AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526330 MtrunA17_Chr8g0387541 99.688 321 1 0 1 321 1 321 0.0 662
Msa0526330 MtrunA17_Chr1g0190121 79.114 316 64 2 1 315 1 315 0.0 540
Msa0526330 MtrunA17_Chr7g0274931 78.165 316 67 2 1 315 1 315 0.0 533
Msa0526330 MtrunA17_Chr5g0436061 78.431 306 66 0 1 306 17 322 0.0 523
Msa0526330 MtrunA17_Chr1g0186811 74.603 315 78 2 1 314 1 314 0.0 511
Msa0526330 MtrunA17_Chr1g0167751 75.161 310 75 2 1 309 1 309 2.20e-180 501
Msa0526330 MtrunA17_Chr7g0272371 72.500 320 79 3 1 318 5 317 9.03e-177 491
Msa0526330 MtrunA17_Chr8g0334361 77.163 289 65 1 6 294 4 291 5.01e-174 484
Msa0526330 MtrunA17_Chr8g0378521 46.128 297 150 3 6 301 9 296 2.31e-96 287
Msa0526330 MtrunA17_Chr7g0268381 47.826 276 142 2 27 301 27 301 1.55e-95 285
Msa0526330 MtrunA17_Chr5g0415261 48.679 265 134 2 27 290 20 283 1.23e-93 280
Msa0526330 MtrunA17_Chr8g0364041 48.302 265 135 2 27 290 20 283 1.43e-93 280
Msa0526330 MtrunA17_Chr5g0445011 44.948 287 154 2 27 312 17 300 4.54e-93 279
Msa0526330 MtrunA17_Chr1g0165341 41.158 311 168 6 6 314 3 300 4.63e-90 271
Msa0526330 MtrunA17_Chr2g0322121 50.000 272 122 5 23 280 660 931 7.55e-82 267
Msa0526330 MtrunA17_Chr4g0025471 45.603 307 151 6 3 293 643 949 3.36e-80 262
Msa0526330 MtrunA17_Chr3g0097231 42.160 287 155 5 3 283 168 449 2.63e-70 226
Msa0526330 MtrunA17_Chr2g0330311 41.404 285 154 7 3 280 195 473 1.09e-65 214
Msa0526330 MtrunA17_Chr2g0330331 40.484 289 160 7 2 283 32 315 3.41e-61 198
Msa0526330 MtrunA17_Chr1g0196211 47.222 180 85 5 109 279 2 180 9.69e-49 163
Msa0526330 MtrunA17_Chr8g0369981 31.111 315 152 10 34 283 100 414 6.37e-36 134
Msa0526330 MtrunA17_Chr1g0196221 46.296 108 50 2 9 108 528 635 3.44e-24 103
Msa0526330 MtrunA17_Chr2g0330011 36.975 119 65 4 32 141 232 349 3.67e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526330 AT1G64040.1 85.266 319 47 0 1 319 1 319 0.0 589
Msa0526330 AT4G11240.1 83.438 320 53 0 1 320 1 320 0.0 585
Msa0526330 AT2G29400.1 81.457 302 53 2 1 300 15 315 0.0 526
Msa0526330 AT2G39840.1 79.070 301 63 0 1 301 14 314 0.0 516
Msa0526330 AT5G59160.3 78.146 302 65 1 1 301 9 310 0.0 509
Msa0526330 AT5G59160.2 78.146 302 65 1 1 301 9 310 0.0 509
Msa0526330 AT5G59160.1 78.146 302 65 1 1 301 9 310 0.0 509
Msa0526330 AT3G46820.1 77.152 302 68 1 1 301 9 310 0.0 503
Msa0526330 AT5G43380.1 70.717 321 93 1 1 321 1 320 1.03e-175 489
Msa0526330 AT5G43380.2 71.519 316 89 1 1 316 1 315 4.06e-175 488
Msa0526330 AT5G43380.3 70.717 321 93 1 1 321 1 320 5.50e-175 488
Msa0526330 AT5G27840.1 75.338 296 70 1 1 296 9 301 6.51e-174 484
Msa0526330 AT5G27840.4 73.786 309 73 2 1 304 9 314 7.38e-174 485
Msa0526330 AT5G27840.2 75.338 296 70 1 1 296 9 301 1.43e-173 484
Msa0526330 AT5G27840.3 75.338 296 70 1 1 296 9 301 1.43e-173 484
Msa0526330 AT3G05580.1 76.014 296 68 1 1 296 9 301 3.67e-173 483
Msa0526330 AT3G05580.2 75.304 247 58 1 1 247 9 252 8.32e-141 398
Msa0526330 AT2G42500.1 47.138 297 147 3 6 301 14 301 5.31e-98 292
Msa0526330 AT3G58500.1 46.465 297 149 3 6 301 14 301 1.04e-96 288
Msa0526330 AT5G55260.1 46.739 276 146 1 27 301 17 292 7.56e-95 283
Msa0526330 AT1G10430.2 46.503 286 143 3 6 290 7 283 1.77e-94 283
Msa0526330 AT1G10430.1 46.503 286 143 3 6 290 7 283 1.77e-94 283
Msa0526330 AT1G59830.1 46.853 286 142 3 6 290 7 283 4.55e-94 281
Msa0526330 AT1G69960.1 47.547 265 137 2 27 290 21 284 4.28e-93 279
Msa0526330 AT4G26720.1 43.310 284 160 1 19 301 9 292 2.10e-92 277
Msa0526330 AT1G50370.1 40.453 309 172 5 8 314 2 300 3.59e-90 271
Msa0526330 AT3G19980.1 40.453 309 172 5 8 314 2 300 5.68e-90 271
Msa0526330 AT5G55260.2 40.694 317 146 2 27 301 17 333 1.73e-86 264
Msa0526330 AT1G59830.2 48.400 250 119 3 6 254 7 247 1.95e-83 253
Msa0526330 AT2G27210.2 50.000 272 122 5 23 280 666 937 1.82e-82 269
Msa0526330 AT2G27210.1 50.000 272 122 5 23 280 671 942 1.93e-82 269
Msa0526330 AT1G08420.2 49.632 272 123 5 23 280 677 948 1.39e-81 266
Msa0526330 AT1G08420.1 49.632 272 123 5 23 280 682 953 1.47e-81 266
Msa0526330 AT4G03080.1 45.364 302 147 7 9 293 530 830 1.19e-80 262
Msa0526330 AT2G42500.2 49.327 223 111 2 80 301 33 254 1.60e-76 235
Msa0526330 AT1G03445.1 42.857 301 149 8 3 282 446 744 8.69e-73 239
Msa0526330 AT1G03445.2 42.857 301 149 8 3 282 446 744 9.25e-73 239
Msa0526330 AT2G42810.1 40.702 285 157 5 2 280 170 448 9.04e-67 217
Msa0526330 AT2G42810.5 40.702 285 157 5 2 280 170 448 9.04e-67 217
Msa0526330 AT2G42810.4 40.702 285 157 5 2 280 170 448 9.04e-67 217
Msa0526330 AT2G42810.2 40.702 285 157 5 2 280 224 502 2.49e-66 217
Msa0526330 AT2G42810.3 40.702 285 157 5 2 280 223 501 2.62e-66 217
Msa0526330 AT2G42500.4 45.238 168 80 3 6 169 14 173 1.86e-44 150
Msa0526330 AT2G42500.5 44.571 175 83 4 6 176 14 178 2.63e-44 150
Msa0526330 AT2G42500.3 46.250 160 74 3 6 161 14 165 1.07e-43 148
Msa0526330 AT5G63870.1 30.303 264 134 7 56 269 79 342 5.20e-31 121
Msa0526330 AT5G63870.2 30.303 264 134 7 56 269 79 342 5.20e-31 121
Msa0526330 AT5G63870.3 30.000 220 119 5 56 240 79 298 2.30e-25 103
Msa0526330 AT1G48120.1 28.477 302 144 8 34 269 630 925 5.83e-25 106
Msa0526330 AT5G10900.2 29.885 261 143 10 56 278 225 483 1.14e-20 93.2
Msa0526330 AT5G10900.3 29.885 261 143 10 56 278 225 483 1.39e-20 92.8
Msa0526330 AT5G10900.1 29.885 261 143 10 56 278 225 483 1.46e-20 92.8

Find 114 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCCATCAATCGTATTTA+TGG 0.118761 3_4:+80175242 Msa0526330:CDS
TCATTCTCCACATAGGTTAA+AGG 0.225911 3_4:+80177540 Msa0526330:three_prime_UTR
GAAGCAAATTACTTATTTCT+TGG 0.231778 3_4:+80175110 Msa0526330:CDS
TCAAACTCACCACAGTAATT+TGG 0.239332 3_4:-80176273 None:intergenic
ACCTTATGAGGTGGAGTTCC+AGG 0.245870 3_4:-80176405 None:intergenic
CGAGGTGTTTCATTTACATT+TGG 0.254753 3_4:+80175521 Msa0526330:CDS
TATCGGAAGACTTCAGTATC+TGG 0.265509 3_4:-80176344 None:intergenic
TCCAACTTTGCCCTTCTTAT+CGG 0.312310 3_4:-80176361 None:intergenic
CCATGATCTGGCACATCAAT+AGG 0.319380 3_4:-80175434 None:intergenic
AGAAATAAGTAATTTGCTTC+AGG 0.320791 3_4:-80175107 None:intergenic
CATAACAAGATTACCCCTTA+TGG 0.333035 3_4:-80177778 None:intergenic
GAGGTGTTTCATTTACATTT+GGG 0.340319 3_4:+80175522 Msa0526330:CDS
ATTGAAGATGTATCATCAAC+TGG 0.347192 3_4:+80173533 Msa0526330:five_prime_UTR
TGATTGCTTTAATTGTTTAC+CGG 0.357293 3_4:+80175319 Msa0526330:CDS
GCTTCAAGTTCAAGAAGATT+AGG 0.359782 3_4:-80173860 None:intergenic
AAGAAGGGCAAAGTTGGATT+TGG 0.364950 3_4:+80176366 Msa0526330:CDS
CGTATTCGAACAGCCTTAAA+AGG 0.372745 3_4:-80175073 None:intergenic
AGGAGAACTTCTTTCTTCTC+AGG 0.373373 3_4:+80175204 Msa0526330:CDS
TGGAAATTCAAACTCCATAA+GGG 0.384009 3_4:+80177764 Msa0526330:three_prime_UTR
CATCCCTCGAGATCTTTATC+AGG 0.394159 3_4:-80175485 None:intergenic
GCCTTCTCTGCGACCTTCTG+TGG 0.394394 3_4:+80175456 Msa0526330:CDS
GCCTTAAAAGGTCTGAAAAC+TGG 0.396799 3_4:-80175061 None:intergenic
ATGGAAATTCAAACTCCATA+AGG 0.400234 3_4:+80177763 Msa0526330:three_prime_UTR
GAAAGAAAGAAACAAGGATA+GGG 0.426060 3_4:-80177695 None:intergenic
CATAAGGGGTAATCTTGTTA+TGG 0.434936 3_4:+80177779 Msa0526330:three_prime_UTR
GATTGATGGAGGCGCATTCA+TGG 0.439246 3_4:-80175232 None:intergenic
GAAACCATAAATACGATTGA+TGG 0.442568 3_4:-80175246 None:intergenic
TACAGTCACCAGCTTACGTT+TGG 0.445882 3_4:-80176241 None:intergenic
GATGTATCATCAACTGGGCT+AGG 0.451995 3_4:+80173539 Msa0526330:five_prime_UTR
ACCTGGAACTCCACCTCATA+AGG 0.452558 3_4:+80176404 Msa0526330:CDS
GAAGCTCCTATCAAAATTTG+TGG 0.455039 3_4:+80173878 Msa0526330:CDS
TATATTTCTGCTACCTGGCA+TGG 0.457357 3_4:+80177565 Msa0526330:three_prime_UTR
CCTATTGATGTGCCAGATCA+TGG 0.458791 3_4:+80175434 Msa0526330:CDS
ACTCGAGCTATGTAACTATA+AGG 0.460438 3_4:+80177495 Msa0526330:three_prime_UTR
AAAAGGAATTAAATAAAGTA+AGG 0.468373 3_4:+80173474 None:intergenic
GGAGGTATAATGTTCGTCTC+TGG 0.469205 3_4:+80175285 Msa0526330:CDS
TTGTCGTTGCAAAGGAAGGC+AGG 0.472638 3_4:-80177617 None:intergenic
AGAAAGAAAGAAACAAGGAT+AGG 0.472918 3_4:-80177696 None:intergenic
CCCACAGAAGGTCGCAGAGA+AGG 0.474160 3_4:-80175457 None:intergenic
ACTGAAGTCTTCCGATAAGA+AGG 0.476810 3_4:+80176350 Msa0526330:CDS
AGAAGATCCTTTGCATGCAT+GGG 0.477596 3_4:+80175360 Msa0526330:CDS
TCGCAGAGAAGGCCATGATC+TGG 0.483085 3_4:-80175446 None:intergenic
CATGATCTGGCACATCAATA+GGG 0.484326 3_4:-80175433 None:intergenic
TCCGATAAGAAGGGCAAAGT+TGG 0.484368 3_4:+80176360 Msa0526330:CDS
ACACCGAGTGTGACAGCCTA+TGG 0.484463 3_4:+80177839 Msa0526330:three_prime_UTR
GAGAGAAACGCGAAACGGAA+AGG 0.491445 3_4:-80173646 None:intergenic
GGAGAACTTCTTTCTTCTCA+GGG 0.491751 3_4:+80175205 Msa0526330:CDS
AATAAGTAATTTGCTTCAGG+TGG 0.494184 3_4:-80175104 None:intergenic
GCGTCCCAGGTTGTAGAAGA+TGG 0.498692 3_4:+80176204 Msa0526330:intron
AAAGAGAGAGAAACGCGAAA+CGG 0.499054 3_4:-80173651 None:intergenic
GAGAAGATCCTTTGCATGCA+TGG 0.499556 3_4:+80175359 Msa0526330:CDS
TGATAAAGATCTCGAGGGAT+GGG 0.500185 3_4:+80175487 Msa0526330:CDS
TAACTATAAGGTCAGTGAGC+TGG 0.504000 3_4:+80177507 Msa0526330:three_prime_UTR
AGGTTTATATTTCTGCTACC+TGG 0.505060 3_4:+80177560 Msa0526330:three_prime_UTR
AACGACAACTGAAGACAGTA+TGG 0.510813 3_4:+80177632 Msa0526330:three_prime_UTR
TCAGCTTTGTACTTCTGCTA+AGG 0.513143 3_4:+80173820 Msa0526330:CDS
TCTCTTGGAGATGGATGATA+CGG 0.513600 3_4:+80173712 Msa0526330:exon
TTCTTATTATTGATGTACAA+TGG 0.516811 3_4:+80177744 Msa0526330:three_prime_UTR
ATGGCTTTCATTCTCCACAT+AGG 0.527219 3_4:+80177533 Msa0526330:three_prime_UTR
CCTTCTCTGCGACCTTCTGT+GGG 0.527902 3_4:+80175457 Msa0526330:CDS
GTCTTCAGTTGTCGTTGCAA+AGG 0.528795 3_4:-80177625 None:intergenic
CTGATAAAGATCTCGAGGGA+TGG 0.534435 3_4:+80175486 Msa0526330:CDS
AAGGTCAGTGAGCTGGATGA+TGG 0.534613 3_4:+80177514 Msa0526330:three_prime_UTR
TGTGAATCATCAACCATGCC+AGG 0.545199 3_4:-80177578 None:intergenic
TTTAAGGCTGTTCGAATACG+GGG 0.546220 3_4:+80175076 Msa0526330:CDS
ACAACTGAAGACAGTATGGC+AGG 0.547593 3_4:+80177636 Msa0526330:three_prime_UTR
ATATAAACCTTTAACCTATG+TGG 0.548666 3_4:-80177547 None:intergenic
TCAGTTGTCGTTGCAAAGGA+AGG 0.548844 3_4:-80177621 None:intergenic
ATTTACATTTGGGGCTGACA+AGG 0.548915 3_4:+80175532 Msa0526330:CDS
AAAGGTCTGAAAACTGGCCA+TGG 0.549539 3_4:-80175055 None:intergenic
TCTGATATGTAGAGCTCACC+AGG 0.551295 3_4:+80175586 Msa0526330:CDS
CTCAGTCGTTTACAAGAAGG+AGG 0.558503 3_4:+80173573 Msa0526330:five_prime_UTR
AGGTGTTTCATTTACATTTG+GGG 0.560742 3_4:+80175523 Msa0526330:CDS
GTTTACAAGAAGGAGGGAAA+CGG 0.565321 3_4:+80173580 Msa0526330:five_prime_UTR
TTGTTTGCAGGAGATGTCCA+TGG 0.568088 3_4:+80175038 Msa0526330:intron
TCATCTACTAGAGCAGCAAC+CGG 0.568940 3_4:-80175338 None:intergenic
TCGCCATAGGCTGTCACACT+CGG 0.569823 3_4:-80177842 None:intergenic
TGCATATAAAATCAAATACA+AGG 0.570871 3_4:+80175184 Msa0526330:CDS
GATAAAGATCTCGAGGGATG+GGG 0.570941 3_4:+80175488 Msa0526330:CDS
ATGTATCATCAACTGGGCTA+GGG 0.572489 3_4:+80173540 Msa0526330:five_prime_UTR
AAACTCAGTCGTTTACAAGA+AGG 0.574886 3_4:+80173570 Msa0526330:five_prime_UTR
TGTGGTGAGTTTGATAATGC+CGG 0.578788 3_4:+80176282 Msa0526330:CDS
CTTGGAGATTATGTTGATCG+TGG 0.584311 3_4:+80175128 Msa0526330:CDS
AAAGAAAGAAACAAGGATAG+GGG 0.585866 3_4:-80177694 None:intergenic
ATCCACACTCATCATAGCAC+CGG 0.591401 3_4:-80176301 None:intergenic
GGCAATAACTCATCAAGACC+TGG 0.595098 3_4:+80176387 Msa0526330:CDS
TATCAGGATCAGCCCACAGA+AGG 0.599205 3_4:-80175469 None:intergenic
CTGAAGTCTTCCGATAAGAA+GGG 0.604771 3_4:+80176351 Msa0526330:CDS
TGATCCTGATAAAGATCTCG+AGG 0.605585 3_4:+80175481 Msa0526330:CDS
ATAAGTAATTTGCTTCAGGT+GGG 0.616465 3_4:-80175103 None:intergenic
AAGACAGTATGGCAGGGACA+TGG 0.622806 3_4:+80177643 Msa0526330:three_prime_UTR
GAAGATCCTTTGCATGCATG+GGG 0.624730 3_4:+80175361 Msa0526330:CDS
TGTGACAGCCTATGGCGAGT+AGG 0.625556 3_4:+80177847 Msa0526330:three_prime_UTR
TACAAGAAGGAGGGAAACGG+CGG 0.626522 3_4:+80173583 Msa0526330:five_prime_UTR
GGAAATTCAAACTCCATAAG+GGG 0.629390 3_4:+80177765 Msa0526330:three_prime_UTR
TTGAAGATGTATCATCAACT+GGG 0.634964 3_4:+80173534 Msa0526330:five_prime_UTR
AAGAAAGAAACAAGGATAGG+GGG 0.636253 3_4:-80177693 None:intergenic
AAGCTTGTATCAGCGAAGAA+CGG 0.636419 3_4:+80173755 Msa0526330:CDS
CAACTGAAGACAGTATGGCA+GGG 0.642387 3_4:+80177637 Msa0526330:three_prime_UTR
GTTTCTACGATGAGTGCAAG+AGG 0.643121 3_4:+80175264 Msa0526330:CDS
TGTCGTTGCAAAGGAAGGCA+GGG 0.643824 3_4:-80177616 None:intergenic
AAGCTGACGAATATCAGCCT+CGG 0.647938 3_4:-80173804 None:intergenic
ACCATAAATACGATTGATGG+AGG 0.650130 3_4:-80175243 None:intergenic
AAATAAGAAAGAAAGAAACA+AGG 0.650216 3_4:-80177701 None:intergenic
TCAGTCGTTTACAAGAAGGA+GGG 0.661164 3_4:+80173574 Msa0526330:five_prime_UTR
GAGAACTTCTTTCTTCTCAG+GGG 0.674269 3_4:+80175206 Msa0526330:CDS
TGCCGGTGCTATGATGAGTG+TGG 0.686901 3_4:+80176299 Msa0526330:CDS
TTAAGGCTGTTCGAATACGG+GGG 0.692495 3_4:+80175077 Msa0526330:CDS
TCTACGATGAGTGCAAGAGG+AGG 0.698302 3_4:+80175267 Msa0526330:CDS
GGATGGGGAGAAAATGATCG+AGG 0.699695 3_4:+80175503 Msa0526330:CDS
TTCTCTGCACCAAATTACTG+TGG 0.705308 3_4:+80176264 Msa0526330:CDS
GATCCTGATAAAGATCTCGA+GGG 0.709098 3_4:+80175482 Msa0526330:CDS
AAGATCCTTTGCATGCATGG+GGG 0.732102 3_4:+80175362 Msa0526330:CDS
GAAGCAAGTTCATCTTACCG+AGG 0.743441 3_4:+80173787 Msa0526330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTAATTTTTAAT+TGG + chr3_4:80174041-80174060 Msa0526330:intron 0.0%
!!! TTTAATTTTAATTTTTAATT+GGG + chr3_4:80174042-80174061 Msa0526330:intron 0.0%
!!! AACTCATAAATTTTAATTTT+AGG + chr3_4:80174648-80174667 Msa0526330:intron 10.0%
!!! ACTCATAAATTTTAATTTTA+GGG + chr3_4:80174649-80174668 Msa0526330:intron 10.0%
!! TTAAAAAGAAAAAAAAAAAG+AGG - chr3_4:80176045-80176064 None:intergenic 10.0%
!!! TTTTTTTTTCTTTTTAATTG+CGG + chr3_4:80176048-80176067 Msa0526330:intron 10.0%
!! TAGAATTTATGTAATTGAAT+TGG + chr3_4:80173996-80174015 Msa0526330:intron 15.0%
!!! CATTCATATTTTTAACAAAA+TGG - chr3_4:80174864-80174883 None:intergenic 15.0%
!! TATTTATAATGATAATTGAG+CGG + chr3_4:80175777-80175796 Msa0526330:intron 15.0%
!!! ATGTTTCCTTTTAATATTTT+GGG + chr3_4:80176177-80176196 Msa0526330:intron 15.0%
!! TATATAAATCTACACAAAAT+CGG - chr3_4:80176853-80176872 None:intergenic 15.0%
!! ACAAGTTTAAAAACTATTAA+TGG + chr3_4:80177078-80177097 Msa0526330:intron 15.0%
!!! TTTTAATTTTTAATTGGGGT+CGG + chr3_4:80174047-80174066 Msa0526330:intron 20.0%
!!! TCATACACTTTTTTAATGAA+TGG + chr3_4:80174160-80174179 Msa0526330:intron 20.0%
!!! TGTATTTGATTTTATATGCA+AGG - chr3_4:80175184-80175203 None:intergenic 20.0%
!! TGCATATAAAATCAAATACA+AGG + chr3_4:80175184-80175203 Msa0526330:CDS 20.0%
!! CTATTTATAAATTATAGCCA+AGG - chr3_4:80175671-80175690 None:intergenic 20.0%
!! AAACTTATTGTATATACAGA+CGG - chr3_4:80175696-80175715 None:intergenic 20.0%
!!! GATGTTTCCTTTTAATATTT+TGG + chr3_4:80176176-80176195 Msa0526330:intron 20.0%
!!! TGTTTCCTTTTAATATTTTG+GGG + chr3_4:80176178-80176197 Msa0526330:intron 20.0%
!!! CATTATATTTTTACCTTATG+AGG - chr3_4:80176420-80176439 None:intergenic 20.0%
!! ATAAATCTATACACAAAATC+AGG - chr3_4:80176637-80176656 None:intergenic 20.0%
!!! TTTTTAAACTTGTCTTAACT+TGG - chr3_4:80177071-80177090 None:intergenic 20.0%
!! AAATAAGAAAGAAAGAAACA+AGG - chr3_4:80177704-80177723 None:intergenic 20.0%
!! TTCTTATTATTGATGTACAA+TGG + chr3_4:80177744-80177763 Msa0526330:three_prime_UTR 20.0%
!!! AAGATACCACAAATTTTGAT+AGG - chr3_4:80173887-80173906 None:intergenic 25.0%
! TTATGTAATTGAATTGGTAG+TGG + chr3_4:80174002-80174021 Msa0526330:intron 25.0%
!!! TTTAATTTTTAATTGGGGTC+GGG + chr3_4:80174048-80174067 Msa0526330:intron 25.0%
!!! TTGAGTTGAATTTGTTTTTG+TGG + chr3_4:80174224-80174243 Msa0526330:intron 25.0%
!!! TTGTTTTTGTGGTTTTTGAT+AGG + chr3_4:80174235-80174254 Msa0526330:intron 25.0%
!! TTGGGTTTATCTCAAATTTT+TGG + chr3_4:80174546-80174565 Msa0526330:intron 25.0%
! TAACAAAATGGAAAAGCTTT+AGG - chr3_4:80174852-80174871 None:intergenic 25.0%
!!! AGAAATAAGTAATTTGCTTC+AGG - chr3_4:80175110-80175129 None:intergenic 25.0%
!! GAAGCAAATTACTTATTTCT+TGG + chr3_4:80175110-80175129 Msa0526330:CDS 25.0%
! TGATTGCTTTAATTGTTTAC+CGG + chr3_4:80175319-80175338 Msa0526330:CDS 25.0%
! TTAAAAACTTGGATCAGATA+CGG + chr3_4:80175399-80175418 Msa0526330:CDS 25.0%
! TTATAAATTATAGCCAAGGA+TGG - chr3_4:80175667-80175686 None:intergenic 25.0%
! AAAAAGAGGTAGTTAAACAA+AGG - chr3_4:80176031-80176050 None:intergenic 25.0%
!!! GTTTCCTTTTAATATTTTGG+GGG + chr3_4:80176179-80176198 Msa0526330:intron 25.0%
!!! TATATTTTTACCTTATGAGG+TGG - chr3_4:80176417-80176436 None:intergenic 25.0%
! TGATTCTATGTATATGTGTA+TGG + chr3_4:80176475-80176494 Msa0526330:intron 25.0%
! GATTCTATGTATATGTGTAT+GGG + chr3_4:80176476-80176495 Msa0526330:intron 25.0%
! TATGAAACTTCTGAATTCTT+TGG - chr3_4:80176760-80176779 None:intergenic 25.0%
! ACATAAATCTACACAAAATC+AGG - chr3_4:80176959-80176978 None:intergenic 25.0%
!!! TTGGACACTTTAATTTTGAT+GGG - chr3_4:80177108-80177127 None:intergenic 25.0%
!!! TTTGGACACTTTAATTTTGA+TGG - chr3_4:80177109-80177128 None:intergenic 25.0%
!!! ACAGGAAGCTTTTTTTTTTT+GGG - chr3_4:80177254-80177273 None:intergenic 25.0%
! AAAAAAAAAAAGCTTCCTGT+GGG + chr3_4:80177254-80177273 Msa0526330:intron 25.0%
! TTGTGATATTTAATGAGTTC+TGG + chr3_4:80177430-80177449 Msa0526330:intron 25.0%
! ATATAAACCTTTAACCTATG+TGG - chr3_4:80177550-80177569 None:intergenic 25.0%
ATTGAAGATGTATCATCAAC+TGG + chr3_4:80173533-80173552 Msa0526330:five_prime_UTR 30.0%
TTGAAGATGTATCATCAACT+GGG + chr3_4:80173534-80173553 Msa0526330:five_prime_UTR 30.0%
!!! CACTTTTTTAATGAATGGCT+AGG + chr3_4:80174165-80174184 Msa0526330:intron 30.0%
! TGGTTTTTGATAGGATTGTT+TGG + chr3_4:80174244-80174263 Msa0526330:intron 30.0%
! GTTTTCTTCAGACAATTAAG+TGG + chr3_4:80174266-80174285 Msa0526330:intron 30.0%
TTATTTGTGTTTCCACATTG+CGG + chr3_4:80174329-80174348 Msa0526330:intron 30.0%
!!! TTTTAATTTTAGGGATGCAG+TGG + chr3_4:80174658-80174677 Msa0526330:intron 30.0%
CATGTTATCAACTTATCATC+AGG + chr3_4:80174818-80174837 Msa0526330:intron 30.0%
ATACACAACATAATGAGACA+AGG - chr3_4:80174948-80174967 None:intergenic 30.0%
! GGTTTAAACAATTTGTTTGC+AGG + chr3_4:80175026-80175045 Msa0526330:intron 30.0%
!! ATAAGTAATTTGCTTCAGGT+GGG - chr3_4:80175106-80175125 None:intergenic 30.0%
!! AATAAGTAATTTGCTTCAGG+TGG - chr3_4:80175107-80175126 None:intergenic 30.0%
GAAACCATAAATACGATTGA+TGG - chr3_4:80175249-80175268 None:intergenic 30.0%
TTCTCCTGAACTTAAAAACT+TGG + chr3_4:80175388-80175407 Msa0526330:CDS 30.0%
!!! TGATCCAAGTTTTTAAGTTC+AGG - chr3_4:80175395-80175414 None:intergenic 30.0%
! GAGGTGTTTCATTTACATTT+GGG + chr3_4:80175522-80175541 Msa0526330:CDS 30.0%
AGGTGTTTCATTTACATTTG+GGG + chr3_4:80175523-80175542 Msa0526330:CDS 30.0%
ACTTCAACACCTCATAAATA+TGG + chr3_4:80175975-80175994 Msa0526330:intron 30.0%
CTTCAACACCTCATAAATAT+GGG + chr3_4:80175976-80175995 Msa0526330:intron 30.0%
AGAATGATCCCATATTTATG+AGG - chr3_4:80175987-80176006 None:intergenic 30.0%
TTATATATTTGTCTGTGTGC+TGG + chr3_4:80176089-80176108 Msa0526330:intron 30.0%
AAACATCAGATCAGATTTAC+TGG - chr3_4:80176163-80176182 None:intergenic 30.0%
! AAGTTTCATGTCACTTAAGT+TGG + chr3_4:80176589-80176608 Msa0526330:intron 30.0%
TGATTCTATGTATATGTGCA+TGG + chr3_4:80176685-80176704 Msa0526330:intron 30.0%
GATTCTATGTATATGTGCAT+GGG + chr3_4:80176686-80176705 Msa0526330:intron 30.0%
ATTCTATGTATATGTGCATG+GGG + chr3_4:80176687-80176706 Msa0526330:intron 30.0%
! AAGTTTCATGTCACTTAAGT+TGG + chr3_4:80176589-80176608 Msa0526330:intron 30.0%
AGAAGTTTCATAACTTCTAC+TGG + chr3_4:80176904-80176923 Msa0526330:intron 30.0%
!! ATTGCTTTAGAGAAACATCT+TGG + chr3_4:80177026-80177045 Msa0526330:intron 30.0%
!! TTGCTTTAGAGAAACATCTT+GGG + chr3_4:80177027-80177046 Msa0526330:intron 30.0%
AAAATGGTGAATTGTGTCTA+TGG - chr3_4:80177159-80177178 None:intergenic 30.0%
!!! AAGCTTTTTTTTTTTGGGTG+GGG - chr3_4:80177249-80177268 None:intergenic 30.0%
!!! GAAGCTTTTTTTTTTTGGGT+GGG - chr3_4:80177250-80177269 None:intergenic 30.0%
!!! CACAGGAAGCTTTTTTTTTT+TGG - chr3_4:80177255-80177274 None:intergenic 30.0%
CAAAAAAAAAAAGCTTCCTG+TGG + chr3_4:80177253-80177272 Msa0526330:intron 30.0%
AAAGAAAGAAACAAGGATAG+GGG - chr3_4:80177697-80177716 None:intergenic 30.0%
GAAAGAAAGAAACAAGGATA+GGG - chr3_4:80177698-80177717 None:intergenic 30.0%
AGAAAGAAAGAAACAAGGAT+AGG - chr3_4:80177699-80177718 None:intergenic 30.0%
ATGGAAATTCAAACTCCATA+AGG + chr3_4:80177763-80177782 Msa0526330:three_prime_UTR 30.0%
TGGAAATTCAAACTCCATAA+GGG + chr3_4:80177764-80177783 Msa0526330:three_prime_UTR 30.0%
AAACTCAGTCGTTTACAAGA+AGG + chr3_4:80173570-80173589 Msa0526330:five_prime_UTR 35.0%
AGAGAGAGAGAGAAAGAAAA+CGG - chr3_4:80173689-80173708 None:intergenic 35.0%
! GCTTCAAGTTCAAGAAGATT+AGG - chr3_4:80173863-80173882 None:intergenic 35.0%
GAAGCTCCTATCAAAATTTG+TGG + chr3_4:80173878-80173897 Msa0526330:CDS 35.0%
!! TTTTAATTAAAGCGGCACTG+AGG + chr3_4:80174085-80174104 Msa0526330:intron 35.0%
! TTTAATTAAAGCGGCACTGA+GGG + chr3_4:80174086-80174105 Msa0526330:intron 35.0%
TAAACTGATTGACAACCAAG+GGG - chr3_4:80174427-80174446 None:intergenic 35.0%
CTAAACTGATTGACAACCAA+GGG - chr3_4:80174428-80174447 None:intergenic 35.0%
ACTAAACTGATTGACAACCA+AGG - chr3_4:80174429-80174448 None:intergenic 35.0%
TTCTTTCTTCTGTGAATTCC+CGG + chr3_4:80174468-80174487 Msa0526330:intron 35.0%
!! TGCATGTTTGATTTGACGTT+TGG + chr3_4:80174688-80174707 Msa0526330:intron 35.0%
!!! TTTAGCTTTTGCACATACTG+TGG + chr3_4:80174749-80174768 Msa0526330:intron 35.0%
! TTTTGCACATACTGTGGTTT+TGG + chr3_4:80174755-80174774 Msa0526330:intron 35.0%
!! AGTAAGAGTGTGTTTGGTTT+TGG - chr3_4:80174792-80174811 None:intergenic 35.0%
!! CTCTAAAGTAAGAGTGTGTT+TGG - chr3_4:80174798-80174817 None:intergenic 35.0%
TTGTGTATGTATCTTCCTTC+AGG + chr3_4:80174960-80174979 Msa0526330:intron 35.0%
AAAAGCAAAATAGGACCTGA+AGG - chr3_4:80174978-80174997 None:intergenic 35.0%
ACAGTGGTCAAAAGCAAAAT+AGG - chr3_4:80174987-80175006 None:intergenic 35.0%
TTAACACTTACAGATGACAG+TGG - chr3_4:80175003-80175022 None:intergenic 35.0%
GTCATCTGTAAGTGTTAAAC+TGG + chr3_4:80175005-80175024 Msa0526330:intron 35.0%
!!! CTTTTAAGGCTGTTCGAATA+CGG + chr3_4:80175074-80175093 Msa0526330:CDS 35.0%
!!! TTTTAAGGCTGTTCGAATAC+GGG + chr3_4:80175075-80175094 Msa0526330:CDS 35.0%
ACCATAAATACGATTGATGG+AGG - chr3_4:80175246-80175265 None:intergenic 35.0%
! CGAGGTGTTTCATTTACATT+TGG + chr3_4:80175521-80175540 Msa0526330:CDS 35.0%
TTGAAATCAACCAAGCTACA+GGG - chr3_4:80175619-80175638 None:intergenic 35.0%
ATTGAAATCAACCAAGCTAC+AGG - chr3_4:80175620-80175639 None:intergenic 35.0%
GAGAAAGACTACATGAGTAA+AGG + chr3_4:80175818-80175837 Msa0526330:intron 35.0%
AGTAAAGGATATGACAAAGC+TGG + chr3_4:80175833-80175852 Msa0526330:intron 35.0%
GTAAAGGATATGACAAAGCT+GGG + chr3_4:80175834-80175853 Msa0526330:intron 35.0%
AGTGTTAAGCACAAAGGAAA+GGG - chr3_4:80175954-80175973 None:intergenic 35.0%
TAGTGTTAAGCACAAAGGAA+AGG - chr3_4:80175955-80175974 None:intergenic 35.0%
GAAGTTAGTGTTAAGCACAA+AGG - chr3_4:80175960-80175979 None:intergenic 35.0%
ATATCCATCTTCTACAACCT+GGG - chr3_4:80176211-80176230 None:intergenic 35.0%
TCAAACTCACCACAGTAATT+TGG - chr3_4:80176276-80176295 None:intergenic 35.0%
TTCTATGTATATGTGCATGG+GGG + chr3_4:80176688-80176707 Msa0526330:intron 35.0%
! TCTTAACTTGGTAAGAGCAT+AGG - chr3_4:80177059-80177078 None:intergenic 35.0%
AAAAAGAGATTCAACGTTCG+CGG + chr3_4:80177126-80177145 Msa0526330:intron 35.0%
! CACAATTCACCATTTTCTTG+TGG + chr3_4:80177163-80177182 Msa0526330:intron 35.0%
! ACCATTTTCTTGTGGTTTCT+AGG + chr3_4:80177171-80177190 Msa0526330:intron 35.0%
! CCATTTTCTTGTGGTTTCTA+GGG + chr3_4:80177172-80177191 Msa0526330:intron 35.0%
!! CATTTTCTTGTGGTTTCTAG+GGG + chr3_4:80177173-80177192 Msa0526330:intron 35.0%
! AGGGGTATATAAGTGAGAAA+TGG + chr3_4:80177191-80177210 Msa0526330:intron 35.0%
!!! TTTTTTTTTTTGGGTGGGGA+GGG - chr3_4:80177245-80177264 None:intergenic 35.0%
!!! GGAAGCTTTTTTTTTTTGGG+TGG - chr3_4:80177251-80177270 None:intergenic 35.0%
! ACGGGTCGACTAAAATTTTT+AGG + chr3_4:80177302-80177321 Msa0526330:intron 35.0%
TTAATTAATTCTTCCCACCC+TGG - chr3_4:80177472-80177491 None:intergenic 35.0%
ACTCGAGCTATGTAACTATA+AGG + chr3_4:80177495-80177514 Msa0526330:three_prime_UTR 35.0%
TCATTCTCCACATAGGTTAA+AGG + chr3_4:80177540-80177559 Msa0526330:three_prime_UTR 35.0%
! AGGTTTATATTTCTGCTACC+TGG + chr3_4:80177560-80177579 Msa0526330:three_prime_UTR 35.0%
AAGAAAGAAACAAGGATAGG+GGG - chr3_4:80177696-80177715 None:intergenic 35.0%
GGAAATTCAAACTCCATAAG+GGG + chr3_4:80177765-80177784 Msa0526330:three_prime_UTR 35.0%
CATAACAAGATTACCCCTTA+TGG - chr3_4:80177781-80177800 None:intergenic 35.0%
CATAAGGGGTAATCTTGTTA+TGG + chr3_4:80177779-80177798 Msa0526330:three_prime_UTR 35.0%
! ATATTTTTCCTACTCGCCAT+AGG - chr3_4:80177858-80177877 None:intergenic 35.0%
ATGTATCATCAACTGGGCTA+GGG + chr3_4:80173540-80173559 Msa0526330:five_prime_UTR 40.0%
TCAGTCGTTTACAAGAAGGA+GGG + chr3_4:80173574-80173593 Msa0526330:five_prime_UTR 40.0%
GTTTACAAGAAGGAGGGAAA+CGG + chr3_4:80173580-80173599 Msa0526330:five_prime_UTR 40.0%
AAAGAGAGAGAAACGCGAAA+CGG - chr3_4:80173654-80173673 None:intergenic 40.0%
! CTCTCTCTCTCTTTTTCTCT+TGG + chr3_4:80173697-80173716 Msa0526330:five_prime_UTR 40.0%
! CTCTCTTTTTCTCTTGGAGA+TGG + chr3_4:80173703-80173722 Msa0526330:exon 40.0%
TCTCTTGGAGATGGATGATA+CGG + chr3_4:80173712-80173731 Msa0526330:exon 40.0%
AAGCTTGTATCAGCGAAGAA+CGG + chr3_4:80173755-80173774 Msa0526330:CDS 40.0%
! TCAGCTTTGTACTTCTGCTA+AGG + chr3_4:80173820-80173839 Msa0526330:CDS 40.0%
TGCTTCTTTCGACACTTCTT+TGG + chr3_4:80174197-80174216 Msa0526330:intron 40.0%
ATCTCAACAGGAAGAGATAC+TGG - chr3_4:80174398-80174417 None:intergenic 40.0%
AGTATCTCTTCCTGTTGAGA+TGG + chr3_4:80174397-80174416 Msa0526330:intron 40.0%
GTATCTCTTCCTGTTGAGAT+GGG + chr3_4:80174398-80174417 Msa0526330:intron 40.0%
!! TCAGTTTAGTTTGAAACCCC+TGG + chr3_4:80174439-80174458 Msa0526330:intron 40.0%
CAGTATGTTCCTGACATAAG+TGG - chr3_4:80174511-80174530 None:intergenic 40.0%
AAACCCAAAAACACACCACA+AGG - chr3_4:80174534-80174553 None:intergenic 40.0%
AAAAGCCCACTTATCTAACG+TGG + chr3_4:80174624-80174643 Msa0526330:intron 40.0%
AGTTGCCACGTTAGATAAGT+GGG - chr3_4:80174632-80174651 None:intergenic 40.0%
AAAGTCCCAGATCATGGTTT+GGG + chr3_4:80174711-80174730 Msa0526330:intron 40.0%
! TTTTGCCCAAACCATGATCT+GGG - chr3_4:80174719-80174738 None:intergenic 40.0%
!!! GTGTGTTTGGTTTTGGCATT+CGG - chr3_4:80174785-80174804 None:intergenic 40.0%
! CACCTTGAGTATCTGGTTTA+CGG + chr3_4:80174894-80174913 Msa0526330:intron 40.0%
TTCCGTAAACCAGATACTCA+AGG - chr3_4:80174899-80174918 None:intergenic 40.0%
AGACAAGGCAATCAAACTAG+GGG - chr3_4:80174933-80174952 None:intergenic 40.0%
GAGACAAGGCAATCAAACTA+GGG - chr3_4:80174934-80174953 None:intergenic 40.0%
TGAGACAAGGCAATCAAACT+AGG - chr3_4:80174935-80174954 None:intergenic 40.0%
! GCCAGTTTTCAGACCTTTTA+AGG + chr3_4:80175060-80175079 Msa0526330:CDS 40.0%
GCCTTAAAAGGTCTGAAAAC+TGG - chr3_4:80175064-80175083 None:intergenic 40.0%
CGTATTCGAACAGCCTTAAA+AGG - chr3_4:80175076-80175095 None:intergenic 40.0%
! TTTAAGGCTGTTCGAATACG+GGG + chr3_4:80175076-80175095 Msa0526330:CDS 40.0%
CTTGGAGATTATGTTGATCG+TGG + chr3_4:80175128-80175147 Msa0526330:CDS 40.0%
AGGAGAACTTCTTTCTTCTC+AGG + chr3_4:80175204-80175223 Msa0526330:CDS 40.0%
GGAGAACTTCTTTCTTCTCA+GGG + chr3_4:80175205-80175224 Msa0526330:CDS 40.0%
GAGAACTTCTTTCTTCTCAG+GGG + chr3_4:80175206-80175225 Msa0526330:CDS 40.0%
GCCTCCATCAATCGTATTTA+TGG + chr3_4:80175242-80175261 Msa0526330:CDS 40.0%
AGAAGATCCTTTGCATGCAT+GGG + chr3_4:80175360-80175379 Msa0526330:CDS 40.0%
CATGATCTGGCACATCAATA+GGG - chr3_4:80175436-80175455 None:intergenic 40.0%
TGATCCTGATAAAGATCTCG+AGG + chr3_4:80175481-80175500 Msa0526330:CDS 40.0%
GATCCTGATAAAGATCTCGA+GGG + chr3_4:80175482-80175501 Msa0526330:CDS 40.0%
TGATAAAGATCTCGAGGGAT+GGG + chr3_4:80175487-80175506 Msa0526330:CDS 40.0%
! ATTTACATTTGGGGCTGACA+AGG + chr3_4:80175532-80175551 Msa0526330:CDS 40.0%
ATTATAGCCAAGGATGGCAT+TGG - chr3_4:80175661-80175680 None:intergenic 40.0%
ATGCACAACACGACTGAATA+TGG + chr3_4:80175913-80175932 Msa0526330:intron 40.0%
! CACGACTGAATATGGTTTTC+TGG + chr3_4:80175921-80175940 Msa0526330:intron 40.0%
! GACTGAATATGGTTTTCTGG+CGG + chr3_4:80175924-80175943 Msa0526330:intron 40.0%
GTGTTAAGCACAAAGGAAAG+GGG - chr3_4:80175953-80175972 None:intergenic 40.0%
! ATTGGGATTTTGCTTCGCTT+AGG + chr3_4:80176115-80176134 Msa0526330:intron 40.0%
! TTGGGATTTTGCTTCGCTTA+GGG + chr3_4:80176116-80176135 Msa0526330:intron 40.0%
GCAGCCCCCAAAATATTAAA+AGG - chr3_4:80176186-80176205 None:intergenic 40.0%
CATATCCATCTTCTACAACC+TGG - chr3_4:80176212-80176231 None:intergenic 40.0%
!!! GTTTTTTGCCAAACGTAAGC+TGG + chr3_4:80176233-80176252 Msa0526330:CDS 40.0%
TTCTCTGCACCAAATTACTG+TGG + chr3_4:80176264-80176283 Msa0526330:CDS 40.0%
!! TGTGGTGAGTTTGATAATGC+CGG + chr3_4:80176282-80176301 Msa0526330:CDS 40.0%
TATCGGAAGACTTCAGTATC+TGG - chr3_4:80176347-80176366 None:intergenic 40.0%
ACTGAAGTCTTCCGATAAGA+AGG + chr3_4:80176350-80176369 Msa0526330:CDS 40.0%
CTGAAGTCTTCCGATAAGAA+GGG + chr3_4:80176351-80176370 Msa0526330:CDS 40.0%
TCCAACTTTGCCCTTCTTAT+CGG - chr3_4:80176364-80176383 None:intergenic 40.0%
AAGAAGGGCAAAGTTGGATT+TGG + chr3_4:80176366-80176385 Msa0526330:CDS 40.0%
! GCGAACGTTGAATCTCTTTT+TGG - chr3_4:80177127-80177146 None:intergenic 40.0%
AAAAGAGATTCAACGTTCGC+GGG + chr3_4:80177127-80177146 Msa0526330:intron 40.0%
CCCTAGAAACCACAAGAAAA+TGG - chr3_4:80177175-80177194 None:intergenic 40.0%
TGAGAAATGGCTATGCTCTT+TGG + chr3_4:80177204-80177223 Msa0526330:intron 40.0%
GAGAAATGGCTATGCTCTTT+GGG + chr3_4:80177205-80177224 Msa0526330:intron 40.0%
AGAAATGGCTATGCTCTTTG+GGG + chr3_4:80177206-80177225 Msa0526330:intron 40.0%
!!! TTTTTTTTTTGGGTGGGGAG+GGG - chr3_4:80177244-80177263 None:intergenic 40.0%
!!! CTTTTTTTTTTTGGGTGGGG+AGG - chr3_4:80177246-80177265 None:intergenic 40.0%
TAGTCGACCCGTATACATAA+GGG - chr3_4:80177294-80177313 None:intergenic 40.0%
TTAGTCGACCCGTATACATA+AGG - chr3_4:80177295-80177314 None:intergenic 40.0%
GCCATATACCTGTTATTCCA+GGG + chr3_4:80177452-80177471 Msa0526330:intron 40.0%
ACCCTGGAATAACAGGTATA+TGG - chr3_4:80177456-80177475 None:intergenic 40.0%
ATATACCTGTTATTCCAGGG+TGG + chr3_4:80177455-80177474 Msa0526330:intron 40.0%
TATACCTGTTATTCCAGGGT+GGG + chr3_4:80177456-80177475 Msa0526330:intron 40.0%
TAACTATAAGGTCAGTGAGC+TGG + chr3_4:80177507-80177526 Msa0526330:three_prime_UTR 40.0%
ATGGCTTTCATTCTCCACAT+AGG + chr3_4:80177533-80177552 Msa0526330:three_prime_UTR 40.0%
! TATATTTCTGCTACCTGGCA+TGG + chr3_4:80177565-80177584 Msa0526330:three_prime_UTR 40.0%
AACGACAACTGAAGACAGTA+TGG + chr3_4:80177632-80177651 Msa0526330:three_prime_UTR 40.0%
GATGTATCATCAACTGGGCT+AGG + chr3_4:80173539-80173558 Msa0526330:five_prime_UTR 45.0%
CTCAGTCGTTTACAAGAAGG+AGG + chr3_4:80173573-80173592 Msa0526330:five_prime_UTR 45.0%
GAAGCAAGTTCATCTTACCG+AGG + chr3_4:80173787-80173806 Msa0526330:CDS 45.0%
AAGCTGACGAATATCAGCCT+CGG - chr3_4:80173807-80173826 None:intergenic 45.0%
TTGTGTTTCCACATTGCGGA+TGG + chr3_4:80174333-80174352 Msa0526330:intron 45.0%
TGTGTTTCCACATTGCGGAT+GGG + chr3_4:80174334-80174353 Msa0526330:intron 45.0%
CTGAGGCTGTATGAGATAGA+AGG + chr3_4:80174370-80174389 Msa0526330:intron 45.0%
AGAAGAAAGAAGCTCGACCA+GGG - chr3_4:80174459-80174478 None:intergenic 45.0%
CTTCTGTGAATTCCCGGTTT+AGG + chr3_4:80174474-80174493 Msa0526330:intron 45.0%
! ACTGCCTTGTGGTGTGTTTT+TGG + chr3_4:80174527-80174546 Msa0526330:intron 45.0%
! CTGCCTTGTGGTGTGTTTTT+GGG + chr3_4:80174528-80174547 Msa0526330:intron 45.0%
TTGGCCTGTTGACATTTGTG+CGG + chr3_4:80174565-80174584 Msa0526330:intron 45.0%
GAGTTGCCACGTTAGATAAG+TGG - chr3_4:80174633-80174652 None:intergenic 45.0%
GTTTGGAAAGTCCCAGATCA+TGG + chr3_4:80174705-80174724 Msa0526330:intron 45.0%
GAAAGTCCCAGATCATGGTT+TGG + chr3_4:80174710-80174729 Msa0526330:intron 45.0%
! CTTTTGCCCAAACCATGATC+TGG - chr3_4:80174720-80174739 None:intergenic 45.0%
! CCAGATACTCAAGGTGTCAA+GGG - chr3_4:80174890-80174909 None:intergenic 45.0%
! ACCAGATACTCAAGGTGTCA+AGG - chr3_4:80174891-80174910 None:intergenic 45.0%
ACAAGGCAATCAAACTAGGG+GGG - chr3_4:80174931-80174950 None:intergenic 45.0%
GACAAGGCAATCAAACTAGG+GGG - chr3_4:80174932-80174951 None:intergenic 45.0%
TTGTTTGCAGGAGATGTCCA+TGG + chr3_4:80175038-80175057 Msa0526330:intron 45.0%
AAAGGTCTGAAAACTGGCCA+TGG - chr3_4:80175058-80175077 None:intergenic 45.0%
TTAAGGCTGTTCGAATACGG+GGG + chr3_4:80175077-80175096 Msa0526330:CDS 45.0%
GTTTCTACGATGAGTGCAAG+AGG + chr3_4:80175264-80175283 Msa0526330:CDS 45.0%
! GGAGGTATAATGTTCGTCTC+TGG + chr3_4:80175285-80175304 Msa0526330:CDS 45.0%
TCATCTACTAGAGCAGCAAC+CGG - chr3_4:80175341-80175360 None:intergenic 45.0%
GAGAAGATCCTTTGCATGCA+TGG + chr3_4:80175359-80175378 Msa0526330:CDS 45.0%
GAAGATCCTTTGCATGCATG+GGG + chr3_4:80175361-80175380 Msa0526330:CDS 45.0%
AAGATCCTTTGCATGCATGG+GGG + chr3_4:80175362-80175381 Msa0526330:CDS 45.0%
CCATGATCTGGCACATCAAT+AGG - chr3_4:80175437-80175456 None:intergenic 45.0%
CCTATTGATGTGCCAGATCA+TGG + chr3_4:80175434-80175453 Msa0526330:CDS 45.0%
CATCCCTCGAGATCTTTATC+AGG - chr3_4:80175488-80175507 None:intergenic 45.0%
CTGATAAAGATCTCGAGGGA+TGG + chr3_4:80175486-80175505 Msa0526330:CDS 45.0%
GATAAAGATCTCGAGGGATG+GGG + chr3_4:80175488-80175507 Msa0526330:CDS 45.0%
TCTGATATGTAGAGCTCACC+AGG + chr3_4:80175586-80175605 Msa0526330:CDS 45.0%
AAGCTACAGGGTTCATTACC+TGG - chr3_4:80175607-80175626 None:intergenic 45.0%
AGGTAATGAACCCTGTAGCT+TGG + chr3_4:80175606-80175625 Msa0526330:intron 45.0%
TGATTGACCAATGCCATCCT+TGG + chr3_4:80175651-80175670 Msa0526330:intron 45.0%
! TAAGCACATGCTTTGAGCAG+AGG + chr3_4:80175754-80175773 Msa0526330:intron 45.0%
AATTGAGCGGTGAGACTTGA+AGG + chr3_4:80175790-80175809 Msa0526330:intron 45.0%
! TTGTCTGTGTGCTGGTGTAT+TGG + chr3_4:80176097-80176116 Msa0526330:intron 45.0%
! TGTCTGTGTGCTGGTGTATT+GGG + chr3_4:80176098-80176117 Msa0526330:intron 45.0%
! TGGGATTTTGCTTCGCTTAG+GGG + chr3_4:80176117-80176136 Msa0526330:intron 45.0%
TACAGTCACCAGCTTACGTT+TGG - chr3_4:80176244-80176263 None:intergenic 45.0%
ATCCACACTCATCATAGCAC+CGG - chr3_4:80176304-80176323 None:intergenic 45.0%
TCCGATAAGAAGGGCAAAGT+TGG + chr3_4:80176360-80176379 Msa0526330:CDS 45.0%
GGCAATAACTCATCAAGACC+TGG + chr3_4:80176387-80176406 Msa0526330:CDS 45.0%
!!! TTTTTTTTTGGGTGGGGAGG+GGG - chr3_4:80177243-80177262 None:intergenic 45.0%
GGCCATATACCTGTTATTCC+AGG + chr3_4:80177451-80177470 Msa0526330:intron 45.0%
TGTGAATCATCAACCATGCC+AGG - chr3_4:80177581-80177600 None:intergenic 45.0%
TCAGTTGTCGTTGCAAAGGA+AGG - chr3_4:80177624-80177643 None:intergenic 45.0%
GTCTTCAGTTGTCGTTGCAA+AGG - chr3_4:80177628-80177647 None:intergenic 45.0%
ACAACTGAAGACAGTATGGC+AGG + chr3_4:80177636-80177655 Msa0526330:three_prime_UTR 45.0%
CAACTGAAGACAGTATGGCA+GGG + chr3_4:80177637-80177656 Msa0526330:three_prime_UTR 45.0%
!!! TTAATTTTAATTTTTAATTG+GGG + chr3_4:80174043-80174062 Msa0526330:intron 5.0%
!!! TTTTTTTTTTTTAATTAAAG+CGG + chr3_4:80174077-80174096 Msa0526330:intron 5.0%
TACAAGAAGGAGGGAAACGG+CGG + chr3_4:80173583-80173602 Msa0526330:five_prime_UTR 50.0%
GAGAGAAACGCGAAACGGAA+AGG - chr3_4:80173649-80173668 None:intergenic 50.0%
GTGTTTCCACATTGCGGATG+GGG + chr3_4:80174335-80174354 Msa0526330:intron 50.0%
TGTTTCCACATTGCGGATGG+GGG + chr3_4:80174336-80174355 Msa0526330:intron 50.0%
TGGGGGGTTATAATGCACTG+AGG + chr3_4:80174353-80174372 Msa0526330:intron 50.0%
AAGGGGTTTCCCATCTCAAC+AGG - chr3_4:80174410-80174429 None:intergenic 50.0%
TGTTGAGATGGGAAACCCCT+TGG + chr3_4:80174409-80174428 Msa0526330:intron 50.0%
GAAGAAAGAAGCTCGACCAG+GGG - chr3_4:80174458-80174477 None:intergenic 50.0%
CAGAAGAAAGAAGCTCGACC+AGG - chr3_4:80174460-80174479 None:intergenic 50.0%
CTGTGAATTCCCGGTTTAGG+TGG + chr3_4:80174477-80174496 Msa0526330:intron 50.0%
TTCCCGGTTTAGGTGGTATC+TGG + chr3_4:80174484-80174503 Msa0526330:intron 50.0%
TCCCGGTTTAGGTGGTATCT+GGG + chr3_4:80174485-80174504 Msa0526330:intron 50.0%
GTATCTGGGCCACTTATGTC+AGG + chr3_4:80174499-80174518 Msa0526330:intron 50.0%
GTCAGGAACATACTGCCTTG+TGG + chr3_4:80174516-80174535 Msa0526330:intron 50.0%
AGTGCCGCACAAATGTCAAC+AGG - chr3_4:80174572-80174591 None:intergenic 50.0%
GTTGACATTTGTGCGGCACT+CGG + chr3_4:80174572-80174591 Msa0526330:intron 50.0%
TGTGCGGCACTCGGTTTAAA+TGG + chr3_4:80174581-80174600 Msa0526330:intron 50.0%
CCCTTGACACCTTGAGTATC+TGG + chr3_4:80174887-80174906 Msa0526330:intron 50.0%
! GATTGATGGAGGCGCATTCA+TGG - chr3_4:80175235-80175254 None:intergenic 50.0%
TCTACGATGAGTGCAAGAGG+AGG + chr3_4:80175267-80175286 Msa0526330:CDS 50.0%
AAAGTCCCCCATGCATGCAA+AGG - chr3_4:80175370-80175389 None:intergenic 50.0%
TATCAGGATCAGCCCACAGA+AGG - chr3_4:80175472-80175491 None:intergenic 50.0%
GGATGGGGAGAAAATGATCG+AGG + chr3_4:80175503-80175522 Msa0526330:CDS 50.0%
ACCTGGAACTCCACCTCATA+AGG + chr3_4:80176404-80176423 Msa0526330:CDS 50.0%
ACCTTATGAGGTGGAGTTCC+AGG - chr3_4:80176408-80176427 None:intergenic 50.0%
TCTTCCCACCCTGGAATAAC+AGG - chr3_4:80177463-80177482 None:intergenic 50.0%
AAGGTCAGTGAGCTGGATGA+TGG + chr3_4:80177514-80177533 Msa0526330:three_prime_UTR 50.0%
TGTCGTTGCAAAGGAAGGCA+GGG - chr3_4:80177619-80177638 None:intergenic 50.0%
TTGTCGTTGCAAAGGAAGGC+AGG - chr3_4:80177620-80177639 None:intergenic 50.0%
AAGACAGTATGGCAGGGACA+TGG + chr3_4:80177643-80177662 Msa0526330:three_prime_UTR 50.0%
GTTTCCACATTGCGGATGGG+GGG + chr3_4:80174337-80174356 Msa0526330:intron 55.0%
ATAACCCCCCATCCGCAATG+TGG - chr3_4:80174344-80174363 None:intergenic 55.0%
GCCCAGATACCACCTAAACC+GGG - chr3_4:80174489-80174508 None:intergenic 55.0%
GGCCCAGATACCACCTAAAC+CGG - chr3_4:80174490-80174509 None:intergenic 55.0%
TCGCAGAGAAGGCCATGATC+TGG - chr3_4:80175449-80175468 None:intergenic 55.0%
CCTTCTCTGCGACCTTCTGT+GGG + chr3_4:80175457-80175476 Msa0526330:CDS 55.0%
GCGTCCCAGGTTGTAGAAGA+TGG + chr3_4:80176204-80176223 Msa0526330:intron 55.0%
!! TGCCGGTGCTATGATGAGTG+TGG + chr3_4:80176299-80176318 Msa0526330:CDS 55.0%
GACCCCGGCCCTTATGTATA+CGG + chr3_4:80177283-80177302 Msa0526330:intron 55.0%
ACCCCGGCCCTTATGTATAC+GGG + chr3_4:80177284-80177303 Msa0526330:intron 55.0%
ACCCGTATACATAAGGGCCG+GGG - chr3_4:80177288-80177307 None:intergenic 55.0%
GACCCGTATACATAAGGGCC+GGG - chr3_4:80177289-80177308 None:intergenic 55.0%
CGACCCGTATACATAAGGGC+CGG - chr3_4:80177290-80177309 None:intergenic 55.0%
ACACCGAGTGTGACAGCCTA+TGG + chr3_4:80177839-80177858 Msa0526330:three_prime_UTR 55.0%
TCGCCATAGGCTGTCACACT+CGG - chr3_4:80177845-80177864 None:intergenic 55.0%
TGTGACAGCCTATGGCGAGT+AGG + chr3_4:80177847-80177866 Msa0526330:three_prime_UTR 55.0%
GCCTTCTCTGCGACCTTCTG+TGG + chr3_4:80175456-80175475 Msa0526330:CDS 60.0%
CCCACAGAAGGTCGCAGAGA+AGG - chr3_4:80175460-80175479 None:intergenic 60.0%
!! TATTTTGGGGGCTGCGTCCC+AGG + chr3_4:80176191-80176210 Msa0526330:intron 60.0%
TCCTGTGGGAGAAGTGACCC+CGG + chr3_4:80177268-80177287 Msa0526330:intron 60.0%
GCCGGGGTCACTTCTCCCAC+AGG - chr3_4:80177272-80177291 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 80173485 80177882 80173485 ID=Msa0526330;Name=Msa0526330
chr3_4 mRNA 80173485 80177882 80173485 ID=Msa0526330-mRNA-1;Parent=Msa0526330;Name=Msa0526330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=237|1|1|1|0.66|0.75|4|395|321
chr3_4 exon 80173485 80173899 80173485 ID=Msa0526330-mRNA-1:exon:24034;Parent=Msa0526330-mRNA-1
chr3_4 exon 80175048 80175607 80175048 ID=Msa0526330-mRNA-1:exon:24035;Parent=Msa0526330-mRNA-1
chr3_4 exon 80176213 80176425 80176213 ID=Msa0526330-mRNA-1:exon:24036;Parent=Msa0526330-mRNA-1
chr3_4 exon 80177473 80177882 80177473 ID=Msa0526330-mRNA-1:exon:24037;Parent=Msa0526330-mRNA-1
chr3_4 five_prime_UTR 80173485 80173721 80173485 ID=Msa0526330-mRNA-1:five_prime_utr;Parent=Msa0526330-mRNA-1
chr3_4 CDS 80173722 80173899 80173722 ID=Msa0526330-mRNA-1:cds;Parent=Msa0526330-mRNA-1
chr3_4 CDS 80175048 80175607 80175048 ID=Msa0526330-mRNA-1:cds;Parent=Msa0526330-mRNA-1
chr3_4 CDS 80176213 80176425 80176213 ID=Msa0526330-mRNA-1:cds;Parent=Msa0526330-mRNA-1
chr3_4 CDS 80177473 80177487 80177473 ID=Msa0526330-mRNA-1:cds;Parent=Msa0526330-mRNA-1
chr3_4 three_prime_UTR 80177488 80177882 80177488 ID=Msa0526330-mRNA-1:three_prime_utr;Parent=Msa0526330-mRNA-1
Gene Sequence

>Msa0526330

ATGGATGATACGGTGCTTGATGATATCATAAAGAAGCTTGTATCAGCGAAGAACGGAAGAACAACGAAGCAAGTTCATCTTACCGAGGCTGATATTCGTCAGCTTTGTACTTCTGCTAAGGAGATCTTTCTCAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGAGATGTCCATGGCCAGTTTTCAGACCTTTTAAGGCTGTTCGAATACGGGGGATACCCACCTGAAGCAAATTACTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTGCTCCTTGCATATAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCATGAATGCGCCTCCATCAATCGTATTTATGGTTTCTACGATGAGTGCAAGAGGAGGTATAATGTTCGTCTCTGGAAGACGTTTACTGATTGCTTTAATTGTTTACCGGTTGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCATGGGGGACTTTCTCCTGAACTTAAAAACTTGGATCAGATACGGAATATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGCGACCTTCTGTGGGCTGATCCTGATAAAGATCTCGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTTACATTTGGGGCTGACAAGGTTGTTGAGTTTCTTGAGCATCATGATCTTGATCTGATATGTAGAGCTCACCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAGTTTGATAATGCCGGTGCTATGATGAGTGTGGATGACTCATTGACATGCTCTTTCCAGATACTGAAGTCTTCCGATAAGAAGGGCAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACTCCACCTCATAAGGGTGGGAAGAATTAA
Protein sequence

>Msa0526330

MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPHKGGKN*