35.0%
ATAGCTAGGTTCATGAAGAA+AGG - chr3_4:79556424-79556443 Msa0525910:CDS 35.0%
! TTTTCTTTGGCAACAACACA+GGG + chr3_4:79556759-79556778 None:intergenic 35.0%
TCGTTGGATGATAAATGTAG+TGG - chr3_4:79556930-79556949 Msa0525910:five_prime_UTR 35.0%
GGATGAAGTGTGATAAAGAT+TGG + chr3_4:79556206-79556225 None:intergenic 35.0%
ATGGAGGGAATGAGTAAAAT+AGG + chr3_4:79556247-79556266 None:intergenic 35.0%
! TTACTCATTCCCTCCATTTT+CGG - chr3_4:79556250-79556269 Msa0525910:three_prime_UTR 35.0%
ATAGCTAGGTTCATGAAGAA+AGG - chr3_4:79556424-79556443 Msa0525910:CDS 35.0%
! TTTTCTTTGGCAACAACACA+GGG + chr3_4:79556759-79556778 None:intergenic 35.0%
TCGTTGGATGATAAATGTAG+TGG - chr3_4:79556930-79556949 Msa0525910:five_prime_UTR 35.0%
! TTTTGCGATCCGAAAATGGA+GGG + chr3_4:79556262-79556281 None:intergenic 40.0%
! TTTTTGCGATCCGAAAATGG+AGG + chr3_4:79556263-79556282 None:intergenic 40.0%
! TTTGGTGGTTGTAGTTGTTG+TGG + chr3_4:79556320-79556339 None:intergenic 40.0%
ACAACAACTACAACCACCAA+AGG - chr3_4:79556319-79556338 Msa0525910:three_prime_UTR 40.0%
!!! GGCTTTGGAGGATTTTGAAA+CGG + chr3_4:79556380-79556399 None:intergenic 40.0%
GTTTCAAAATCCTCCAAAGC+CGG - chr3_4:79556379-79556398 Msa0525910:three_prime_UTR 40.0%
ATGTAGGTTCTTGAATTGGC+TGG - chr3_4:79556598-79556617 Msa0525910:intron 40.0%
TGTAGGTTCTTGAATTGGCT+GGG - chr3_4:79556599-79556618 Msa0525910:intron 40.0%
GTGAGGAACGATGATGAATT+AGG - chr3_4:79556679-79556698 Msa0525910:intron 40.0%
! GTTTTCTTTGGCAACAACAC+AGG + chr3_4:79556760-79556779 None:intergenic 40.0%
! TTTTGCGATCCGAAAATGGA+GGG + chr3_4:79556262-79556281 None:intergenic 40.0%
! TTTTTGCGATCCGAAAATGG+AGG + chr3_4:79556263-79556282 None:intergenic 40.0%
! TTTGGTGGTTGTAGTTGTTG+TGG + chr3_4:79556320-79556339 None:intergenic 40.0%
ACAACAACTACAACCACCAA+AGG - chr3_4:79556319-79556338 Msa0525910:three_prime_UTR 40.0%
!!! GGCTTTGGAGGATTTTGAAA+CGG + chr3_4:79556380-79556399 None:intergenic 40.0%
GTTTCAAAATCCTCCAAAGC+CGG - chr3_4:79556379-79556398 Msa0525910:three_prime_UTR 40.0%
ATGTAGGTTCTTGAATTGGC+TGG - chr3_4:79556598-79556617 Msa0525910:intron 40.0%
TGTAGGTTCTTGAATTGGCT+GGG - chr3_4:79556599-79556618 Msa0525910:intron 40.0%
GTGAGGAACGATGATGAATT+AGG - chr3_4:79556679-79556698 Msa0525910:intron 40.0%
! GTTTTCTTTGGCAACAACAC+AGG + chr3_4:79556760-79556779 None:intergenic 40.0%
AACCTAGCTATACGACCAAC+GGG + chr3_4:79556415-79556434 None:intergenic 45.0%
GAACCTAGCTATACGACCAA+CGG + chr3_4:79556416-79556435 None:intergenic 45.0%
CAAGGTGTGACAATTGCTAG+TGG - chr3_4:79556712-79556731 Msa0525910:CDS 45.0%
! AGTAGTTTTCTCCGCAGCAA+CGG + chr3_4:79556782-79556801 None:intergenic 45.0%
AACCTAGCTATACGACCAAC+GGG + chr3_4:79556415-79556434 None:intergenic 45.0%
GAACCTAGCTATACGACCAA+CGG + chr3_4:79556416-79556435 None:intergenic 45.0%
CAAGGTGTGACAATTGCTAG+TGG - chr3_4:79556712-79556731 Msa0525910:CDS 45.0%
! AGTAGTTTTCTCCGCAGCAA+CGG + chr3_4:79556782-79556801 None:intergenic 45.0%
!! TGTAGTTGTTGTGGTGGTGG+TGG + chr3_4:79556311-79556330 None:intergenic 50.0%
GGTTGTAGTTGTTGTGGTGG+TGG + chr3_4:79556314-79556333 None:intergenic 50.0%
GGTGGTTGTAGTTGTTGTGG+TGG + chr3_4:79556317-79556336 None:intergenic 50.0%
! ACTACAACCACCAAAGGTGC+CGG - chr3_4:79556325-79556344 Msa0525910:three_prime_UTR 50.0%
! TTTTCTTCCACCGGCACCTT+TGG + chr3_4:79556338-79556357 None:intergenic 50.0%
!! AAAGGTGCCGGTGGAAGAAA+AGG - chr3_4:79556337-79556356 Msa0525910:three_prime_UTR 50.0%
! GAATTGAAGACCGGCTTTGG+AGG + chr3_4:79556392-79556411 None:intergenic 50.0%
ACCAACGGGGAATTGAAGAC+CGG + chr3_4:79556401-79556420 None:intergenic 50.0%
ACCTAGCTATACGACCAACG+GGG + chr3_4:79556414-79556433 None:intergenic 50.0%
! TATTCTCAGCGTGTTGGCAC+TGG - chr3_4:79556451-79556470 Msa0525910:CDS 50.0%
AGCGAGATATTCGAGAACGG+CGG + chr3_4:79556494-79556513 None:intergenic 50.0%
GGCAGCGAGATATTCGAGAA+CGG + chr3_4:79556497-79556516 None:intergenic 50.0%
CATCATCGTTCCTCACAGCA+AGG + chr3_4:79556675-79556694 None:intergenic 50.0%
GGTGTGACAATTGCTAGTGG+TGG - chr3_4:79556715-79556734 Msa0525910:CDS 50.0%
GCCAAAGAAAACCGTTGCTG+CGG - chr3_4:79556768-79556787 Msa0525910:CDS 50.0%
! TCCGCAGCAACGGTTTTCTT+TGG + chr3_4:79556772-79556791 None:intergenic 50.0%
!! TGTAGTTGTTGTGGTGGTGG+TGG + chr3_4:79556311-79556330 None:intergenic 50.0%
GGTTGTAGTTGTTGTGGTGG+TGG + chr3_4:79556314-79556333 None:intergenic 50.0%
GGTGGTTGTAGTTGTTGTGG+TGG + chr3_4:79556317-79556336 None:intergenic 50.0%
! ACTACAACCACCAAAGGTGC+CGG - chr3_4:79556325-79556344 Msa0525910:three_prime_UTR 50.0%
! TTTTCTTCCACCGGCACCTT+TGG + chr3_4:79556338-79556357 None:intergenic 50.0%
!! AAAGGTGCCGGTGGAAGAAA+AGG - chr3_4:79556337-79556356 Msa0525910:three_prime_UTR 50.0%
! GAATTGAAGACCGGCTTTGG+AGG + chr3_4:79556392-79556411 None:intergenic 50.0%
ACCAACGGGGAATTGAAGAC+CGG + chr3_4:79556401-79556420 None:intergenic 50.0%
ACCTAGCTATACGACCAACG+GGG + chr3_4:79556414-79556433 None:intergenic 50.0%
! TATTCTCAGCGTGTTGGCAC+TGG - chr3_4:79556451-79556470 Msa0525910:CDS 50.0%
AGCGAGATATTCGAGAACGG+CGG + chr3_4:79556494-79556513 None:intergenic 50.0%
GGCAGCGAGATATTCGAGAA+CGG + chr3_4:79556497-79556516 None:intergenic 50.0%
CATCATCGTTCCTCACAGCA+AGG + chr3_4:79556675-79556694 None:intergenic 50.0%
GGTGTGACAATTGCTAGTGG+TGG - chr3_4:79556715-79556734 Msa0525910:CDS 50.0%
GCCAAAGAAAACCGTTGCTG+CGG - chr3_4:79556768-79556787 Msa0525910:CDS 50.0%
! TCCGCAGCAACGGTTTTCTT+TGG + chr3_4:79556772-79556791 None:intergenic 50.0%
! TTCGCCGCCTTTTCTTCCAC+CGG + chr3_4:79556347-79556366 None:intergenic 55.0%
GTGGAAGAAAAGGCGGCGAA+AGG - chr3_4:79556347-79556366 Msa0525910:three_prime_UTR 55.0%
! GGGGAATTGAAGACCGGCTT+TGG + chr3_4:79556395-79556414 None:intergenic 55.0%
TCCCCGTTGGTCGTATAGCT+AGG - chr3_4:79556410-79556429 Msa0525910:CDS 55.0%
GGTCGCTATTCTCAGCGTGT+TGG - chr3_4:79556445-79556464 Msa0525910:CDS 55.0%
TCTCGAATATCTCGCTGCCG+AGG - chr3_4:79556498-79556517 Msa0525910:CDS 55.0%
CAGCAAGGCACACGTGTCTA+GGG + chr3_4:79556660-79556679 None:intergenic 55.0%
ACAGCAAGGCACACGTGTCT+AGG + chr3_4:79556661-79556680 None:intergenic 55.0%
! TTCGCCGCCTTTTCTTCCAC+CGG + chr3_4:79556347-79556366 None:intergenic 55.0%
GTGGAAGAAAAGGCGGCGAA+AGG - chr3_4:79556347-79556366 Msa0525910:three_prime_UTR 55.0%
! GGGGAATTGAAGACCGGCTT+TGG + chr3_4:79556395-79556414 None:intergenic 55.0%
TCCCCGTTGGTCGTATAGCT+AGG - chr3_4:79556410-79556429 Msa0525910:CDS 55.0%
GGTCGCTATTCTCAGCGTGT+TGG - chr3_4:79556445-79556464 Msa0525910:CDS 55.0%
TCTCGAATATCTCGCTGCCG+AGG - chr3_4:79556498-79556517 Msa0525910:CDS 55.0%
CAGCAAGGCACACGTGTCTA+GGG + chr3_4:79556660-79556679 None:intergenic 55.0%
ACAGCAAGGCACACGTGTCT+AGG + chr3_4:79556661-79556680 None:intergenic 55.0%
!! ACAACCACCAAAGGTGCCGG+TGG - chr3_4:79556328-79556347 Msa0525910:three_prime_UTR 60.0%
TCTTCCACCGGCACCTTTGG+TGG + chr3_4:79556335-79556354 None:intergenic 60.0%
!! GGTGCCGGTGGAAGAAAAGG+CGG - chr3_4:79556340-79556359 Msa0525910:three_prime_UTR 60.0%
GCCGGTCTTCAATTCCCCGT+TGG - chr3_4:79556397-79556416 Msa0525910:exon 60.0%
