AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165120 MtrunA17_Chr7g0272611 99.281 139 1 0 1 139 1 139 6.15e-98 278
Msa1165120 MtrunA17_Chr2g0327951 82.203 118 21 0 23 140 56 173 8.70e-68 203
Msa1165120 MtrunA17_Chr4g0031041 85.455 110 16 0 23 132 15 124 3.58e-66 197
Msa1165120 MtrunA17_Chr4g0031001 81.897 116 18 1 26 141 24 136 1.04e-64 194
Msa1165120 MtrunA17_Chr4g0031651 85.047 107 16 0 26 132 24 130 2.06e-64 193
Msa1165120 MtrunA17_Chr2g0327931 80.172 116 23 0 26 141 23 138 3.59e-64 192
Msa1165120 MtrunA17_Chr8g0379311 81.034 116 19 1 26 141 24 136 9.64e-64 191
Msa1165120 MtrunA17_Chr4g0035621 75.758 132 30 1 1 132 1 130 1.07e-63 191
Msa1165120 MtrunA17_Chr4g0032301 84.112 107 17 0 26 132 24 130 2.98e-63 190
Msa1165120 MtrunA17_Chr7g0268831 71.970 132 33 1 1 132 1 128 5.45e-62 186
Msa1165120 MtrunA17_Chr7g0273351 73.810 126 31 1 7 132 2 125 7.01e-61 184
Msa1165120 MtrunA17_Chr7g0273331 73.810 126 31 1 7 132 58 181 4.26e-60 184
Msa1165120 MtrunA17_Chr7g0259151 72.727 132 34 2 6 137 3 132 8.04e-60 181
Msa1165120 MtrunA17_Chr2g0319191 77.679 112 25 0 21 132 11 122 3.56e-59 179
Msa1165120 MtrunA17_Chr2g0319181 78.899 109 23 0 24 132 14 122 1.07e-58 178
Msa1165120 MtrunA17_Chr6g0449661 79.661 118 13 3 26 140 85 194 1.61e-58 180
Msa1165120 MtrunA17_Chr3g0119971 78.632 117 14 3 27 140 81 189 1.05e-57 177
Msa1165120 MtrunA17_Chr7g0273341 66.667 123 28 3 10 132 44 153 1.83e-47 150
Msa1165120 MtrunA17_Chr4g0031031 83.784 74 12 0 47 120 10 83 3.32e-39 128
Msa1165120 MtrunA17_Chr1g0148961 54.032 124 55 2 10 132 10 132 3.31e-37 124
Msa1165120 MtrunA17_Chr1g0148951 54.032 124 55 2 10 132 10 132 3.31e-37 124
Msa1165120 MtrunA17_Chr1g0211651 53.782 119 53 2 13 130 10 127 2.54e-36 121
Msa1165120 MtrunA17_Chr1g0184901 57.692 104 42 2 28 130 28 130 1.27e-34 117
Msa1165120 MtrunA17_Chr4g0024701 46.667 105 36 2 26 130 26 110 1.87e-22 85.5
Msa1165120 MtrunA17_Chr1g0183701 60.938 64 25 0 69 132 30 93 1.74e-19 77.8
Msa1165120 MtrunA17_Chr4g0000531 68.889 45 14 0 87 131 5 49 1.68e-14 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165120 AT5G27670.1 78.261 138 30 0 4 141 3 140 8.72e-79 229
Msa1165120 AT5G02560.1 81.356 118 22 0 23 140 21 138 1.74e-66 199
Msa1165120 AT5G59870.1 72.662 139 33 2 7 140 3 141 2.47e-65 196
Msa1165120 AT5G02560.2 67.606 142 22 1 23 140 21 162 1.26e-60 185
Msa1165120 AT1G51060.1 74.167 120 31 0 21 140 11 130 1.74e-60 183
Msa1165120 AT1G08880.1 72.222 126 31 1 10 131 2 127 2.55e-59 180
Msa1165120 AT4G27230.2 72.500 120 33 0 21 140 11 130 8.05e-59 179
Msa1165120 AT4G27230.1 72.500 120 33 0 21 140 11 130 8.05e-59 179
Msa1165120 AT5G54640.1 75.862 116 28 0 21 136 11 126 8.42e-59 178
Msa1165120 AT1G54690.1 70.866 127 33 1 10 132 2 128 9.92e-59 179
Msa1165120 AT3G20670.1 71.901 121 34 0 21 141 11 131 2.13e-58 177
Msa1165120 AT2G38810.1 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa1165120 AT2G38810.4 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa1165120 AT2G38810.3 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa1165120 AT2G38810.2 57.143 112 44 3 23 132 25 134 4.68e-36 121
Msa1165120 AT1G52740.1 56.190 105 44 2 27 130 27 130 1.02e-34 117
Msa1165120 AT3G54560.1 56.481 108 43 3 27 132 29 134 7.43e-34 115
Msa1165120 AT3G54560.2 56.481 108 43 3 27 132 29 134 7.43e-34 115
Msa1165120 AT4G13570.1 45.161 93 47 3 34 124 28 118 1.15e-19 79.0
Msa1165120 AT4G13570.2 40.566 106 59 3 21 124 21 124 1.26e-19 79.0

Find 48 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACACAGGGTTAATATT+TGG 0.220863 7_4:+56967188 None:intergenic
AGGAATGTGAAATTGGAATT+TGG 0.240114 7_4:+56967710 None:intergenic
ATGTAGTGGTTTGTTAAATA+TGG 0.242903 7_4:-56966989 Msa1165120:three_prime_UTR
GTAAAATAGGAATGTGAAAT+TGG 0.292099 7_4:+56967703 None:intergenic
ATGGAGGGAATGAGTAAAAT+AGG 0.297025 7_4:+56967690 None:intergenic
GGGGAATTGAAGACCGGCTT+TGG 0.356697 7_4:+56967541 None:intergenic
GTGAGGAACGATGATGAATT+AGG 0.390738 7_4:-56967254 Msa1165120:CDS
GGTTGTAGTTGTTGTGGTGG+TGG 0.425621 7_4:+56967622 None:intergenic
AACCTAGCTATACGACCAAC+GGG 0.429162 7_4:+56967521 None:intergenic
TCTTCCACCGGCACCTTTGG+TGG 0.442255 7_4:+56967601 None:intergenic
TGTAGTTGTTGTGGTGGTGG+TGG 0.444305 7_4:+56967625 None:intergenic
TATTCTCAGCGTGTTGGCAC+TGG 0.452088 7_4:-56967482 Msa1165120:CDS
TTTAGATCTAACTATTTCGT+TGG 0.454793 7_4:-56967019 Msa1165120:three_prime_UTR
TGTAATGTAGGTTCTTGAAT+TGG 0.463460 7_4:-56967339 Msa1165120:intron
ACAGCAAGGCACACGTGTCT+AGG 0.469171 7_4:+56967275 None:intergenic
ATGTAGGTTCTTGAATTGGC+TGG 0.481956 7_4:-56967335 Msa1165120:intron
TTTATTGAAGTGCATTTACA+TGG 0.483044 7_4:-56967076 Msa1165120:three_prime_UTR
AAAGGTGCCGGTGGAAGAAA+AGG 0.504433 7_4:-56967596 Msa1165120:CDS
TGTAGGTTCTTGAATTGGCT+GGG 0.516295 7_4:-56967334 Msa1165120:intron
AGAACGGCGGCGAGGTAGAT+CGG 0.519256 7_4:+56967455 None:intergenic
TCCCCGTTGGTCGTATAGCT+AGG 0.519588 7_4:-56967523 Msa1165120:CDS
GAATTGAAGACCGGCTTTGG+AGG 0.520441 7_4:+56967544 None:intergenic
GAATTAGGAAAATTGCTTCA+AGG 0.523033 7_4:-56967239 Msa1165120:CDS
CAGCAAGGCACACGTGTCTA+GGG 0.534173 7_4:+56967276 None:intergenic
TTTGGTGGTTGTAGTTGTTG+TGG 0.545704 7_4:+56967616 None:intergenic
GGTGGTTGTAGTTGTTGTGG+TGG 0.550499 7_4:+56967619 None:intergenic
ATAGCTAGGTTCATGAAGAA+AGG 0.556055 7_4:-56967509 Msa1165120:CDS
GTGGAAGAAAAGGCGGCGAA+AGG 0.564273 7_4:-56967586 Msa1165120:CDS
TCGTTGGATGATAAATGTAG+TGG 0.571863 7_4:-56967003 Msa1165120:three_prime_UTR
GTTTCAAAATCCTCCAAAGC+CGG 0.573530 7_4:-56967554 Msa1165120:CDS
ACTACAACCACCAAAGGTGC+CGG 0.576198 7_4:-56967608 Msa1165120:CDS
GCCGGTCTTCAATTCCCCGT+TGG 0.577353 7_4:-56967536 Msa1165120:CDS
GCCAAAGAAAACCGTTGCTG+CGG 0.590680 7_4:-56967165 Msa1165120:CDS
TCTCGAATATCTCGCTGCCG+AGG 0.591297 7_4:-56967435 Msa1165120:intron
GAACCTAGCTATACGACCAA+CGG 0.599597 7_4:+56967520 None:intergenic
GGTCGCTATTCTCAGCGTGT+TGG 0.618289 7_4:-56967488 Msa1165120:CDS
ACCAACGGGGAATTGAAGAC+CGG 0.624424 7_4:+56967535 None:intergenic
ACAACAACTACAACCACCAA+AGG 0.640375 7_4:-56967614 Msa1165120:CDS
CATCATCGTTCCTCACAGCA+AGG 0.645037 7_4:+56967261 None:intergenic
ACAACCACCAAAGGTGCCGG+TGG 0.649704 7_4:-56967605 Msa1165120:CDS
GGTGTGACAATTGCTAGTGG+TGG 0.656244 7_4:-56967218 Msa1165120:CDS
GACACGTGTGCCTTGCTGTG+AGG 0.657788 7_4:-56967271 Msa1165120:CDS
GGCAGCGAGATATTCGAGAA+CGG 0.664119 7_4:+56967439 None:intergenic
CAAGGTGTGACAATTGCTAG+TGG 0.675402 7_4:-56967221 Msa1165120:CDS
GGTGCCGGTGGAAGAAAAGG+CGG 0.678900 7_4:-56967593 Msa1165120:CDS
GATATTCGAGAACGGCGGCG+AGG 0.697780 7_4:+56967447 None:intergenic
AGCGAGATATTCGAGAACGG+CGG 0.709556 7_4:+56967442 None:intergenic
ACCTAGCTATACGACCAACG+GGG 0.792421 7_4:+56967522 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAAAAACAA+TGG - chr7_4:56967029-56967048 Msa1165120:three_prime_UTR 10.0%
!!! TTTGTAATTAATTAATGTTT+TGG - chr7_4:56967311-56967330 Msa1165120:CDS 10.0%
!! AAAAAAAAAAGAAAAAACAA+TGG - chr7_4:56967029-56967048 Msa1165120:three_prime_UTR 10.0%
!!! TTTGTAATTAATTAATGTTT+TGG - chr7_4:56967311-56967330 Msa1165120:CDS 10.0%
!! AAGCGAAATTCATAATTAAT+CGG - chr7_4:56967286-56967305 Msa1165120:CDS 20.0%
!! AAGCGAAATTCATAATTAAT+CGG - chr7_4:56967286-56967305 Msa1165120:CDS 20.0%
! GTAAAATAGGAATGTGAAAT+TGG + chr7_4:56966980-56966999 None:intergenic 25.0%
!!! GAATTTCGCTTTGAAATATA+CGG + chr7_4:56967277-56967296 None:intergenic 25.0%
! TTTATTGAAGTGCATTTACA+TGG - chr7_4:56967604-56967623 Msa1165120:CDS 25.0%
! TTTAGATCTAACTATTTCGT+TGG - chr7_4:56967661-56967680 Msa1165120:five_prime_UTR 25.0%
!!! ATGTAGTGGTTTGTTAAATA+TGG - chr7_4:56967691-56967710 Msa1165120:five_prime_UTR 25.0%
! GTAAAATAGGAATGTGAAAT+TGG + chr7_4:56966980-56966999 None:intergenic 25.0%
!!! GAATTTCGCTTTGAAATATA+CGG + chr7_4:56967277-56967296 None:intergenic 25.0%
! TTTATTGAAGTGCATTTACA+TGG - chr7_4:56967604-56967623 Msa1165120:CDS 25.0%
! TTTAGATCTAACTATTTCGT+TGG - chr7_4:56967661-56967680 Msa1165120:five_prime_UTR 25.0%
!!! ATGTAGTGGTTTGTTAAATA+TGG - chr7_4:56967691-56967710 Msa1165120:five_prime_UTR 25.0%
AGGAATGTGAAATTGGAATT+TGG + chr7_4:56966973-56966992 None:intergenic 30.0%
!!! TTTTTTTTGCGATCCGAAAA+TGG + chr7_4:56967012-56967031 None:intergenic 30.0%
GAAATATACGGAAAATACCT+CGG + chr7_4:56967265-56967284 None:intergenic 30.0%
TTTGGTATGTGATGTAATGT+AGG - chr7_4:56967329-56967348 Msa1165120:CDS 30.0%
TGTAATGTAGGTTCTTGAAT+TGG - chr7_4:56967341-56967360 Msa1165120:intron 30.0%
GAATTAGGAAAATTGCTTCA+AGG - chr7_4:56967441-56967460 Msa1165120:CDS 30.0%
AACAACACAGGGTTAATATT+TGG + chr7_4:56967495-56967514 None:intergenic 30.0%
AGGAATGTGAAATTGGAATT+TGG + chr7_4:56966973-56966992 None:intergenic 30.0%
!!! TTTTTTTTGCGATCCGAAAA+TGG + chr7_4:56967012-56967031 None:intergenic 30.0%
GAAATATACGGAAAATACCT+CGG + chr7_4:56967265-56967284 None:intergenic 30.0%
TTTGGTATGTGATGTAATGT+AGG - chr7_4:56967329-56967348 Msa1165120:CDS 30.0%
TGTAATGTAGGTTCTTGAAT+TGG - chr7_4:56967341-56967360 Msa1165120:intron 30.0%
GAATTAGGAAAATTGCTTCA+AGG - chr7_4:56967441-56967460 Msa1165120:CDS 30.0%
AACAACACAGGGTTAATATT+TGG + chr7_4:56967495-56967514 None:intergenic 30.0%
ATGGAGGGAATGAGTAAAAT+AGG + chr7_4:56966993-56967012 None:intergenic 35.0%
! TTACTCATTCCCTCCATTTT+CGG - chr7_4:56966996-56967015 Msa1165120:three_prime_UTR 35.0%
ATAGCTAGGTTCATGAAGAA+AGG - chr7_4:56967171-56967190 Msa1165120:CDS 35.0%
! TTTTCTTTGGCAACAACACA+GGG + chr7_4:56967506-56967525 None:intergenic 35.0%
TCGTTGGATGATAAATGTAG+TGG - chr7_4:56967677-56967696 Msa1165120:five_prime_UTR 35.0%
GGATGAAGTGTGATAAAGAT+TGG + chr7_4:56966952-56966971 None:intergenic 35.0%
ATGGAGGGAATGAGTAAAAT+AGG + chr7_4:56966993-56967012 None:intergenic 35.0%
! TTACTCATTCCCTCCATTTT+CGG - chr7_4:56966996-56967015 Msa1165120:three_prime_UTR 35.0%
ATAGCTAGGTTCATGAAGAA+AGG - chr7_4:56967171-56967190 Msa1165120:CDS 35.0%
! TTTTCTTTGGCAACAACACA+GGG + chr7_4:56967506-56967525 None:intergenic 35.0%
TCGTTGGATGATAAATGTAG+TGG - chr7_4:56967677-56967696 Msa1165120:five_prime_UTR 35.0%
! TTTTGCGATCCGAAAATGGA+GGG + chr7_4:56967008-56967027 None:intergenic 40.0%
! TTTTTGCGATCCGAAAATGG+AGG + chr7_4:56967009-56967028 None:intergenic 40.0%
! TTTGGTGGTTGTAGTTGTTG+TGG + chr7_4:56967067-56967086 None:intergenic 40.0%
ACAACAACTACAACCACCAA+AGG - chr7_4:56967066-56967085 Msa1165120:three_prime_UTR 40.0%
!!! GGCTTTGGAGGATTTTGAAA+CGG + chr7_4:56967127-56967146 None:intergenic 40.0%
GTTTCAAAATCCTCCAAAGC+CGG - chr7_4:56967126-56967145 Msa1165120:exon 40.0%
ATGTAGGTTCTTGAATTGGC+TGG - chr7_4:56967345-56967364 Msa1165120:intron 40.0%
TGTAGGTTCTTGAATTGGCT+GGG - chr7_4:56967346-56967365 Msa1165120:intron 40.0%
GTGAGGAACGATGATGAATT+AGG - chr7_4:56967426-56967445 Msa1165120:intron 40.0%
! GTTTTCTTTGGCAACAACAC+AGG + chr7_4:56967507-56967526 None:intergenic 40.0%
! TTTTGCGATCCGAAAATGGA+GGG + chr7_4:56967008-56967027 None:intergenic 40.0%
! TTTTTGCGATCCGAAAATGG+AGG + chr7_4:56967009-56967028 None:intergenic 40.0%
! TTTGGTGGTTGTAGTTGTTG+TGG + chr7_4:56967067-56967086 None:intergenic 40.0%
ACAACAACTACAACCACCAA+AGG - chr7_4:56967066-56967085 Msa1165120:three_prime_UTR 40.0%
!!! GGCTTTGGAGGATTTTGAAA+CGG + chr7_4:56967127-56967146 None:intergenic 40.0%
GTTTCAAAATCCTCCAAAGC+CGG - chr7_4:56967126-56967145 Msa1165120:exon 40.0%
ATGTAGGTTCTTGAATTGGC+TGG - chr7_4:56967345-56967364 Msa1165120:intron 40.0%
TGTAGGTTCTTGAATTGGCT+GGG - chr7_4:56967346-56967365 Msa1165120:intron 40.0%
GTGAGGAACGATGATGAATT+AGG - chr7_4:56967426-56967445 Msa1165120:intron 40.0%
! GTTTTCTTTGGCAACAACAC+AGG + chr7_4:56967507-56967526 None:intergenic 40.0%
AACCTAGCTATACGACCAAC+GGG + chr7_4:56967162-56967181 None:intergenic 45.0%
GAACCTAGCTATACGACCAA+CGG + chr7_4:56967163-56967182 None:intergenic 45.0%
CAAGGTGTGACAATTGCTAG+TGG - chr7_4:56967459-56967478 Msa1165120:CDS 45.0%
! AGTAGTTTTCTCCGCAGCAA+CGG + chr7_4:56967529-56967548 None:intergenic 45.0%
AACCTAGCTATACGACCAAC+GGG + chr7_4:56967162-56967181 None:intergenic 45.0%
GAACCTAGCTATACGACCAA+CGG + chr7_4:56967163-56967182 None:intergenic 45.0%
CAAGGTGTGACAATTGCTAG+TGG - chr7_4:56967459-56967478 Msa1165120:CDS 45.0%
! AGTAGTTTTCTCCGCAGCAA+CGG + chr7_4:56967529-56967548 None:intergenic 45.0%
!! TGTAGTTGTTGTGGTGGTGG+TGG + chr7_4:56967058-56967077 None:intergenic 50.0%
GGTTGTAGTTGTTGTGGTGG+TGG + chr7_4:56967061-56967080 None:intergenic 50.0%
GGTGGTTGTAGTTGTTGTGG+TGG + chr7_4:56967064-56967083 None:intergenic 50.0%
! ACTACAACCACCAAAGGTGC+CGG - chr7_4:56967072-56967091 Msa1165120:three_prime_UTR 50.0%
! TTTTCTTCCACCGGCACCTT+TGG + chr7_4:56967085-56967104 None:intergenic 50.0%
!! AAAGGTGCCGGTGGAAGAAA+AGG - chr7_4:56967084-56967103 Msa1165120:three_prime_UTR 50.0%
! GAATTGAAGACCGGCTTTGG+AGG + chr7_4:56967139-56967158 None:intergenic 50.0%
ACCAACGGGGAATTGAAGAC+CGG + chr7_4:56967148-56967167 None:intergenic 50.0%
ACCTAGCTATACGACCAACG+GGG + chr7_4:56967161-56967180 None:intergenic 50.0%
! TATTCTCAGCGTGTTGGCAC+TGG - chr7_4:56967198-56967217 Msa1165120:CDS 50.0%
AGCGAGATATTCGAGAACGG+CGG + chr7_4:56967241-56967260 None:intergenic 50.0%
GGCAGCGAGATATTCGAGAA+CGG + chr7_4:56967244-56967263 None:intergenic 50.0%
CATCATCGTTCCTCACAGCA+AGG + chr7_4:56967422-56967441 None:intergenic 50.0%
GGTGTGACAATTGCTAGTGG+TGG - chr7_4:56967462-56967481 Msa1165120:CDS 50.0%
GCCAAAGAAAACCGTTGCTG+CGG - chr7_4:56967515-56967534 Msa1165120:CDS 50.0%
! TCCGCAGCAACGGTTTTCTT+TGG + chr7_4:56967519-56967538 None:intergenic 50.0%
!! TGTAGTTGTTGTGGTGGTGG+TGG + chr7_4:56967058-56967077 None:intergenic 50.0%
GGTTGTAGTTGTTGTGGTGG+TGG + chr7_4:56967061-56967080 None:intergenic 50.0%
GGTGGTTGTAGTTGTTGTGG+TGG + chr7_4:56967064-56967083 None:intergenic 50.0%
! ACTACAACCACCAAAGGTGC+CGG - chr7_4:56967072-56967091 Msa1165120:three_prime_UTR 50.0%
! TTTTCTTCCACCGGCACCTT+TGG + chr7_4:56967085-56967104 None:intergenic 50.0%
!! AAAGGTGCCGGTGGAAGAAA+AGG - chr7_4:56967084-56967103 Msa1165120:three_prime_UTR 50.0%
! GAATTGAAGACCGGCTTTGG+AGG + chr7_4:56967139-56967158 None:intergenic 50.0%
ACCAACGGGGAATTGAAGAC+CGG + chr7_4:56967148-56967167 None:intergenic 50.0%
ACCTAGCTATACGACCAACG+GGG + chr7_4:56967161-56967180 None:intergenic 50.0%
! TATTCTCAGCGTGTTGGCAC+TGG - chr7_4:56967198-56967217 Msa1165120:CDS 50.0%
AGCGAGATATTCGAGAACGG+CGG + chr7_4:56967241-56967260 None:intergenic 50.0%
GGCAGCGAGATATTCGAGAA+CGG + chr7_4:56967244-56967263 None:intergenic 50.0%
CATCATCGTTCCTCACAGCA+AGG + chr7_4:56967422-56967441 None:intergenic 50.0%
GGTGTGACAATTGCTAGTGG+TGG - chr7_4:56967462-56967481 Msa1165120:CDS 50.0%
GCCAAAGAAAACCGTTGCTG+CGG - chr7_4:56967515-56967534 Msa1165120:CDS 50.0%
! TCCGCAGCAACGGTTTTCTT+TGG + chr7_4:56967519-56967538 None:intergenic 50.0%
! TTCGCCGCCTTTTCTTCCAC+CGG + chr7_4:56967094-56967113 None:intergenic 55.0%
GTGGAAGAAAAGGCGGCGAA+AGG - chr7_4:56967094-56967113 Msa1165120:three_prime_UTR 55.0%
! GGGGAATTGAAGACCGGCTT+TGG + chr7_4:56967142-56967161 None:intergenic 55.0%
TCCCCGTTGGTCGTATAGCT+AGG - chr7_4:56967157-56967176 Msa1165120:CDS 55.0%
GGTCGCTATTCTCAGCGTGT+TGG - chr7_4:56967192-56967211 Msa1165120:CDS 55.0%
TCTCGAATATCTCGCTGCCG+AGG - chr7_4:56967245-56967264 Msa1165120:CDS 55.0%
CAGCAAGGCACACGTGTCTA+GGG + chr7_4:56967407-56967426 None:intergenic 55.0%
ACAGCAAGGCACACGTGTCT+AGG + chr7_4:56967408-56967427 None:intergenic 55.0%
! TTCGCCGCCTTTTCTTCCAC+CGG + chr7_4:56967094-56967113 None:intergenic 55.0%
GTGGAAGAAAAGGCGGCGAA+AGG - chr7_4:56967094-56967113 Msa1165120:three_prime_UTR 55.0%
! GGGGAATTGAAGACCGGCTT+TGG + chr7_4:56967142-56967161 None:intergenic 55.0%
TCCCCGTTGGTCGTATAGCT+AGG - chr7_4:56967157-56967176 Msa1165120:CDS 55.0%
GGTCGCTATTCTCAGCGTGT+TGG - chr7_4:56967192-56967211 Msa1165120:CDS 55.0%
TCTCGAATATCTCGCTGCCG+AGG - chr7_4:56967245-56967264 Msa1165120:CDS 55.0%
CAGCAAGGCACACGTGTCTA+GGG + chr7_4:56967407-56967426 None:intergenic 55.0%
ACAGCAAGGCACACGTGTCT+AGG + chr7_4:56967408-56967427 None:intergenic 55.0%
!! ACAACCACCAAAGGTGCCGG+TGG - chr7_4:56967075-56967094 Msa1165120:three_prime_UTR 60.0%
TCTTCCACCGGCACCTTTGG+TGG + chr7_4:56967082-56967101 None:intergenic 60.0%
!! GGTGCCGGTGGAAGAAAAGG+CGG - chr7_4:56967087-56967106 Msa1165120:three_prime_UTR 60.0%
GCCGGTCTTCAATTCCCCGT+TGG - chr7_4:56967144-56967163 Msa1165120:exon 60.0%
AGAACGGCGGCGAGGTAGAT+CGG + chr7_4:56967228-56967247 None:intergenic 60.0%
GATATTCGAGAACGGCGGCG+AGG + chr7_4:56967236-56967255 None:intergenic 60.0%
! GACACGTGTGCCTTGCTGTG+AGG - chr7_4:56967409-56967428 Msa1165120:intron 60.0%
!! ACAACCACCAAAGGTGCCGG+TGG - chr7_4:56967075-56967094 Msa1165120:three_prime_UTR 60.0%
TCTTCCACCGGCACCTTTGG+TGG + chr7_4:56967082-56967101 None:intergenic 60.0%
!! GGTGCCGGTGGAAGAAAAGG+CGG - chr7_4:56967087-56967106 Msa1165120:three_prime_UTR 60.0%
GCCGGTCTTCAATTCCCCGT+TGG - chr7_4:56967144-56967163 Msa1165120:exon 60.0%
AGAACGGCGGCGAGGTAGAT+CGG + chr7_4:56967228-56967247 None:intergenic 60.0%
GATATTCGAGAACGGCGGCG+AGG + chr7_4:56967236-56967255 None:intergenic 60.0%
! GACACGTGTGCCTTGCTGTG+AGG - chr7_4:56967409-56967428 Msa1165120:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 56966950 56967752 56966950 ID=Msa1165120;Name=Msa1165120
chr7_4 mRNA 56966950 56967752 56966950 ID=Msa1165120-mRNA-1;Parent=Msa1165120;Name=Msa1165120-mRNA-1;_AED=0.39;_eAED=0.39;_QI=98|1|1|1|1|1|2|195|141
chr7_4 exon 56966950 56967351 56966950 ID=Msa1165120-mRNA-1:exon:17094;Parent=Msa1165120-mRNA-1
chr7_4 exon 56967436 56967752 56967436 ID=Msa1165120-mRNA-1:exon:17093;Parent=Msa1165120-mRNA-1
chr7_4 five_prime_UTR 56967655 56967752 56967655 ID=Msa1165120-mRNA-1:five_prime_utr;Parent=Msa1165120-mRNA-1
chr7_4 CDS 56967436 56967654 56967436 ID=Msa1165120-mRNA-1:cds;Parent=Msa1165120-mRNA-1
chr7_4 CDS 56967145 56967351 56967145 ID=Msa1165120-mRNA-1:cds;Parent=Msa1165120-mRNA-1
chr7_4 three_prime_UTR 56966950 56967144 56966950 ID=Msa1165120-mRNA-1:three_prime_utr;Parent=Msa1165120-mRNA-1
Gene Sequence

>Msa1165120

ATGGATTCCACCACCACCACAACAACTACAACCACCAAAGGTGCCGGTGGAAGAAAAGGCGGCGAAAGGAAGAAAGCCGTTTCAAAATCCTCCAAAGCCGGTCTTCAATTCCCCGTTGGTCGTATAGCTAGGTTCATGAAGAAAGGTCGCTATTCTCAGCGTGTTGGCACTGGTGCTCCGATCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCCGAGGTTCTTGAATTGGCTGGGAATGCTGCAAGAGATAACAAGAAGAACAGAATTAACCCTAGACACGTGTGCCTTGCTGTGAGGAACGATGATGAATTAGGAAAATTGCTTCAAGGTGTGACAATTGCTAGTGGTGGAGTTTTGCCAAATATTAACCCTGTGTTGTTGCCAAAGAAAACCGTTGCTGCGGAGAAAACTACTAAGAAATAA
Protein sequence

>Msa1165120

MDSTTTTTTTTTKGAGGRKGGERKKAVSKSSKAGLQFPVGRIARFMKKGRYSQRVGTGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVCLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTVAAEKTTKK*