Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171940 | XP_003590940.1 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171940 | sp|Q7SXW4|EMC3_DANRE | 43.373 | 249 | 131 | 4 | 1 | 244 | 1 | 244 | 7.21e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171940 | G7I684 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0171940 | 0.810568 | 1.080229e-50 | -8.615850e-47 |
| Msa0007850 | Msa0171940 | 0.819679 | 1.023531e-52 | -8.615850e-47 |
| Msa0008090 | Msa0171940 | 0.805459 | 1.321260e-49 | -8.615850e-47 |
| Msa0009300 | Msa0171940 | 0.800893 | 1.163973e-48 | -8.615850e-47 |
| Msa0029260 | Msa0171940 | 0.830711 | 2.517429e-55 | -8.615850e-47 |
| Msa0033880 | Msa0171940 | 0.859748 | 3.336677e-63 | -8.615850e-47 |
| Msa0043860 | Msa0171940 | 0.814330 | 1.627944e-51 | -8.615850e-47 |
| Msa0048180 | Msa0171940 | 0.800521 | 1.386220e-48 | -8.615850e-47 |
| Msa0055100 | Msa0171940 | 0.816001 | 6.925259e-52 | -8.615850e-47 |
| Msa0061970 | Msa0171940 | 0.818940 | 1.507467e-52 | -8.615850e-47 |
| Msa0068020 | Msa0171940 | 0.841431 | 4.773137e-58 | -8.615850e-47 |
| Msa0076780 | Msa0171940 | 0.822218 | 2.664655e-53 | -8.615850e-47 |
| Msa0077010 | Msa0171940 | 0.851793 | 7.039058e-61 | -8.615850e-47 |
| Msa0093010 | Msa0171940 | 0.814622 | 1.402908e-51 | -8.615850e-47 |
| Msa0097600 | Msa0171940 | 0.810915 | 9.089133e-51 | -8.615850e-47 |
| Msa0101180 | Msa0171940 | 0.826191 | 3.105882e-54 | -8.615850e-47 |
| Msa0111330 | Msa0171940 | 0.819314 | 1.239667e-52 | -8.615850e-47 |
| Msa0113240 | Msa0171940 | 0.850048 | 2.184470e-60 | -8.615850e-47 |
| Msa0115370 | Msa0171940 | 0.822976 | 1.775762e-53 | -8.615850e-47 |
| Msa0126770 | Msa0171940 | 0.836004 | 1.206570e-56 | -8.615850e-47 |
| Msa0126840 | Msa0171940 | 0.978124 | 3.565017e-145 | -8.615850e-47 |
| Msa0126880 | Msa0171940 | 0.827646 | 1.394708e-54 | -8.615850e-47 |
| Msa0127040 | Msa0171940 | 0.845096 | 5.026483e-59 | -8.615850e-47 |
| Msa0127850 | Msa0171940 | 0.851180 | 1.049657e-60 | -8.615850e-47 |
| Msa0138160 | Msa0171940 | 0.807720 | 4.403812e-50 | -8.615850e-47 |
| Msa0142110 | Msa0171940 | 0.827650 | 1.391797e-54 | -8.615850e-47 |
| Msa0144420 | Msa0171940 | 0.820934 | 5.274567e-53 | -8.615850e-47 |
| Msa0144430 | Msa0171940 | 0.804497 | 2.099824e-49 | -8.615850e-47 |
| Msa0165950 | Msa0171940 | 0.811433 | 7.018087e-51 | -8.615850e-47 |
| Msa0166750 | Msa0171940 | 0.848220 | 7.040161e-60 | -8.615850e-47 |
| Msa0167480 | Msa0171940 | 0.868989 | 4.332468e-66 | -8.615850e-47 |
| Msa0169300 | Msa0171940 | 0.828952 | 6.753279e-55 | -8.615850e-47 |
| Msa0171850 | Msa0171940 | 0.829932 | 3.903502e-55 | -8.615850e-47 |
| Msa0171940 | Msa0174000 | 0.868685 | 5.432574e-66 | -8.615850e-47 |
| Msa0171940 | Msa0199690 | 0.809560 | 1.781162e-50 | -8.615850e-47 |
| Msa0171940 | Msa0221030 | 0.809313 | 2.012513e-50 | -8.615850e-47 |
| Msa0171940 | Msa0223170 | 0.806272 | 8.917726e-50 | -8.615850e-47 |
| Msa0171940 | Msa0226330 | 0.807421 | 5.096376e-50 | -8.615850e-47 |
| Msa0171940 | Msa0226460 | 0.807742 | 4.355754e-50 | -8.615850e-47 |
| Msa0171940 | Msa0231100 | 0.822238 | 2.636488e-53 | -8.615850e-47 |
| Msa0171940 | Msa0232550 | 0.810842 | 9.426165e-51 | -8.615850e-47 |
| Msa0171940 | Msa0241830 | 0.800243 | 1.579484e-48 | -8.615850e-47 |
| Msa0171940 | Msa0244980 | 0.813026 | 3.152122e-51 | -8.615850e-47 |
| Msa0171940 | Msa0245430 | 0.822321 | 2.521936e-53 | -8.615850e-47 |
| Msa0171940 | Msa0245580 | 0.834714 | 2.554926e-56 | -8.615850e-47 |
| Msa0171940 | Msa0262480 | 0.835789 | 1.367226e-56 | -8.615850e-47 |
| Msa0171940 | Msa0269470 | 0.823160 | 1.608781e-53 | -8.615850e-47 |
| Msa0171940 | Msa0275360 | 0.811214 | 7.830885e-51 | -8.615850e-47 |
| Msa0171940 | Msa0280430 | 0.820293 | 7.404334e-53 | -8.615850e-47 |
| Msa0171940 | Msa0283420 | 0.801798 | 7.596290e-49 | -8.615850e-47 |
| Msa0171940 | Msa0291520 | 0.833585 | 4.899810e-56 | -8.615850e-47 |
| Msa0171940 | Msa0296250 | 0.836364 | 9.773380e-57 | -8.615850e-47 |
| Msa0171940 | Msa0296920 | 0.859222 | 4.803023e-63 | -8.615850e-47 |
| Msa0171940 | Msa0300350 | 0.844209 | 8.710970e-59 | -8.615850e-47 |
| Msa0171940 | Msa0304590 | 0.818090 | 2.349550e-52 | -8.615850e-47 |
| Msa0171940 | Msa0304660 | 0.834738 | 2.519755e-56 | -8.615850e-47 |
| Msa0171940 | Msa0322090 | 0.812135 | 4.936332e-51 | -8.615850e-47 |
| Msa0171940 | Msa0331700 | 0.832556 | 8.834923e-56 | -8.615850e-47 |
| Msa0171940 | Msa0332640 | 0.805017 | 1.635164e-49 | -8.615850e-47 |
| Msa0171940 | Msa0358770 | 0.802057 | 6.718894e-49 | -8.615850e-47 |
| Msa0171940 | Msa0376690 | 0.817074 | 3.981931e-52 | -8.615850e-47 |
| Msa0171940 | Msa0383130 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
| Msa0171940 | Msa0384880 | 0.815442 | 9.227052e-52 | -8.615850e-47 |
| Msa0171940 | Msa0423750 | 0.806206 | 9.205528e-50 | -8.615850e-47 |
| Msa0171940 | Msa0436200 | 0.812473 | 4.165176e-51 | -8.615850e-47 |
| Msa0171940 | Msa0443390 | 0.858593 | 7.405120e-63 | -8.615850e-47 |
| Msa0171940 | Msa0458060 | 0.826893 | 2.113055e-54 | -8.615850e-47 |
| Msa0171940 | Msa0471590 | 0.811175 | 7.985555e-51 | -8.615850e-47 |
| Msa0171940 | Msa0478580 | 0.806212 | 9.179134e-50 | -8.615850e-47 |
| Msa0171940 | Msa0479330 | 0.817721 | 2.846646e-52 | -8.615850e-47 |
| Msa0171940 | Msa0511490 | 0.814452 | 1.529787e-51 | -8.615850e-47 |
| Msa0171940 | Msa0511770 | 0.806516 | 7.921267e-50 | -8.615850e-47 |
| Msa0171940 | Msa0523810 | 0.813535 | 2.437059e-51 | -8.615850e-47 |
| Msa0171940 | Msa0528060 | 0.805906 | 1.064433e-49 | -8.615850e-47 |
| Msa0171940 | Msa0534750 | 0.817638 | 2.972228e-52 | -8.615850e-47 |
| Msa0171940 | Msa0547990 | 0.807830 | 4.173891e-50 | -8.615850e-47 |
| Msa0171940 | Msa0550540 | 0.846274 | 2.406764e-59 | -8.615850e-47 |
| Msa0171940 | Msa0550570 | 0.848261 | 6.860766e-60 | -8.615850e-47 |
| Msa0171940 | Msa0561430 | 0.816955 | 4.235712e-52 | -8.615850e-47 |
| Msa0171940 | Msa0581110 | 0.824443 | 8.049545e-54 | -8.615850e-47 |
| Msa0171940 | Msa0581130 | 0.831949 | 1.249087e-55 | -8.615850e-47 |
| Msa0171940 | Msa0593700 | 0.832954 | 7.036955e-56 | -8.615850e-47 |
| Msa0171940 | Msa0603570 | 0.818768 | 1.649864e-52 | -8.615850e-47 |
| Msa0171940 | Msa0609000 | 0.830580 | 2.710386e-55 | -8.615850e-47 |
| Msa0171940 | Msa0610390 | 0.825931 | 3.580876e-54 | -8.615850e-47 |
| Msa0171940 | Msa0615580 | 0.839077 | 1.966231e-57 | -8.615850e-47 |