AGAACGGCGGCGAGGTAGAT+CGG + chr3_4:79556481-79556500 None:intergenic 60.0%
GATATTCGAGAACGGCGGCG+AGG + chr3_4:79556489-79556508 None:intergenic 60.0%
! GACACGTGTGCCTTGCTGTG+AGG - chr3_4:79556662-79556681 Msa0525910:intron 60.0%
!! ACAACCACCAAAGGTGCCGG+TGG - chr3_4:79556328-79556347 Msa0525910:three_prime_UTR 60.0%
TCTTCCACCGGCACCTTTGG+TGG + chr3_4:79556335-79556354 None:intergenic 60.0%
!! GGTGCCGGTGGAAGAAAAGG+CGG - chr3_4:79556340-79556359 Msa0525910:three_prime_UTR 60.0%
GCCGGTCTTCAATTCCCCGT+TGG - chr3_4:79556397-79556416 Msa0525910:exon 60.0%
AGAACGGCGGCGAGGTAGAT+CGG + chr3_4:79556481-79556500 None:intergenic 60.0%
GATATTCGAGAACGGCGGCG+AGG + chr3_4:79556489-79556508 None:intergenic 60.0%
! GACACGTGTGCCTTGCTGTG+AGG - chr3_4:79556662-79556681 Msa0525910:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 79556204 79557005 79556204 ID=Msa0525910;Name=Msa0525910
chr3_4 mRNA 79556204 79557005 79556204 ID=Msa0525910-mRNA-1;Parent=Msa0525910;Name=Msa0525910-mRNA-1;_AED=0.39;_eAED=0.39;_QI=97|1|1|1|1|1|2|195|141
chr3_4 exon 79556204 79556605 79556204 ID=Msa0525910-mRNA-1:exon:23877;Parent=Msa0525910-mRNA-1
chr3_4 exon 79556690 79557005 79556690 ID=Msa0525910-mRNA-1:exon:23876;Parent=Msa0525910-mRNA-1
chr3_4 five_prime_UTR 79556909 79557005 79556909 ID=Msa0525910-mRNA-1:five_prime_utr;Parent=Msa0525910-mRNA-1
chr3_4 CDS 79556690 79556908 79556690 ID=Msa0525910-mRNA-1:cds;Parent=Msa0525910-mRNA-1
chr3_4 CDS 79556399 79556605 79556399 ID=Msa0525910-mRNA-1:cds;Parent=Msa0525910-mRNA-1
chr3_4 three_prime_UTR 79556204 79556398 79556204 ID=Msa0525910-mRNA-1:three_prime_utr;Parent=Msa0525910-mRNA-1
Gene Sequence

>Msa0525910

ATGGATTCCACCACCACCACAACAACTACAACCACCAAAGGTGCCGGTGGAAGAAAAGGCGGCGAAAGGAAGAAAGCCGTTTCAAAATCCTCCAAAGCCGGTCTTCAATTCCCCGTTGGTCGTATAGCTAGGTTCATGAAGAAAGGTCGCTATTCTCAGCGTGTTGGCACTGGTGCTCCGATCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCCGAGGTTCTTGAATTGGCTGGGAATGCTGCAAGAGATAACAAGAAGAACAGAATTAACCCTAGACACGTGTGCCTTGCTGTGAGGAACGATGATGAATTAGGAAAATTGCTTCAAGGTGTGACAATTGCTAGTGGTGGAGTTTTGCCAAATATTAACCCTGTGTTGTTGCCAAAGAAAACCGTTGCTGCGGAGAAAACTACTAAGAAATAA
Protein sequence

>Msa0525910

MDSTTTTTTTTTKGAGGRKGGERKKAVSKSSKAGLQFPVGRIARFMKKGRYSQRVGTGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVCLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTVAAEKTTKK*