AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790880 MtrunA17_Chr7g0266451 97.275 477 5 2 1 469 1 477 0.0 943
Msa0790880 MtrunA17_Chr4g0026301 69.492 354 104 2 80 430 92 444 0.0 530
Msa0790880 MtrunA17_Chr7g0217261 62.912 364 129 3 76 436 329 689 7.00e-164 479
Msa0790880 MtrunA17_Chr7g0276201 52.696 408 177 7 43 436 44 449 1.48e-140 412
Msa0790880 MtrunA17_Chr8g0372111 32.806 253 163 4 99 344 419 671 1.26e-36 144
Msa0790880 MtrunA17_Chr8g0335981 30.333 300 177 9 59 347 196 474 4.70e-32 130
Msa0790880 MtrunA17_Chr7g0250221 29.496 278 174 8 62 326 162 430 7.45e-24 105
Msa0790880 MtrunA17_Chr4g0074711 22.881 354 214 11 92 407 63 395 2.68e-19 89.7
Msa0790880 MtrunA17_Chr3g0134141 24.786 234 155 8 98 317 24 250 2.14e-15 78.6
Msa0790880 MtrunA17_Chr1g0153181 25.296 253 168 8 98 336 32 277 5.30e-15 77.4
Msa0790880 MtrunA17_Chr4g0044541 24.803 254 168 9 98 336 34 279 6.49e-15 77.4
Msa0790880 MtrunA17_Chr4g0044541 24.860 358 219 10 100 413 124 475 1.23e-14 76.3
Msa0790880 MtrunA17_Chr2g0288251 21.404 285 186 8 100 353 62 339 8.10e-15 76.3
Msa0790880 MtrunA17_Chr1g0153871 23.101 316 193 9 100 375 99 404 3.25e-14 74.3
Msa0790880 MtrunA17_Chr7g0265341 22.772 404 238 14 100 464 160 528 3.11e-13 72.0
Msa0790880 MtrunA17_Chr0c09g0493511 22.520 373 225 13 98 428 31 381 4.64e-13 71.2
Msa0790880 MtrunA17_Chr6g0466501 24.354 271 179 9 98 353 25 284 6.83e-13 70.9
Msa0790880 MtrunA17_Chr6g0466501 22.911 371 226 12 98 428 113 463 2.36e-12 69.3
Msa0790880 MtrunA17_Chr6g0465751 24.354 271 179 9 98 353 25 284 8.34e-13 70.5
Msa0790880 MtrunA17_Chr6g0465691 22.911 371 226 12 98 428 31 381 1.28e-12 69.7
Msa0790880 MtrunA17_Chr3g0133651 21.831 284 182 6 100 352 95 369 2.18e-12 68.6
Msa0790880 MtrunA17_Chr3g0120721 23.288 219 159 5 176 393 19 229 1.24e-11 65.9
Msa0790880 MtrunA17_Chr6g0449481 23.121 173 127 3 176 348 46 212 6.15e-11 63.9
Msa0790880 MtrunA17_Chr3g0087481 29.412 153 84 5 95 225 57 207 8.89e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790880 AT3G52660.3 56.034 464 188 6 21 469 9 471 1.55e-159 460
Msa0790880 AT3G52660.1 56.034 464 188 6 21 469 9 471 1.55e-159 460
Msa0790880 AT3G52660.2 56.034 464 188 6 21 469 9 471 1.55e-159 460
Msa0790880 AT4G00830.2 51.981 429 190 8 55 469 69 495 9.26e-157 454
Msa0790880 AT4G00830.1 51.981 429 190 8 55 469 69 495 9.26e-157 454
Msa0790880 AT4G00830.6 51.981 429 190 8 55 469 69 495 9.26e-157 454
Msa0790880 AT4G00830.3 51.049 429 186 9 55 469 69 487 1.81e-150 437
Msa0790880 AT4G00830.5 51.049 429 186 9 55 469 69 487 1.81e-150 437
Msa0790880 AT4G00830.4 50.583 429 196 8 55 469 69 495 3.69e-150 437
Msa0790880 AT5G28390.1 44.017 234 75 3 238 469 1 180 2.08e-52 175
Msa0790880 AT2G44710.4 28.339 307 190 8 52 347 101 388 5.44e-28 118
Msa0790880 AT2G44710.2 28.339 307 190 8 52 347 186 473 7.91e-28 117
Msa0790880 AT2G44710.1 28.339 307 190 8 52 347 186 473 7.91e-28 117
Msa0790880 AT4G34110.1 26.459 257 160 9 98 336 36 281 1.77e-17 85.9
Msa0790880 AT4G34110.1 24.033 362 219 12 100 414 126 478 1.32e-13 73.6
Msa0790880 AT1G71770.1 25.651 269 178 7 98 351 59 320 1.14e-16 83.2
Msa0790880 AT1G71770.1 22.678 366 228 13 100 415 148 508 2.56e-12 69.7
Msa0790880 AT1G71770.2 25.651 269 178 7 98 351 59 320 1.14e-16 83.2
Msa0790880 AT1G71770.2 22.678 366 228 13 100 415 148 508 2.56e-12 69.7
Msa0790880 AT2G23350.1 24.346 382 233 15 100 445 136 497 1.67e-16 82.8
Msa0790880 AT2G23350.1 25.794 252 162 9 100 334 48 291 5.47e-15 77.8
Msa0790880 AT1G49760.1 27.049 244 157 9 98 327 45 281 1.73e-16 82.8
Msa0790880 AT1G49760.1 23.797 374 207 15 100 434 135 469 1.89e-13 73.2
Msa0790880 AT1G49760.2 27.049 244 157 9 98 327 45 281 1.73e-16 82.8
Msa0790880 AT1G49760.2 23.797 374 207 15 100 434 135 469 1.89e-13 73.2
Msa0790880 AT1G22760.1 25.260 289 170 11 100 353 138 415 7.93e-13 71.2
Msa0790880 AT1G22760.1 21.933 269 188 7 98 351 49 310 4.84e-12 68.6
Msa0790880 AT2G36660.1 21.184 321 210 8 100 381 114 430 2.17e-12 69.7
Msa0790880 AT1G49600.1 21.523 302 188 6 100 361 121 413 1.15e-11 67.0

Find 183 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTCTTTGTATGCTTC+TGG 0.169584 5_3:+1701063 Msa0790880:five_prime_UTR
CCCTGGTGACTCTGAATTTC+GGG 0.172010 5_3:-1701171 None:intergenic
CCGAGTTTCCCAGAAAATTT+TGG 0.176146 5_3:-1700822 None:intergenic
CCCCTGGTGACTCTGAATTT+CGG 0.182553 5_3:-1701172 None:intergenic
ATTCTACTTGGTGCCAATTT+TGG 0.211528 5_3:+1705852 Msa0790880:three_prime_UTR
GACAAAGGAATTAGCATCTA+AGG 0.262798 5_3:+1701645 Msa0790880:CDS
AGCCTCATCTTCTTCATCTA+AGG 0.282163 5_3:-1701363 None:intergenic
TGCTAATTCCTTTGTCTTGA+AGG 0.283256 5_3:-1701638 None:intergenic
AATAAATTGCTTCCCATCAT+AGG 0.285536 5_3:-1705673 None:intergenic
TCTTCTACAGTCCACTCTTT+AGG 0.290635 5_3:-1701953 None:intergenic
TGGCGCGTGCTTTGTTCTTA+AGG 0.291925 5_3:-1699631 None:intergenic
CTCAACTAGTTCAAACAAAT+AGG 0.293611 5_3:+1705756 Msa0790880:three_prime_UTR
TTAAACTAGCCTGCCAAAAT+TGG 0.297730 5_3:-1705865 None:intergenic
CGCCAACGATTACGAGTTTA+GGG 0.305185 5_3:+1699649 Msa0790880:five_prime_UTR
GCGCCAACGATTACGAGTTT+AGG 0.311976 5_3:+1699648 Msa0790880:five_prime_UTR
GGTATGGTTGGAGGTGGATA+TGG 0.314554 5_3:+1704551 Msa0790880:CDS
TAGTTATACCACAATTTAAC+TGG 0.334444 5_3:+1700799 Msa0790880:intron
ATCTAGAAAAGCAAGCTTGC+AGG 0.339804 5_3:-1701110 None:intergenic
CTCCTACCATGCCGGGATAC+TGG 0.355913 5_3:-1705410 None:intergenic
GGTGCTGTTGGTGCAGGATA+TGG 0.366546 5_3:+1704572 Msa0790880:CDS
ATCGGCCATGACCACGATTA+CGG 0.369175 5_3:-1705478 None:intergenic
CACAGAGTTCTAGCCGTAAT+CGG 0.371058 5_3:+1702219 Msa0790880:CDS
TATGAGAAAATTTGCAGAAC+AGG 0.371907 5_3:+1705570 Msa0790880:three_prime_UTR
TTCTAGATTCATAGAATGCC+TGG 0.372466 5_3:+1701125 Msa0790880:exon
CTTCGATTTCACTTCCAATC+AGG 0.389036 5_3:+1699717 Msa0790880:five_prime_UTR
TCAACTAGTTCAAACAAATA+GGG 0.391746 5_3:+1705757 Msa0790880:three_prime_UTR
GTTAAGCATCGGTTATTCAT+TGG 0.392291 5_3:+1701923 Msa0790880:CDS
GGTTGGCCCTGGAGTCATTT+CGG 0.392811 5_3:+1701997 Msa0790880:CDS
TACGTTGGGCCTTATGGGTC+GGG 0.396545 5_3:-1699563 None:intergenic
TTTGTTGCTATGCTACTCCT+TGG 0.399721 5_3:+1700955 Msa0790880:five_prime_UTR
TACATTAGTAAGGATTATAT+CGG 0.403248 5_3:-1705496 None:intergenic
TATCCACCTCCTCTTGGTTA+TGG 0.404216 5_3:+1704530 Msa0790880:CDS
CATTTCGGTGGAACTGTTGA+AGG 0.404786 5_3:+1702012 Msa0790880:CDS
CTTCTTGCGCTTCCACCTCA+TGG 0.410083 5_3:+1701407 Msa0790880:CDS
GGTGGAGGAAGAAGTGGAAG+AGG 0.422190 5_3:+1701304 Msa0790880:CDS
TAGGAACAATTACATTAGTA+AGG 0.425175 5_3:-1705506 None:intergenic
TTACGTTGGGCCTTATGGGT+CGG 0.429968 5_3:-1699564 None:intergenic
GTTGAACAACTCTGAATTCA+AGG 0.433692 5_3:+1701678 Msa0790880:CDS
CTTGGTTATGGTATGGTTGG+AGG 0.434215 5_3:+1704542 Msa0790880:CDS
GTATGAAGAAGTAGAGGTGG+AGG 0.436885 5_3:+1701289 Msa0790880:CDS
TGCATAGGTAAGGGTTATGA+AGG 0.438139 5_3:+1701585 Msa0790880:intron
GGACAAGAAAAGAGCAGATA+TGG 0.438969 5_3:+1704250 Msa0790880:CDS
TCTTACTCTGCTATTCCATC+TGG 0.438998 5_3:+1701010 Msa0790880:five_prime_UTR
GGTGAGCAGGTAGATCTTGA+TGG 0.439005 5_3:+1701227 Msa0790880:CDS
ACAGAGTTCTAGCCGTAATC+GGG 0.441429 5_3:+1702220 Msa0790880:CDS
CCTGCGTATCCACCTCCTCT+TGG 0.442592 5_3:+1704524 Msa0790880:CDS
ACCTCCTCTTGGTTATGGTA+TGG 0.445868 5_3:+1704535 Msa0790880:CDS
TAAAAGCAAATCCCCGATTA+CGG 0.448099 5_3:-1702232 None:intergenic
CTCGGCGGTGTATGTCCAGA+TGG 0.451609 5_3:-1699590 None:intergenic
AGAGGATAACAATGCTCAAA+AGG 0.456882 5_3:-1700890 None:intergenic
ACTAATGTAATTGTTCCTAC+TGG 0.458808 5_3:+1705510 Msa0790880:exon
CCTCTTGGTTATGGTATGGT+TGG 0.461631 5_3:+1704539 Msa0790880:CDS
GTTGTTGCCAAGGTTGGCCC+TGG 0.464947 5_3:+1701986 Msa0790880:CDS
AAAGAGCTGTTTGAACATCA+TGG 0.465220 5_3:+1704190 Msa0790880:CDS
GGAGGTGGATATGGTGCTGT+TGG 0.465667 5_3:+1704560 Msa0790880:CDS
ATGGTTCAGAGGTCTACATT+GGG 0.465780 5_3:+1701426 Msa0790880:CDS
GGTGCAGGATATGGTGCTGC+TGG 0.466144 5_3:+1704581 Msa0790880:CDS
AGTAGAGGTGGAGGAAGAAG+TGG 0.470019 5_3:+1701298 Msa0790880:CDS
AGTGGAAGAGGAAGAAGAAG+AGG 0.471511 5_3:+1701316 Msa0790880:CDS
CAAGCAGATCAGAAGTCATC+TGG 0.473781 5_3:+1704470 Msa0790880:CDS
ACGGAGAAGTATGAAATTGA+TGG 0.475658 5_3:+1704322 Msa0790880:CDS
ATGCTTGTGCAGAATATTCA+AGG 0.479524 5_3:+1702270 Msa0790880:CDS
GGTCACAAAAGCATAACCTT+TGG 0.479540 5_3:-1701617 None:intergenic
GAATGGACCAGGTCAAACTT+TGG 0.480376 5_3:+1704427 Msa0790880:intron
TCCCATCATAGGAAAAGATA+AGG 0.481594 5_3:-1705662 None:intergenic
CATCTGTAGGCTTAGAGCAC+TGG 0.483180 5_3:+1705718 Msa0790880:three_prime_UTR
TGGACGAATTCACTATTTCT+CGG 0.483888 5_3:-1699608 None:intergenic
GGCCCAACGTAAAACCCATC+TGG 0.485879 5_3:+1699575 Msa0790880:five_prime_UTR
GCCTCATCTTCTTCATCTAA+GGG 0.486530 5_3:-1701362 None:intergenic
TGAATCATCATCATCCTCTC+AGG 0.490075 5_3:+1702367 Msa0790880:CDS
ACCCACAGATTCTGGTGAGC+AGG 0.493614 5_3:+1701214 Msa0790880:CDS
GGTTATGGTATGGTTGGAGG+TGG 0.495269 5_3:+1704545 Msa0790880:CDS
AAGAAGGTTGTTGCCAAGGT+TGG 0.496072 5_3:+1701980 Msa0790880:CDS
GCAACAAAAGTAAGAAAGAC+AGG 0.496344 5_3:-1700940 None:intergenic
AAAGGCCCGCCCGACCCATA+AGG 0.498215 5_3:+1699554 Msa0790880:five_prime_UTR
GGCATCATTGTCATGCCAGC+AGG 0.499937 5_3:-1705179 None:intergenic
ACATATGCAATCCTTCCATC+TGG 0.499994 5_3:-1705212 None:intergenic
AAGAAGAGAGTTTGCAAATG+TGG 0.500154 5_3:-1701050 None:intergenic
GCTCTCCCTCCTGCTAAAGC+TGG 0.501443 5_3:+1704229 Msa0790880:CDS
CACCACTACTCCTACCATGC+CGG 0.502610 5_3:-1705418 None:intergenic
TGAGTATGAAGAAGTAGAGG+TGG 0.503776 5_3:+1701286 Msa0790880:CDS
GGTCCGGGAGCAACTCCTGC+TGG 0.509565 5_3:+1705164 Msa0790880:CDS
AGAAGAAGAGGAAGAAGTAG+AGG 0.510075 5_3:+1701328 Msa0790880:CDS
GAGTTGATGTTGATGTATAA+AGG 0.510191 5_3:+1699536 Msa0790880:five_prime_UTR
TCGGCGGTGTATGTCCAGAT+GGG 0.512621 5_3:-1699589 None:intergenic
ACCACTACTCCTACCATGCC+GGG 0.514963 5_3:-1705417 None:intergenic
TTTAAGTCTAAGATTCTACT+TGG 0.516185 5_3:+1705840 Msa0790880:three_prime_UTR
CGCGTGCTTTGTTCTTAAGG+TGG 0.517038 5_3:-1699628 None:intergenic
TTGGGCCTTATGGGTCGGGC+GGG 0.521978 5_3:-1699559 None:intergenic
GTGAGCAGGTAGATCTTGAT+GGG 0.522099 5_3:+1701228 Msa0790880:CDS
AGTTCCACCGAAATGACTCC+AGG 0.523128 5_3:-1702004 None:intergenic
TGATAGGTCAAGTGCAATGA+AGG 0.523880 5_3:+1704288 Msa0790880:CDS
CCCATCATAGGAAAAGATAA+GGG 0.524572 5_3:-1705661 None:intergenic
GGATATGGTGCTGTTGGTGC+AGG 0.526774 5_3:+1704566 Msa0790880:CDS
GGAAAACGGAAGTACCTGAT+TGG 0.528615 5_3:-1699731 None:intergenic
TGTGACTGTAGGCAACAGCC+AGG 0.530335 5_3:+1705365 Msa0790880:intron
CTTCCATCTGGTAAAAGCAT+TGG 0.530824 5_3:-1705200 None:intergenic
AGCTTGCAGGGCAACTATGA+AGG 0.533010 5_3:-1701097 None:intergenic
GATGATGATTCAGAATTCCT+CGG 0.535591 5_3:-1702356 None:intergenic
ATAACGATGCAATAGTGAGC+TGG 0.537030 5_3:+1702327 Msa0790880:CDS
TCTTGTCCAGCTTTAGCAGG+AGG 0.538943 5_3:-1704235 None:intergenic
AATGACTCCAGGGCCAACCT+TGG 0.541179 5_3:-1701993 None:intergenic
ATGATGATTCAGAATTCCTC+GGG 0.542091 5_3:-1702355 None:intergenic
TACCTGCTCACCAGAATCTG+TGG 0.544070 5_3:-1701216 None:intergenic
ATGCCAGCAGGAGTTGCTCC+CGG 0.544143 5_3:-1705167 None:intergenic
CATGGTTCAGAGGTCTACAT+TGG 0.544508 5_3:+1701425 Msa0790880:CDS
TATGAAGAAGGTTGTTGCCA+AGG 0.545814 5_3:+1701976 Msa0790880:CDS
CTTGTCCAGCTTTAGCAGGA+GGG 0.546775 5_3:-1704234 None:intergenic
TCTAGATTCATAGAATGCCT+GGG 0.547799 5_3:+1701126 Msa0790880:exon
GATGACTTCTGATCTGCTTG+TGG 0.549430 5_3:-1704467 None:intergenic
AGTTGAGTATGAAGAAGTAG+AGG 0.551022 5_3:+1701283 Msa0790880:CDS
AAAATTTGCAGAACAGGCAT+AGG 0.551199 5_3:+1705576 Msa0790880:three_prime_UTR
TTGTCAATCTGTGGGAGAAG+TGG 0.551925 5_3:+1701490 Msa0790880:CDS
ATGCTCCATCACCAGTATCC+CGG 0.551954 5_3:+1705399 Msa0790880:CDS
GACTGTAGAAGATATGAAGA+AGG 0.552294 5_3:+1701964 Msa0790880:CDS
AATGTGCAGCCACTGATGTA+TGG 0.552663 5_3:+1705143 Msa0790880:intron
GCATAGGTAAGGGTTATGAA+GGG 0.554101 5_3:+1701586 Msa0790880:intron
AATGAAGGCATTGAAGAATA+CGG 0.554131 5_3:+1704303 Msa0790880:CDS
TTGGTAATGTTCCTAAAGAG+TGG 0.554375 5_3:+1701942 Msa0790880:CDS
AACCGATGCTTAACTTGAGA+TGG 0.558623 5_3:-1701914 None:intergenic
CCATGCCGGGATACTGGTGA+TGG 0.560019 5_3:-1705404 None:intergenic
CAGTGCTCTAAGCCTACAGA+TGG 0.560481 5_3:-1705717 None:intergenic
AGTAGTGGTGTCAGCTCAAG+TGG 0.560864 5_3:+1705431 Msa0790880:CDS
AATAACCGTAATCGTGGTCA+TGG 0.562058 5_3:+1705473 Msa0790880:CDS
TGGTGCTGCTGGCTTTGCAC+CGG 0.565428 5_3:+1704592 Msa0790880:CDS
TCTAGAAAAGCAAGCTTGCA+GGG 0.565994 5_3:-1701109 None:intergenic
ACTCCTTGGTCCATACCTCA+TGG 0.567908 5_3:+1700969 Msa0790880:five_prime_UTR
TAACGATGCAATAGTGAGCT+GGG 0.568267 5_3:+1702328 Msa0790880:CDS
TGAAACTGTTCCATGAGGTA+TGG 0.570420 5_3:-1700979 None:intergenic
CACCATCTCAAGTTAAGCAT+CGG 0.570455 5_3:+1701912 Msa0790880:CDS
GCAGCCACTGATGTATGGTC+CGG 0.571930 5_3:+1705148 Msa0790880:intron
ATGTGGAAAGGTGGAAACAA+TGG 0.573479 5_3:-1701033 None:intergenic
TCATGGAAAGATCACAAAAG+TGG 0.575285 5_3:+1704207 Msa0790880:CDS
GCCCGAAATTCAGAGTCACC+AGG 0.578656 5_3:+1701170 Msa0790880:CDS
CATAGGTAAGGGTTATGAAG+GGG 0.579849 5_3:+1701587 Msa0790880:intron
AGTTTGCAAATGTGGAAAGG+TGG 0.581122 5_3:-1701042 None:intergenic
AACCCTAAACTCGTAATCGT+TGG 0.581482 5_3:-1699651 None:intergenic
ATACCATAACCAAGAGGAGG+TGG 0.583928 5_3:-1704533 None:intergenic
ATCTGTGGGAGAAGTGGCAG+AGG 0.585652 5_3:+1701496 Msa0790880:CDS
CCAAGAGGAGGTGGATACGC+AGG 0.593051 5_3:-1704524 None:intergenic
TCCCGGCATGGTAGGAGTAG+TGG 0.593910 5_3:+1705416 Msa0790880:CDS
CAGCCACTGATGTATGGTCC+GGG 0.596285 5_3:+1705149 Msa0790880:intron
GCCCTTAGATGAAGAAGATG+AGG 0.598683 5_3:+1701361 Msa0790880:CDS
GAGAGTTTGCAAATGTGGAA+AGG 0.598965 5_3:-1701045 None:intergenic
CAACTAGTTCAAACAAATAG+GGG 0.600096 5_3:+1705758 Msa0790880:three_prime_UTR
GTTGGGCCTTATGGGTCGGG+CGG 0.600341 5_3:-1699560 None:intergenic
TGATGGGGACAATGATCAAG+AGG 0.603621 5_3:+1701244 Msa0790880:CDS
AGGTGGAAACAATGGCCAGA+TGG 0.603883 5_3:-1701025 None:intergenic
AGAGCACTGGCGATGACTCA+CGG 0.605652 5_3:+1705731 Msa0790880:three_prime_UTR
GCTTCCACCTCATGGTTCAG+AGG 0.610025 5_3:+1701415 Msa0790880:CDS
CACCAGTATCCCGGCATGGT+AGG 0.611902 5_3:+1705408 Msa0790880:CDS
GGAGCATGTTGTTGAAAACC+TGG 0.612025 5_3:-1705383 None:intergenic
ACCTGCTCACCAGAATCTGT+GGG 0.613571 5_3:-1701215 None:intergenic
ATAATCTTACTCCCATCTGT+AGG 0.614931 5_3:+1705705 Msa0790880:three_prime_UTR
CCGAAATTCAGAGTCACCAG+GGG 0.615182 5_3:+1701172 Msa0790880:CDS
TAGTGAGCTGGGCTGACCCG+AGG 0.618827 5_3:+1702339 Msa0790880:CDS
CCCGAAATTCAGAGTCACCA+GGG 0.620516 5_3:+1701171 Msa0790880:CDS
AACGATAATAACCGTAATCG+TGG 0.621986 5_3:+1705467 Msa0790880:CDS
TGGCCCTGGAGTCATTTCGG+TGG 0.622046 5_3:+1702000 Msa0790880:CDS
ATTAGCATCTAAGGCTCTCG+AGG 0.629832 5_3:+1701654 Msa0790880:CDS
TGGAAGTGAAATCGAAGTCG+AGG 0.637979 5_3:-1699711 None:intergenic
CCATCACCAGTATCCCGGCA+TGG 0.641754 5_3:+1705404 Msa0790880:CDS
TTGATTGAAACTGTTCCATG+AGG 0.645308 5_3:-1700984 None:intergenic
TGGTTCAGAGGTCTACATTG+GGG 0.645914 5_3:+1701427 Msa0790880:CDS
CAGAGTTCTAGCCGTAATCG+GGG 0.647049 5_3:+1702221 Msa0790880:CDS
CAAAGCCGAAAATTAATCTG+TGG 0.647057 5_3:+1705543 Msa0790880:three_prime_UTR
TAGAAGCTCTACAACTACAA+TGG 0.656732 5_3:-1699688 None:intergenic
CGATTACGGCTAGAACTCTG+TGG 0.668127 5_3:-1702218 None:intergenic
GTTCCACCGAAATGACTCCA+GGG 0.672546 5_3:-1702003 None:intergenic
TAGACCTCTGAACCATGAGG+TGG 0.673055 5_3:-1701419 None:intergenic
AGTGCTCTAAGCCTACAGAT+GGG 0.674526 5_3:-1705716 None:intergenic
GGTTCAGAGGTCTACATTGG+GGG 0.681072 5_3:+1701428 Msa0790880:CDS
ACCATACCATAACCAAGAGG+AGG 0.682760 5_3:-1704536 None:intergenic
GTTCCATGAGGTATGGACCA+AGG 0.688815 5_3:-1700972 None:intergenic
TGATCAAGAGGAATCAAGCG+AGG 0.690783 5_3:+1701256 Msa0790880:CDS
GCTCCCGGACCATACATCAG+TGG 0.700475 5_3:-1705152 None:intergenic
ATGAAGGGGAAAGAAGCCAA+AGG 0.709242 5_3:+1701601 Msa0790880:CDS
CATGTAATAGGTCACCTGAG+AGG 0.716127 5_3:-1702381 None:intergenic
TGAGCAGGTAGATCTTGATG+GGG 0.733370 5_3:+1701229 Msa0790880:CDS
ATGTAGACCTCTGAACCATG+AGG 0.739451 5_3:-1701422 None:intergenic
CCAACCATACCATAACCAAG+AGG 0.748224 5_3:-1704539 None:intergenic
CGAAATTCAGAGTCACCAGG+GGG 0.748282 5_3:+1701173 Msa0790880:CDS
ACGAATTCACTATTTCTCGG+CGG 0.751684 5_3:-1699605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTTTTTTTTTTGTTG+TGG - chr5_3:1700084-1700103 None:intergenic 15.0%
!! AACATACATAATTACAATAA+AGG - chr5_3:1700683-1700702 None:intergenic 15.0%
!! ACATATAATAGAAAAATTGT+TGG - chr5_3:1702042-1702061 None:intergenic 15.0%
!! ATAGTTTAAGTAACAAAAAA+AGG - chr5_3:1702103-1702122 None:intergenic 15.0%
!!! AGAAGTAACTTTTTTTTTTA+TGG - chr5_3:1703197-1703216 None:intergenic 15.0%
!! GAATAAATTTAGAAACAAAT+TGG + chr5_3:1703692-1703711 Msa0790880:intron 15.0%
!! AAAGAAATCAATAATTCATT+AGG - chr5_3:1704042-1704061 None:intergenic 15.0%
!!! AATTTTTATGTTTCTTCTAA+AGG - chr5_3:1704740-1704759 None:intergenic 15.0%
!! ATTCTATTGAATATCTTTAT+GGG + chr5_3:1705014-1705033 Msa0790880:intron 15.0%
!!! TTTTATTCTTGTAATTTGTA+AGG + chr5_3:1705797-1705816 Msa0790880:three_prime_UTR 15.0%
!!! CTTTTTTTTTTGGATAAACA+TGG + chr5_3:1699894-1699913 Msa0790880:intron 20.0%
!! TATAAGGTAAAAAAAAGATG+AGG - chr5_3:1699996-1700015 None:intergenic 20.0%
!!! AATCTAGAGATTTTCTTTAA+AGG + chr5_3:1700020-1700039 Msa0790880:intron 20.0%
!!! TTTTTTTTTCAAAAACAGAG+AGG - chr5_3:1700144-1700163 None:intergenic 20.0%
!!! TTATTTTGAAGTGTTTGTTT+AGG - chr5_3:1700183-1700202 None:intergenic 20.0%
!! AAAAATAAAGTAAGAACAAC+AGG + chr5_3:1700455-1700474 Msa0790880:intron 20.0%
!!! TTTTTTCATTTATAAACGTG+TGG + chr5_3:1700706-1700725 Msa0790880:intron 20.0%
!!! AAACTTCTGAAAAAGATTTA+AGG + chr5_3:1701462-1701481 Msa0790880:CDS 20.0%
!!! AACTTCTGAAAAAGATTTAA+GGG + chr5_3:1701463-1701482 Msa0790880:CDS 20.0%
!!! TTGTCATTTTCTGTAATATT+TGG + chr5_3:1701721-1701740 Msa0790880:intron 20.0%
!!! AAATATTTTATCCATTAAGC+TGG + chr5_3:1701819-1701838 Msa0790880:intron 20.0%
!! TTAAGTAACAAAAAAAGGAA+AGG - chr5_3:1702098-1702117 None:intergenic 20.0%
!! AATGTACAAAATTGAAAGTT+GGG - chr5_3:1702736-1702755 None:intergenic 20.0%
!! TAATGTACAAAATTGAAAGT+TGG - chr5_3:1702737-1702756 None:intergenic 20.0%
!!! ATTTTGTACATTACCATAAA+TGG + chr5_3:1702744-1702763 Msa0790880:intron 20.0%
!! TTGAAATGTTTAAACAAACA+CGG + chr5_3:1703411-1703430 Msa0790880:intron 20.0%
!! TATTAAGGTTAAGGTAAAAA+TGG - chr5_3:1703728-1703747 None:intergenic 20.0%
!!! TTTTACCTTAACCTTAATAA+TGG + chr5_3:1703729-1703748 Msa0790880:intron 20.0%
!! TCATTAATCTCAAAAAAATG+AGG + chr5_3:1704655-1704674 Msa0790880:intron 20.0%
!! CATTAATCTCAAAAAAATGA+GGG + chr5_3:1704656-1704675 Msa0790880:intron 20.0%
!! CATTCTATTGAATATCTTTA+TGG + chr5_3:1705013-1705032 Msa0790880:intron 20.0%
!! TTCTATTGAATATCTTTATG+GGG + chr5_3:1705015-1705034 Msa0790880:intron 20.0%
!! TACATTAGTAAGGATTATAT+CGG - chr5_3:1705499-1705518 None:intergenic 20.0%
!! AATAAAAAAAACTTCACTCA+CGG - chr5_3:1705784-1705803 None:intergenic 20.0%
! TAAATAGAACAATCATGCTA+TGG + chr5_3:1699826-1699845 Msa0790880:intron 25.0%
!!! CATAGCATAGCTTTTTTTTT+TGG + chr5_3:1699884-1699903 Msa0790880:intron 25.0%
!! GTAATGTTTAAGTTCATGTT+TGG + chr5_3:1699948-1699967 Msa0790880:intron 25.0%
! TTAAGTTCATGTTTGGATTA+CGG + chr5_3:1699955-1699974 Msa0790880:intron 25.0%
! AATCTCTAGATTACAGTATA+AGG - chr5_3:1700012-1700031 None:intergenic 25.0%
!!! GTTTGTTTAGGATTTTTTTG+GGG - chr5_3:1700249-1700268 None:intergenic 25.0%
!!! CGTTTGTTTAGGATTTTTTT+GGG - chr5_3:1700250-1700269 None:intergenic 25.0%
!! TTTTTATAGCAGAATCACAT+TGG + chr5_3:1700285-1700304 Msa0790880:intron 25.0%
!!! CATTGGTTTAAATTTAGACA+TGG + chr5_3:1700302-1700321 Msa0790880:intron 25.0%
! TAGTTATACCACAATTTAAC+TGG + chr5_3:1700799-1700818 Msa0790880:intron 25.0%
! ATTCTGAATGAAAAATCAAG+AGG - chr5_3:1700911-1700930 None:intergenic 25.0%
!! TCATTTTCTGTAATATTTGG+TGG + chr5_3:1701724-1701743 Msa0790880:intron 25.0%
! AACTGATTATTAACAAGTCA+TGG + chr5_3:1701757-1701776 Msa0790880:intron 25.0%
! TGGTATAAAACTCATGTAAT+AGG - chr5_3:1702396-1702415 None:intergenic 25.0%
!! TTTTTCTCTTTATTACCTTG+CGG - chr5_3:1702452-1702471 None:intergenic 25.0%
! AAGAGAAAAAACTTAAGTGT+AGG + chr5_3:1702462-1702481 Msa0790880:intron 25.0%
!! TGTTGGAAATGTTTGAAATA+TGG - chr5_3:1702553-1702572 None:intergenic 25.0%
! AAGTAAAATGGAAGTAGAAT+AGG - chr5_3:1702582-1702601 None:intergenic 25.0%
! TAGGTTAAGATTGAAAAAAG+GGG - chr5_3:1702612-1702631 None:intergenic 25.0%
! CTAGGTTAAGATTGAAAAAA+GGG - chr5_3:1702613-1702632 None:intergenic 25.0%
! TCTAGGTTAAGATTGAAAAA+AGG - chr5_3:1702614-1702633 None:intergenic 25.0%
!! ATGTAATTTTCAAAATGCAC+AGG + chr5_3:1702703-1702722 Msa0790880:intron 25.0%
! ATGTACAAAATTGAAAGTTG+GGG - chr5_3:1702735-1702754 None:intergenic 25.0%
!!! TCAATTTTTGGACAAAAATC+AGG + chr5_3:1702785-1702804 Msa0790880:intron 25.0%
!! ATGTGACAAATTGAAGTTTT+GGG + chr5_3:1703104-1703123 Msa0790880:intron 25.0%
! ATTCTTCCATTTATTGAAAG+TGG + chr5_3:1703129-1703148 Msa0790880:intron 25.0%
!! ATACTCTAATGAGATGTTTT+AGG - chr5_3:1703521-1703540 None:intergenic 25.0%
! TTACATGATCTTAATTAGCA+TGG + chr5_3:1703772-1703791 Msa0790880:intron 25.0%
! AATAATTCATTAGGAACAAC+AGG - chr5_3:1704033-1704052 None:intergenic 25.0%
! TGGAAAACAGTATTCAAAAA+GGG - chr5_3:1704360-1704379 None:intergenic 25.0%
! TTGGAAAACAGTATTCAAAA+AGG - chr5_3:1704361-1704380 None:intergenic 25.0%
! TGTCATTAAGAAACATAGAT+TGG - chr5_3:1704380-1704399 None:intergenic 25.0%
! CAAAAAAGACTAAAACTAGA+AGG - chr5_3:1704632-1704651 None:intergenic 25.0%
! TTTCTTCAATTGATTGTTGA+TGG + chr5_3:1704860-1704879 Msa0790880:intron 25.0%
! TTCTTCAATTGATTGTTGAT+GGG + chr5_3:1704861-1704880 Msa0790880:intron 25.0%
! TTAAGTGTTCGAAATTTCAA+TGG + chr5_3:1704977-1704996 Msa0790880:intron 25.0%
! TTATTAAGCCTAAAAGAACT+TGG + chr5_3:1705070-1705089 Msa0790880:intron 25.0%
! ATGTATTGTAAGTTTCATCT+TGG + chr5_3:1705231-1705250 Msa0790880:intron 25.0%
! TAGGAACAATTACATTAGTA+AGG - chr5_3:1705509-1705528 None:intergenic 25.0%
! TCAACTAGTTCAAACAAATA+GGG + chr5_3:1705757-1705776 Msa0790880:three_prime_UTR 25.0%
!! TTTAAGTCTAAGATTCTACT+TGG + chr5_3:1705840-1705859 Msa0790880:three_prime_UTR 25.0%
!! GAGTTGATGTTGATGTATAA+AGG + chr5_3:1699536-1699555 Msa0790880:five_prime_UTR 30.0%
AAAAAAAGATGAGGTTTGTG+AGG - chr5_3:1699987-1700006 None:intergenic 30.0%
!!! GCGTTTGTTTAGGATTTTTT+TGG - chr5_3:1700251-1700270 None:intergenic 30.0%
ATGGTTTGATAGGAGAATAA+GGG - chr5_3:1700584-1700603 None:intergenic 30.0%
GGATAGCATATTTGGATAAT+GGG - chr5_3:1700616-1700635 None:intergenic 30.0%
AGGATAGCATATTTGGATAA+TGG - chr5_3:1700617-1700636 None:intergenic 30.0%
TATCATACAATGAAGCTCAT+AGG - chr5_3:1700637-1700656 None:intergenic 30.0%
TTGTGGTATAACTATTTGTC+AGG - chr5_3:1700793-1700812 None:intergenic 30.0%
!! AATTTTGGCCAGTTAAATTG+TGG - chr5_3:1700810-1700829 None:intergenic 30.0%
! TTTAACTGGCCAAAATTTTC+TGG + chr5_3:1700813-1700832 Msa0790880:five_prime_UTR 30.0%
! TTAACTGGCCAAAATTTTCT+GGG + chr5_3:1700814-1700833 Msa0790880:five_prime_UTR 30.0%
TTTAGACAGTCATGTAAAAG+GGG - chr5_3:1701553-1701572 None:intergenic 30.0%
GTTTAGACAGTCATGTAAAA+GGG - chr5_3:1701554-1701573 None:intergenic 30.0%
TTACCTATGCAAAAGTCAAT+CGG - chr5_3:1701576-1701595 None:intergenic 30.0%
!! ATTGACTTTTGCATAGGTAA+GGG + chr5_3:1701576-1701595 Msa0790880:intron 30.0%
!! ACTCTGAATTCAAGGTATTT+TGG + chr5_3:1701686-1701705 Msa0790880:intron 30.0%
TAAATATGAAACAGCTAGCT+AGG - chr5_3:1702192-1702211 None:intergenic 30.0%
! TTTTCTCTTTATTACCTTGC+GGG - chr5_3:1702451-1702470 None:intergenic 30.0%
TTGTTATATCTGTTTGTGTG+TGG + chr5_3:1702485-1702504 Msa0790880:intron 30.0%
AATATGGCAGTGGAATAATA+TGG - chr5_3:1702537-1702556 None:intergenic 30.0%
! AAATGTTTGAAATATGGCAG+TGG - chr5_3:1702547-1702566 None:intergenic 30.0%
AGTAGAATAGGTTATGTTGT+TGG - chr5_3:1702570-1702589 None:intergenic 30.0%
TTAAGATTGAAAAAAGGGGT+GGG - chr5_3:1702608-1702627 None:intergenic 30.0%
!!! TTTTTTTCATGTCAAGTGAC+TGG - chr5_3:1702816-1702835 None:intergenic 30.0%
TCACTTGACATGAAAAAAAG+AGG + chr5_3:1702817-1702836 Msa0790880:intron 30.0%
! GAAAAAAAGAGGTACATGAA+TGG + chr5_3:1702828-1702847 Msa0790880:intron 30.0%
!! TGGGTTTTATAATGGTACAT+TGG - chr5_3:1702872-1702891 None:intergenic 30.0%
!! TGTCAAAGTGGGTTTTATAA+TGG - chr5_3:1702880-1702899 None:intergenic 30.0%
!! TTTTTCAAAGCTCAGTGTAA+GGG - chr5_3:1702907-1702926 None:intergenic 30.0%
!! ATTTTTCAAAGCTCAGTGTA+AGG - chr5_3:1702908-1702927 None:intergenic 30.0%
ACTTCTTCTAATACGTATCA+TGG + chr5_3:1702982-1703001 Msa0790880:intron 30.0%
! CATGTGACAAATTGAAGTTT+TGG + chr5_3:1703103-1703122 Msa0790880:intron 30.0%
AGAAATAATTTGACTGCGTA+TGG - chr5_3:1703331-1703350 None:intergenic 30.0%
AAGAAAGCTATTTAGACTAC+AGG + chr5_3:1703603-1703622 Msa0790880:intron 30.0%
GTGATCCATTATTAAGGTTA+AGG - chr5_3:1703737-1703756 None:intergenic 30.0%
TTACTGGTGATCCATTATTA+AGG - chr5_3:1703743-1703762 None:intergenic 30.0%
CTAATTAAGATCATGTAACC+TGG - chr5_3:1703770-1703789 None:intergenic 30.0%
TTAATGTTGGCAACAAAATG+AGG - chr5_3:1703894-1703913 None:intergenic 30.0%
CAGAAAGCAAACATTAATGT+TGG - chr5_3:1703907-1703926 None:intergenic 30.0%
!! AATGAAGGCATTGAAGAATA+CGG + chr5_3:1704303-1704322 Msa0790880:CDS 30.0%
AATCTCAAAAAAATGAGGGT+TGG + chr5_3:1704660-1704679 Msa0790880:intron 30.0%
ATCTCAAAAAAATGAGGGTT+GGG + chr5_3:1704661-1704680 Msa0790880:intron 30.0%
! TCGTGAAAATTTTATCCAGT+TGG + chr5_3:1704771-1704790 Msa0790880:intron 30.0%
! CGTGAAAATTTTATCCAGTT+GGG + chr5_3:1704772-1704791 Msa0790880:intron 30.0%
TTGAACTGTATCAATTTCAC+TGG + chr5_3:1704806-1704825 Msa0790880:intron 30.0%
AAGAGGTTAACATCAATTCT+TGG + chr5_3:1704914-1704933 Msa0790880:intron 30.0%
TATTTGTTTATGCTCTTGCA+TGG + chr5_3:1705268-1705287 Msa0790880:intron 30.0%
TTGTTTCACTAGCATAACAA+CGG + chr5_3:1705309-1705328 Msa0790880:intron 30.0%
GATAGAAACTCAACTATAGA+TGG - chr5_3:1705337-1705356 None:intergenic 30.0%
ACTAATGTAATTGTTCCTAC+TGG + chr5_3:1705510-1705529 Msa0790880:exon 30.0%
! ACAGATTAATTTTCGGCTTT+GGG - chr5_3:1705544-1705563 None:intergenic 30.0%
! ACATGCCACAGATTAATTTT+CGG - chr5_3:1705551-1705570 None:intergenic 30.0%
TATGAGAAAATTTGCAGAAC+AGG + chr5_3:1705570-1705589 Msa0790880:three_prime_UTR 30.0%
AGATAAGGGTAAAAAATGCA+AGG - chr5_3:1705650-1705669 None:intergenic 30.0%
AATAAATTGCTTCCCATCAT+AGG - chr5_3:1705676-1705695 None:intergenic 30.0%
CTCAACTAGTTCAAACAAAT+AGG + chr5_3:1705756-1705775 Msa0790880:three_prime_UTR 30.0%
CAACTAGTTCAAACAAATAG+GGG + chr5_3:1705758-1705777 Msa0790880:three_prime_UTR 30.0%
! TGGACGAATTCACTATTTCT+CGG - chr5_3:1699611-1699630 None:intergenic 35.0%
TAGAAGCTCTACAACTACAA+TGG - chr5_3:1699691-1699710 None:intergenic 35.0%
! CAATATCTAGAGCTTAAGAG+GGG - chr5_3:1699755-1699774 None:intergenic 35.0%
! GCAATATCTAGAGCTTAAGA+GGG - chr5_3:1699756-1699775 None:intergenic 35.0%
! AGCAATATCTAGAGCTTAAG+AGG - chr5_3:1699757-1699776 None:intergenic 35.0%
TGCTATAAAAACACACCCAA+AGG - chr5_3:1700276-1700295 None:intergenic 35.0%
CATGGTTTGATAGGAGAATA+AGG - chr5_3:1700585-1700604 None:intergenic 35.0%
CTTATTCTCCTATCAAACCA+TGG + chr5_3:1700583-1700602 Msa0790880:intron 35.0%
AGCTCATAGGATAGCATATT+TGG - chr5_3:1700624-1700643 None:intergenic 35.0%
AATATACACAGAGGAAGAGA+GGG - chr5_3:1700765-1700784 None:intergenic 35.0%
AAATATACACAGAGGAAGAG+AGG - chr5_3:1700766-1700785 None:intergenic 35.0%
!! CCAAAATTTTCTGGGAAACT+CGG + chr5_3:1700822-1700841 Msa0790880:five_prime_UTR 35.0%
AGAGGATAACAATGCTCAAA+AGG - chr5_3:1700893-1700912 None:intergenic 35.0%
GCAACAAAAGTAAGAAAGAC+AGG - chr5_3:1700943-1700962 None:intergenic 35.0%
TTGATTGAAACTGTTCCATG+AGG - chr5_3:1700987-1701006 None:intergenic 35.0%
AAGAAGAGAGTTTGCAAATG+TGG - chr5_3:1701053-1701072 None:intergenic 35.0%
TTCTAGATTCATAGAATGCC+TGG + chr5_3:1701125-1701144 Msa0790880:exon 35.0%
TCTAGATTCATAGAATGCCT+GGG + chr5_3:1701126-1701145 Msa0790880:exon 35.0%
AGTTGAGTATGAAGAAGTAG+AGG + chr5_3:1701283-1701302 Msa0790880:CDS 35.0%
!!! TCTTTTTCAGAAGTTTCGTG+AGG - chr5_3:1701458-1701477 None:intergenic 35.0%
TTAGACAGTCATGTAAAAGG+GGG - chr5_3:1701552-1701571 None:intergenic 35.0%
GGTTTAGACAGTCATGTAAA+AGG - chr5_3:1701555-1701574 None:intergenic 35.0%
!! AAACCGATTGACTTTTGCAT+AGG + chr5_3:1701570-1701589 Msa0790880:intron 35.0%
!! GATTGACTTTTGCATAGGTA+AGG + chr5_3:1701575-1701594 Msa0790880:intron 35.0%
! TTTTGTGACCTTCAAGACAA+AGG + chr5_3:1701630-1701649 Msa0790880:CDS 35.0%
TGCTAATTCCTTTGTCTTGA+AGG - chr5_3:1701641-1701660 None:intergenic 35.0%
GACAAAGGAATTAGCATCTA+AGG + chr5_3:1701645-1701664 Msa0790880:CDS 35.0%
GTTGAACAACTCTGAATTCA+AGG + chr5_3:1701678-1701697 Msa0790880:CDS 35.0%
!!! AGCACTTTATTTTTCTTCCC+TGG - chr5_3:1701892-1701911 None:intergenic 35.0%
!! GTTAAGCATCGGTTATTCAT+TGG + chr5_3:1701923-1701942 Msa0790880:CDS 35.0%
!! TTGGTAATGTTCCTAAAGAG+TGG + chr5_3:1701942-1701961 Msa0790880:CDS 35.0%
GACTGTAGAAGATATGAAGA+AGG + chr5_3:1701964-1701983 Msa0790880:CDS 35.0%
TATGAAGTGTGTTGCATGTT+GGG + chr5_3:1702120-1702139 Msa0790880:intron 35.0%
ATGTTGGGTAATATTTGCCT+TGG + chr5_3:1702135-1702154 Msa0790880:intron 35.0%
! GCTAGCTGTTTCATATTTAC+AGG + chr5_3:1702193-1702212 Msa0790880:intron 35.0%
TAAAAGCAAATCCCCGATTA+CGG - chr5_3:1702235-1702254 None:intergenic 35.0%
ATGCTTGTGCAGAATATTCA+AGG + chr5_3:1702270-1702289 Msa0790880:CDS 35.0%
ATGATGATTCAGAATTCCTC+GGG - chr5_3:1702358-1702377 None:intergenic 35.0%
GATGATGATTCAGAATTCCT+CGG - chr5_3:1702359-1702378 None:intergenic 35.0%
TAAGATTGAAAAAAGGGGTG+GGG - chr5_3:1702607-1702626 None:intergenic 35.0%
GTTAAGATTGAAAAAAGGGG+TGG - chr5_3:1702609-1702628 None:intergenic 35.0%
TTCTGCTATTGTCTATGTCT+AGG - chr5_3:1702631-1702650 None:intergenic 35.0%
TAGACATAGACAATAGCAGA+AGG + chr5_3:1702630-1702649 Msa0790880:intron 35.0%
GTACTTAGAGCAAAGTTGAA+GGG - chr5_3:1702674-1702693 None:intergenic 35.0%
TGTACTTAGAGCAAAGTTGA+AGG - chr5_3:1702675-1702694 None:intergenic 35.0%
!!! CCAATGGTTTTAGCCATTTA+TGG - chr5_3:1702760-1702779 None:intergenic 35.0%
CCATAAATGGCTAAAACCAT+TGG + chr5_3:1702757-1702776 Msa0790880:intron 35.0%
CCAAAAATTGACAAAGCCAA+TGG - chr5_3:1702776-1702795 None:intergenic 35.0%
!!! CCATTGGCTTTGTCAATTTT+TGG + chr5_3:1702773-1702792 Msa0790880:intron 35.0%
GTAAGGGATAATGTCAAAGT+GGG - chr5_3:1702891-1702910 None:intergenic 35.0%
TGTAAGGGATAATGTCAAAG+TGG - chr5_3:1702892-1702911 None:intergenic 35.0%
TATTAGAAGAAGTCTGTTGG+AGG - chr5_3:1702975-1702994 None:intergenic 35.0%
ACGTATTAGAAGAAGTCTGT+TGG - chr5_3:1702978-1702997 None:intergenic 35.0%
!! GTTAGAGTTGATGATGTTCT+TGG - chr5_3:1703012-1703031 None:intergenic 35.0%
TCAAAATGTCAGCAAGCAAT+TGG - chr5_3:1703067-1703086 None:intergenic 35.0%
!! GTCTTGCCACTTTCAATAAA+TGG - chr5_3:1703138-1703157 None:intergenic 35.0%
! ACTAAAATGCTGAGTTGAGA+GGG + chr5_3:1703156-1703175 Msa0790880:intron 35.0%
AGATGAGTCATGAGAAAGAA+TGG - chr5_3:1703307-1703326 None:intergenic 35.0%
!!! CAGTTTTGTTCTGTGTATGT+CGG - chr5_3:1703558-1703577 None:intergenic 35.0%
AACAGAGCTGAGACATAAAA+AGG + chr5_3:1703626-1703645 Msa0790880:intron 35.0%
! AAAAATAGAGCATCAAGCAG+TGG - chr5_3:1703802-1703821 None:intergenic 35.0%
!! TTTCCATTTTGTGTGCTGAT+TGG + chr5_3:1703820-1703839 Msa0790880:intron 35.0%
AAATTTCCTGATCCAGTAAG+AGG - chr5_3:1703852-1703871 None:intergenic 35.0%
TTTCGAAGAAGCGATATCTT+TGG + chr5_3:1703931-1703950 Msa0790880:intron 35.0%
TTGCAGTTGCAAATAGACAA+AGG - chr5_3:1703985-1704004 None:intergenic 35.0%
CTGCAATTAGTTGAACCAAA+TGG + chr5_3:1703999-1704018 Msa0790880:intron 35.0%
!! TAAGTTTTATAACCGTGACC+TGG + chr5_3:1704101-1704120 Msa0790880:intron 35.0%
! TCTGAGTTATGTTTTCTGGA+AGG - chr5_3:1704162-1704181 None:intergenic 35.0%
! CGATTCTGAGTTATGTTTTC+TGG - chr5_3:1704166-1704185 None:intergenic 35.0%
AAAGAGCTGTTTGAACATCA+TGG + chr5_3:1704190-1704209 Msa0790880:CDS 35.0%
TCATGGAAAGATCACAAAAG+TGG + chr5_3:1704207-1704226 Msa0790880:CDS 35.0%
!! GTTTTGTTCACTTTGCTGAT+AGG + chr5_3:1704272-1704291 Msa0790880:CDS 35.0%
! ACGGAGAAGTATGAAATTGA+TGG + chr5_3:1704322-1704341 Msa0790880:CDS 35.0%
!! AACCATCAAGTTTTCTGGAA+TGG + chr5_3:1704410-1704429 Msa0790880:intron 35.0%
TCTCAAAAAAATGAGGGTTG+GGG + chr5_3:1704662-1704681 Msa0790880:intron 35.0%
CAAAACATAAATCACCCAAC+TGG - chr5_3:1704789-1704808 None:intergenic 35.0%
! TCAATTTCACTGGTTGTAAG+TGG + chr5_3:1704816-1704835 Msa0790880:intron 35.0%
!! TGTAAGTGGTTCTGAACTTT+CGG + chr5_3:1704830-1704849 Msa0790880:intron 35.0%
! CATAAGCACCAAGTTCTTTT+AGG - chr5_3:1705081-1705100 None:intergenic 35.0%
!! AAAAGAACTTGGTGCTTATG+TGG + chr5_3:1705081-1705100 Msa0790880:intron 35.0%
! ATCTTCTTGTTTGTGACTGT+AGG + chr5_3:1705354-1705373 Msa0790880:intron 35.0%
AACGATAATAACCGTAATCG+TGG + chr5_3:1705467-1705486 Msa0790880:CDS 35.0%
!! AGATTAATTTTCGGCTTTGG+GGG - chr5_3:1705542-1705561 None:intergenic 35.0%
! CAGATTAATTTTCGGCTTTG+GGG - chr5_3:1705543-1705562 None:intergenic 35.0%
! CACAGATTAATTTTCGGCTT+TGG - chr5_3:1705545-1705564 None:intergenic 35.0%
CAAAGCCGAAAATTAATCTG+TGG + chr5_3:1705543-1705562 Msa0790880:three_prime_UTR 35.0%
AAAATTTGCAGAACAGGCAT+AGG + chr5_3:1705576-1705595 Msa0790880:three_prime_UTR 35.0%
! ACCCTTATCTTTTCCTATGA+TGG + chr5_3:1705660-1705679 Msa0790880:three_prime_UTR 35.0%
CCCATCATAGGAAAAGATAA+GGG - chr5_3:1705664-1705683 None:intergenic 35.0%
! CCCTTATCTTTTCCTATGAT+GGG + chr5_3:1705661-1705680 Msa0790880:three_prime_UTR 35.0%
TCCCATCATAGGAAAAGATA+AGG - chr5_3:1705665-1705684 None:intergenic 35.0%
ATAATCTTACTCCCATCTGT+AGG + chr5_3:1705705-1705724 Msa0790880:three_prime_UTR 35.0%
!!! ATTCTACTTGGTGCCAATTT+TGG + chr5_3:1705852-1705871 Msa0790880:three_prime_UTR 35.0%
! TTAAACTAGCCTGCCAAAAT+TGG - chr5_3:1705868-1705887 None:intergenic 35.0%
! ACGAATTCACTATTTCTCGG+CGG - chr5_3:1699608-1699627 None:intergenic 40.0%
AACCCTAAACTCGTAATCGT+TGG - chr5_3:1699654-1699673 None:intergenic 40.0%
CTTCGATTTCACTTCCAATC+AGG + chr5_3:1699717-1699736 Msa0790880:five_prime_UTR 40.0%
TAGAGCTTAAGAGGGGAAAA+CGG - chr5_3:1699748-1699767 None:intergenic 40.0%
TCCTAAACAAACGCATCCTT+TGG + chr5_3:1700257-1700276 Msa0790880:intron 40.0%
CCTAAACAAACGCATCCTTT+GGG + chr5_3:1700258-1700277 Msa0790880:intron 40.0%
ACATGGTTCTTGTCTCAGAA+TGG + chr5_3:1700319-1700338 Msa0790880:intron 40.0%
TCAAGAAGTAACGCTTCCTT+AGG + chr5_3:1700353-1700372 Msa0790880:intron 40.0%
CAAGAAGTAACGCTTCCTTA+GGG + chr5_3:1700354-1700373 Msa0790880:intron 40.0%
!! TGTGTTTGCGAGTTGGATTT+TGG + chr5_3:1700377-1700396 Msa0790880:intron 40.0%
!! TTTGCGAGTTGGATTTTGGA+GGG + chr5_3:1700381-1700400 Msa0790880:intron 40.0%
TTTGGGAGTTGAATTGTGGA+GGG - chr5_3:1700557-1700576 None:intergenic 40.0%
TGTGTTTGGGAGTTGAATTG+TGG - chr5_3:1700561-1700580 None:intergenic 40.0%
! AGGAGAATAAGGGTGTGTTT+GGG - chr5_3:1700574-1700593 None:intergenic 40.0%
! TAGGAGAATAAGGGTGTGTT+TGG - chr5_3:1700575-1700594 None:intergenic 40.0%
GTTGCAAACCATGGTTTGAT+AGG - chr5_3:1700594-1700613 None:intergenic 40.0%
ATATACACAGAGGAAGAGAG+GGG - chr5_3:1700764-1700783 None:intergenic 40.0%
CAGGAGACAAATATACACAG+AGG - chr5_3:1700774-1700793 None:intergenic 40.0%
! CCGAGTTTCCCAGAAAATTT+TGG - chr5_3:1700825-1700844 None:intergenic 40.0%
TTTGTTGCTATGCTACTCCT+TGG + chr5_3:1700955-1700974 Msa0790880:five_prime_UTR 40.0%
TGAAACTGTTCCATGAGGTA+TGG - chr5_3:1700982-1701001 None:intergenic 40.0%
TCTTACTCTGCTATTCCATC+TGG + chr5_3:1701010-1701029 Msa0790880:five_prime_UTR 40.0%
ATGTGGAAAGGTGGAAACAA+TGG - chr5_3:1701036-1701055 None:intergenic 40.0%
AGTTTGCAAATGTGGAAAGG+TGG - chr5_3:1701045-1701064 None:intergenic 40.0%
GAGAGTTTGCAAATGTGGAA+AGG - chr5_3:1701048-1701067 None:intergenic 40.0%
CTCTCTTCTTTGTATGCTTC+TGG + chr5_3:1701063-1701082 Msa0790880:five_prime_UTR 40.0%
TCTAGAAAAGCAAGCTTGCA+GGG - chr5_3:1701112-1701131 None:intergenic 40.0%
ATCTAGAAAAGCAAGCTTGC+AGG - chr5_3:1701113-1701132 None:intergenic 40.0%
TGAGTATGAAGAAGTAGAGG+TGG + chr5_3:1701286-1701305 Msa0790880:CDS 40.0%
AGAAGAAGAGGAAGAAGTAG+AGG + chr5_3:1701328-1701347 Msa0790880:CDS 40.0%
GCCTCATCTTCTTCATCTAA+GGG - chr5_3:1701365-1701384 None:intergenic 40.0%
AGCCTCATCTTCTTCATCTA+AGG - chr5_3:1701366-1701385 None:intergenic 40.0%
ATGGTTCAGAGGTCTACATT+GGG + chr5_3:1701426-1701445 Msa0790880:CDS 40.0%
! AAGGGTCTTTTGTCAATCTG+TGG + chr5_3:1701481-1701500 Msa0790880:CDS 40.0%
! AGGGTCTTTTGTCAATCTGT+GGG + chr5_3:1701482-1701501 Msa0790880:CDS 40.0%
TGCATAGGTAAGGGTTATGA+AGG + chr5_3:1701585-1701604 Msa0790880:intron 40.0%
GCATAGGTAAGGGTTATGAA+GGG + chr5_3:1701586-1701605 Msa0790880:intron 40.0%
CATAGGTAAGGGTTATGAAG+GGG + chr5_3:1701587-1701606 Msa0790880:intron 40.0%
! GGTCACAAAAGCATAACCTT+TGG - chr5_3:1701620-1701639 None:intergenic 40.0%
CACCATCTCAAGTTAAGCAT+CGG + chr5_3:1701912-1701931 Msa0790880:CDS 40.0%
! AACCGATGCTTAACTTGAGA+TGG - chr5_3:1701917-1701936 None:intergenic 40.0%
TCTTCTACAGTCCACTCTTT+AGG - chr5_3:1701956-1701975 None:intergenic 40.0%
TATGAAGAAGGTTGTTGCCA+AGG + chr5_3:1701976-1701995 Msa0790880:CDS 40.0%
CTATGAAGTGTGTTGCATGT+TGG + chr5_3:1702119-1702138 Msa0790880:intron 40.0%
ACACAAAATGCAAGTAGCCA+AGG - chr5_3:1702155-1702174 None:intergenic 40.0%
ATAACGATGCAATAGTGAGC+TGG + chr5_3:1702327-1702346 Msa0790880:CDS 40.0%
TAACGATGCAATAGTGAGCT+GGG + chr5_3:1702328-1702347 Msa0790880:CDS 40.0%
TGAATCATCATCATCCTCTC+AGG + chr5_3:1702367-1702386 Msa0790880:CDS 40.0%
AATGGCTGATGTAGGCAATT+TGG + chr5_3:1702846-1702865 Msa0790880:intron 40.0%
TAAACCGCAAGGGAATTTCA+GGG - chr5_3:1702946-1702965 None:intergenic 40.0%
ATAAACCGCAAGGGAATTTC+AGG - chr5_3:1702947-1702966 None:intergenic 40.0%
TGAAATTCCCTTGCGGTTTA+TGG + chr5_3:1702946-1702965 Msa0790880:intron 40.0%
CTAACCACATCAACTGTCAA+AGG + chr5_3:1703027-1703046 Msa0790880:intron 40.0%
! TTGTCCTTTGACAGTTGATG+TGG - chr5_3:1703034-1703053 None:intergenic 40.0%
! GACTAAAATGCTGAGTTGAG+AGG + chr5_3:1703155-1703174 Msa0790880:intron 40.0%
! CTAAAATGCTGAGTTGAGAG+GGG + chr5_3:1703157-1703176 Msa0790880:intron 40.0%
! TAAAATGCTGAGTTGAGAGG+GGG + chr5_3:1703158-1703177 Msa0790880:intron 40.0%
AGAGCTGAGACATAAAAAGG+AGG + chr5_3:1703629-1703648 Msa0790880:intron 40.0%
CATGTAACCTGGCAATTTAC+TGG - chr5_3:1703759-1703778 None:intergenic 40.0%
! CAACAGGAAAGTACACCATT+TGG - chr5_3:1704017-1704036 None:intergenic 40.0%
!! TTTTCTTGTCCAGCTTTAGC+AGG - chr5_3:1704241-1704260 None:intergenic 40.0%
GGACAAGAAAAGAGCAGATA+TGG + chr5_3:1704250-1704269 Msa0790880:CDS 40.0%
TGATAGGTCAAGTGCAATGA+AGG + chr5_3:1704288-1704307 Msa0790880:CDS 40.0%
GTTTCTTAATGACAGCGAAC+TGG + chr5_3:1704386-1704405 Msa0790880:intron 40.0%
! CTGGTAACCATCAAGTTTTC+TGG + chr5_3:1704405-1704424 Msa0790880:intron 40.0%
GTCCATTCCAGAAAACTTGA+TGG - chr5_3:1704415-1704434 None:intergenic 40.0%
GAAGGTAAAGAGCAAGTTAC+CGG - chr5_3:1704614-1704633 None:intergenic 40.0%
! ATTGTAGCCAGTGTACTGAT+TGG - chr5_3:1704708-1704727 None:intergenic 40.0%
! ATGCCAATGCTTTTACCAGA+TGG + chr5_3:1705197-1705216 Msa0790880:CDS 40.0%
! CTTCCATCTGGTAAAAGCAT+TGG - chr5_3:1705203-1705222 None:intergenic 40.0%
! CAATGCTTTTACCAGATGGA+AGG + chr5_3:1705201-1705220 Msa0790880:CDS 40.0%
ACATATGCAATCCTTCCATC+TGG - chr5_3:1705215-1705234 None:intergenic 40.0%
GTTTATGCTCTTGCATGGTT+AGG + chr5_3:1705273-1705292 Msa0790880:intron 40.0%
AATAACCGTAATCGTGGTCA+TGG + chr5_3:1705473-1705492 Msa0790880:CDS 40.0%
!! GGTTTTACGTTGGGCCTTAT+GGG - chr5_3:1699571-1699590 None:intergenic 45.0%
!! GTCCAGATGGGTTTTACGTT+GGG - chr5_3:1699580-1699599 None:intergenic 45.0%
!! TGTCCAGATGGGTTTTACGT+TGG - chr5_3:1699581-1699600 None:intergenic 45.0%
CGCCAACGATTACGAGTTTA+GGG + chr5_3:1699649-1699668 Msa0790880:five_prime_UTR 45.0%
TGGAAGTGAAATCGAAGTCG+AGG - chr5_3:1699714-1699733 None:intergenic 45.0%
!! GGAAAACGGAAGTACCTGAT+TGG - chr5_3:1699734-1699753 None:intergenic 45.0%
CCCAAAGGATGCGTTTGTTT+AGG - chr5_3:1700261-1700280 None:intergenic 45.0%
!! GTTTGCGAGTTGGATTTTGG+AGG + chr5_3:1700380-1700399 Msa0790880:intron 45.0%
!! TTGCGAGTTGGATTTTGGAG+GGG + chr5_3:1700382-1700401 Msa0790880:intron 45.0%
GTTTGGGAGTTGAATTGTGG+AGG - chr5_3:1700558-1700577 None:intergenic 45.0%
!! GGATAATGGGTTGCAAACCA+TGG - chr5_3:1700603-1700622 None:intergenic 45.0%
! GCATCTTTTTGTCTTGTCCC+AGG - chr5_3:1701146-1701165 None:intergenic 45.0%
! CCAGAATCTGTGGGTTTTTC+AGG - chr5_3:1701209-1701228 None:intergenic 45.0%
CCTGAAAAACCCACAGATTC+TGG + chr5_3:1701206-1701225 Msa0790880:CDS 45.0%
GTGAGCAGGTAGATCTTGAT+GGG + chr5_3:1701228-1701247 Msa0790880:CDS 45.0%
TGAGCAGGTAGATCTTGATG+GGG + chr5_3:1701229-1701248 Msa0790880:CDS 45.0%
TGATGGGGACAATGATCAAG+AGG + chr5_3:1701244-1701263 Msa0790880:CDS 45.0%
TGATCAAGAGGAATCAAGCG+AGG + chr5_3:1701256-1701275 Msa0790880:CDS 45.0%
GTATGAAGAAGTAGAGGTGG+AGG + chr5_3:1701289-1701308 Msa0790880:CDS 45.0%
AGTGGAAGAGGAAGAAGAAG+AGG + chr5_3:1701316-1701335 Msa0790880:CDS 45.0%
GCCCTTAGATGAAGAAGATG+AGG + chr5_3:1701361-1701380 Msa0790880:CDS 45.0%
ATGTAGACCTCTGAACCATG+AGG - chr5_3:1701425-1701444 None:intergenic 45.0%
CATGGTTCAGAGGTCTACAT+TGG + chr5_3:1701425-1701444 Msa0790880:CDS 45.0%
TGGTTCAGAGGTCTACATTG+GGG + chr5_3:1701427-1701446 Msa0790880:CDS 45.0%
TTGTCAATCTGTGGGAGAAG+TGG + chr5_3:1701490-1701509 Msa0790880:CDS 45.0%
ATGAAGGGGAAAGAAGCCAA+AGG + chr5_3:1701601-1701620 Msa0790880:CDS 45.0%
! ATTAGCATCTAAGGCTCTCG+AGG + chr5_3:1701654-1701673 Msa0790880:CDS 45.0%
ACTACATGCAGCCAGCTTAA+TGG - chr5_3:1701833-1701852 None:intergenic 45.0%
AAGAAGGTTGTTGCCAAGGT+TGG + chr5_3:1701980-1701999 Msa0790880:CDS 45.0%
CATTTCGGTGGAACTGTTGA+AGG + chr5_3:1702012-1702031 Msa0790880:CDS 45.0%
TGAAACAGCTAGCTAGGTCA+AGG - chr5_3:1702186-1702205 None:intergenic 45.0%
! CACAGAGTTCTAGCCGTAAT+CGG + chr5_3:1702219-1702238 Msa0790880:CDS 45.0%
! ACAGAGTTCTAGCCGTAATC+GGG + chr5_3:1702220-1702239 Msa0790880:CDS 45.0%
CATGTAATAGGTCACCTGAG+AGG - chr5_3:1702384-1702403 None:intergenic 45.0%
TTCGTAAATCACTTCCCGCA+AGG + chr5_3:1702434-1702453 Msa0790880:intron 45.0%
TCTGTTTGTGTGTGGCTGAA+TGG + chr5_3:1702493-1702512 Msa0790880:intron 45.0%
GGTACATGAATGGCTGATGT+AGG + chr5_3:1702838-1702857 Msa0790880:intron 45.0%
ACAACCCTGAAATTCCCTTG+CGG + chr5_3:1702939-1702958 Msa0790880:intron 45.0%
! AAAATGCTGAGTTGAGAGGG+GGG + chr5_3:1703159-1703178 Msa0790880:intron 45.0%
CTTCATCTCAGCTCTGTTCT+GGG - chr5_3:1703586-1703605 None:intergenic 45.0%
TCTTCATCTCAGCTCTGTTC+TGG - chr5_3:1703587-1703606 None:intergenic 45.0%
TGGATCACCAGTAAATTGCC+AGG + chr5_3:1703749-1703768 Msa0790880:intron 45.0%
CCTCCAATCAGCACACAAAA+TGG - chr5_3:1703826-1703845 None:intergenic 45.0%
!!! CCATTTTGTGTGCTGATTGG+AGG + chr5_3:1703823-1703842 Msa0790880:intron 45.0%
TTTCACCTGTACTAAGCACC+AGG - chr5_3:1704122-1704141 None:intergenic 45.0%
!!! CAAGTTTTCTGGAATGGACC+AGG + chr5_3:1704416-1704435 Msa0790880:intron 45.0%
GAATGGACCAGGTCAAACTT+TGG + chr5_3:1704427-1704446 Msa0790880:intron 45.0%
GAGCATTCCAAAGTTTGACC+TGG - chr5_3:1704437-1704456 None:intergenic 45.0%
GATGACTTCTGATCTGCTTG+TGG - chr5_3:1704470-1704489 None:intergenic 45.0%
CAAGCAGATCAGAAGTCATC+TGG + chr5_3:1704470-1704489 Msa0790880:CDS 45.0%
TATCCACCTCCTCTTGGTTA+TGG + chr5_3:1704530-1704549 Msa0790880:CDS 45.0%
ATACCATAACCAAGAGGAGG+TGG - chr5_3:1704536-1704555 None:intergenic 45.0%
ACCTCCTCTTGGTTATGGTA+TGG + chr5_3:1704535-1704554 Msa0790880:CDS 45.0%
ACCATACCATAACCAAGAGG+AGG - chr5_3:1704539-1704558 None:intergenic 45.0%
CCAACCATACCATAACCAAG+AGG - chr5_3:1704542-1704561 None:intergenic 45.0%
CCTCTTGGTTATGGTATGGT+TGG + chr5_3:1704539-1704558 Msa0790880:CDS 45.0%
CTTGGTTATGGTATGGTTGG+AGG + chr5_3:1704542-1704561 Msa0790880:CDS 45.0%
!! TGGAAGCATCTTCTTAGCCT+AGG - chr5_3:1704688-1704707 None:intergenic 45.0%
GATGCTTCCAATCAGTACAC+TGG + chr5_3:1704698-1704717 Msa0790880:intron 45.0%
CTCTTTCAGCCTATGATGAG+GGG - chr5_3:1704899-1704918 None:intergenic 45.0%
CCTCTTTCAGCCTATGATGA+GGG - chr5_3:1704900-1704919 None:intergenic 45.0%
ACCTCTTTCAGCCTATGATG+AGG - chr5_3:1704901-1704920 None:intergenic 45.0%
AATGTGCAGCCACTGATGTA+TGG + chr5_3:1705143-1705162 Msa0790880:intron 45.0%
GGAGCATGTTGTTGAAAACC+TGG - chr5_3:1705386-1705405 None:intergenic 45.0%
!!! TTAATTTTCGGCTTTGGGGG+AGG - chr5_3:1705539-1705558 None:intergenic 45.0%
GGTAAAAAATGCAAGGCAGC+AGG - chr5_3:1705643-1705662 None:intergenic 45.0%
! AGTGCTCTAAGCCTACAGAT+GGG - chr5_3:1705719-1705738 None:intergenic 45.0%
!!! TACTTGGTGCCAATTTTGGC+AGG + chr5_3:1705856-1705875 Msa0790880:three_prime_UTR 45.0%
!!! AAATTTTAAATTTAAATCTT+TGG - chr5_3:1702416-1702435 None:intergenic 5.0%
! TTACGTTGGGCCTTATGGGT+CGG - chr5_3:1699567-1699586 None:intergenic 50.0%
! GGGTTTTACGTTGGGCCTTA+TGG - chr5_3:1699572-1699591 None:intergenic 50.0%
! CGCGTGCTTTGTTCTTAAGG+TGG - chr5_3:1699631-1699650 None:intergenic 50.0%
! TGGCGCGTGCTTTGTTCTTA+AGG - chr5_3:1699634-1699653 None:intergenic 50.0%
GCGCCAACGATTACGAGTTT+AGG + chr5_3:1699648-1699667 Msa0790880:five_prime_UTR 50.0%
CAACTCGCAAACACACCCTA+AGG - chr5_3:1700372-1700391 None:intergenic 50.0%
CTTAGGGTGTGTTTGCGAGT+TGG + chr5_3:1700370-1700389 Msa0790880:intron 50.0%
! TTTGGAGGGGACGACTTTTG+AGG + chr5_3:1700395-1700414 Msa0790880:intron 50.0%
! TTGGAGGGGACGACTTTTGA+GGG + chr5_3:1700396-1700415 Msa0790880:intron 50.0%
ACTCCTTGGTCCATACCTCA+TGG + chr5_3:1700969-1700988 Msa0790880:five_prime_UTR 50.0%
GTTCCATGAGGTATGGACCA+AGG - chr5_3:1700975-1700994 None:intergenic 50.0%
AGGTGGAAACAATGGCCAGA+TGG - chr5_3:1701028-1701047 None:intergenic 50.0%
AGCTTGCAGGGCAACTATGA+AGG - chr5_3:1701100-1701119 None:intergenic 50.0%
CCCTGGTGACTCTGAATTTC+GGG - chr5_3:1701174-1701193 None:intergenic 50.0%
CCCGAAATTCAGAGTCACCA+GGG + chr5_3:1701171-1701190 Msa0790880:CDS 50.0%
CCCCTGGTGACTCTGAATTT+CGG - chr5_3:1701175-1701194 None:intergenic 50.0%
CCGAAATTCAGAGTCACCAG+GGG + chr5_3:1701172-1701191 Msa0790880:CDS 50.0%
CGAAATTCAGAGTCACCAGG+GGG + chr5_3:1701173-1701192 Msa0790880:CDS 50.0%
ACCTGCTCACCAGAATCTGT+GGG - chr5_3:1701218-1701237 None:intergenic 50.0%
TACCTGCTCACCAGAATCTG+TGG - chr5_3:1701219-1701238 None:intergenic 50.0%
GGTGAGCAGGTAGATCTTGA+TGG + chr5_3:1701227-1701246 Msa0790880:CDS 50.0%
AGTAGAGGTGGAGGAAGAAG+TGG + chr5_3:1701298-1701317 Msa0790880:CDS 50.0%
TAGACCTCTGAACCATGAGG+TGG - chr5_3:1701422-1701441 None:intergenic 50.0%
GGTTCAGAGGTCTACATTGG+GGG + chr5_3:1701428-1701447 Msa0790880:CDS 50.0%
TCACTCCTTTCTGCGTTTCC+AGG + chr5_3:1701871-1701890 Msa0790880:intron 50.0%
CACTCCTTTCTGCGTTTCCA+GGG + chr5_3:1701872-1701891 Msa0790880:intron 50.0%
TCTTCCCTGGAAACGCAGAA+AGG - chr5_3:1701879-1701898 None:intergenic 50.0%
GTTCCACCGAAATGACTCCA+GGG - chr5_3:1702006-1702025 None:intergenic 50.0%
AGTTCCACCGAAATGACTCC+AGG - chr5_3:1702007-1702026 None:intergenic 50.0%
CGATTACGGCTAGAACTCTG+TGG - chr5_3:1702221-1702240 None:intergenic 50.0%
! CAGAGTTCTAGCCGTAATCG+GGG + chr5_3:1702221-1702240 Msa0790880:CDS 50.0%
AGGGGTGGGGTGAAGTAAAA+TGG - chr5_3:1702594-1702613 None:intergenic 50.0%
GAGGAAGCCATAAACCGCAA+GGG - chr5_3:1702956-1702975 None:intergenic 50.0%
! AAATGCTGAGTTGAGAGGGG+GGG + chr5_3:1703160-1703179 Msa0790880:intron 50.0%
CTGTGTATGTCGGTAGAGAG+AGG - chr5_3:1703548-1703567 None:intergenic 50.0%
!! GATTGGAGGTGTCCTCTTAC+TGG + chr5_3:1703837-1703856 Msa0790880:intron 50.0%
AGGTGTCCTCTTACTGGATC+AGG + chr5_3:1703843-1703862 Msa0790880:intron 50.0%
CTGTACTAAGCACCAGGTCA+CGG - chr5_3:1704116-1704135 None:intergenic 50.0%
! CTTGTCCAGCTTTAGCAGGA+GGG - chr5_3:1704237-1704256 None:intergenic 50.0%
! TCTTGTCCAGCTTTAGCAGG+AGG - chr5_3:1704238-1704257 None:intergenic 50.0%
GGTTATGGTATGGTTGGAGG+TGG + chr5_3:1704545-1704564 Msa0790880:CDS 50.0%
GGTATGGTTGGAGGTGGATA+TGG + chr5_3:1704551-1704570 Msa0790880:CDS 50.0%
AAAAATGAGGGTTGGGGCCT+AGG + chr5_3:1704668-1704687 Msa0790880:intron 50.0%
ATGTTCCCTCCCCTCATCAT+AGG + chr5_3:1704887-1704906 Msa0790880:intron 50.0%
TTCAGCCTATGATGAGGGGA+GGG - chr5_3:1704895-1704914 None:intergenic 50.0%
TTTCAGCCTATGATGAGGGG+AGG - chr5_3:1704896-1704915 None:intergenic 50.0%
CCCTCATCATAGGCTGAAAG+AGG + chr5_3:1704897-1704916 Msa0790880:intron 50.0%
AGCGAGAGAGCAAGAGAGAT+AGG - chr5_3:1705108-1705127 None:intergenic 50.0%
CTTGCTCTCTCGCTGATAAG+AGG + chr5_3:1705114-1705133 Msa0790880:intron 50.0%
ATGCTCCATCACCAGTATCC+CGG + chr5_3:1705399-1705418 Msa0790880:CDS 50.0%
! AGTAGTGGTGTCAGCTCAAG+TGG + chr5_3:1705431-1705450 Msa0790880:CDS 50.0%
ATCGGCCATGACCACGATTA+CGG - chr5_3:1705481-1705500 None:intergenic 50.0%
! CAGTGCTCTAAGCCTACAGA+TGG - chr5_3:1705720-1705739 None:intergenic 50.0%
CATCTGTAGGCTTAGAGCAC+TGG + chr5_3:1705718-1705737 Msa0790880:three_prime_UTR 50.0%
! TACGTTGGGCCTTATGGGTC+GGG - chr5_3:1699566-1699585 None:intergenic 55.0%
GGCCCAACGTAAAACCCATC+TGG + chr5_3:1699575-1699594 Msa0790880:five_prime_UTR 55.0%
TCGGCGGTGTATGTCCAGAT+GGG - chr5_3:1699592-1699611 None:intergenic 55.0%
CACAGAGGAAGAGAGGGGAA+AGG - chr5_3:1700759-1700778 None:intergenic 55.0%
GCCCGAAATTCAGAGTCACC+AGG + chr5_3:1701170-1701189 Msa0790880:CDS 55.0%
TCAGGTTCACTGTTTCCCCC+TGG - chr5_3:1701191-1701210 None:intergenic 55.0%
ACCCACAGATTCTGGTGAGC+AGG + chr5_3:1701214-1701233 Msa0790880:CDS 55.0%
GGTGGAGGAAGAAGTGGAAG+AGG + chr5_3:1701304-1701323 Msa0790880:CDS 55.0%
CTTCTTGCGCTTCCACCTCA+TGG + chr5_3:1701407-1701426 Msa0790880:CDS 55.0%
GCTTCCACCTCATGGTTCAG+AGG + chr5_3:1701415-1701434 Msa0790880:CDS 55.0%
ATCTGTGGGAGAAGTGGCAG+AGG + chr5_3:1701496-1701515 Msa0790880:CDS 55.0%
AATGACTCCAGGGCCAACCT+TGG - chr5_3:1701996-1702015 None:intergenic 55.0%
! GGTTGGCCCTGGAGTCATTT+CGG + chr5_3:1701997-1702016 Msa0790880:CDS 55.0%
GGAGGAAGCCATAAACCGCA+AGG - chr5_3:1702957-1702976 None:intergenic 55.0%
CGTGACCTGGTGCTTAGTAC+AGG + chr5_3:1704114-1704133 Msa0790880:intron 55.0%
!! GGAGGTGGATATGGTGCTGT+TGG + chr5_3:1704560-1704579 Msa0790880:CDS 55.0%
!! GGATATGGTGCTGTTGGTGC+AGG + chr5_3:1704566-1704585 Msa0790880:CDS 55.0%
!! GGTGCTGTTGGTGCAGGATA+TGG + chr5_3:1704572-1704591 Msa0790880:CDS 55.0%
GCAGCCACTGATGTATGGTC+CGG + chr5_3:1705148-1705167 Msa0790880:intron 55.0%
CAGCCACTGATGTATGGTCC+GGG + chr5_3:1705149-1705168 Msa0790880:intron 55.0%
GGCATCATTGTCATGCCAGC+AGG - chr5_3:1705182-1705201 None:intergenic 55.0%
TGTGACTGTAGGCAACAGCC+AGG + chr5_3:1705365-1705384 Msa0790880:intron 55.0%
ACCACTACTCCTACCATGCC+GGG - chr5_3:1705420-1705439 None:intergenic 55.0%
CACCACTACTCCTACCATGC+CGG - chr5_3:1705421-1705440 None:intergenic 55.0%
! CTTTGGGGGAGGTAACCAGT+AGG - chr5_3:1705528-1705547 None:intergenic 55.0%
!! AGAGCACTGGCGATGACTCA+CGG + chr5_3:1705731-1705750 Msa0790880:three_prime_UTR 55.0%
CTCGGCGGTGTATGTCCAGA+TGG - chr5_3:1699593-1699612 None:intergenic 60.0%
! GTTGTTGCCAAGGTTGGCCC+TGG + chr5_3:1701986-1702005 Msa0790880:CDS 60.0%
TGGCCCTGGAGTCATTTCGG+TGG + chr5_3:1702000-1702019 Msa0790880:CDS 60.0%
GCTCTCCCTCCTGCTAAAGC+TGG + chr5_3:1704229-1704248 Msa0790880:CDS 60.0%
CCAAGAGGAGGTGGATACGC+AGG - chr5_3:1704527-1704546 None:intergenic 60.0%
CCTGCGTATCCACCTCCTCT+TGG + chr5_3:1704524-1704543 Msa0790880:CDS 60.0%
!! GGTGCAGGATATGGTGCTGC+TGG + chr5_3:1704581-1704600 Msa0790880:CDS 60.0%
!! TGGTGCTGCTGGCTTTGCAC+CGG + chr5_3:1704592-1704611 Msa0790880:CDS 60.0%
GCTCCCGGACCATACATCAG+TGG - chr5_3:1705155-1705174 None:intergenic 60.0%
ATGCCAGCAGGAGTTGCTCC+CGG - chr5_3:1705170-1705189 None:intergenic 60.0%
CCATGCCGGGATACTGGTGA+TGG - chr5_3:1705407-1705426 None:intergenic 60.0%
CCATCACCAGTATCCCGGCA+TGG + chr5_3:1705404-1705423 Msa0790880:CDS 60.0%
CACCAGTATCCCGGCATGGT+AGG + chr5_3:1705408-1705427 Msa0790880:CDS 60.0%
CTCCTACCATGCCGGGATAC+TGG - chr5_3:1705413-1705432 None:intergenic 60.0%
TCCCGGCATGGTAGGAGTAG+TGG + chr5_3:1705416-1705435 Msa0790880:CDS 60.0%
AAAGGCCCGCCCGACCCATA+AGG + chr5_3:1699554-1699573 Msa0790880:five_prime_UTR 65.0%
! TTGGGCCTTATGGGTCGGGC+GGG - chr5_3:1699562-1699581 None:intergenic 65.0%
! GTTGGGCCTTATGGGTCGGG+CGG - chr5_3:1699563-1699582 None:intergenic 65.0%
TAGTGAGCTGGGCTGACCCG+AGG + chr5_3:1702339-1702358 Msa0790880:CDS 65.0%
! GCTGAGTTGAGAGGGGGGGT+CGG + chr5_3:1703164-1703183 Msa0790880:intron 65.0%
GGTCCGGGAGCAACTCCTGC+TGG + chr5_3:1705164-1705183 Msa0790880:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1699497 1705911 1699497 ID=Msa0790880;Name=Msa0790880
chr5_3 mRNA 1699497 1705911 1699497 ID=Msa0790880-mRNA-1;Parent=Msa0790880;Name=Msa0790880-mRNA-1;_AED=0.11;_eAED=0.11;_QI=580|1|1|1|0.87|0.77|9|397|469
chr5_3 exon 1699497 1699738 1699497 ID=Msa0790880-mRNA-1:exon:655;Parent=Msa0790880-mRNA-1
chr5_3 exon 1700802 1701517 1700802 ID=Msa0790880-mRNA-1:exon:656;Parent=Msa0790880-mRNA-1
chr5_3 exon 1701592 1701699 1701592 ID=Msa0790880-mRNA-1:exon:657;Parent=Msa0790880-mRNA-1
chr5_3 exon 1701893 1702033 1701893 ID=Msa0790880-mRNA-1:exon:658;Parent=Msa0790880-mRNA-1
chr5_3 exon 1702215 1702388 1702215 ID=Msa0790880-mRNA-1:exon:659;Parent=Msa0790880-mRNA-1
chr5_3 exon 1704136 1704343 1704136 ID=Msa0790880-mRNA-1:exon:660;Parent=Msa0790880-mRNA-1
chr5_3 exon 1704438 1704613 1704438 ID=Msa0790880-mRNA-1:exon:661;Parent=Msa0790880-mRNA-1
chr5_3 exon 1705152 1705237 1705152 ID=Msa0790880-mRNA-1:exon:662;Parent=Msa0790880-mRNA-1
chr5_3 exon 1705376 1705911 1705376 ID=Msa0790880-mRNA-1:exon:663;Parent=Msa0790880-mRNA-1
chr5_3 five_prime_UTR 1699497 1699738 1699497 ID=Msa0790880-mRNA-1:five_prime_utr;Parent=Msa0790880-mRNA-1
chr5_3 five_prime_UTR 1700802 1701139 1700802 ID=Msa0790880-mRNA-1:five_prime_utr;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1701140 1701517 1701140 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1701592 1701699 1701592 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1701893 1702033 1701893 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1702215 1702388 1702215 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1704136 1704343 1704136 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1704438 1704613 1704438 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1705152 1705237 1705152 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 CDS 1705376 1705514 1705376 ID=Msa0790880-mRNA-1:cds;Parent=Msa0790880-mRNA-1
chr5_3 three_prime_UTR 1705515 1705911 1705515 ID=Msa0790880-mRNA-1:three_prime_utr;Parent=Msa0790880-mRNA-1
Gene Sequence

>Msa0790880

ATGCCTGGGACAAGACAAAAAGATGCAACTGCCCGAAATTCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAACCCACAGATTCTGGTGAGCAGGTAGATCTTGATGGGGACAATGATCAAGAGGAATCAAGCGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAAGAAGTAGAGGAAGAGAGTAAGCCCTTAGATGAAGAAGATGAGGCTGACAAAAAGAAACACGCTGAGCTTCTTGCGCTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCACGAAACTTCTGAAAAAGATTTAAGGGTCTTTTGTCAATCTGTGGGAGAAGTGGCAGAGGTAAGGGTTATGAAGGGGAAAGAAGCCAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTAGCATCTAAGGCTCTCGAGGAGTTGAACAACTCTGAATTCAAGGGAAGAAAAATAAAGTGCTCACCATCTCAAGTTAAGCATCGGTTATTCATTGGTAATGTTCCTAAAGAGTGGACTGTAGAAGATATGAAGAAGGTTGTTGCCAAGGTTGGCCCTGGAGTCATTTCGGTGGAACTGTTGAAGGATCCACAGAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCAAACTTTAAACTTGACAATAACGATGCAATAGTGAGCTGGGCTGACCCGAGGAATTCTGAATCATCATCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAAACATAACTCAGAATCGTCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGTCAAACTTTGGAATGCTCACTTGCTAAGCCACAAGCAGATCAGAAGTCATCTGGTGCATCAAATTCATTCAACTCTGCTGTACTTCCTGCGTATCCACCTCCTCTTGGTTATGGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGACAATGATGCCAATGCTTTTACCAGATGGAAGGATTGCATATGTATTGCAACAGCCAGGTTTTCAACAACATGCTCCATCACCAGTATCCCGGCATGGTAGGAGTAGTGGTGTCAGCTCAAGTGGTGAAAAACGCAGTAACGATAATAACCGTAATCGTGGTCATGGCCGATATAATCCTTACTAA
Protein sequence

>Msa0790880

MPGTRQKDATARNSESPGGNSEPEKPTDSGEQVDLDGDNDQEESSEEEVEYEEVEVEEEVEEEEEEEEVEEESKPLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALEELNNSEFKGRKIKCSPSQVKHRLFIGNVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPGFQQHAPSPVSRHGRSSGVSSSGEKRSNDNNRNRGHGRYNPY*