AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527030 MtrunA17_Chr7g0266451 94.191 482 15 3 1 474 1 477 0.0 775
Msa0527030 MtrunA17_Chr4g0026301 66.852 359 110 3 80 435 92 444 1.37e-179 512
Msa0527030 MtrunA17_Chr7g0217261 60.705 369 134 4 76 441 329 689 2.14e-157 463
Msa0527030 MtrunA17_Chr7g0276201 50.847 413 182 8 43 441 44 449 1.07e-133 394
Msa0527030 MtrunA17_Chr8g0372111 31.783 258 164 5 99 349 419 671 1.37e-32 132
Msa0527030 MtrunA17_Chr8g0335981 29.180 305 179 10 59 352 196 474 5.74e-28 117
Msa0527030 MtrunA17_Chr7g0250221 28.369 282 177 9 62 331 162 430 2.67e-20 94.4
Msa0527030 MtrunA17_Chr4g0074711 22.067 358 217 11 92 412 63 395 1.49e-16 81.6
Msa0527030 MtrunA17_Chr4g0044541 24.302 358 226 10 100 418 124 475 5.66e-13 71.2
Msa0527030 MtrunA17_Chr4g0044541 23.438 256 174 9 98 341 34 279 1.42e-12 70.1
Msa0527030 MtrunA17_Chr7g0265341 22.277 404 245 13 100 469 160 528 6.17e-13 71.2
Msa0527030 MtrunA17_Chr2g0288251 21.053 285 192 8 100 358 62 339 6.58e-13 70.1
Msa0527030 MtrunA17_Chr1g0153871 23.418 316 197 10 100 380 99 404 1.75e-12 69.3
Msa0527030 MtrunA17_Chr3g0134141 22.034 236 164 8 98 322 24 250 4.15e-12 68.6
Msa0527030 MtrunA17_Chr1g0153181 23.529 255 175 8 98 341 32 277 6.90e-12 67.8
Msa0527030 MtrunA17_Chr0c09g0493511 21.448 373 234 13 98 433 31 381 3.85e-11 65.1
Msa0527030 MtrunA17_Chr3g0087481 29.412 153 84 5 95 225 57 207 7.22e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527030 AT3G52660.3 54.390 467 196 6 21 474 9 471 3.17e-153 444
Msa0527030 AT3G52660.1 54.390 467 196 6 21 474 9 471 3.17e-153 444
Msa0527030 AT3G52660.2 54.390 467 196 6 21 474 9 471 3.17e-153 444
Msa0527030 AT4G00830.2 50.230 434 195 9 55 474 69 495 1.02e-149 436
Msa0527030 AT4G00830.1 50.230 434 195 9 55 474 69 495 1.02e-149 436
Msa0527030 AT4G00830.6 50.230 434 195 9 55 474 69 495 1.02e-149 436
Msa0527030 AT4G00830.3 49.309 434 191 10 55 474 69 487 9.41e-144 421
Msa0527030 AT4G00830.5 49.309 434 191 10 55 474 69 487 9.41e-144 421
Msa0527030 AT4G00830.4 48.848 434 201 9 55 474 69 495 2.76e-143 420
Msa0527030 AT5G28390.1 41.423 239 79 4 238 474 1 180 3.25e-46 159
Msa0527030 AT2G44710.4 27.246 345 202 11 52 371 101 421 4.98e-24 106
Msa0527030 AT2G44710.2 27.564 312 191 9 52 352 186 473 9.40e-24 105
Msa0527030 AT2G44710.1 27.564 312 191 9 52 352 186 473 9.40e-24 105
Msa0527030 AT2G23350.1 23.560 382 241 14 100 450 136 497 1.88e-15 79.3
Msa0527030 AT2G23350.1 24.016 254 169 9 100 339 48 291 4.88e-12 68.6
Msa0527030 AT1G49760.1 24.696 247 164 9 98 332 45 281 2.05e-13 73.2
Msa0527030 AT1G49760.2 24.696 247 164 9 98 332 45 281 2.05e-13 73.2
Msa0527030 AT4G34110.1 23.967 363 223 13 100 419 126 478 1.16e-12 70.5
Msa0527030 AT5G54900.1 22.601 323 190 15 100 387 62 359 1.32e-12 69.7
Msa0527030 AT1G71770.1 23.243 370 226 16 100 420 148 508 4.55e-11 65.9
Msa0527030 AT1G71770.2 23.243 370 226 16 100 420 148 508 4.55e-11 65.9

Find 184 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTCTTTGTATGCTTC+TGG 0.169584 3_4:+81192331 Msa0527030:five_prime_UTR
CCGAGTTTCCCAGAAAATTT+TGG 0.176146 3_4:-81192090 None:intergenic
CCCTGGTGAGTCTGAATTTC+GGG 0.180213 3_4:-81192439 None:intergenic
ATTCTACTTGGTGCCAATTT+TGG 0.211528 3_4:+81197118 Msa0527030:three_prime_UTR
AGCTCATAGGATAGCATATT+TGG 0.228573 3_4:-81191889 None:intergenic
CCCCTGGTGAGTCTGAATTT+CGG 0.240262 3_4:-81192440 None:intergenic
CATGGTTTGATAGGAGAATA+AGG 0.244160 3_4:-81191850 None:intergenic
GACAAAGGAATTAGCATCTA+AGG 0.262798 3_4:+81192913 Msa0527030:CDS
AGGATAGCATATTTGGATAA+TGG 0.279400 3_4:-81191882 None:intergenic
AGCCTCATCTTCTTCATCTA+AGG 0.282163 3_4:-81192631 None:intergenic
TGCTAATTCCTTTGTCTTGA+AGG 0.283256 3_4:-81192906 None:intergenic
AATAAATTGCTTCCCATCAT+AGG 0.285536 3_4:-81196939 None:intergenic
TCTTCTACAGTCCACTCTTT+AGG 0.290635 3_4:-81193221 None:intergenic
CTCAACTAGTTCAAACAAAT+AGG 0.293611 3_4:+81197022 Msa0527030:three_prime_UTR
TTAAACTAGCCTGCCAAAAT+TGG 0.297730 3_4:-81197131 None:intergenic
TAGGAGAATAAGGGTGTGTT+TGG 0.298373 3_4:-81191840 None:intergenic
GGTATGGTTGGAGGTGGATA+TGG 0.314554 3_4:+81195817 Msa0527030:CDS
TAGTTATACCACAATTTAAC+TGG 0.334444 3_4:+81192067 Msa0527030:five_prime_UTR
TGGTATAAAACTCATGTAAT+AGG 0.334579 3_4:-81193661 None:intergenic
ATCTAGAAAAGCAAGCTTGC+AGG 0.339804 3_4:-81192378 None:intergenic
GGATAGCATATTTGGATAAT+GGG 0.351704 3_4:-81191881 None:intergenic
CTCCTACCATGCCGGGATAC+TGG 0.355913 3_4:-81196676 None:intergenic
GGTGCTGTTGGTGCAGGATA+TGG 0.366546 3_4:+81195838 Msa0527030:CDS
ATCGGCCATGACCACGATTA+CGG 0.369175 3_4:-81196744 None:intergenic
CACAGAGTTCTAGCCGTAAT+CGG 0.371058 3_4:+81193487 Msa0527030:CDS
TATGAGAAAATTTGCAGAAC+AGG 0.371907 3_4:+81196836 Msa0527030:three_prime_UTR
TTCTAGATTCATAGAATGCC+TGG 0.372466 3_4:+81192393 Msa0527030:exon
AACATACATAATTACAATAA+AGG 0.374047 3_4:-81191948 None:intergenic
TCAACTAGTTCAAACAAATA+GGG 0.391746 3_4:+81197023 Msa0527030:three_prime_UTR
GTTAAGCATCGGTTATTCAT+TGG 0.392291 3_4:+81193191 Msa0527030:CDS
GGTTGGCCCTGGAGTCATTT+CGG 0.392811 3_4:+81193265 Msa0527030:CDS
TTTGTTGCTATGCTACTCCT+TGG 0.399721 3_4:+81192223 Msa0527030:five_prime_UTR
TACATTAGTAAGGATTATAT+CGG 0.403248 3_4:-81196762 None:intergenic
TATCCACCTCCTCTTGGTTA+TGG 0.404216 3_4:+81195796 Msa0527030:CDS
CATTTCGGTGGAACTGTTGA+AGG 0.404786 3_4:+81193280 Msa0527030:CDS
GTTGCAAACCATGGTTTGAT+AGG 0.406627 3_4:-81191859 None:intergenic
CTTCTTGCGCTTCCACCTCA+TGG 0.410083 3_4:+81192675 Msa0527030:CDS
GGTGGAGGAAGAAGTGGAAG+AGG 0.422190 3_4:+81192572 Msa0527030:CDS
TAGGAACAATTACATTAGTA+AGG 0.425175 3_4:-81196772 None:intergenic
GTTGAACAACTCTGAATTCA+AGG 0.433692 3_4:+81192946 Msa0527030:CDS
CTTGGTTATGGTATGGTTGG+AGG 0.434215 3_4:+81195808 Msa0527030:CDS
GTATGAAGAAGTAGAGGTGG+AGG 0.436885 3_4:+81192557 Msa0527030:CDS
TGCATAGGTAAGGGTTATGA+AGG 0.438139 3_4:+81192853 Msa0527030:intron
GGACAAGAAAAGAGCAGATA+TGG 0.438969 3_4:+81195516 Msa0527030:CDS
TCTTACTCTGCTATTCCATC+TGG 0.438998 3_4:+81192278 Msa0527030:five_prime_UTR
GGTGAGCAGGTAGATCTTGA+TGG 0.439005 3_4:+81192495 Msa0527030:CDS
ACAGAGTTCTAGCCGTAATC+GGG 0.441429 3_4:+81193488 Msa0527030:CDS
CCTGCGTATCCACCTCCTCT+TGG 0.442592 3_4:+81195790 Msa0527030:CDS
ACCTCCTCTTGGTTATGGTA+TGG 0.445868 3_4:+81195801 Msa0527030:CDS
TAAAAGCAAATCCCCGATTA+CGG 0.448099 3_4:-81193500 None:intergenic
TTGTGGTATAACTATTTGTC+AGG 0.453568 3_4:-81192058 None:intergenic
TATCATACAATGAAGCTCAT+AGG 0.455319 3_4:-81191902 None:intergenic
AGAGGATAACAATGCTCAAA+AGG 0.456882 3_4:-81192158 None:intergenic
ACTAATGTAATTGTTCCTAC+TGG 0.458808 3_4:+81196776 Msa0527030:exon
CCTCTTGGTTATGGTATGGT+TGG 0.461631 3_4:+81195805 Msa0527030:CDS
GTTGTTGCCAAGGTTGGCCC+TGG 0.464947 3_4:+81193254 Msa0527030:CDS
AAAGAGCTGTTTGAACATCA+TGG 0.465220 3_4:+81195456 Msa0527030:CDS
GGAGGTGGATATGGTGCTGT+TGG 0.465667 3_4:+81195826 Msa0527030:CDS
ATGGTTCAGAGGTCTACATT+GGG 0.465780 3_4:+81192694 Msa0527030:CDS
GGTGCAGGATATGGTGCTGC+TGG 0.466144 3_4:+81195847 Msa0527030:CDS
AGTAGAGGTGGAGGAAGAAG+TGG 0.470019 3_4:+81192566 Msa0527030:CDS
AGGAGAATAAGGGTGTGTTT+GGG 0.470084 3_4:-81191839 None:intergenic
AGTGGAAGAGGAAGAAGAAG+AGG 0.471511 3_4:+81192584 Msa0527030:CDS
CAAGCAGATCAGAAGTCATC+TGG 0.473781 3_4:+81195736 Msa0527030:CDS
ACGGAGAAGTATGAAATTGA+TGG 0.475658 3_4:+81195588 Msa0527030:CDS
ATGCTTGTGCAGAATATTCA+AGG 0.479524 3_4:+81193538 Msa0527030:CDS
GGTCACAAAAGCATAACCTT+TGG 0.479540 3_4:-81192885 None:intergenic
GAATGGACCAGGTCAAACTT+TGG 0.480376 3_4:+81195693 Msa0527030:intron
CATCTGTAGGCTTAGAGCAC+TGG 0.483180 3_4:+81196984 Msa0527030:three_prime_UTR
GCCTCATCTTCTTCATCTAA+GGG 0.486530 3_4:-81192630 None:intergenic
TGAATCATCATCATCCTCTC+AGG 0.490075 3_4:+81193635 Msa0527030:CDS
ACCCACAGATTCTGGTGAGC+AGG 0.493614 3_4:+81192482 Msa0527030:CDS
GGTTATGGTATGGTTGGAGG+TGG 0.495269 3_4:+81195811 Msa0527030:CDS
AAGAAGGTTGTTGCCAAGGT+TGG 0.496072 3_4:+81193248 Msa0527030:CDS
GCAACAAAAGTAAGAAAGAC+AGG 0.496344 3_4:-81192208 None:intergenic
TGTGTTTGGGAGTTGAATTG+TGG 0.496480 3_4:-81191826 None:intergenic
GGCATCATTGTCATGCCAGC+AGG 0.499937 3_4:-81196445 None:intergenic
ACATATGCAATCCTTCCATC+TGG 0.499994 3_4:-81196478 None:intergenic
AAGAAGAGAGTTTGCAAATG+TGG 0.500154 3_4:-81192318 None:intergenic
GCTCTCCCTCCTGCTAAAGC+TGG 0.501443 3_4:+81195495 Msa0527030:CDS
CACCACTACTCCTACCATGC+CGG 0.502610 3_4:-81196684 None:intergenic
TGAGTATGAAGAAGTAGAGG+TGG 0.503776 3_4:+81192554 Msa0527030:CDS
GGTCCGGGAGCAACTCCTGC+TGG 0.509565 3_4:+81196430 Msa0527030:CDS
AGAAGAAGAGGAAGAAGTAG+AGG 0.510075 3_4:+81192596 Msa0527030:CDS
ACCACTACTCCTACCATGCC+GGG 0.514963 3_4:-81196683 None:intergenic
TTTAAGTCTAAGATTCTACT+TGG 0.516185 3_4:+81197106 Msa0527030:three_prime_UTR
GTGAGCAGGTAGATCTTGAT+GGG 0.522099 3_4:+81192496 Msa0527030:CDS
AGTTCCACCGAAATGACTCC+AGG 0.523128 3_4:-81193272 None:intergenic
TGATAGGTCAAGTGCAATGA+AGG 0.523880 3_4:+81195554 Msa0527030:CDS
GGATATGGTGCTGTTGGTGC+AGG 0.526774 3_4:+81195832 Msa0527030:CDS
TGTGACTGTAGGCAACAGCC+AGG 0.530335 3_4:+81196631 Msa0527030:intron
CTTCCATCTGGTAAAAGCAT+TGG 0.530824 3_4:-81196466 None:intergenic
AGCTTGCAGGGCAACTATGA+AGG 0.533010 3_4:-81192365 None:intergenic
GATGATGATTCAGAATTCCT+CGG 0.535591 3_4:-81193624 None:intergenic
ATAACGATGCAATAGTGAGC+TGG 0.537030 3_4:+81193595 Msa0527030:CDS
TCTTGTCCAGCTTTAGCAGG+AGG 0.538943 3_4:-81195501 None:intergenic
AATGACTCCAGGGCCAACCT+TGG 0.541179 3_4:-81193261 None:intergenic
ATGATGATTCAGAATTCCTC+GGG 0.542091 3_4:-81193623 None:intergenic
TACCTGCTCACCAGAATCTG+TGG 0.544070 3_4:-81192484 None:intergenic
ATGCCAGCAGGAGTTGCTCC+CGG 0.544143 3_4:-81196433 None:intergenic
CATGGTTCAGAGGTCTACAT+TGG 0.544508 3_4:+81192693 Msa0527030:CDS
GTTTGGGAGTTGAATTGTGG+AGG 0.544672 3_4:-81191823 None:intergenic
TATGAAGAAGGTTGTTGCCA+AGG 0.545814 3_4:+81193244 Msa0527030:CDS
CTTGTCCAGCTTTAGCAGGA+GGG 0.546775 3_4:-81195500 None:intergenic
TCTAGATTCATAGAATGCCT+GGG 0.547799 3_4:+81192394 Msa0527030:exon
TCCCATCATAGGAAAAGATA+AGG 0.548438 3_4:-81196928 None:intergenic
GATGACTTCTGATCTGCTTG+TGG 0.549430 3_4:-81195733 None:intergenic
AGTTGAGTATGAAGAAGTAG+AGG 0.551022 3_4:+81192551 Msa0527030:CDS
AAAATTTGCAGAACAGGCAT+AGG 0.551199 3_4:+81196842 Msa0527030:three_prime_UTR
TTTGGGAGTTGAATTGTGGA+GGG 0.551382 3_4:-81191822 None:intergenic
TTGTCAATCTGTGGGAGAAG+TGG 0.551925 3_4:+81192758 Msa0527030:CDS
ATGCTCCATCACCAGTATCC+CGG 0.551954 3_4:+81196665 Msa0527030:CDS
GACTGTAGAAGATATGAAGA+AGG 0.552294 3_4:+81193232 Msa0527030:CDS
AATGTGCAGCCACTGATGTA+TGG 0.552663 3_4:+81196409 Msa0527030:intron
GCATAGGTAAGGGTTATGAA+GGG 0.554101 3_4:+81192854 Msa0527030:intron
AATGAAGGCATTGAAGAATA+CGG 0.554131 3_4:+81195569 Msa0527030:CDS
TTGGTAATGTTCCTAAAGAG+TGG 0.554375 3_4:+81193210 Msa0527030:CDS
ATGGTTTGATAGGAGAATAA+GGG 0.554556 3_4:-81191849 None:intergenic
AACCGATGCTTAACTTGAGA+TGG 0.558623 3_4:-81193182 None:intergenic
CCATGCCGGGATACTGGTGA+TGG 0.560019 3_4:-81196670 None:intergenic
CAGTGCTCTAAGCCTACAGA+TGG 0.560481 3_4:-81196983 None:intergenic
AGTAGTGGTGTCAGCTCAAG+TGG 0.560864 3_4:+81196697 Msa0527030:CDS
CTTATTCTCCTATCAAACCA+TGG 0.561346 3_4:+81191851 Msa0527030:five_prime_UTR
AATAACCGTAATCGTGGTCA+TGG 0.562058 3_4:+81196739 Msa0527030:CDS
TGGTGCTGCTGGCTTTGCAC+CGG 0.565428 3_4:+81195858 Msa0527030:CDS
TCTAGAAAAGCAAGCTTGCA+GGG 0.565994 3_4:-81192377 None:intergenic
ACTCCTTGGTCCATACCTCA+TGG 0.567908 3_4:+81192237 Msa0527030:five_prime_UTR
TAACGATGCAATAGTGAGCT+GGG 0.568267 3_4:+81193596 Msa0527030:CDS
TGAAACTGTTCCATGAGGTA+TGG 0.570420 3_4:-81192247 None:intergenic
CACCATCTCAAGTTAAGCAT+CGG 0.570455 3_4:+81193180 Msa0527030:CDS
GCAGCCACTGATGTATGGTC+CGG 0.571930 3_4:+81196414 Msa0527030:intron
ATGTGGAAAGGTGGAAACAA+TGG 0.573479 3_4:-81192301 None:intergenic
TCATGGAAAGATCACAAAAG+TGG 0.575285 3_4:+81195473 Msa0527030:CDS
AATATACACAGAGGAAGAGA+GGG 0.575909 3_4:-81192030 None:intergenic
CATAGGTAAGGGTTATGAAG+GGG 0.579849 3_4:+81192855 Msa0527030:intron
AAATATACACAGAGGAAGAG+AGG 0.581064 3_4:-81192031 None:intergenic
AGTTTGCAAATGTGGAAAGG+TGG 0.581122 3_4:-81192310 None:intergenic
ATACCATAACCAAGAGGAGG+TGG 0.583928 3_4:-81195799 None:intergenic
ATCTGTGGGAGAAGTGGCAG+AGG 0.585652 3_4:+81192764 Msa0527030:CDS
CCAAGAGGAGGTGGATACGC+AGG 0.593051 3_4:-81195790 None:intergenic
TCCCGGCATGGTAGGAGTAG+TGG 0.593910 3_4:+81196682 Msa0527030:CDS
CAGCCACTGATGTATGGTCC+GGG 0.596285 3_4:+81196415 Msa0527030:intron
GCCCGAAATTCAGACTCACC+AGG 0.598019 3_4:+81192438 Msa0527030:CDS
GCCCTTAGATGAAGAAGATG+AGG 0.598683 3_4:+81192629 Msa0527030:CDS
GAGAGTTTGCAAATGTGGAA+AGG 0.598965 3_4:-81192313 None:intergenic
CAACTAGTTCAAACAAATAG+GGG 0.600096 3_4:+81197024 Msa0527030:three_prime_UTR
TGATGGGGACAATGATCAAG+AGG 0.603621 3_4:+81192512 Msa0527030:CDS
AGGTGGAAACAATGGCCAGA+TGG 0.603883 3_4:-81192293 None:intergenic
AGAGCACTGGCGATGACTCA+CGG 0.605652 3_4:+81196997 Msa0527030:three_prime_UTR
CCCGAAATTCAGACTCACCA+GGG 0.606202 3_4:+81192439 Msa0527030:CDS
GGATAATGGGTTGCAAACCA+TGG 0.607154 3_4:-81191868 None:intergenic
CCGAAATTCAGACTCACCAG+GGG 0.609779 3_4:+81192440 Msa0527030:CDS
GCTTCCACCTCATGGTTCAG+AGG 0.610025 3_4:+81192683 Msa0527030:CDS
CACCAGTATCCCGGCATGGT+AGG 0.611902 3_4:+81196674 Msa0527030:CDS
GGAGCATGTTGTTGAAAACC+TGG 0.612025 3_4:-81196649 None:intergenic
ACCTGCTCACCAGAATCTGT+GGG 0.613571 3_4:-81192483 None:intergenic
ATAATCTTACTCCCATCTGT+AGG 0.614931 3_4:+81196971 Msa0527030:three_prime_UTR
TAGTGAGCTGGGCTGACCCG+AGG 0.618827 3_4:+81193607 Msa0527030:CDS
AACGATAATAACCGTAATCG+TGG 0.621986 3_4:+81196733 Msa0527030:CDS
TGGCCCTGGAGTCATTTCGG+TGG 0.622046 3_4:+81193268 Msa0527030:CDS
ATTAGCATCTAAGGCTCTCG+AGG 0.629832 3_4:+81192922 Msa0527030:CDS
CACAGAGGAAGAGAGGGGAA+AGG 0.639745 3_4:-81192024 None:intergenic
CCATCACCAGTATCCCGGCA+TGG 0.641754 3_4:+81196670 Msa0527030:CDS
TTGATTGAAACTGTTCCATG+AGG 0.645308 3_4:-81192252 None:intergenic
TGGTTCAGAGGTCTACATTG+GGG 0.645914 3_4:+81192695 Msa0527030:CDS
CAGAGTTCTAGCCGTAATCG+GGG 0.647049 3_4:+81193489 Msa0527030:CDS
CAAAGCCGAAAATTAATCTG+TGG 0.647057 3_4:+81196809 Msa0527030:three_prime_UTR
CGATTACGGCTAGAACTCTG+TGG 0.668127 3_4:-81193486 None:intergenic
GTTCCACCGAAATGACTCCA+GGG 0.672546 3_4:-81193271 None:intergenic
TAGACCTCTGAACCATGAGG+TGG 0.673055 3_4:-81192687 None:intergenic
AGTGCTCTAAGCCTACAGAT+GGG 0.674526 3_4:-81196982 None:intergenic
GGTTCAGAGGTCTACATTGG+GGG 0.681072 3_4:+81192696 Msa0527030:CDS
ACCATACCATAACCAAGAGG+AGG 0.682760 3_4:-81195802 None:intergenic
GTTCCATGAGGTATGGACCA+AGG 0.688815 3_4:-81192240 None:intergenic
TGATCAAGAGGAATCAAGCG+AGG 0.690783 3_4:+81192524 Msa0527030:CDS
GCTCCCGGACCATACATCAG+TGG 0.700475 3_4:-81196418 None:intergenic
ATGAAGGGGAAAGAAGCCAA+AGG 0.709242 3_4:+81192869 Msa0527030:CDS
CATGTAATAGGTCACCTGAG+AGG 0.716127 3_4:-81193649 None:intergenic
ATATACACAGAGGAAGAGAG+GGG 0.724710 3_4:-81192029 None:intergenic
TGAGCAGGTAGATCTTGATG+GGG 0.733370 3_4:+81192497 Msa0527030:CDS
ATGTAGACCTCTGAACCATG+AGG 0.739451 3_4:-81192690 None:intergenic
CCAACCATACCATAACCAAG+AGG 0.748224 3_4:-81195805 None:intergenic
CGAAATTCAGACTCACCAGG+GGG 0.756851 3_4:+81192441 Msa0527030:CDS
CAGGAGACAAATATACACAG+AGG 0.776453 3_4:-81192039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATACATAATTACAATAA+AGG - chr3_4:81191951-81191970 None:intergenic 15.0%
!! ACATATAATAGAAAAATTGT+TGG - chr3_4:81193310-81193329 None:intergenic 15.0%
!! ATAGTTTAAGTAACAAAAAA+AGG - chr3_4:81193371-81193390 None:intergenic 15.0%
!!! AGAAGTAACTTTTTTTTTTA+TGG - chr3_4:81194464-81194483 None:intergenic 15.0%
!! GAATAAATTTAGAAACAAAT+TGG + chr3_4:81194959-81194978 Msa0527030:intron 15.0%
!! AAAGAAATCAATAATTCATT+AGG - chr3_4:81195309-81195328 None:intergenic 15.0%
!!! AATTTTTATGTTTCTTCTAA+AGG - chr3_4:81196006-81196025 None:intergenic 15.0%
!! ATTCTATTGAATATCTTTAT+GGG + chr3_4:81196280-81196299 Msa0527030:intron 15.0%
!!! TTTTATTCTTGTAATTTGTA+AGG + chr3_4:81197063-81197082 Msa0527030:three_prime_UTR 15.0%
!!! TTTTTTCATTTATAAACGTG+TGG + chr3_4:81191974-81191993 Msa0527030:five_prime_UTR 20.0%
!!! AAACTTCTGAAAAAGATTTA+AGG + chr3_4:81192730-81192749 Msa0527030:CDS 20.0%
!!! AACTTCTGAAAAAGATTTAA+GGG + chr3_4:81192731-81192750 Msa0527030:CDS 20.0%
!!! TTGTCATTTTCTGTAATATT+TGG + chr3_4:81192989-81193008 Msa0527030:intron 20.0%
!!! AAATATTTTATCCATTAAGC+TGG + chr3_4:81193087-81193106 Msa0527030:intron 20.0%
!! TTAAGTAACAAAAAAAGGAA+AGG - chr3_4:81193366-81193385 None:intergenic 20.0%
!! AATGTACAAAATTGAAAGTT+GGG - chr3_4:81194003-81194022 None:intergenic 20.0%
!! TAATGTACAAAATTGAAAGT+TGG - chr3_4:81194004-81194023 None:intergenic 20.0%
!!! ATTTTGTACATTACCATAAA+TGG + chr3_4:81194011-81194030 Msa0527030:intron 20.0%
!! TTGAAATGTTTAAACAAACA+CGG + chr3_4:81194678-81194697 Msa0527030:intron 20.0%
!! TATTAAGGTTAAGGTAAAAA+TGG - chr3_4:81194995-81195014 None:intergenic 20.0%
!!! TTTTACCTTAACCTTAATAA+TGG + chr3_4:81194996-81195015 Msa0527030:intron 20.0%
!! TCATTAATCTCAAAAAAATG+AGG + chr3_4:81195921-81195940 Msa0527030:intron 20.0%
!! CATTAATCTCAAAAAAATGA+GGG + chr3_4:81195922-81195941 Msa0527030:intron 20.0%
!! CATTCTATTGAATATCTTTA+TGG + chr3_4:81196279-81196298 Msa0527030:intron 20.0%
!! TTCTATTGAATATCTTTATG+GGG + chr3_4:81196281-81196300 Msa0527030:intron 20.0%
!! TACATTAGTAAGGATTATAT+CGG - chr3_4:81196765-81196784 None:intergenic 20.0%
!! AATAAAAAAAACTTCACTCA+CGG - chr3_4:81197050-81197069 None:intergenic 20.0%
! TAGTTATACCACAATTTAAC+TGG + chr3_4:81192067-81192086 Msa0527030:five_prime_UTR 25.0%
! ATTCTGAATGAAAAATCAAG+AGG - chr3_4:81192179-81192198 None:intergenic 25.0%
!! TCATTTTCTGTAATATTTGG+TGG + chr3_4:81192992-81193011 Msa0527030:intron 25.0%
! AACTGATTATTAACAAGTCA+TGG + chr3_4:81193025-81193044 Msa0527030:intron 25.0%
! TGGTATAAAACTCATGTAAT+AGG - chr3_4:81193664-81193683 None:intergenic 25.0%
!! TTTTTCTCTTTATTACCTTG+CGG - chr3_4:81193720-81193739 None:intergenic 25.0%
! AAGAGAAAAAACTTAAGTGT+AGG + chr3_4:81193730-81193749 Msa0527030:intron 25.0%
!! TGTTGGAAATGTTTGAAATA+TGG - chr3_4:81193820-81193839 None:intergenic 25.0%
! AAGTAAAATGGAAGTAGAAT+AGG - chr3_4:81193849-81193868 None:intergenic 25.0%
! TAGGTTAAGATTGAAAAAAG+GGG - chr3_4:81193879-81193898 None:intergenic 25.0%
! CTAGGTTAAGATTGAAAAAA+GGG - chr3_4:81193880-81193899 None:intergenic 25.0%
! TCTAGGTTAAGATTGAAAAA+AGG - chr3_4:81193881-81193900 None:intergenic 25.0%
!! ATGTAATTTTCAAAATGCAC+AGG + chr3_4:81193970-81193989 Msa0527030:intron 25.0%
! ATGTACAAAATTGAAAGTTG+GGG - chr3_4:81194002-81194021 None:intergenic 25.0%
!!! TCAATTTTTGGACAAAAATC+AGG + chr3_4:81194052-81194071 Msa0527030:intron 25.0%
!! ATGTGACAAATTGAAGTTTT+GGG + chr3_4:81194371-81194390 Msa0527030:intron 25.0%
! ATTCTTCCATTTATTGAAAG+TGG + chr3_4:81194396-81194415 Msa0527030:intron 25.0%
!! ATACTCTAATGAGATGTTTT+AGG - chr3_4:81194788-81194807 None:intergenic 25.0%
! TTACATGATCTTAATTAGCA+TGG + chr3_4:81195039-81195058 Msa0527030:intron 25.0%
! AATAATTCATTAGGAACAAC+AGG - chr3_4:81195300-81195319 None:intergenic 25.0%
! TGGAAAACAGTATTCAAAAA+GGG - chr3_4:81195626-81195645 None:intergenic 25.0%
! TTGGAAAACAGTATTCAAAA+AGG - chr3_4:81195627-81195646 None:intergenic 25.0%
! TGTCATTAAGAAACATAGAT+TGG - chr3_4:81195646-81195665 None:intergenic 25.0%
! CAAAAAAGACTAAAACTAGA+AGG - chr3_4:81195898-81195917 None:intergenic 25.0%
! TTTCTTCAATTGATTGTTGA+TGG + chr3_4:81196126-81196145 Msa0527030:intron 25.0%
! TTCTTCAATTGATTGTTGAT+GGG + chr3_4:81196127-81196146 Msa0527030:intron 25.0%
! TTAAGTGTTCGAAATTTCAA+TGG + chr3_4:81196243-81196262 Msa0527030:intron 25.0%
! TTATTAAGCCTAAAAGAACT+TGG + chr3_4:81196336-81196355 Msa0527030:intron 25.0%
! ATGTATTGTAAGTTTCATCT+TGG + chr3_4:81196497-81196516 Msa0527030:intron 25.0%
! TAGGAACAATTACATTAGTA+AGG - chr3_4:81196775-81196794 None:intergenic 25.0%
! AGATAAGGTTAAAAAATGCA+AGG - chr3_4:81196916-81196935 None:intergenic 25.0%
! TCAACTAGTTCAAACAAATA+GGG + chr3_4:81197023-81197042 Msa0527030:three_prime_UTR 25.0%
!! TTTAAGTCTAAGATTCTACT+TGG + chr3_4:81197106-81197125 Msa0527030:three_prime_UTR 25.0%
ATGGTTTGATAGGAGAATAA+GGG - chr3_4:81191852-81191871 None:intergenic 30.0%
GGATAGCATATTTGGATAAT+GGG - chr3_4:81191884-81191903 None:intergenic 30.0%
AGGATAGCATATTTGGATAA+TGG - chr3_4:81191885-81191904 None:intergenic 30.0%
TATCATACAATGAAGCTCAT+AGG - chr3_4:81191905-81191924 None:intergenic 30.0%
TTGTGGTATAACTATTTGTC+AGG - chr3_4:81192061-81192080 None:intergenic 30.0%
!! AATTTTGGCCAGTTAAATTG+TGG - chr3_4:81192078-81192097 None:intergenic 30.0%
! TTTAACTGGCCAAAATTTTC+TGG + chr3_4:81192081-81192100 Msa0527030:five_prime_UTR 30.0%
! TTAACTGGCCAAAATTTTCT+GGG + chr3_4:81192082-81192101 Msa0527030:five_prime_UTR 30.0%
TTTAGACAGTCATGTAAAAG+GGG - chr3_4:81192821-81192840 None:intergenic 30.0%
GTTTAGACAGTCATGTAAAA+GGG - chr3_4:81192822-81192841 None:intergenic 30.0%
TTACCTATGCAAAAGTCAAT+CGG - chr3_4:81192844-81192863 None:intergenic 30.0%
!! ATTGACTTTTGCATAGGTAA+GGG + chr3_4:81192844-81192863 Msa0527030:intron 30.0%
!! ACTCTGAATTCAAGGTATTT+TGG + chr3_4:81192954-81192973 Msa0527030:intron 30.0%
TAAATATGAAACAGCTAGCT+AGG - chr3_4:81193460-81193479 None:intergenic 30.0%
! TTTTCTCTTTATTACCTTGC+GGG - chr3_4:81193719-81193738 None:intergenic 30.0%
AATATGGCAGTGGAATAATA+TGG - chr3_4:81193804-81193823 None:intergenic 30.0%
! AAATGTTTGAAATATGGCAG+TGG - chr3_4:81193814-81193833 None:intergenic 30.0%
AGTAGAATAGGTTATGTTGT+TGG - chr3_4:81193837-81193856 None:intergenic 30.0%
TTAAGATTGAAAAAAGGGGT+GGG - chr3_4:81193875-81193894 None:intergenic 30.0%
!!! TTTTTTTCATGTCAAGTGAC+TGG - chr3_4:81194083-81194102 None:intergenic 30.0%
TCACTTGACATGAAAAAAAG+AGG + chr3_4:81194084-81194103 Msa0527030:intron 30.0%
! GAAAAAAAGAGGTACATGAA+TGG + chr3_4:81194095-81194114 Msa0527030:intron 30.0%
!! TGGGTTTTATAATGGTACAT+TGG - chr3_4:81194139-81194158 None:intergenic 30.0%
!! TGTCAAAGTGGGTTTTATAA+TGG - chr3_4:81194147-81194166 None:intergenic 30.0%
!! TTTTTCAAAGCTCAGTGTAA+GGG - chr3_4:81194174-81194193 None:intergenic 30.0%
!! ATTTTTCAAAGCTCAGTGTA+AGG - chr3_4:81194175-81194194 None:intergenic 30.0%
ACTTCTTCTAATACGTATCA+TGG + chr3_4:81194249-81194268 Msa0527030:intron 30.0%
! CATGTGACAAATTGAAGTTT+TGG + chr3_4:81194370-81194389 Msa0527030:intron 30.0%
AGAAATAATTTGACTGCGTA+TGG - chr3_4:81194598-81194617 None:intergenic 30.0%
AAGAAAGCTATTTAGACTAC+AGG + chr3_4:81194870-81194889 Msa0527030:intron 30.0%
AACAGAGCTTAGACATAAAA+AGG + chr3_4:81194893-81194912 Msa0527030:intron 30.0%
GTGATCCATTATTAAGGTTA+AGG - chr3_4:81195004-81195023 None:intergenic 30.0%
TTACTGGTGATCCATTATTA+AGG - chr3_4:81195010-81195029 None:intergenic 30.0%
CTAATTAAGATCATGTAACC+TGG - chr3_4:81195037-81195056 None:intergenic 30.0%
TTAATGTTGGCAACAAAATG+AGG - chr3_4:81195161-81195180 None:intergenic 30.0%
CAGAAAGCAAACATTAATGT+TGG - chr3_4:81195174-81195193 None:intergenic 30.0%
!! AATGAAGGCATTGAAGAATA+CGG + chr3_4:81195569-81195588 Msa0527030:CDS 30.0%
AATCTCAAAAAAATGAGGGT+TGG + chr3_4:81195926-81195945 Msa0527030:intron 30.0%
ATCTCAAAAAAATGAGGGTT+GGG + chr3_4:81195927-81195946 Msa0527030:intron 30.0%
! TCGTGAAAATTTTATCCAGT+TGG + chr3_4:81196037-81196056 Msa0527030:intron 30.0%
! CGTGAAAATTTTATCCAGTT+GGG + chr3_4:81196038-81196057 Msa0527030:intron 30.0%
TTGAACTGTATCAATTTCAC+TGG + chr3_4:81196072-81196091 Msa0527030:intron 30.0%
AAGAGGTTAACATCAATTCT+TGG + chr3_4:81196180-81196199 Msa0527030:intron 30.0%
TATTTGTTTATGCTCTTGCA+TGG + chr3_4:81196534-81196553 Msa0527030:intron 30.0%
TTGTTTCACTAGCATAACAA+CGG + chr3_4:81196575-81196594 Msa0527030:intron 30.0%
GATAGAAACTCAACTATAGA+TGG - chr3_4:81196603-81196622 None:intergenic 30.0%
ACTAATGTAATTGTTCCTAC+TGG + chr3_4:81196776-81196795 Msa0527030:exon 30.0%
! ACAGATTAATTTTCGGCTTT+GGG - chr3_4:81196810-81196829 None:intergenic 30.0%
! ACATGCCACAGATTAATTTT+CGG - chr3_4:81196817-81196836 None:intergenic 30.0%
TATGAGAAAATTTGCAGAAC+AGG + chr3_4:81196836-81196855 Msa0527030:three_prime_UTR 30.0%
! AACCTTATCTTTTCCTATGA+TGG + chr3_4:81196926-81196945 Msa0527030:three_prime_UTR 30.0%
! ACCTTATCTTTTCCTATGAT+GGG + chr3_4:81196927-81196946 Msa0527030:three_prime_UTR 30.0%
AATAAATTGCTTCCCATCAT+AGG - chr3_4:81196942-81196961 None:intergenic 30.0%
CTCAACTAGTTCAAACAAAT+AGG + chr3_4:81197022-81197041 Msa0527030:three_prime_UTR 30.0%
CAACTAGTTCAAACAAATAG+GGG + chr3_4:81197024-81197043 Msa0527030:three_prime_UTR 30.0%
CATGGTTTGATAGGAGAATA+AGG - chr3_4:81191853-81191872 None:intergenic 35.0%
CTTATTCTCCTATCAAACCA+TGG + chr3_4:81191851-81191870 Msa0527030:five_prime_UTR 35.0%
AGCTCATAGGATAGCATATT+TGG - chr3_4:81191892-81191911 None:intergenic 35.0%
AATATACACAGAGGAAGAGA+GGG - chr3_4:81192033-81192052 None:intergenic 35.0%
AAATATACACAGAGGAAGAG+AGG - chr3_4:81192034-81192053 None:intergenic 35.0%
!! CCAAAATTTTCTGGGAAACT+CGG + chr3_4:81192090-81192109 Msa0527030:five_prime_UTR 35.0%
AGAGGATAACAATGCTCAAA+AGG - chr3_4:81192161-81192180 None:intergenic 35.0%
GCAACAAAAGTAAGAAAGAC+AGG - chr3_4:81192211-81192230 None:intergenic 35.0%
TTGATTGAAACTGTTCCATG+AGG - chr3_4:81192255-81192274 None:intergenic 35.0%
AAGAAGAGAGTTTGCAAATG+TGG - chr3_4:81192321-81192340 None:intergenic 35.0%
TTCTAGATTCATAGAATGCC+TGG + chr3_4:81192393-81192412 Msa0527030:exon 35.0%
TCTAGATTCATAGAATGCCT+GGG + chr3_4:81192394-81192413 Msa0527030:exon 35.0%
AGTTGAGTATGAAGAAGTAG+AGG + chr3_4:81192551-81192570 Msa0527030:CDS 35.0%
!!! TCTTTTTCAGAAGTTTCGTG+AGG - chr3_4:81192726-81192745 None:intergenic 35.0%
TTAGACAGTCATGTAAAAGG+GGG - chr3_4:81192820-81192839 None:intergenic 35.0%
GGTTTAGACAGTCATGTAAA+AGG - chr3_4:81192823-81192842 None:intergenic 35.0%
!! AAACCGATTGACTTTTGCAT+AGG + chr3_4:81192838-81192857 Msa0527030:intron 35.0%
!! GATTGACTTTTGCATAGGTA+AGG + chr3_4:81192843-81192862 Msa0527030:intron 35.0%
! TTTTGTGACCTTCAAGACAA+AGG + chr3_4:81192898-81192917 Msa0527030:CDS 35.0%
TGCTAATTCCTTTGTCTTGA+AGG - chr3_4:81192909-81192928 None:intergenic 35.0%
GACAAAGGAATTAGCATCTA+AGG + chr3_4:81192913-81192932 Msa0527030:CDS 35.0%
GTTGAACAACTCTGAATTCA+AGG + chr3_4:81192946-81192965 Msa0527030:CDS 35.0%
!!! AGCACTTTATTTTTCTTCCC+TGG - chr3_4:81193160-81193179 None:intergenic 35.0%
!! GTTAAGCATCGGTTATTCAT+TGG + chr3_4:81193191-81193210 Msa0527030:CDS 35.0%
!! TTGGTAATGTTCCTAAAGAG+TGG + chr3_4:81193210-81193229 Msa0527030:CDS 35.0%
GACTGTAGAAGATATGAAGA+AGG + chr3_4:81193232-81193251 Msa0527030:CDS 35.0%
TATGAAGTGTGTTGCATGTT+GGG + chr3_4:81193388-81193407 Msa0527030:intron 35.0%
ATGTTGGGTAATATTTGCCT+TGG + chr3_4:81193403-81193422 Msa0527030:intron 35.0%
! GCTAGCTGTTTCATATTTAC+AGG + chr3_4:81193461-81193480 Msa0527030:intron 35.0%
TAAAAGCAAATCCCCGATTA+CGG - chr3_4:81193503-81193522 None:intergenic 35.0%
ATGCTTGTGCAGAATATTCA+AGG + chr3_4:81193538-81193557 Msa0527030:CDS 35.0%
ATGATGATTCAGAATTCCTC+GGG - chr3_4:81193626-81193645 None:intergenic 35.0%
GATGATGATTCAGAATTCCT+CGG - chr3_4:81193627-81193646 None:intergenic 35.0%
GTTGTATATCTGTTTGTGTG+TGG + chr3_4:81193752-81193771 Msa0527030:intron 35.0%
TAAGATTGAAAAAAGGGGTG+GGG - chr3_4:81193874-81193893 None:intergenic 35.0%
GTTAAGATTGAAAAAAGGGG+TGG - chr3_4:81193876-81193895 None:intergenic 35.0%
TTCTGCTATTGTCTATGTCT+AGG - chr3_4:81193898-81193917 None:intergenic 35.0%
TAGACATAGACAATAGCAGA+AGG + chr3_4:81193897-81193916 Msa0527030:intron 35.0%
GTACTTAGAGCAAAGTTGAA+GGG - chr3_4:81193941-81193960 None:intergenic 35.0%
TGTACTTAGAGCAAAGTTGA+AGG - chr3_4:81193942-81193961 None:intergenic 35.0%
!!! CCAATGGTTTTAGCCATTTA+TGG - chr3_4:81194027-81194046 None:intergenic 35.0%
CCATAAATGGCTAAAACCAT+TGG + chr3_4:81194024-81194043 Msa0527030:intron 35.0%
CCAAAAATTGACAAAGCCAA+TGG - chr3_4:81194043-81194062 None:intergenic 35.0%
!!! CCATTGGCTTTGTCAATTTT+TGG + chr3_4:81194040-81194059 Msa0527030:intron 35.0%
GTAAGGGATAATGTCAAAGT+GGG - chr3_4:81194158-81194177 None:intergenic 35.0%
TGTAAGGGATAATGTCAAAG+TGG - chr3_4:81194159-81194178 None:intergenic 35.0%
TATTAGAAGAAGTCTGTTGG+AGG - chr3_4:81194242-81194261 None:intergenic 35.0%
ACGTATTAGAAGAAGTCTGT+TGG - chr3_4:81194245-81194264 None:intergenic 35.0%
!! GTTAGAGTTGATGATGTTCT+TGG - chr3_4:81194279-81194298 None:intergenic 35.0%
TCAAAATGTCAGCAAGCAAT+TGG - chr3_4:81194334-81194353 None:intergenic 35.0%
!! GTCTTGCCACTTTCAATAAA+TGG - chr3_4:81194405-81194424 None:intergenic 35.0%
! ACTAAAATGCTGAGTTGAGA+GGG + chr3_4:81194423-81194442 Msa0527030:intron 35.0%
AGATGAGTCATGAGAAAGAA+TGG - chr3_4:81194574-81194593 None:intergenic 35.0%
!!! CAGTTTTGTTCTGTGTATGT+CGG - chr3_4:81194825-81194844 None:intergenic 35.0%
AGAGCTTAGACATAAAAAGG+AGG + chr3_4:81194896-81194915 Msa0527030:intron 35.0%
! AAAAATAGAGCATCAAGCAG+TGG - chr3_4:81195069-81195088 None:intergenic 35.0%
!! TTTCCATTTTGTGTGCTGAT+TGG + chr3_4:81195087-81195106 Msa0527030:intron 35.0%
AAATTTCCTGATCCAGTAAG+AGG - chr3_4:81195119-81195138 None:intergenic 35.0%
TTTCGAAGAAGCGATATCTT+TGG + chr3_4:81195198-81195217 Msa0527030:intron 35.0%
TTGCAGTTGCAAATAGACAA+AGG - chr3_4:81195252-81195271 None:intergenic 35.0%
CTGCAATTAGTTGAACCAAA+TGG + chr3_4:81195266-81195285 Msa0527030:intron 35.0%
!! TAAGTTTTATAACCGTGACC+TGG + chr3_4:81195368-81195387 Msa0527030:intron 35.0%
! TCTGAGTTATGTTTTCTGGA+AGG - chr3_4:81195428-81195447 None:intergenic 35.0%
! CGATTCTGAGTTATGTTTTC+TGG - chr3_4:81195432-81195451 None:intergenic 35.0%
AAAGAGCTGTTTGAACATCA+TGG + chr3_4:81195456-81195475 Msa0527030:CDS 35.0%
TCATGGAAAGATCACAAAAG+TGG + chr3_4:81195473-81195492 Msa0527030:CDS 35.0%
!! GTTTTGTTCACTTTGCTGAT+AGG + chr3_4:81195538-81195557 Msa0527030:CDS 35.0%
! ACGGAGAAGTATGAAATTGA+TGG + chr3_4:81195588-81195607 Msa0527030:CDS 35.0%
! CTGTAAACCATCAAGTTTTC+TGG + chr3_4:81195671-81195690 Msa0527030:intron 35.0%
!! AACCATCAAGTTTTCTGGAA+TGG + chr3_4:81195676-81195695 Msa0527030:intron 35.0%
TCTCAAAAAAATGAGGGTTG+GGG + chr3_4:81195928-81195947 Msa0527030:intron 35.0%
CAAAACATAAATCACCCAAC+TGG - chr3_4:81196055-81196074 None:intergenic 35.0%
! TCAATTTCACTGGTTGTAAG+TGG + chr3_4:81196082-81196101 Msa0527030:intron 35.0%
!! TGTAAGTGGTTCTGAACTTT+CGG + chr3_4:81196096-81196115 Msa0527030:intron 35.0%
! CATAAGCACCAAGTTCTTTT+AGG - chr3_4:81196347-81196366 None:intergenic 35.0%
!! AAAAGAACTTGGTGCTTATG+TGG + chr3_4:81196347-81196366 Msa0527030:intron 35.0%
! ATCTTCTTGTTTGTGACTGT+AGG + chr3_4:81196620-81196639 Msa0527030:intron 35.0%
AACGATAATAACCGTAATCG+TGG + chr3_4:81196733-81196752 Msa0527030:CDS 35.0%
!! AGATTAATTTTCGGCTTTGG+GGG - chr3_4:81196808-81196827 None:intergenic 35.0%
! CAGATTAATTTTCGGCTTTG+GGG - chr3_4:81196809-81196828 None:intergenic 35.0%
! CACAGATTAATTTTCGGCTT+TGG - chr3_4:81196811-81196830 None:intergenic 35.0%
CAAAGCCGAAAATTAATCTG+TGG + chr3_4:81196809-81196828 Msa0527030:three_prime_UTR 35.0%
AAAATTTGCAGAACAGGCAT+AGG + chr3_4:81196842-81196861 Msa0527030:three_prime_UTR 35.0%
TCCCATCATAGGAAAAGATA+AGG - chr3_4:81196931-81196950 None:intergenic 35.0%
ATAATCTTACTCCCATCTGT+AGG + chr3_4:81196971-81196990 Msa0527030:three_prime_UTR 35.0%
!!! ATTCTACTTGGTGCCAATTT+TGG + chr3_4:81197118-81197137 Msa0527030:three_prime_UTR 35.0%
! TTAAACTAGCCTGCCAAAAT+TGG - chr3_4:81197134-81197153 None:intergenic 35.0%
TTTGGGAGTTGAATTGTGGA+GGG - chr3_4:81191825-81191844 None:intergenic 40.0%
TGTGTTTGGGAGTTGAATTG+TGG - chr3_4:81191829-81191848 None:intergenic 40.0%
! AGGAGAATAAGGGTGTGTTT+GGG - chr3_4:81191842-81191861 None:intergenic 40.0%
! TAGGAGAATAAGGGTGTGTT+TGG - chr3_4:81191843-81191862 None:intergenic 40.0%
GTTGCAAACCATGGTTTGAT+AGG - chr3_4:81191862-81191881 None:intergenic 40.0%
ATATACACAGAGGAAGAGAG+GGG - chr3_4:81192032-81192051 None:intergenic 40.0%
CAGGAGACAAATATACACAG+AGG - chr3_4:81192042-81192061 None:intergenic 40.0%
! CCGAGTTTCCCAGAAAATTT+TGG - chr3_4:81192093-81192112 None:intergenic 40.0%
TTTGTTGCTATGCTACTCCT+TGG + chr3_4:81192223-81192242 Msa0527030:five_prime_UTR 40.0%
TGAAACTGTTCCATGAGGTA+TGG - chr3_4:81192250-81192269 None:intergenic 40.0%
TCTTACTCTGCTATTCCATC+TGG + chr3_4:81192278-81192297 Msa0527030:five_prime_UTR 40.0%
ATGTGGAAAGGTGGAAACAA+TGG - chr3_4:81192304-81192323 None:intergenic 40.0%
AGTTTGCAAATGTGGAAAGG+TGG - chr3_4:81192313-81192332 None:intergenic 40.0%
GAGAGTTTGCAAATGTGGAA+AGG - chr3_4:81192316-81192335 None:intergenic 40.0%
CTCTCTTCTTTGTATGCTTC+TGG + chr3_4:81192331-81192350 Msa0527030:five_prime_UTR 40.0%
TCTAGAAAAGCAAGCTTGCA+GGG - chr3_4:81192380-81192399 None:intergenic 40.0%
ATCTAGAAAAGCAAGCTTGC+AGG - chr3_4:81192381-81192400 None:intergenic 40.0%
TGAGTATGAAGAAGTAGAGG+TGG + chr3_4:81192554-81192573 Msa0527030:CDS 40.0%
AGAAGAAGAGGAAGAAGTAG+AGG + chr3_4:81192596-81192615 Msa0527030:CDS 40.0%
GCCTCATCTTCTTCATCTAA+GGG - chr3_4:81192633-81192652 None:intergenic 40.0%
AGCCTCATCTTCTTCATCTA+AGG - chr3_4:81192634-81192653 None:intergenic 40.0%
ATGGTTCAGAGGTCTACATT+GGG + chr3_4:81192694-81192713 Msa0527030:CDS 40.0%
! AAGGGTCTTTTGTCAATCTG+TGG + chr3_4:81192749-81192768 Msa0527030:CDS 40.0%
! AGGGTCTTTTGTCAATCTGT+GGG + chr3_4:81192750-81192769 Msa0527030:CDS 40.0%
TGCATAGGTAAGGGTTATGA+AGG + chr3_4:81192853-81192872 Msa0527030:intron 40.0%
GCATAGGTAAGGGTTATGAA+GGG + chr3_4:81192854-81192873 Msa0527030:intron 40.0%
CATAGGTAAGGGTTATGAAG+GGG + chr3_4:81192855-81192874 Msa0527030:intron 40.0%
! GGTCACAAAAGCATAACCTT+TGG - chr3_4:81192888-81192907 None:intergenic 40.0%
CACCATCTCAAGTTAAGCAT+CGG + chr3_4:81193180-81193199 Msa0527030:CDS 40.0%
! AACCGATGCTTAACTTGAGA+TGG - chr3_4:81193185-81193204 None:intergenic 40.0%
TCTTCTACAGTCCACTCTTT+AGG - chr3_4:81193224-81193243 None:intergenic 40.0%
TATGAAGAAGGTTGTTGCCA+AGG + chr3_4:81193244-81193263 Msa0527030:CDS 40.0%
CTATGAAGTGTGTTGCATGT+TGG + chr3_4:81193387-81193406 Msa0527030:intron 40.0%
ACACAAAATGCAAGTAGCCA+AGG - chr3_4:81193423-81193442 None:intergenic 40.0%
ATAACGATGCAATAGTGAGC+TGG + chr3_4:81193595-81193614 Msa0527030:CDS 40.0%
TAACGATGCAATAGTGAGCT+GGG + chr3_4:81193596-81193615 Msa0527030:CDS 40.0%
TGAATCATCATCATCCTCTC+AGG + chr3_4:81193635-81193654 Msa0527030:CDS 40.0%
AATGGCTGATGTAGGCAATT+TGG + chr3_4:81194113-81194132 Msa0527030:intron 40.0%
TAAACCGCAAGGGAATTTCA+GGG - chr3_4:81194213-81194232 None:intergenic 40.0%
ATAAACCGCAAGGGAATTTC+AGG - chr3_4:81194214-81194233 None:intergenic 40.0%
TGAAATTCCCTTGCGGTTTA+TGG + chr3_4:81194213-81194232 Msa0527030:intron 40.0%
CTAACCACATCAACTGTCAA+AGG + chr3_4:81194294-81194313 Msa0527030:intron 40.0%
! TTGTCCTTTGACAGTTGATG+TGG - chr3_4:81194301-81194320 None:intergenic 40.0%
! GACTAAAATGCTGAGTTGAG+AGG + chr3_4:81194422-81194441 Msa0527030:intron 40.0%
! CTAAAATGCTGAGTTGAGAG+GGG + chr3_4:81194424-81194443 Msa0527030:intron 40.0%
! TAAAATGCTGAGTTGAGAGG+GGG + chr3_4:81194425-81194444 Msa0527030:intron 40.0%
! ATACAGCGTCTGTTTTGCTT+TGG - chr3_4:81194758-81194777 None:intergenic 40.0%
CATGTAACCTGGCAATTTAC+TGG - chr3_4:81195026-81195045 None:intergenic 40.0%
! CAACAGGAAAGTACACCATT+TGG - chr3_4:81195284-81195303 None:intergenic 40.0%
!! TTTTCTTGTCCAGCTTTAGC+AGG - chr3_4:81195507-81195526 None:intergenic 40.0%
GGACAAGAAAAGAGCAGATA+TGG + chr3_4:81195516-81195535 Msa0527030:CDS 40.0%
TGATAGGTCAAGTGCAATGA+AGG + chr3_4:81195554-81195573 Msa0527030:CDS 40.0%
GTCCATTCCAGAAAACTTGA+TGG - chr3_4:81195681-81195700 None:intergenic 40.0%
GAAGGTAAAGAGCAAGTTAC+CGG - chr3_4:81195880-81195899 None:intergenic 40.0%
! ATTGTAGCCAGTGTACTGAT+TGG - chr3_4:81195974-81195993 None:intergenic 40.0%
! ATGCCAATGCTTTTACCAGA+TGG + chr3_4:81196463-81196482 Msa0527030:CDS 40.0%
! CTTCCATCTGGTAAAAGCAT+TGG - chr3_4:81196469-81196488 None:intergenic 40.0%
! CAATGCTTTTACCAGATGGA+AGG + chr3_4:81196467-81196486 Msa0527030:CDS 40.0%
ACATATGCAATCCTTCCATC+TGG - chr3_4:81196481-81196500 None:intergenic 40.0%
GTTTATGCTCTTGCATGGTT+AGG + chr3_4:81196539-81196558 Msa0527030:intron 40.0%
AATAACCGTAATCGTGGTCA+TGG + chr3_4:81196739-81196758 Msa0527030:CDS 40.0%
GTTAAAAAATGCAAGGCAGC+AGG - chr3_4:81196909-81196928 None:intergenic 40.0%
GTTTGGGAGTTGAATTGTGG+AGG - chr3_4:81191826-81191845 None:intergenic 45.0%
!! GGATAATGGGTTGCAAACCA+TGG - chr3_4:81191871-81191890 None:intergenic 45.0%
! GCATCTTTTTGTCTTGTCCC+AGG - chr3_4:81192414-81192433 None:intergenic 45.0%
! CCAGAATCTGTGGGTTTTTC+AGG - chr3_4:81192477-81192496 None:intergenic 45.0%
CCTGAAAAACCCACAGATTC+TGG + chr3_4:81192474-81192493 Msa0527030:CDS 45.0%
GTGAGCAGGTAGATCTTGAT+GGG + chr3_4:81192496-81192515 Msa0527030:CDS 45.0%
TGAGCAGGTAGATCTTGATG+GGG + chr3_4:81192497-81192516 Msa0527030:CDS 45.0%
TGATGGGGACAATGATCAAG+AGG + chr3_4:81192512-81192531 Msa0527030:CDS 45.0%
TGATCAAGAGGAATCAAGCG+AGG + chr3_4:81192524-81192543 Msa0527030:CDS 45.0%
GTATGAAGAAGTAGAGGTGG+AGG + chr3_4:81192557-81192576 Msa0527030:CDS 45.0%
AGTGGAAGAGGAAGAAGAAG+AGG + chr3_4:81192584-81192603 Msa0527030:CDS 45.0%
GCCCTTAGATGAAGAAGATG+AGG + chr3_4:81192629-81192648 Msa0527030:CDS 45.0%
ATGTAGACCTCTGAACCATG+AGG - chr3_4:81192693-81192712 None:intergenic 45.0%
CATGGTTCAGAGGTCTACAT+TGG + chr3_4:81192693-81192712 Msa0527030:CDS 45.0%
TGGTTCAGAGGTCTACATTG+GGG + chr3_4:81192695-81192714 Msa0527030:CDS 45.0%
TTGTCAATCTGTGGGAGAAG+TGG + chr3_4:81192758-81192777 Msa0527030:CDS 45.0%
ATGAAGGGGAAAGAAGCCAA+AGG + chr3_4:81192869-81192888 Msa0527030:CDS 45.0%
! ATTAGCATCTAAGGCTCTCG+AGG + chr3_4:81192922-81192941 Msa0527030:CDS 45.0%
ACTACATGCAGCCAGCTTAA+TGG - chr3_4:81193101-81193120 None:intergenic 45.0%
AAGAAGGTTGTTGCCAAGGT+TGG + chr3_4:81193248-81193267 Msa0527030:CDS 45.0%
CATTTCGGTGGAACTGTTGA+AGG + chr3_4:81193280-81193299 Msa0527030:CDS 45.0%
TGAAACAGCTAGCTAGGTCA+AGG - chr3_4:81193454-81193473 None:intergenic 45.0%
! CACAGAGTTCTAGCCGTAAT+CGG + chr3_4:81193487-81193506 Msa0527030:CDS 45.0%
! ACAGAGTTCTAGCCGTAATC+GGG + chr3_4:81193488-81193507 Msa0527030:CDS 45.0%
CATGTAATAGGTCACCTGAG+AGG - chr3_4:81193652-81193671 None:intergenic 45.0%
TTCGTAAATCACTTCCCGCA+AGG + chr3_4:81193702-81193721 Msa0527030:intron 45.0%
TCTGTTTGTGTGTGGCTGAA+TGG + chr3_4:81193760-81193779 Msa0527030:intron 45.0%
GGTACATGAATGGCTGATGT+AGG + chr3_4:81194105-81194124 Msa0527030:intron 45.0%
ACAACCCTGAAATTCCCTTG+CGG + chr3_4:81194206-81194225 Msa0527030:intron 45.0%
! AAAATGCTGAGTTGAGAGGG+GGG + chr3_4:81194426-81194445 Msa0527030:intron 45.0%
CTTCATCTCAGCTCTGTTCT+GGG - chr3_4:81194853-81194872 None:intergenic 45.0%
TCTTCATCTCAGCTCTGTTC+TGG - chr3_4:81194854-81194873 None:intergenic 45.0%
TGGATCACCAGTAAATTGCC+AGG + chr3_4:81195016-81195035 Msa0527030:intron 45.0%
CCTCCAATCAGCACACAAAA+TGG - chr3_4:81195093-81195112 None:intergenic 45.0%
!!! CCATTTTGTGTGCTGATTGG+AGG + chr3_4:81195090-81195109 Msa0527030:intron 45.0%
TTTCACCTGTACTAAGCACC+AGG - chr3_4:81195389-81195408 None:intergenic 45.0%
!!! CAAGTTTTCTGGAATGGACC+AGG + chr3_4:81195682-81195701 Msa0527030:intron 45.0%
GAATGGACCAGGTCAAACTT+TGG + chr3_4:81195693-81195712 Msa0527030:intron 45.0%
GAGCATTCCAAAGTTTGACC+TGG - chr3_4:81195703-81195722 None:intergenic 45.0%
GATGACTTCTGATCTGCTTG+TGG - chr3_4:81195736-81195755 None:intergenic 45.0%
CAAGCAGATCAGAAGTCATC+TGG + chr3_4:81195736-81195755 Msa0527030:CDS 45.0%
TATCCACCTCCTCTTGGTTA+TGG + chr3_4:81195796-81195815 Msa0527030:CDS 45.0%
ATACCATAACCAAGAGGAGG+TGG - chr3_4:81195802-81195821 None:intergenic 45.0%
ACCTCCTCTTGGTTATGGTA+TGG + chr3_4:81195801-81195820 Msa0527030:CDS 45.0%
ACCATACCATAACCAAGAGG+AGG - chr3_4:81195805-81195824 None:intergenic 45.0%
CCAACCATACCATAACCAAG+AGG - chr3_4:81195808-81195827 None:intergenic 45.0%
CCTCTTGGTTATGGTATGGT+TGG + chr3_4:81195805-81195824 Msa0527030:CDS 45.0%
CTTGGTTATGGTATGGTTGG+AGG + chr3_4:81195808-81195827 Msa0527030:CDS 45.0%
!! TGGAAGCATCTTCTTAGCCT+AGG - chr3_4:81195954-81195973 None:intergenic 45.0%
GATGCTTCCAATCAGTACAC+TGG + chr3_4:81195964-81195983 Msa0527030:intron 45.0%
CTCTTTCAGCCTATGATGAG+GGG - chr3_4:81196165-81196184 None:intergenic 45.0%
CCTCTTTCAGCCTATGATGA+GGG - chr3_4:81196166-81196185 None:intergenic 45.0%
ACCTCTTTCAGCCTATGATG+AGG - chr3_4:81196167-81196186 None:intergenic 45.0%
AATGTGCAGCCACTGATGTA+TGG + chr3_4:81196409-81196428 Msa0527030:intron 45.0%
GGAGCATGTTGTTGAAAACC+TGG - chr3_4:81196652-81196671 None:intergenic 45.0%
!!! TTAATTTTCGGCTTTGGGGG+AGG - chr3_4:81196805-81196824 None:intergenic 45.0%
! AGTGCTCTAAGCCTACAGAT+GGG - chr3_4:81196985-81197004 None:intergenic 45.0%
!!! TACTTGGTGCCAATTTTGGC+AGG + chr3_4:81197122-81197141 Msa0527030:three_prime_UTR 45.0%
!!! AAATTTTAAATTTAAATCTT+TGG - chr3_4:81193684-81193703 None:intergenic 5.0%
ACTCCTTGGTCCATACCTCA+TGG + chr3_4:81192237-81192256 Msa0527030:five_prime_UTR 50.0%
GTTCCATGAGGTATGGACCA+AGG - chr3_4:81192243-81192262 None:intergenic 50.0%
AGGTGGAAACAATGGCCAGA+TGG - chr3_4:81192296-81192315 None:intergenic 50.0%
AGCTTGCAGGGCAACTATGA+AGG - chr3_4:81192368-81192387 None:intergenic 50.0%
CCCTGGTGAGTCTGAATTTC+GGG - chr3_4:81192442-81192461 None:intergenic 50.0%
CCCGAAATTCAGACTCACCA+GGG + chr3_4:81192439-81192458 Msa0527030:CDS 50.0%
CCCCTGGTGAGTCTGAATTT+CGG - chr3_4:81192443-81192462 None:intergenic 50.0%
CCGAAATTCAGACTCACCAG+GGG + chr3_4:81192440-81192459 Msa0527030:CDS 50.0%
CGAAATTCAGACTCACCAGG+GGG + chr3_4:81192441-81192460 Msa0527030:CDS 50.0%
ACCTGCTCACCAGAATCTGT+GGG - chr3_4:81192486-81192505 None:intergenic 50.0%
TACCTGCTCACCAGAATCTG+TGG - chr3_4:81192487-81192506 None:intergenic 50.0%
GGTGAGCAGGTAGATCTTGA+TGG + chr3_4:81192495-81192514 Msa0527030:CDS 50.0%
AGTAGAGGTGGAGGAAGAAG+TGG + chr3_4:81192566-81192585 Msa0527030:CDS 50.0%
TAGACCTCTGAACCATGAGG+TGG - chr3_4:81192690-81192709 None:intergenic 50.0%
GGTTCAGAGGTCTACATTGG+GGG + chr3_4:81192696-81192715 Msa0527030:CDS 50.0%
TCACTCCTTTCTGCGTTTCC+AGG + chr3_4:81193139-81193158 Msa0527030:intron 50.0%
CACTCCTTTCTGCGTTTCCA+GGG + chr3_4:81193140-81193159 Msa0527030:intron 50.0%
TCTTCCCTGGAAACGCAGAA+AGG - chr3_4:81193147-81193166 None:intergenic 50.0%
GTTCCACCGAAATGACTCCA+GGG - chr3_4:81193274-81193293 None:intergenic 50.0%
AGTTCCACCGAAATGACTCC+AGG - chr3_4:81193275-81193294 None:intergenic 50.0%
CGATTACGGCTAGAACTCTG+TGG - chr3_4:81193489-81193508 None:intergenic 50.0%
! CAGAGTTCTAGCCGTAATCG+GGG + chr3_4:81193489-81193508 Msa0527030:CDS 50.0%
AGGGGTGGGGTGAAGTAAAA+TGG - chr3_4:81193861-81193880 None:intergenic 50.0%
GAGGAAGCCATAAACCGCAA+GGG - chr3_4:81194223-81194242 None:intergenic 50.0%
! AAATGCTGAGTTGAGAGGGG+GGG + chr3_4:81194427-81194446 Msa0527030:intron 50.0%
CTGTGTATGTCGGTAGAGAG+AGG - chr3_4:81194815-81194834 None:intergenic 50.0%
!! GATTGGAGGTGTCCTCTTAC+TGG + chr3_4:81195104-81195123 Msa0527030:intron 50.0%
AGGTGTCCTCTTACTGGATC+AGG + chr3_4:81195110-81195129 Msa0527030:intron 50.0%
CTGTACTAAGCACCAGGTCA+CGG - chr3_4:81195383-81195402 None:intergenic 50.0%
! CTTGTCCAGCTTTAGCAGGA+GGG - chr3_4:81195503-81195522 None:intergenic 50.0%
! TCTTGTCCAGCTTTAGCAGG+AGG - chr3_4:81195504-81195523 None:intergenic 50.0%
GGTTATGGTATGGTTGGAGG+TGG + chr3_4:81195811-81195830 Msa0527030:CDS 50.0%
GGTATGGTTGGAGGTGGATA+TGG + chr3_4:81195817-81195836 Msa0527030:CDS 50.0%
AAAAATGAGGGTTGGGGCCT+AGG + chr3_4:81195934-81195953 Msa0527030:intron 50.0%
ATGTTCCCTCCCCTCATCAT+AGG + chr3_4:81196153-81196172 Msa0527030:intron 50.0%
TTCAGCCTATGATGAGGGGA+GGG - chr3_4:81196161-81196180 None:intergenic 50.0%
TTTCAGCCTATGATGAGGGG+AGG - chr3_4:81196162-81196181 None:intergenic 50.0%
CCCTCATCATAGGCTGAAAG+AGG + chr3_4:81196163-81196182 Msa0527030:intron 50.0%
AGCGAGAGAGCAAGAGAGAT+AGG - chr3_4:81196374-81196393 None:intergenic 50.0%
CTTGCTCTCTCGCTGATAAG+AGG + chr3_4:81196380-81196399 Msa0527030:intron 50.0%
ATGCTCCATCACCAGTATCC+CGG + chr3_4:81196665-81196684 Msa0527030:CDS 50.0%
! AGTAGTGGTGTCAGCTCAAG+TGG + chr3_4:81196697-81196716 Msa0527030:CDS 50.0%
ATCGGCCATGACCACGATTA+CGG - chr3_4:81196747-81196766 None:intergenic 50.0%
! CAGTGCTCTAAGCCTACAGA+TGG - chr3_4:81196986-81197005 None:intergenic 50.0%
CATCTGTAGGCTTAGAGCAC+TGG + chr3_4:81196984-81197003 Msa0527030:three_prime_UTR 50.0%
CACAGAGGAAGAGAGGGGAA+AGG - chr3_4:81192027-81192046 None:intergenic 55.0%
GCCCGAAATTCAGACTCACC+AGG + chr3_4:81192438-81192457 Msa0527030:CDS 55.0%
TCAGGTTCACTGTTTCCCCC+TGG - chr3_4:81192459-81192478 None:intergenic 55.0%
ACCCACAGATTCTGGTGAGC+AGG + chr3_4:81192482-81192501 Msa0527030:CDS 55.0%
GGTGGAGGAAGAAGTGGAAG+AGG + chr3_4:81192572-81192591 Msa0527030:CDS 55.0%
CTTCTTGCGCTTCCACCTCA+TGG + chr3_4:81192675-81192694 Msa0527030:CDS 55.0%
GCTTCCACCTCATGGTTCAG+AGG + chr3_4:81192683-81192702 Msa0527030:CDS 55.0%
ATCTGTGGGAGAAGTGGCAG+AGG + chr3_4:81192764-81192783 Msa0527030:CDS 55.0%
AATGACTCCAGGGCCAACCT+TGG - chr3_4:81193264-81193283 None:intergenic 55.0%
! GGTTGGCCCTGGAGTCATTT+CGG + chr3_4:81193265-81193284 Msa0527030:CDS 55.0%
GGAGGAAGCCATAAACCGCA+AGG - chr3_4:81194224-81194243 None:intergenic 55.0%
CGTGACCTGGTGCTTAGTAC+AGG + chr3_4:81195381-81195400 Msa0527030:intron 55.0%
!! GGAGGTGGATATGGTGCTGT+TGG + chr3_4:81195826-81195845 Msa0527030:CDS 55.0%
!! GGATATGGTGCTGTTGGTGC+AGG + chr3_4:81195832-81195851 Msa0527030:CDS 55.0%
!! GGTGCTGTTGGTGCAGGATA+TGG + chr3_4:81195838-81195857 Msa0527030:CDS 55.0%
GCAGCCACTGATGTATGGTC+CGG + chr3_4:81196414-81196433 Msa0527030:intron 55.0%
CAGCCACTGATGTATGGTCC+GGG + chr3_4:81196415-81196434 Msa0527030:intron 55.0%
GGCATCATTGTCATGCCAGC+AGG - chr3_4:81196448-81196467 None:intergenic 55.0%
TGTGACTGTAGGCAACAGCC+AGG + chr3_4:81196631-81196650 Msa0527030:intron 55.0%
ACCACTACTCCTACCATGCC+GGG - chr3_4:81196686-81196705 None:intergenic 55.0%
CACCACTACTCCTACCATGC+CGG - chr3_4:81196687-81196706 None:intergenic 55.0%
! CTTTGGGGGAGGTAACCAGT+AGG - chr3_4:81196794-81196813 None:intergenic 55.0%
!! AGAGCACTGGCGATGACTCA+CGG + chr3_4:81196997-81197016 Msa0527030:three_prime_UTR 55.0%
! GTTGTTGCCAAGGTTGGCCC+TGG + chr3_4:81193254-81193273 Msa0527030:CDS 60.0%
TGGCCCTGGAGTCATTTCGG+TGG + chr3_4:81193268-81193287 Msa0527030:CDS 60.0%
GCTCTCCCTCCTGCTAAAGC+TGG + chr3_4:81195495-81195514 Msa0527030:CDS 60.0%
CCAAGAGGAGGTGGATACGC+AGG - chr3_4:81195793-81195812 None:intergenic 60.0%
CCTGCGTATCCACCTCCTCT+TGG + chr3_4:81195790-81195809 Msa0527030:CDS 60.0%
!! GGTGCAGGATATGGTGCTGC+TGG + chr3_4:81195847-81195866 Msa0527030:CDS 60.0%
!! TGGTGCTGCTGGCTTTGCAC+CGG + chr3_4:81195858-81195877 Msa0527030:CDS 60.0%
GCTCCCGGACCATACATCAG+TGG - chr3_4:81196421-81196440 None:intergenic 60.0%
ATGCCAGCAGGAGTTGCTCC+CGG - chr3_4:81196436-81196455 None:intergenic 60.0%
CCATGCCGGGATACTGGTGA+TGG - chr3_4:81196673-81196692 None:intergenic 60.0%
CCATCACCAGTATCCCGGCA+TGG + chr3_4:81196670-81196689 Msa0527030:CDS 60.0%
CACCAGTATCCCGGCATGGT+AGG + chr3_4:81196674-81196693 Msa0527030:CDS 60.0%
CTCCTACCATGCCGGGATAC+TGG - chr3_4:81196679-81196698 None:intergenic 60.0%
TCCCGGCATGGTAGGAGTAG+TGG + chr3_4:81196682-81196701 Msa0527030:CDS 60.0%
TAGTGAGCTGGGCTGACCCG+AGG + chr3_4:81193607-81193626 Msa0527030:CDS 65.0%
! GCTGAGTTGAGAGGGGGGGT+CGG + chr3_4:81194431-81194450 Msa0527030:intron 65.0%
GGTCCGGGAGCAACTCCTGC+TGG + chr3_4:81196430-81196449 Msa0527030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81191772 81197177 81191772 ID=Msa0527030;Name=Msa0527030
chr3_4 mRNA 81191772 81197177 81191772 ID=Msa0527030-mRNA-1;Parent=Msa0527030;Name=Msa0527030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=636|0.85|0.87|1|0.85|0.87|8|397|474
chr3_4 exon 81191772 81192785 81191772 ID=Msa0527030-mRNA-1:exon:24490;Parent=Msa0527030-mRNA-1
chr3_4 exon 81192860 81192967 81192860 ID=Msa0527030-mRNA-1:exon:24491;Parent=Msa0527030-mRNA-1
chr3_4 exon 81193161 81193301 81193161 ID=Msa0527030-mRNA-1:exon:24492;Parent=Msa0527030-mRNA-1
chr3_4 exon 81193483 81193672 81193483 ID=Msa0527030-mRNA-1:exon:24493;Parent=Msa0527030-mRNA-1
chr3_4 exon 81195403 81195609 81195403 ID=Msa0527030-mRNA-1:exon:24494;Parent=Msa0527030-mRNA-1
chr3_4 exon 81195704 81195879 81195704 ID=Msa0527030-mRNA-1:exon:24495;Parent=Msa0527030-mRNA-1
chr3_4 exon 81196418 81196503 81196418 ID=Msa0527030-mRNA-1:exon:24496;Parent=Msa0527030-mRNA-1
chr3_4 exon 81196642 81197177 81196642 ID=Msa0527030-mRNA-1:exon:24497;Parent=Msa0527030-mRNA-1
chr3_4 five_prime_UTR 81191772 81192407 81191772 ID=Msa0527030-mRNA-1:five_prime_utr;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81192408 81192785 81192408 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81192860 81192967 81192860 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81193161 81193301 81193161 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81193483 81193672 81193483 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81195403 81195609 81195403 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81195704 81195879 81195704 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81196418 81196503 81196418 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 CDS 81196642 81196780 81196642 ID=Msa0527030-mRNA-1:cds;Parent=Msa0527030-mRNA-1
chr3_4 three_prime_UTR 81196781 81197177 81196781 ID=Msa0527030-mRNA-1:three_prime_utr;Parent=Msa0527030-mRNA-1
Gene Sequence

>Msa0527030

ATGCCTGGGACAAGACAAAAAGATGCAACTGCCCGAAATTCAGACTCACCAGGGGGAAACAGTGAACCTGAAAAACCCACAGATTCTGGTGAGCAGGTAGATCTTGATGGGGACAATGATCAAGAGGAATCAAGCGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAAGAAGTAGAGGAAGAGAGTAAGCCCTTAGATGAAGAAGATGAGGCTGACAAAAAGAAACACGCTGAGCTTCTTGCGCTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCACGAAACTTCTGAAAAAGATTTAAGGGTCTTTTGTCAATCTGTGGGAGAAGTGGCAGAGGTAAGGGTTATGAAGGGGAAAGAAGCCAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTAGCATCTAAGGCTCTCGAGGAGTTGAACAACTCTGAATTCAAGGGAAGAAAAATAAAGTGCTCACCATCTCAAGTTAAGCATCGGTTATTCATTGGTAATGTTCCTAAAGAGTGGACTGTAGAAGATATGAAGAAGGTTGTTGCCAAGGTTGGCCCTGGAGTCATTTCGGTGGAACTGTTGAAGGATCCACAGAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCAAACTTTAAACTTGACAATAACGATGCAATAGTGAGCTGGGCTGACCCGAGGAATTCTGAATCATCATCATCCTCTCAGGTGACCTATTACATGAGTGAAAGCAGTATATGTAAAGACCTTCCAGAAAACATAACTCAGAATCGTCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGTCAAACTTTGGAATGCTCACTTGCTAAGCCACAAGCAGATCAGAAGTCATCTGGTGCATCAAATTCATTCAACTCTGCTGTACTTCCTGCGTATCCACCTCCTCTTGGTTATGGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGACAATGATGCCAATGCTTTTACCAGATGGAAGGATTGCATATGTATTGCAACAGCCAGGTTTTCAACAACATGCTCCATCACCAGTATCCCGGCATGGTAGGAGTAGTGGTGTCAGCTCAAGTGGTGAAAAACGCAGTAACGATAATAACCGTAATCGTGGTCATGGCCGATATAATCCTTACTAA
Protein sequence

>Msa0527030

MPGTRQKDATARNSDSPGGNSEPEKPTDSGEQVDLDGDNDQEESSEEEVEYEEVEVEEEVEEEEEEEEVEEESKPLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALEELNNSEFKGRKIKCSPSQVKHRLFIGNVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVTYYMSESSICKDLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPGFQQHAPSPVSRHGRSSGVSSSGEKRSNDNNRNRGHGRYNPY*