| Msa0171940 | Msa0618930 | 0.835838 | 1.328880e-56 | -8.615850e-47 |
| Msa0171940 | Msa0619860 | 0.809539 | 1.800349e-50 | -8.615850e-47 |
| Msa0171940 | Msa0631350 | 0.802033 | 6.796240e-49 | -8.615850e-47 |
| Msa0171940 | Msa0633570 | 0.834360 | 3.135440e-56 | -8.615850e-47 |
| Msa0171940 | Msa0642970 | 0.800013 | 1.758443e-48 | -8.615850e-47 |
| Msa0171940 | Msa0650920 | 0.807568 | 4.744467e-50 | -8.615850e-47 |
| Msa0171940 | Msa0654870 | 0.812365 | 4.398243e-51 | -8.615850e-47 |
| Msa0171940 | Msa0656810 | 0.806207 | 9.199908e-50 | -8.615850e-47 |
| Msa0171940 | Msa0659990 | 0.800670 | 1.292797e-48 | -8.615850e-47 |
| Msa0171940 | Msa0662630 | 0.830891 | 2.274243e-55 | -8.615850e-47 |
| Msa0171940 | Msa0666230 | 0.845351 | 4.286733e-59 | -8.615850e-47 |
| Msa0171940 | Msa0669720 | 0.823425 | 1.395052e-53 | -8.615850e-47 |
| Msa0171940 | Msa0669760 | 0.832959 | 7.017868e-56 | -8.615850e-47 |
| Msa0171940 | Msa0692940 | 0.811326 | 7.404863e-51 | -8.615850e-47 |
| Msa0171940 | Msa0693210 | 0.804341 | 2.263246e-49 | -8.615850e-47 |
| Msa0171940 | Msa0699190 | 0.822604 | 2.167776e-53 | -8.615850e-47 |
| Msa0171940 | Msa0719420 | 0.816797 | 4.594766e-52 | -8.615850e-47 |
| Msa0171940 | Msa0720030 | 0.810364 | 1.195646e-50 | -8.615850e-47 |
| Msa0171940 | Msa0729200 | 0.814445 | 1.534772e-51 | -8.615850e-47 |
| Msa0171940 | Msa0750920 | 0.803659 | 3.136148e-49 | -8.615850e-47 |
| Msa0171940 | Msa0751010 | 0.811250 | 7.689795e-51 | -8.615850e-47 |
| Msa0171940 | Msa0769590 | 0.821718 | 3.479507e-53 | -8.615850e-47 |
| Msa0171940 | Msa0785130 | 0.802430 | 5.630761e-49 | -8.615850e-47 |
| Msa0171940 | Msa0789680 | 0.813816 | 2.113534e-51 | -8.615850e-47 |
| Msa0171940 | Msa0805500 | 0.804499 | 2.097665e-49 | -8.615850e-47 |
| Msa0171940 | Msa0806880 | 0.833397 | 5.461549e-56 | -8.615850e-47 |
| Msa0171940 | Msa0838370 | 0.813138 | 2.978633e-51 | -8.615850e-47 |
| Msa0171940 | Msa0839200 | 0.830589 | 2.697382e-55 | -8.615850e-47 |
| Msa0171940 | Msa0858440 | 0.829536 | 4.872121e-55 | -8.615850e-47 |
| Msa0171940 | Msa0913240 | 0.890960 | 6.138832e-74 | -8.615850e-47 |
| Msa0171940 | Msa0921870 | 0.806073 | 9.818002e-50 | -8.615850e-47 |
| Msa0171940 | Msa0943170 | 0.817345 | 3.460942e-52 | -8.615850e-47 |
| Msa0171940 | Msa0943270 | 0.804551 | 2.045886e-49 | -8.615850e-47 |
| Msa0171940 | Msa0960830 | 0.834687 | 2.594364e-56 | -8.615850e-47 |
| Msa0171940 | Msa0963020 | 0.840584 | 7.963647e-58 | -8.615850e-47 |
| Msa0171940 | Msa1019240 | 0.823801 | 1.139165e-53 | -8.615850e-47 |
| Msa0171940 | Msa1019260 | 0.816350 | 5.787210e-52 | -8.615850e-47 |
| Msa0171940 | Msa1025940 | 0.830827 | 2.358185e-55 | -8.615850e-47 |
| Msa0171940 | Msa1027250 | 0.804017 | 2.643009e-49 | -8.615850e-47 |
| Msa0171940 | Msa1029970 | 0.815957 | 7.083952e-52 | -8.615850e-47 |
| Msa0171940 | Msa1070390 | 0.814681 | 1.361201e-51 | -8.615850e-47 |
| Msa0171940 | Msa1072710 | 0.820168 | 7.907802e-53 | -8.615850e-47 |
| Msa0171940 | Msa1083880 | 0.858321 | 8.927793e-63 | -8.615850e-47 |
| Msa0171940 | Msa1104210 | 0.825671 | 4.127906e-54 | -8.615850e-47 |
| Msa0171940 | Msa1120810 | 0.844398 | 7.750158e-59 | -8.615850e-47 |
| Msa0171940 | Msa1122820 | 0.825330 | 4.972493e-54 | -8.615850e-47 |
| Msa0171940 | Msa1126830 | 0.828723 | 7.673375e-55 | -8.615850e-47 |
| Msa0171940 | Msa1126850 | 0.835687 | 1.451122e-56 | -8.615850e-47 |
| Msa0171940 | Msa1126920 | 0.811903 | 5.547394e-51 | -8.615850e-47 |
| Msa0171940 | Msa1131170 | 0.808483 | 3.029048e-50 | -8.615850e-47 |
| Msa0171940 | Msa1131560 | 0.817631 | 2.983913e-52 | -8.615850e-47 |
| Msa0171940 | Msa1138870 | 0.800455 | 1.429470e-48 | -8.615850e-47 |
| Msa0171940 | Msa1156870 | 0.801803 | 7.578221e-49 | -8.615850e-47 |
| Msa0171940 | Msa1165780 | 0.871309 | 7.541072e-67 | -8.615850e-47 |
| Msa0171940 | Msa1165960 | 0.834299 | 3.247327e-56 | -8.615850e-47 |
| Msa0171940 | Msa1166870 | 0.851876 | 6.667904e-61 | -8.615850e-47 |
| Msa0171940 | Msa1176980 | 0.815961 | 7.070210e-52 | -8.615850e-47 |
| Msa0171940 | Msa1179950 | 0.832683 | 8.217469e-56 | -8.615850e-47 |
| Msa0171940 | Msa1179980 | 0.855180 | 7.501009e-62 | -8.615850e-47 |
| Msa0171940 | Msa1195300 | 0.816185 | 6.300316e-52 | -8.615850e-47 |
| Msa0171940 | Msa1201830 | 0.821331 | 4.274092e-53 | -8.615850e-47 |
| Msa0171940 | Msa1202580 | 0.846794 | 1.736407e-59 | -8.615850e-47 |
| Msa0171940 | Msa1205850 | 0.808011 | 3.819118e-50 | -8.615850e-47 |
| Msa0171940 | Msa1208020 | 0.817380 | 3.397800e-52 | -8.615850e-47 |
| Msa0171940 | Msa1227690 | 0.839795 | 1.279914e-57 | -8.615850e-47 |
| Msa0171940 | Msa1270620 | 0.852276 | 5.134383e-61 | -8.615850e-47 |
| Msa0171940 | Msa1270690 | 0.853476 | 2.330250e-61 | -8.615850e-47 |
| Msa0171940 | Msa1276970 | 0.803105 | 4.085113e-49 | -8.615850e-47 |
| Msa0171940 | Msa1278900 | 0.803403 | 3.545448e-49 | -8.615850e-47 |
| Msa0171940 | Msa1294840 | 0.817180 | 3.769538e-52 | -8.615850e-47 |
| Msa0171940 | Msa1306990 | 0.828980 | 6.649725e-55 | -8.615850e-47 |
| Msa0171940 | Msa1331250 | 0.829820 | 4.154968e-55 | -8.615850e-47 |
| Msa0171940 | Msa1331710 | 0.830949 | 2.201160e-55 | -8.615850e-47 |
| Msa0171940 | Msa1349570 | 0.823196 | 1.577510e-53 | -8.615850e-47 |
| Msa0171940 | Msa1351540 | 0.839338 | 1.682519e-57 | -8.615850e-47 |
| Msa0171940 | Msa1363860 | 0.824993 | 5.971088e-54 | -8.615850e-47 |
| Msa0171940 | Msa1369190 | 0.846953 | 1.570490e-59 | -8.615850e-47 |
| Msa0171940 | Msa1397940 | 0.816510 | 5.327219e-52 | -8.615850e-47 |
| Msa0171940 | Msa1413500 | 0.829645 | 4.585403e-55 | -8.615850e-47 |
| Msa0171940 | Msa1426370 | 0.838647 | 2.539463e-57 | -8.615850e-47 |
| Msa0171940 | Msa1427160 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa0171940 | Msa1447890 | 0.821854 | 3.236285e-53 | -8.615850e-47 |
| Msa0171940 | Msa1450280 | 0.805417 | 1.348436e-49 | -8.615850e-47 |
| Msa0171940 | Msa1459960 | 0.803267 | 3.782738e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171940 | MtrunA17_Chr1g0190101 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171940 | AT4G12590.1 | 83.333 | 246 | 40 | 1 | 1 | 246 | 1 | 245 | 4.30e-154 | 428 |
Find 79 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCATGATGCTCGAAATT+TGG | 0.208439 | 1_4:-56798217 | None:intergenic |
| TTCTCCAACCTTCTTTCTTA+TGG | 0.217168 | 1_4:-56798492 | None:intergenic |
| TCTGTTGTTATGGTCCTTAT+TGG | 0.248259 | 1_4:+56794191 | Msa0171940:CDS |
| AATCCCTTTATCTGTTGTTA+TGG | 0.271631 | 1_4:+56794181 | Msa0171940:CDS |
| CTCAATCTGTTTGGCTTAAG+AGG | 0.312313 | 1_4:+56797421 | Msa0171940:CDS |
| TTCTTAAATAACATCAGTTC+TGG | 0.312638 | 1_4:-56798460 | None:intergenic |
| TTCAGGTCCATGTTACAAAA+TGG | 0.332192 | 1_4:+56797271 | Msa0171940:CDS |
| TTCCATTGACACAAAGGTTC+AGG | 0.334198 | 1_4:+56797254 | Msa0171940:CDS |
| ACCTTCTTTCTTATGGCTAC+TGG | 0.354373 | 1_4:-56798485 | None:intergenic |
| ATTCATATTTGTACCTTTGA+AGG | 0.358366 | 1_4:-56797670 | None:intergenic |
| AGGACCATAACAACAGATAA+AGG | 0.362674 | 1_4:-56794185 | None:intergenic |
| TAGAATAATGGCGGAAGATC+TGG | 0.378579 | 1_4:+56794127 | Msa0171940:exon |
| GAAGTTTAATTGCTTACCTT+AGG | 0.382278 | 1_4:+56798288 | Msa0171940:three_prime_UTR |
| TGGATACTGCAATCAGAGAT+TGG | 0.384123 | 1_4:+56794153 | Msa0171940:CDS |
| CGGGCACGAAAAGCCTTAGA+AGG | 0.386182 | 1_4:-56794424 | None:intergenic |
| GGATTCGTGGCTTGGCCCTT+TGG | 0.388165 | 1_4:-56794765 | None:intergenic |
| CTATCGAAAGACGAGGTTGC+CGG | 0.390954 | 1_4:+56793870 | Msa0171940:five_prime_UTR |
| AATGGCGGAAGATCTGGTTT+TGG | 0.395876 | 1_4:+56794133 | Msa0171940:exon |
| AGGATTGTTTAGTCTCATCT+TGG | 0.396848 | 1_4:+56797441 | Msa0171940:CDS |
| GTGCTTGTGGATTCGTGGCT+TGG | 0.403806 | 1_4:-56794773 | None:intergenic |
| AGGTACTTTCTCAATCTGTT+TGG | 0.404129 | 1_4:+56797412 | Msa0171940:intron |
| GGATTGTTTAGTCTCATCTT+GGG | 0.407530 | 1_4:+56797442 | Msa0171940:CDS |
| GGTTGGACCTTTGCCATCCT+TGG | 0.413923 | 1_4:+56798336 | Msa0171940:three_prime_UTR |
| TACACGGTTCAATATTTCAT+AGG | 0.414844 | 1_4:-56798519 | None:intergenic |
| TTGACATAACCCAACATGAC+TGG | 0.426408 | 1_4:+56798188 | Msa0171940:CDS |
| ATGCAAATGGGTGGTGGATT+CGG | 0.429326 | 1_4:+56797640 | Msa0171940:CDS |
| AAGTTTAATTGCTTACCTTA+GGG | 0.429817 | 1_4:+56798289 | Msa0171940:three_prime_UTR |
| TATGACGAAGCACACCAATA+AGG | 0.439131 | 1_4:-56794205 | None:intergenic |
| GGATACTGCAATCAGAGATT+GGG | 0.444442 | 1_4:+56794154 | Msa0171940:CDS |
| AACCTTTGTGTCAATGGAAA+AGG | 0.444622 | 1_4:-56797250 | None:intergenic |
| ATCATATCCATGGCCATGTT+CGG | 0.446386 | 1_4:-56794810 | None:intergenic |
| TTGAGAAGAACGCAGAAGCT+TGG | 0.453820 | 1_4:-56794234 | None:intergenic |
| TCTTTCAATGATTATACCTC+AGG | 0.457257 | 1_4:+56794842 | Msa0171940:CDS |
| TTAAACTTCCAATGTCATAT+AGG | 0.460285 | 1_4:-56798274 | None:intergenic |
| TGGCAAAGCCCAGTCATGTT+GGG | 0.461277 | 1_4:-56798197 | None:intergenic |
| GACCTGAACCTTTGTGTCAA+TGG | 0.461327 | 1_4:-56797256 | None:intergenic |
| GGACCATAACAACAGATAAA+GGG | 0.462038 | 1_4:-56794184 | None:intergenic |
| ATTACAATAATAAAGCTTGC+GGG | 0.463442 | 1_4:-56794443 | None:intergenic |
| TTACATTCTATTGTTGCGGT+TGG | 0.473394 | 1_4:+56798319 | Msa0171940:three_prime_UTR |
| GCTACGTCAGCAGTCGCTCC+TGG | 0.476096 | 1_4:+56797320 | Msa0171940:CDS |
| TCAGAGAACATTTGTGCTTG+TGG | 0.484350 | 1_4:-56794786 | None:intergenic |
| CATTTGTGCTTGTGGATTCG+TGG | 0.484951 | 1_4:-56794778 | None:intergenic |
| CAAGCTTTATTATTGTAATG+AGG | 0.490585 | 1_4:+56794447 | Msa0171940:CDS |
| TGTCAATGGAAAAGGTATCT+TGG | 0.490898 | 1_4:-56797242 | None:intergenic |
| AGAGAAACAAGATCGAGAAC+TGG | 0.497129 | 1_4:-56793913 | None:intergenic |
| TACACAAAGAATGATGCAAA+TGG | 0.499016 | 1_4:+56797627 | Msa0171940:CDS |
| GGAGGGAGATGTGTAGTGTA+GGG | 0.506217 | 1_4:-56798603 | None:intergenic |
| AGGAGGGAGATGTGTAGTGT+AGG | 0.513520 | 1_4:-56798604 | None:intergenic |
| GAATGTAAGTGTTTCCCCTA+AGG | 0.519333 | 1_4:-56798304 | None:intergenic |
| TGGTCTGTTATTCGTTCCAA+AGG | 0.520176 | 1_4:+56794749 | Msa0171940:CDS |
| GCCAGTAGCCATAAGAAAGA+AGG | 0.529286 | 1_4:+56798484 | Msa0171940:three_prime_UTR |
| ACACTTACATTCTATTGTTG+CGG | 0.533115 | 1_4:+56798315 | Msa0171940:three_prime_UTR |
| TGACATAACCCAACATGACT+GGG | 0.533631 | 1_4:+56798189 | Msa0171940:CDS |
| ATGTGTAGTGTAGGGCTTCG+CGG | 0.546141 | 1_4:-56798595 | None:intergenic |
| GATCGATTGTGTCACACAGC+CGG | 0.554382 | 1_4:-56793889 | None:intergenic |
| CTCTGATCCGAACATGGCCA+TGG | 0.554603 | 1_4:+56794803 | Msa0171940:CDS |
| TTGGCAAAGCCCAGTCATGT+TGG | 0.556486 | 1_4:-56798198 | None:intergenic |
| GATATCAAAATTGTCAGAGA+AGG | 0.558054 | 1_4:+56794263 | Msa0171940:CDS |
| ATTCGGATTTGATCCTTCAA+AGG | 0.558196 | 1_4:+56797657 | Msa0171940:CDS |
| GGTCTGTTATTCGTTCCAAA+GGG | 0.570620 | 1_4:+56794750 | Msa0171940:CDS |
| GATTGTTTAGTCTCATCTTG+GGG | 0.571481 | 1_4:+56797443 | Msa0171940:CDS |
| AGCTCGGAATTTACGTGCTG+CGG | 0.574470 | 1_4:+56794390 | Msa0171940:CDS |
| ACACAAAGAATGATGCAAAT+GGG | 0.575278 | 1_4:+56797628 | Msa0171940:CDS |
| CATTACAATAATAAAGCTTG+CGG | 0.576893 | 1_4:-56794444 | None:intergenic |
| AGAATGATGCAAATGGGTGG+TGG | 0.577037 | 1_4:+56797634 | Msa0171940:CDS |
| GGCAAGTTATGCTTAGAGCT+CGG | 0.581999 | 1_4:+56794374 | Msa0171940:intron |
| ATATCAAAATTGTCAGAGAA+GGG | 0.586701 | 1_4:+56794264 | Msa0171940:CDS |
| GAACAATACCTATATGACAT+TGG | 0.592687 | 1_4:+56798266 | Msa0171940:exon |
| GTAGCCATAAGAAAGAAGGT+TGG | 0.598364 | 1_4:+56798488 | Msa0171940:three_prime_UTR |
| AATGTTCTCTGATCCGAACA+TGG | 0.607119 | 1_4:+56794797 | Msa0171940:CDS |
| AGTTTAATTGCTTACCTTAG+GGG | 0.630701 | 1_4:+56798290 | Msa0171940:three_prime_UTR |
| CCGCGATGTAGAATCTGATG+AGG | 0.637912 | 1_4:-56793972 | None:intergenic |
| ATTGTTTAGTCTCATCTTGG+GGG | 0.651233 | 1_4:+56797444 | Msa0171940:CDS |
| AGCTAACATCAACTGTGCTG+AGG | 0.659434 | 1_4:-56797300 | None:intergenic |
| GGGCACGAAAAGCCTTAGAA+GGG | 0.660230 | 1_4:-56794423 | None:intergenic |
| AAAGTTTAAACACATATACA+CGG | 0.671547 | 1_4:-56798535 | None:intergenic |
| TGTTAAACTATCGAAAGACG+AGG | 0.674238 | 1_4:+56793863 | Msa0171940:five_prime_UTR |
| CAAAGAATGATGCAAATGGG+TGG | 0.748607 | 1_4:+56797631 | Msa0171940:CDS |
| CCTCATCAGATTCTACATCG+CGG | 0.750491 | 1_4:+56793972 | Msa0171940:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTTATGTTTCTTATT+TGG | + | chr1_4:56794508-56794527 | Msa0171940:intron | 10.0% |
| !!! | TAAATTTATGTTTCTTATTT+GGG | + | chr1_4:56794509-56794528 | Msa0171940:intron | 10.0% |
| !! | TATATACAAAAAATTAAAAC+TGG | - | chr1_4:56795170-56795189 | None:intergenic | 10.0% |
| !!! | TTGTGTATTATTTTAGATTT+GGG | - | chr1_4:56794044-56794063 | None:intergenic | 15.0% |
| !!! | ATTGTGTATTATTTTAGATT+TGG | - | chr1_4:56794045-56794064 | None:intergenic | 15.0% |
| !!! | ATATTTTTATGTAGTTTGTT+AGG | + | chr1_4:56794101-56794120 | Msa0171940:intron | 15.0% |
| !!! | TTTTTAATTTGATTATGTTG+TGG | + | chr1_4:56794341-56794360 | Msa0171940:intron | 15.0% |
| !!! | ATTCTTAGTTTTTTTTCTTA+TGG | + | chr1_4:56795460-56795479 | Msa0171940:intron | 15.0% |
| !!! | ATTTTGTAATTCTATATAGT+TGG | - | chr1_4:56795629-56795648 | None:intergenic | 15.0% |
| !!! | ATTTTTATTATGATTTGTTC+TGG | - | chr1_4:56795855-56795874 | None:intergenic | 15.0% |
| !! | GAACAAATCATAATAAAAAT+AGG | + | chr1_4:56795855-56795874 | Msa0171940:intron | 15.0% |
| !! | TAAGATTATAAACTAATTCT+AGG | + | chr1_4:56795908-56795927 | Msa0171940:intron | 15.0% |
| !!! | AAGTTTTTTTTTTTTAGCAA+AGG | + | chr1_4:56797846-56797865 | Msa0171940:intron | 15.0% |
| !!! | TTTTAAACCTTTTCTTATAA+AGG | - | chr1_4:56797935-56797954 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCAGTAAAACAAA+AGG | + | chr1_4:56793795-56793814 | Msa0171940:five_prime_UTR | 20.0% |
| !! | TGAAATTGAAATTAGAAACA+AGG | - | chr1_4:56794012-56794031 | None:intergenic | 20.0% |
| !!! | TTTGTTAGGTTTTAGAATAA+TGG | + | chr1_4:56794115-56794134 | Msa0171940:exon | 20.0% |
| !! | AATTAACAACTTATTGTTTG+AGG | + | chr1_4:56794563-56794582 | Msa0171940:intron | 20.0% |
| !!! | TGTTTGTCAATTTTTGTTAA+AGG | + | chr1_4:56794722-56794741 | Msa0171940:intron | 20.0% |
| !!! | CAATTTTTGTTAAAGGAAAA+TGG | + | chr1_4:56794729-56794748 | Msa0171940:intron | 20.0% |
| !!! | GTTATTATGTCATTAGATTT+TGG | + | chr1_4:56794890-56794909 | Msa0171940:intron | 20.0% |
| !!! | ATTTTTTGTATATATACGGT+TGG | + | chr1_4:56795176-56795195 | Msa0171940:intron | 20.0% |
| !! | GAAAAATCAGAGAATAAATT+AGG | + | chr1_4:56795686-56795705 | Msa0171940:intron | 20.0% |
| !!! | ATAATCTTAAAGTATCTCTT+AGG | - | chr1_4:56795897-56795916 | None:intergenic | 20.0% |
| !!! | AGATACTCTTTTCTTTTTTA+TGG | + | chr1_4:56795941-56795960 | Msa0171940:intron | 20.0% |
| !! | TAAAACTATAATTTCCAAGT+TGG | - | chr1_4:56797729-56797748 | None:intergenic | 20.0% |
| !!! | TTTTCTTAATCTTGTTTTCA+GGG | + | chr1_4:56798142-56798161 | Msa0171940:intron | 20.0% |
| !! | AAAGTTTAAACACATATACA+CGG | - | chr1_4:56798538-56798557 | None:intergenic | 20.0% |
| ! | ATATCAAAATTGTCAGAGAA+GGG | + | chr1_4:56794264-56794283 | Msa0171940:CDS | 25.0% |
| !!! | TTATGTTGTGGTTTTAATAC+AGG | + | chr1_4:56794353-56794372 | Msa0171940:intron | 25.0% |
| ! | ATTACAATAATAAAGCTTGC+GGG | - | chr1_4:56794446-56794465 | None:intergenic | 25.0% |
| ! | CATTACAATAATAAAGCTTG+CGG | - | chr1_4:56794447-56794466 | None:intergenic | 25.0% |
| !!! | CAAGCTTTATTATTGTAATG+AGG | + | chr1_4:56794447-56794466 | Msa0171940:CDS | 25.0% |
| !!! | AGAAAACCTTTAAAACTCAT+CGG | + | chr1_4:56794614-56794633 | Msa0171940:intron | 25.0% |
| !! | ATTTTTCTTCATCATATCCA+TGG | - | chr1_4:56794823-56794842 | None:intergenic | 25.0% |
| ! | TTAGTATGGCAATTCATAAT+TGG | - | chr1_4:56794948-56794967 | None:intergenic | 25.0% |
| ! | GTAAACAATACAAGTTAGTA+TGG | - | chr1_4:56794962-56794981 | None:intergenic | 25.0% |
| ! | TTGTATTGTTTACTCTTGTT+GGG | + | chr1_4:56794969-56794988 | Msa0171940:intron | 25.0% |
| ! | ATATCTTGACTTATTGTCTA+TGG | + | chr1_4:56795219-56795238 | Msa0171940:intron | 25.0% |
| ! | ATATCAACTAATCAAACAGA+CGG | + | chr1_4:56795275-56795294 | Msa0171940:intron | 25.0% |
| ! | AGAATGGGTGATAAAATAAA+AGG | + | chr1_4:56795561-56795580 | Msa0171940:intron | 25.0% |
| ! | GAATGGGTGATAAAATAAAA+GGG | + | chr1_4:56795562-56795581 | Msa0171940:intron | 25.0% |
| ! | AATGGGTGATAAAATAAAAG+GGG | + | chr1_4:56795563-56795582 | Msa0171940:intron | 25.0% |
| !!! | AATAAATTAGGTTGAAGTTG+TGG | + | chr1_4:56795698-56795717 | Msa0171940:intron | 25.0% |
| !!! | GTTGTGGTATTTTAGATAAA+AGG | + | chr1_4:56795714-56795733 | Msa0171940:intron | 25.0% |
| !!! | TGGTATTTTAGATAAAAGGA+GGG | + | chr1_4:56795718-56795737 | Msa0171940:intron | 25.0% |
| !!! | ATAAGGCTCAATTTTTAAGT+AGG | + | chr1_4:56796042-56796061 | Msa0171940:intron | 25.0% |
| ! | AAAGAGGAAAAATCTAGTAT+GGG | - | chr1_4:56796163-56796182 | None:intergenic | 25.0% |
| ! | ATGTATAACTTTACCAAACT+TGG | + | chr1_4:56796613-56796632 | Msa0171940:intron | 25.0% |
| !! | TTTACATAAGTCTTGTATAC+TGG | + | chr1_4:56796918-56796937 | Msa0171940:intron | 25.0% |
| ! | AAATTCTATTACTGAGTAAC+AGG | + | chr1_4:56796976-56796995 | Msa0171940:intron | 25.0% |
| ! | TTTCCATTATAACTGCAATT+TGG | + | chr1_4:56797549-56797568 | Msa0171940:intron | 25.0% |
| ! | TATCCAAATTGCAGTTATAA+TGG | - | chr1_4:56797555-56797574 | None:intergenic | 25.0% |
| ! | ATTCATATTTGTACCTTTGA+AGG | - | chr1_4:56797673-56797692 | None:intergenic | 25.0% |
| !!! | ATAATTTTGAAGATCCAACT+TGG | + | chr1_4:56797712-56797731 | Msa0171940:intron | 25.0% |
| !! | TAAACCTTTTCTTATAAAGG+TGG | - | chr1_4:56797932-56797951 | None:intergenic | 25.0% |
| ! | GGTTTAAAAAGAATAGTTCT+AGG | + | chr1_4:56797946-56797965 | Msa0171940:intron | 25.0% |
| !!! | CTTTTCTTAATCTTGTTTTC+AGG | + | chr1_4:56798141-56798160 | Msa0171940:intron | 25.0% |
| ! | TTAAACTTCCAATGTCATAT+AGG | - | chr1_4:56798277-56798296 | None:intergenic | 25.0% |
| ! | AAGTTTAATTGCTTACCTTA+GGG | + | chr1_4:56798289-56798308 | Msa0171940:three_prime_UTR | 25.0% |
| ! | TTCTTAAATAACATCAGTTC+TGG | - | chr1_4:56798463-56798482 | None:intergenic | 25.0% |
| !!! | GTTAGGTTTTAGAATAATGG+CGG | + | chr1_4:56794118-56794137 | Msa0171940:exon | 30.0% |
| AATCCCTTTATCTGTTGTTA+TGG | + | chr1_4:56794181-56794200 | Msa0171940:CDS | 30.0% | |
| !! | TCTCTGACAATTTTGATATC+AGG | - | chr1_4:56794263-56794282 | None:intergenic | 30.0% |
| GATATCAAAATTGTCAGAGA+AGG | + | chr1_4:56794263-56794282 | Msa0171940:CDS | 30.0% | |
| !! | GTGTATTCTAGTTTGATAGA+AGG | + | chr1_4:56794484-56794503 | Msa0171940:intron | 30.0% |
| TATTTGGGAGAACAATGTAA+TGG | + | chr1_4:56794524-56794543 | Msa0171940:intron | 30.0% | |
| !! | AATGTAATGGCTTTTGTTGT+GGG | + | chr1_4:56794537-56794556 | Msa0171940:intron | 30.0% |
| !! | TAACTTCCGATGAGTTTTAA+AGG | - | chr1_4:56794623-56794642 | None:intergenic | 30.0% |
| CATTTGTCTAACCAATTCAA+CGG | + | chr1_4:56794690-56794709 | Msa0171940:intron | 30.0% | |
| TCTTTCAATGATTATACCTC+AGG | + | chr1_4:56794842-56794861 | Msa0171940:CDS | 30.0% | |
| CTTGTATTGTTTACTCTTGT+TGG | + | chr1_4:56794968-56794987 | Msa0171940:intron | 30.0% | |
| GTAGTGTCATAATGTTAGAT+TGG | + | chr1_4:56795072-56795091 | Msa0171940:intron | 30.0% | |
| AGATATATACGTGCTTATTC+AGG | - | chr1_4:56795205-56795224 | None:intergenic | 30.0% | |
| ! | ATCAAACAGACGGTTTTTAT+TGG | + | chr1_4:56795285-56795304 | Msa0171940:intron | 30.0% |
| !! | CGGTTTTTATTGGTATTGAA+AGG | + | chr1_4:56795295-56795314 | Msa0171940:intron | 30.0% |
| ACATATGATAGAATACCTAG+TGG | + | chr1_4:56795318-56795337 | Msa0171940:intron | 30.0% | |
| CATATGATAGAATACCTAGT+GGG | + | chr1_4:56795319-56795338 | Msa0171940:intron | 30.0% | |
| CTATCAAAGAAATGTACCAA+GGG | + | chr1_4:56795356-56795375 | Msa0171940:intron | 30.0% | |
| TATCAAAGAAATGTACCAAG+GGG | + | chr1_4:56795357-56795376 | Msa0171940:intron | 30.0% | |
| AGATCATAGACAGTCATAAA+TGG | + | chr1_4:56795537-56795556 | Msa0171940:intron | 30.0% | |
| GATCATAGACAGTCATAAAT+GGG | + | chr1_4:56795538-56795557 | Msa0171940:intron | 30.0% | |
| !! | TTGGAAATTGTTTGCTTTTG+AGG | - | chr1_4:56795610-56795629 | None:intergenic | 30.0% |
| ! | TCTGATTTTTCCTATGAGTT+GGG | - | chr1_4:56795677-56795696 | None:intergenic | 30.0% |
| !! | GTGGTATTTTAGATAAAAGG+AGG | + | chr1_4:56795717-56795736 | Msa0171940:intron | 30.0% |
| TCCAAAACCTAAGTACTATA+AGG | + | chr1_4:56796025-56796044 | Msa0171940:intron | 30.0% | |
| ! | AATTGAGCCTTATAGTACTT+AGG | - | chr1_4:56796035-56796054 | None:intergenic | 30.0% |
| CTATCATAGATTACTGCTAT+AGG | + | chr1_4:56796069-56796088 | Msa0171940:intron | 30.0% | |
| AGTGAAACTTCAAAATCCAA+CGG | - | chr1_4:56796122-56796141 | None:intergenic | 30.0% | |
| GAAAGAGGAAAAATCTAGTA+TGG | - | chr1_4:56796164-56796183 | None:intergenic | 30.0% | |
| AAAAGAGACACAAATATTGC+TGG | - | chr1_4:56796460-56796479 | None:intergenic | 30.0% | |
| ATTTCATGGTCGTAAAAATG+GGG | - | chr1_4:56796579-56796598 | None:intergenic | 30.0% | |
| CATTTCATGGTCGTAAAAAT+GGG | - | chr1_4:56796580-56796599 | None:intergenic | 30.0% | |
| AGTTATACATATGTATGCTC+TGG | - | chr1_4:56796603-56796622 | None:intergenic | 30.0% | |
| ! | TGTTAAGTTTGTTCCAAGTT+TGG | - | chr1_4:56796629-56796648 | None:intergenic | 30.0% |
| GATTGAATAGGATTCAATCA+TGG | - | chr1_4:56796806-56796825 | None:intergenic | 30.0% | |
| CAGATTTCTTCATAGTATCA+GGG | - | chr1_4:56796828-56796847 | None:intergenic | 30.0% | |
| TCAGATTTCTTCATAGTATC+AGG | - | chr1_4:56796829-56796848 | None:intergenic | 30.0% | |
| !!! | AAGTTTTAGTTCAACAACTG+CGG | - | chr1_4:56797004-56797023 | None:intergenic | 30.0% |
| ! | GTCTATTCCATTTTGTAACA+TGG | - | chr1_4:56797281-56797300 | None:intergenic | 30.0% |
| CTATGAAAAAGAAGATTACC+AGG | - | chr1_4:56797341-56797360 | None:intergenic | 30.0% | |
| AATTGTCATGATTGCATTTC+AGG | + | chr1_4:56797392-56797411 | Msa0171940:intron | 30.0% | |
| CACTCGTTACAAATTATGAT+TGG | + | chr1_4:56797577-56797596 | Msa0171940:intron | 30.0% | |
| TACACAAAGAATGATGCAAA+TGG | + | chr1_4:56797627-56797646 | Msa0171940:CDS | 30.0% | |
| ACACAAAGAATGATGCAAAT+GGG | + | chr1_4:56797628-56797647 | Msa0171940:CDS | 30.0% | |
| TACAAAGAGAAGCAAAATGT+AGG | + | chr1_4:56797897-56797916 | Msa0171940:intron | 30.0% | |
| ! | TATTTGAAACTGCAAAGCTA+AGG | - | chr1_4:56798050-56798069 | None:intergenic | 30.0% |
| GAACAATACCTATATGACAT+TGG | + | chr1_4:56798266-56798285 | Msa0171940:exon | 30.0% | |
| GAAGTTTAATTGCTTACCTT+AGG | + | chr1_4:56798288-56798307 | Msa0171940:three_prime_UTR | 30.0% | |
| AGTTTAATTGCTTACCTTAG+GGG | + | chr1_4:56798290-56798309 | Msa0171940:three_prime_UTR | 30.0% | |
| ACACTTACATTCTATTGTTG+CGG | + | chr1_4:56798315-56798334 | Msa0171940:three_prime_UTR | 30.0% | |
| ! | ATCTTCAATATCTTTTGCCA+AGG | - | chr1_4:56798356-56798375 | None:intergenic | 30.0% |
| TACACGGTTCAATATTTCAT+AGG | - | chr1_4:56798522-56798541 | None:intergenic | 30.0% | |
| TGTTAAACTATCGAAAGACG+AGG | + | chr1_4:56793863-56793882 | Msa0171940:five_prime_UTR | 35.0% | |
| GGACCATAACAACAGATAAA+GGG | - | chr1_4:56794187-56794206 | None:intergenic | 35.0% | |
| AGGACCATAACAACAGATAA+AGG | - | chr1_4:56794188-56794207 | None:intergenic | 35.0% | |
| TCTGTTGTTATGGTCCTTAT+TGG | + | chr1_4:56794191-56794210 | Msa0171940:CDS | 35.0% | |
| ! | GGCTAATTTTATCCCTTCTA+AGG | + | chr1_4:56794411-56794430 | Msa0171940:CDS | 35.0% |
| ! | CAATGTAATGGCTTTTGTTG+TGG | + | chr1_4:56794536-56794555 | Msa0171940:intron | 35.0% |
| CAATTAGTTCACCGTTGAAT+TGG | - | chr1_4:56794704-56794723 | None:intergenic | 35.0% | |
| TAATCTATTCTGAACACCTG+AGG | - | chr1_4:56794861-56794880 | None:intergenic | 35.0% | |
| !! | TGGGTGAACTTTTTCTTTTC+TGG | + | chr1_4:56795010-56795029 | Msa0171940:CDS | 35.0% |
| ! | TTCTTTTCTGGATTTGTAGC+AGG | + | chr1_4:56795022-56795041 | Msa0171940:CDS | 35.0% |
| CTAACATTATGACACTACGA+GGG | - | chr1_4:56795070-56795089 | None:intergenic | 35.0% | |
| TCTAACATTATGACACTACG+AGG | - | chr1_4:56795071-56795090 | None:intergenic | 35.0% | |
| GCTATCAAAGAAATGTACCA+AGG | + | chr1_4:56795355-56795374 | Msa0171940:intron | 35.0% | |
| ! | ACAACTAGTTTGAGCATACA+AGG | + | chr1_4:56795382-56795401 | Msa0171940:intron | 35.0% |
| TAAGAATCAAAGTTGACCCT+TGG | - | chr1_4:56795447-56795466 | None:intergenic | 35.0% | |
| ! | TGTGTCGAGATAACATCTTT+TGG | - | chr1_4:56795507-56795526 | None:intergenic | 35.0% |
| ACAGTCATAAATGGGAGAAT+GGG | + | chr1_4:56795546-56795565 | Msa0171940:intron | 35.0% | |
| ! | CTCTGATTTTTCCTATGAGT+TGG | - | chr1_4:56795678-56795697 | None:intergenic | 35.0% |
| ! | AGGGATTAGTGTTTAGTCTT+CGG | - | chr1_4:56795800-56795819 | None:intergenic | 35.0% |
| AAACACTAATCCCTGTTTAC+AGG | + | chr1_4:56795806-56795825 | Msa0171940:intron | 35.0% | |
| AACACTAATCCCTGTTTACA+GGG | + | chr1_4:56795807-56795826 | Msa0171940:intron | 35.0% | |
| ! | GCCTTATAGTACTTAGGTTT+TGG | - | chr1_4:56796029-56796048 | None:intergenic | 35.0% |
| TCATAGATTACTGCTATAGG+TGG | + | chr1_4:56796072-56796091 | Msa0171940:intron | 35.0% | |
| TGTTTGACAACATTGGGATT+GGG | - | chr1_4:56796189-56796208 | None:intergenic | 35.0% | |
| AACCTCTGTTTGACAACATT+GGG | - | chr1_4:56796195-56796214 | None:intergenic | 35.0% | |
| TAACCTCTGTTTGACAACAT+TGG | - | chr1_4:56796196-56796215 | None:intergenic | 35.0% | |
| ! | TACGAAGTTTTGCCAAATAG+AGG | + | chr1_4:56796285-56796304 | Msa0171940:intron | 35.0% |
| ! | TTGTGGATTGCAGAAAATAG+CGG | - | chr1_4:56796357-56796376 | None:intergenic | 35.0% |
| GAAAGCAATGTTGTCAATTG+TGG | - | chr1_4:56796374-56796393 | None:intergenic | 35.0% | |
| TTTCATGGTCGTAAAAATGG+GGG | - | chr1_4:56796578-56796597 | None:intergenic | 35.0% | |
| GCATTTCATGGTCGTAAAAA+TGG | - | chr1_4:56796581-56796600 | None:intergenic | 35.0% | |
| ACAAACTTAACACTGTGTTG+TGG | + | chr1_4:56796637-56796656 | Msa0171940:intron | 35.0% | |
| ! | TTGTTATTGGCTATTGCTGA+AGG | + | chr1_4:56796735-56796754 | Msa0171940:intron | 35.0% |
| ATAGGATTCAATCATGGCTT+AGG | - | chr1_4:56796800-56796819 | None:intergenic | 35.0% | |
| CATAGTATCAGGGATTGAAT+AGG | - | chr1_4:56796818-56796837 | None:intergenic | 35.0% | |
| ATTTGAGAAGCAGATAACAG+AGG | - | chr1_4:56797202-56797221 | None:intergenic | 35.0% | |
| !! | TGTCAATGGAAAAGGTATCT+TGG | - | chr1_4:56797245-56797264 | None:intergenic | 35.0% |
| ! | TACCTTTTCCATTGACACAA+AGG | + | chr1_4:56797248-56797267 | Msa0171940:CDS | 35.0% |
| AACCTTTGTGTCAATGGAAA+AGG | - | chr1_4:56797253-56797272 | None:intergenic | 35.0% | |
| TTCAGGTCCATGTTACAAAA+TGG | + | chr1_4:56797271-56797290 | Msa0171940:CDS | 35.0% | |
| TTACCTGTTTCACTCTTACT+TGG | + | chr1_4:56797365-56797384 | Msa0171940:intron | 35.0% | |
| TACCTGTTTCACTCTTACTT+GGG | + | chr1_4:56797366-56797385 | Msa0171940:intron | 35.0% | |
| AGGTACTTTCTCAATCTGTT+TGG | + | chr1_4:56797412-56797431 | Msa0171940:intron | 35.0% | |
| AGGATTGTTTAGTCTCATCT+TGG | + | chr1_4:56797441-56797460 | Msa0171940:CDS | 35.0% | |
| GGATTGTTTAGTCTCATCTT+GGG | + | chr1_4:56797442-56797461 | Msa0171940:CDS | 35.0% | |
| GATTGTTTAGTCTCATCTTG+GGG | + | chr1_4:56797443-56797462 | Msa0171940:CDS | 35.0% | |
| ATTGTTTAGTCTCATCTTGG+GGG | + | chr1_4:56797444-56797463 | Msa0171940:CDS | 35.0% | |
| ATTCGGATTTGATCCTTCAA+AGG | + | chr1_4:56797657-56797676 | Msa0171940:CDS | 35.0% | |
| GGATATTTCCTCTTGAGATA+TGG | - | chr1_4:56797781-56797800 | None:intergenic | 35.0% | |
| CTCAAGAGGAAATATCCATA+TGG | + | chr1_4:56797784-56797803 | Msa0171940:intron | 35.0% | |
| AAGAGGAAATATCCATATGG+AGG | + | chr1_4:56797787-56797806 | Msa0171940:intron | 35.0% | |
| TGTTAGAAACTACAGTAGGT+AGG | - | chr1_4:56798102-56798121 | None:intergenic | 35.0% | |
| ! | GCTTTGTTAGAAACTACAGT+AGG | - | chr1_4:56798106-56798125 | None:intergenic | 35.0% |
| TTACATTCTATTGTTGCGGT+TGG | + | chr1_4:56798319-56798338 | Msa0171940:three_prime_UTR | 35.0% | |
| ! | TCAATATCTTTTGCCAAGGA+TGG | - | chr1_4:56798352-56798371 | None:intergenic | 35.0% |
| TTCTCCAACCTTCTTTCTTA+TGG | - | chr1_4:56798495-56798514 | None:intergenic | 35.0% | |
| AGAGAAACAAGATCGAGAAC+TGG | - | chr1_4:56793916-56793935 | None:intergenic | 40.0% | |
| ! | TAGAATAATGGCGGAAGATC+TGG | + | chr1_4:56794127-56794146 | Msa0171940:exon | 40.0% |
| TGGATACTGCAATCAGAGAT+TGG | + | chr1_4:56794153-56794172 | Msa0171940:CDS | 40.0% | |
| GGATACTGCAATCAGAGATT+GGG | + | chr1_4:56794154-56794173 | Msa0171940:CDS | 40.0% | |
| TATGACGAAGCACACCAATA+AGG | - | chr1_4:56794208-56794227 | None:intergenic | 40.0% | |
| TAACTCTCTGACTCTATCAC+AGG | + | chr1_4:56794644-56794663 | Msa0171940:intron | 40.0% | |
| TGGTCTGTTATTCGTTCCAA+AGG | + | chr1_4:56794749-56794768 | Msa0171940:CDS | 40.0% | |
| GGTCTGTTATTCGTTCCAAA+GGG | + | chr1_4:56794750-56794769 | Msa0171940:CDS | 40.0% | |
| TCAGAGAACATTTGTGCTTG+TGG | - | chr1_4:56794789-56794808 | None:intergenic | 40.0% | |
| AATGTTCTCTGATCCGAACA+TGG | + | chr1_4:56794797-56794816 | Msa0171940:CDS | 40.0% | |
| ATCATATCCATGGCCATGTT+CGG | - | chr1_4:56794813-56794832 | None:intergenic | 40.0% | |
| !! | GCAGACTCTTACTTTTGCTT+GGG | + | chr1_4:56794991-56795010 | Msa0171940:intron | 40.0% |
| CAATCTTTGTAGCAAGCAGA+TGG | - | chr1_4:56795248-56795267 | None:intergenic | 40.0% | |
| ! | TCTGCTTGCTACAAAGATTG+AGG | + | chr1_4:56795248-56795267 | Msa0171940:intron | 40.0% |
| ! | CTGCTTGCTACAAAGATTGA+GGG | + | chr1_4:56795249-56795268 | Msa0171940:intron | 40.0% |
| CTAAATGTGAGTAACCCACT+AGG | - | chr1_4:56795336-56795355 | None:intergenic | 40.0% | |
| GGTACACACTTATAGCTGTT+GGG | - | chr1_4:56795426-56795445 | None:intergenic | 40.0% | |
| TGGTACACACTTATAGCTGT+TGG | - | chr1_4:56795427-56795446 | None:intergenic | 40.0% | |
| ACAGCTATAAGTGTGTACCA+AGG | + | chr1_4:56795427-56795446 | Msa0171940:intron | 40.0% | |
| CAGCTATAAGTGTGTACCAA+GGG | + | chr1_4:56795428-56795447 | Msa0171940:intron | 40.0% | |
| GACTGTCTATGATCTGCAAA+AGG | - | chr1_4:56795532-56795551 | None:intergenic | 40.0% | |
| GACAGTCATAAATGGGAGAA+TGG | + | chr1_4:56795545-56795564 | Msa0171940:intron | 40.0% | |
| CATTCACAATCCCAACTCAT+AGG | + | chr1_4:56795664-56795683 | Msa0171940:intron | 40.0% | |
| TCTGTGTATCCCTGTAAACA+GGG | - | chr1_4:56795819-56795838 | None:intergenic | 40.0% | |
| !! | GGTTCATGATGGATCATGTT+TGG | + | chr1_4:56796093-56796112 | Msa0171940:intron | 40.0% |
| GAGGAAAAATCTAGTATGGG+AGG | - | chr1_4:56796160-56796179 | None:intergenic | 40.0% | |
| GTTTGACAACATTGGGATTG+GGG | - | chr1_4:56796188-56796207 | None:intergenic | 40.0% | |
| CTGTTTGACAACATTGGGAT+TGG | - | chr1_4:56796190-56796209 | None:intergenic | 40.0% | |
| ATCCCAATGTTGTCAAACAG+AGG | + | chr1_4:56796190-56796209 | Msa0171940:intron | 40.0% | |
| TCAAACAGAGGTTATAGCAG+TGG | + | chr1_4:56796202-56796221 | Msa0171940:intron | 40.0% | |
| TGAATTTCGCTATGCTAGAG+AGG | - | chr1_4:56796328-56796347 | None:intergenic | 40.0% | |
| GAGACACAAATATTGCTGGA+AGG | - | chr1_4:56796456-56796475 | None:intergenic | 40.0% | |
| TTCATGGTCGTAAAAATGGG+GGG | - | chr1_4:56796577-56796596 | None:intergenic | 40.0% | |
| ATGTATGCTCTGGCATTTCA+TGG | - | chr1_4:56796593-56796612 | None:intergenic | 40.0% | |
| CTTAATTCTGGTAGCTATCG+TGG | - | chr1_4:56796703-56796722 | None:intergenic | 40.0% | |
| !! | CCTCTGTTCTAGCTTAATTC+TGG | - | chr1_4:56796715-56796734 | None:intergenic | 40.0% |
| CCAGAATTAAGCTAGAACAG+AGG | + | chr1_4:56796712-56796731 | Msa0171940:intron | 40.0% | |
| GCTAGAACAGAGGTTGTTAT+TGG | + | chr1_4:56796722-56796741 | Msa0171940:intron | 40.0% | |
| TGAGATGAAGTAGCAGATTG+AGG | + | chr1_4:56796772-56796791 | Msa0171940:intron | 40.0% | |
| TTTGTCAGAGAACGAGTTCA+AGG | + | chr1_4:56796861-56796880 | Msa0171940:intron | 40.0% | |
| TTGTCAGAGAACGAGTTCAA+GGG | + | chr1_4:56796862-56796881 | Msa0171940:intron | 40.0% | |
| ! | AACTAAAGCCTTTTCCTGCA+AGG | - | chr1_4:56797131-56797150 | None:intergenic | 40.0% |
| AACAGAGGCAAGGAATACAA+GGG | - | chr1_4:56797187-56797206 | None:intergenic | 40.0% | |
| TAACAGAGGCAAGGAATACA+AGG | - | chr1_4:56797188-56797207 | None:intergenic | 40.0% | |
| TTCCATTGACACAAAGGTTC+AGG | + | chr1_4:56797254-56797273 | Msa0171940:CDS | 40.0% | |
| AACCCAAGTAAGAGTGAAAC+AGG | - | chr1_4:56797371-56797390 | None:intergenic | 40.0% | |
| ! | CTCAATCTGTTTGGCTTAAG+AGG | + | chr1_4:56797421-56797440 | Msa0171940:CDS | 40.0% |
| CAAAGAATGATGCAAATGGG+TGG | + | chr1_4:56797631-56797650 | Msa0171940:CDS | 40.0% | |
| CCTCTTGAGATATGGAGAAA+GGG | - | chr1_4:56797773-56797792 | None:intergenic | 40.0% | |
| TCCTCTTGAGATATGGAGAA+AGG | - | chr1_4:56797774-56797793 | None:intergenic | 40.0% | |
| TAAGCTACAGAACCTCCATA+TGG | - | chr1_4:56797802-56797821 | None:intergenic | 40.0% | |
| GCTGCCACCTTTATAAGAAA+AGG | + | chr1_4:56797925-56797944 | Msa0171940:intron | 40.0% | |
| AATTAGCCAATTTCCCAGGA+AGG | - | chr1_4:56797974-56797993 | None:intergenic | 40.0% | |
| GGAAATTGGCTAATTGCCTT+GGG | + | chr1_4:56797979-56797998 | Msa0171940:intron | 40.0% | |
| TTGGGATGCTATACAAGCAA+GGG | + | chr1_4:56797997-56798016 | Msa0171940:intron | 40.0% | |
| AAATGTCGAACTGTGACAAG+TGG | + | chr1_4:56798074-56798093 | Msa0171940:intron | 40.0% | |
| TTGACATAACCCAACATGAC+TGG | + | chr1_4:56798188-56798207 | Msa0171940:CDS | 40.0% | |
| TGACATAACCCAACATGACT+GGG | + | chr1_4:56798189-56798208 | Msa0171940:CDS | 40.0% | |
| TCAGCATGATGCTCGAAATT+TGG | - | chr1_4:56798220-56798239 | None:intergenic | 40.0% | |
| GAATGTAAGTGTTTCCCCTA+AGG | - | chr1_4:56798307-56798326 | None:intergenic | 40.0% | |
| ACCTTCTTTCTTATGGCTAC+TGG | - | chr1_4:56798488-56798507 | None:intergenic | 40.0% | |
| GTAGCCATAAGAAAGAAGGT+TGG | + | chr1_4:56798488-56798507 | Msa0171940:three_prime_UTR | 40.0% | |
| CCTCATCAGATTCTACATCG+CGG | + | chr1_4:56793972-56793991 | Msa0171940:five_prime_UTR | 45.0% | |
| !! | AATGGCGGAAGATCTGGTTT+TGG | + | chr1_4:56794133-56794152 | Msa0171940:exon | 45.0% |
| TTGAGAAGAACGCAGAAGCT+TGG | - | chr1_4:56794237-56794256 | None:intergenic | 45.0% | |
| GGCAAGTTATGCTTAGAGCT+CGG | + | chr1_4:56794374-56794393 | Msa0171940:intron | 45.0% | |
| CATTTGTGCTTGTGGATTCG+TGG | - | chr1_4:56794781-56794800 | None:intergenic | 45.0% | |
| !! | GGCAGACTCTTACTTTTGCT+TGG | + | chr1_4:56794990-56795009 | Msa0171940:intron | 45.0% |
| TCAAACTAGTTGTGACCCCT+TGG | - | chr1_4:56795375-56795394 | None:intergenic | 45.0% | |
| GTCTGTGTATCCCTGTAAAC+AGG | - | chr1_4:56795820-56795839 | None:intergenic | 45.0% | |
| CTGCTATAGGTGGTTCATGA+TGG | + | chr1_4:56796082-56796101 | Msa0171940:intron | 45.0% | |
| TATAGCAGTGGTATCTGCTC+TGG | + | chr1_4:56796214-56796233 | Msa0171940:intron | 45.0% | |
| ! | GTGCTGCTATAGCCTCTATT+TGG | - | chr1_4:56796300-56796319 | None:intergenic | 45.0% |
| ! | TCTTTTGTGTGTCCAGACGT+TGG | + | chr1_4:56796474-56796493 | Msa0171940:intron | 45.0% |
| ! | TATCGTGGCCAATCCTTTTG+TGG | - | chr1_4:56796688-56796707 | None:intergenic | 45.0% |
| TATCGTTGCCTTGCAGGAAA+AGG | + | chr1_4:56797120-56797139 | Msa0171940:intron | 45.0% | |
| AGAAGCAGATAACAGAGGCA+AGG | - | chr1_4:56797197-56797216 | None:intergenic | 45.0% | |
| GACCTGAACCTTTGTGTCAA+TGG | - | chr1_4:56797259-56797278 | None:intergenic | 45.0% | |
| AGCTAACATCAACTGTGCTG+AGG | - | chr1_4:56797303-56797322 | None:intergenic | 45.0% | |
| CTCATCTTGGGGGAAGAAAA+TGG | + | chr1_4:56797454-56797473 | Msa0171940:CDS | 45.0% | |
| AGAATGATGCAAATGGGTGG+TGG | + | chr1_4:56797634-56797653 | Msa0171940:CDS | 45.0% | |
| !! | ATGCAAATGGGTGGTGGATT+CGG | + | chr1_4:56797640-56797659 | Msa0171940:CDS | 45.0% |
| AGATATGGAGAAAGGGAGGA+GGG | - | chr1_4:56797766-56797785 | None:intergenic | 45.0% | |
| CTTGAGATATGGAGAAAGGG+AGG | - | chr1_4:56797770-56797789 | None:intergenic | 45.0% | |
| CCCTTTCTCCATATCTCAAG+AGG | + | chr1_4:56797770-56797789 | Msa0171940:intron | 45.0% | |
| GTAGCTTAACTACTTCGCTG+AGG | + | chr1_4:56797814-56797833 | Msa0171940:intron | 45.0% | |
| !! | AATAGTTCTAGGCTCCTTCC+TGG | + | chr1_4:56797957-56797976 | Msa0171940:intron | 45.0% |
| !! | ATAGTTCTAGGCTCCTTCCT+GGG | + | chr1_4:56797958-56797977 | Msa0171940:intron | 45.0% |
| AGGCAATTAGCCAATTTCCC+AGG | - | chr1_4:56797978-56797997 | None:intergenic | 45.0% | |
| GGGAAATTGGCTAATTGCCT+TGG | + | chr1_4:56797978-56797997 | Msa0171940:intron | 45.0% | |
| CTTGCTTGTATAGCATCCCA+AGG | - | chr1_4:56797998-56798017 | None:intergenic | 45.0% | |
| CTTGGGATGCTATACAAGCA+AGG | + | chr1_4:56797996-56798015 | Msa0171940:intron | 45.0% | |
| TGGGATGCTATACAAGCAAG+GGG | + | chr1_4:56797998-56798017 | Msa0171940:intron | 45.0% | |
| CTATACAAGCAAGGGGTTCA+GGG | + | chr1_4:56798005-56798024 | Msa0171940:intron | 45.0% | |
| ! | TCTTTTGCCAAGGATGGCAA+AGG | - | chr1_4:56798346-56798365 | None:intergenic | 45.0% |
| GCCAGTAGCCATAAGAAAGA+AGG | + | chr1_4:56798484-56798503 | Msa0171940:three_prime_UTR | 45.0% | |
| !!! | TTTAATTTTTTGTATATATA+CGG | + | chr1_4:56795172-56795191 | Msa0171940:intron | 5.0% |
| CTATCGAAAGACGAGGTTGC+CGG | + | chr1_4:56793870-56793889 | Msa0171940:five_prime_UTR | 50.0% | |
| GATCGATTGTGTCACACAGC+CGG | - | chr1_4:56793892-56793911 | None:intergenic | 50.0% | |
| CCGCGATGTAGAATCTGATG+AGG | - | chr1_4:56793975-56793994 | None:intergenic | 50.0% | |
| AGCTCGGAATTTACGTGCTG+CGG | + | chr1_4:56794390-56794409 | Msa0171940:CDS | 50.0% | |
| GGGCACGAAAAGCCTTAGAA+GGG | - | chr1_4:56794426-56794445 | None:intergenic | 50.0% | |
| GGATCATGTTTGGTTGCCGT+TGG | + | chr1_4:56796103-56796122 | Msa0171940:intron | 50.0% | |
| CATTGGGATTGGGGAGAAAG+AGG | - | chr1_4:56796179-56796198 | None:intergenic | 50.0% | |
| TGGTATCTGCTCTGGCATAG+TGG | + | chr1_4:56796222-56796241 | Msa0171940:intron | 50.0% | |
| ! | AACTGTTGGTTAGGGTGGCT+GGG | - | chr1_4:56796502-56796521 | None:intergenic | 50.0% |
| ! | AGAGCAACTGTTGGTTAGGG+TGG | - | chr1_4:56796507-56796526 | None:intergenic | 50.0% |
| ACCCTAACCAACAGTTGCTC+TGG | + | chr1_4:56796506-56796525 | Msa0171940:intron | 50.0% | |
| ! | GCCAGAGCAACTGTTGGTTA+GGG | - | chr1_4:56796510-56796529 | None:intergenic | 50.0% |
| ! | TGCCAGAGCAACTGTTGGTT+AGG | - | chr1_4:56796511-56796530 | None:intergenic | 50.0% |
| TCAACTGCCAGAGCAACTGT+TGG | - | chr1_4:56796516-56796535 | None:intergenic | 50.0% | |
| TCGTAAAAATGGGGGGCAGA+GGG | - | chr1_4:56796570-56796589 | None:intergenic | 50.0% | |
| TGTTCCTCCACTGCCACAAA+AGG | + | chr1_4:56796672-56796691 | Msa0171940:intron | 50.0% | |
| ! | CAATCCTTTTGTGGCAGTGG+AGG | - | chr1_4:56796679-56796698 | None:intergenic | 50.0% |
| CTCCACTGCCACAAAAGGAT+TGG | + | chr1_4:56796677-56796696 | Msa0171940:intron | 50.0% | |
| ACTCGATATCGTTGCCTTGC+AGG | + | chr1_4:56797114-56797133 | Msa0171940:intron | 50.0% | |
| GAGATATGGAGAAAGGGAGG+AGG | - | chr1_4:56797767-56797786 | None:intergenic | 50.0% | |
| TAGGCTCCTTCCTGGGAAAT+TGG | + | chr1_4:56797965-56797984 | Msa0171940:intron | 50.0% | |
| GCTATACAAGCAAGGGGTTC+AGG | + | chr1_4:56798004-56798023 | Msa0171940:intron | 50.0% | |
| TGGCAAAGCCCAGTCATGTT+GGG | - | chr1_4:56798200-56798219 | None:intergenic | 50.0% | |
| TTGGCAAAGCCCAGTCATGT+TGG | - | chr1_4:56798201-56798220 | None:intergenic | 50.0% | |
| ATGTGTAGTGTAGGGCTTCG+CGG | - | chr1_4:56798598-56798617 | None:intergenic | 50.0% | |
| CGGGCACGAAAAGCCTTAGA+AGG | - | chr1_4:56794427-56794446 | None:intergenic | 55.0% | |
| GTGCTTGTGGATTCGTGGCT+TGG | - | chr1_4:56794776-56794795 | None:intergenic | 55.0% | |
| CTCTGATCCGAACATGGCCA+TGG | + | chr1_4:56794803-56794822 | Msa0171940:CDS | 55.0% | |
| GGAGGAAGGGAAGAAGGAAG+AGG | - | chr1_4:56796400-56796419 | None:intergenic | 55.0% | |
| ACTCGCAACGGCCAGGTAAA+GGG | - | chr1_4:56796431-56796450 | None:intergenic | 55.0% | |
| TGCTGGAAGGAGACTCGCAA+CGG | - | chr1_4:56796443-56796462 | None:intergenic | 55.0% | |
| ! | CAACTGTTGGTTAGGGTGGC+TGG | - | chr1_4:56796503-56796522 | None:intergenic | 55.0% |
| AAAAATGGGGGGCAGAGGGA+GGG | - | chr1_4:56796566-56796585 | None:intergenic | 55.0% | |
| TAAAAATGGGGGGCAGAGGG+AGG | - | chr1_4:56796567-56796586 | None:intergenic | 55.0% | |
| GTCGTAAAAATGGGGGGCAG+AGG | - | chr1_4:56796571-56796590 | None:intergenic | 55.0% | |
| ! | GTGGAGGAACAGAGTTGGTC+AGG | - | chr1_4:56796663-56796682 | None:intergenic | 55.0% |
| TGGCAGTGGAGGAACAGAGT+TGG | - | chr1_4:56796668-56796687 | None:intergenic | 55.0% | |
| ! | GGCCAATCCTTTTGTGGCAG+TGG | - | chr1_4:56796682-56796701 | None:intergenic | 55.0% |
| ACAAGCAAGGGGTTCAGGGT+AGG | + | chr1_4:56798009-56798028 | Msa0171940:intron | 55.0% | |
| GGTTGGACCTTTGCCATCCT+TGG | + | chr1_4:56798336-56798355 | Msa0171940:three_prime_UTR | 55.0% | |
| ! | GGATTCGTGGCTTGGCCCTT+TGG | - | chr1_4:56794768-56794787 | None:intergenic | 60.0% |
| AACGGCCAGGTAAAGGGGTG+CGG | - | chr1_4:56796425-56796444 | None:intergenic | 60.0% | |
| CTCGCAACGGCCAGGTAAAG+GGG | - | chr1_4:56796430-56796449 | None:intergenic | 60.0% | |
| GACTCGCAACGGCCAGGTAA+AGG | - | chr1_4:56796432-56796451 | None:intergenic | 60.0% | |
| AAAATGGGGGGCAGAGGGAG+GGG | - | chr1_4:56796565-56796584 | None:intergenic | 60.0% | |
| ! | ACGGCCAGGTAAAGGGGTGC+GGG | - | chr1_4:56796424-56796443 | None:intergenic | 65.0% |
| GAAGGAGACTCGCAACGGCC+AGG | - | chr1_4:56796438-56796457 | None:intergenic | 65.0% | |
| GGTGGCTGGGTTCCAACGTC+TGG | - | chr1_4:56796489-56796508 | None:intergenic | 65.0% | |
| AAATGGGGGGCAGAGGGAGG+GGG | - | chr1_4:56796564-56796583 | None:intergenic | 65.0% | |
| GCTACGTCAGCAGTCGCTCC+TGG | + | chr1_4:56797320-56797339 | Msa0171940:CDS | 65.0% | |
| GCGGGCGGAGGAAGGGAAGA+AGG | - | chr1_4:56796406-56796425 | None:intergenic | 70.0% | |
| ! | AAGGGGTGCGGGCGGAGGAA+GGG | - | chr1_4:56796413-56796432 | None:intergenic | 70.0% |
| ! | AAAGGGGTGCGGGCGGAGGA+AGG | - | chr1_4:56796414-56796433 | None:intergenic | 70.0% |
| ! | AGGTAAAGGGGTGCGGGCGG+AGG | - | chr1_4:56796418-56796437 | None:intergenic | 70.0% |
| TCCGCCCGCACCCCTTTACC+TGG | + | chr1_4:56796417-56796436 | Msa0171940:intron | 70.0% | |
| ! | GCCAGGTAAAGGGGTGCGGG+CGG | - | chr1_4:56796421-56796440 | None:intergenic | 70.0% |
| TGGGGAGGGCGAAGTGGTGC+AGG | - | chr1_4:56796539-56796558 | None:intergenic | 70.0% | |
| AGAGGGAGGGGGGATGGGGA+GGG | - | chr1_4:56796553-56796572 | None:intergenic | 70.0% | |
| AATGGGGGGCAGAGGGAGGG+GGG | - | chr1_4:56796563-56796582 | None:intergenic | 70.0% | |
| GGGGGATGGGGAGGGCGAAG+TGG | - | chr1_4:56796545-56796564 | None:intergenic | 75.0% | |
| CAGAGGGAGGGGGGATGGGG+AGG | - | chr1_4:56796554-56796573 | None:intergenic | 75.0% | |
| GGGCAGAGGGAGGGGGGATG+GGG | - | chr1_4:56796557-56796576 | None:intergenic | 75.0% | |
| GGGGCAGAGGGAGGGGGGAT+GGG | - | chr1_4:56796558-56796577 | None:intergenic | 75.0% | |
| ! | GGGGGCAGAGGGAGGGGGGA+TGG | - | chr1_4:56796559-56796578 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 56793774 | 56798622 | 56793774 | ID=Msa0171940;Name=Msa0171940 |
| chr1_4 | mRNA | 56793774 | 56798622 | 56793774 | ID=Msa0171940-mRNA-1;Parent=Msa0171940;Name=Msa0171940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=239|1|1|1|0.87|0.77|9|355|247 |
| chr1_4 | exon | 56793774 | 56793993 | 56793774 | ID=Msa0171940-mRNA-1:exon:17243;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56794115 | 56794285 | 56794115 | ID=Msa0171940-mRNA-1:exon:17244;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56794375 | 56794468 | 56794375 | ID=Msa0171940-mRNA-1:exon:17245;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56794744 | 56794863 | 56794744 | ID=Msa0171940-mRNA-1:exon:17246;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56794995 | 56795043 | 56794995 | ID=Msa0171940-mRNA-1:exon:17247;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56797242 | 56797341 | 56797242 | ID=Msa0171940-mRNA-1:exon:17248;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56797414 | 56797475 | 56797414 | ID=Msa0171940-mRNA-1:exon:17249;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56797617 | 56797678 | 56797617 | ID=Msa0171940-mRNA-1:exon:17250;Parent=Msa0171940-mRNA-1 |
| chr1_4 | exon | 56798163 | 56798622 | 56798163 | ID=Msa0171940-mRNA-1:exon:17251;Parent=Msa0171940-mRNA-1 |
| chr1_4 | five_prime_UTR | 56793774 | 56793993 | 56793774 | ID=Msa0171940-mRNA-1:five_prime_utr;Parent=Msa0171940-mRNA-1 |
| chr1_4 | five_prime_UTR | 56794115 | 56794133 | 56794115 | ID=Msa0171940-mRNA-1:five_prime_utr;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56794134 | 56794285 | 56794134 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56794375 | 56794468 | 56794375 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56794744 | 56794863 | 56794744 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56794995 | 56795043 | 56794995 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56797242 | 56797341 | 56797242 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56797414 | 56797475 | 56797414 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56797617 | 56797678 | 56797617 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | CDS | 56798163 | 56798267 | 56798163 | ID=Msa0171940-mRNA-1:cds;Parent=Msa0171940-mRNA-1 |
| chr1_4 | three_prime_UTR | 56798268 | 56798622 | 56798268 | ID=Msa0171940-mRNA-1:three_prime_utr;Parent=Msa0171940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
