Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530480 | XP_003604384.1 | 92.083 | 240 | 16 | 1 | 1 | 240 | 1 | 237 | 3.83e-145 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530480 | G7JGY8 | 92.083 | 240 | 16 | 1 | 1 | 240 | 1 | 237 | 1.83e-145 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0530480 | Msa0530490 | 0.956153 | 5.756971e-114 | -8.615850e-47 |
| Msa0530480 | Msa0587350 | 0.816558 | 5.197533e-52 | -8.615850e-47 |
| Msa0530480 | Msa0627200 | 0.897287 | 1.627811e-76 | -8.615850e-47 |
| Msa0530480 | Msa0665210 | 0.825050 | 5.789781e-54 | -8.615850e-47 |
| Msa0530480 | Msa1225800 | 0.803142 | 4.014072e-49 | -8.615850e-47 |
| Msa0530480 | Msa1330840 | 0.806821 | 6.829429e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530480 | MtrunA17_Chr4g0003311 | 93.548 | 155 | 7 | 1 | 1 | 155 | 1 | 152 | 2.03e-84 | 249 |
| Msa0530480 | MtrunA17_Chr2g0333081 | 51.383 | 253 | 105 | 5 | 1 | 238 | 1 | 250 | 2.24e-61 | 194 |
| Msa0530480 | MtrunA17_Chr4g0063891 | 39.382 | 259 | 120 | 5 | 1 | 223 | 1 | 258 | 1.35e-49 | 164 |
| Msa0530480 | MtrunA17_Chr5g0411051 | 53.922 | 102 | 47 | 0 | 124 | 225 | 119 | 220 | 7.05e-35 | 125 |
| Msa0530480 | MtrunA17_Chr4g0003301 | 78.462 | 65 | 14 | 0 | 154 | 218 | 6 | 70 | 3.95e-34 | 117 |
| Msa0530480 | MtrunA17_Chr7g0262061 | 44.262 | 122 | 64 | 2 | 110 | 230 | 211 | 329 | 5.32e-30 | 114 |
| Msa0530480 | MtrunA17_Chr7g0262541 | 43.697 | 119 | 64 | 1 | 115 | 233 | 228 | 343 | 2.31e-29 | 113 |
| Msa0530480 | MtrunA17_Chr1g0186111 | 35.811 | 148 | 94 | 1 | 84 | 231 | 86 | 232 | 2.73e-23 | 96.7 |
| Msa0530480 | MtrunA17_Chr1g0186111 | 40.000 | 110 | 65 | 1 | 121 | 229 | 266 | 375 | 4.21e-19 | 85.1 |
| Msa0530480 | MtrunA17_Chr3g0104511 | 36.538 | 104 | 66 | 0 | 126 | 229 | 398 | 501 | 3.57e-18 | 83.2 |
| Msa0530480 | MtrunA17_Chr5g0436741 | 33.028 | 109 | 72 | 1 | 118 | 225 | 288 | 396 | 8.04e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530480 | AT5G20190.1 | 32.296 | 257 | 139 | 4 | 1 | 225 | 1 | 254 | 1.65e-37 | 133 |
| Msa0530480 | AT4G32340.1 | 58.000 | 100 | 41 | 1 | 127 | 225 | 110 | 209 | 1.60e-36 | 129 |
| Msa0530480 | AT4G17940.1 | 52.941 | 102 | 48 | 0 | 124 | 225 | 147 | 248 | 3.58e-34 | 124 |
| Msa0530480 | AT1G04530.1 | 42.105 | 95 | 54 | 1 | 130 | 224 | 124 | 217 | 5.27e-20 | 87.0 |
| Msa0530480 | AT2G29670.1 | 37.864 | 103 | 64 | 0 | 123 | 225 | 416 | 518 | 1.08e-18 | 85.1 |
| Msa0530480 | AT2G29670.2 | 37.864 | 103 | 64 | 0 | 123 | 225 | 416 | 518 | 1.08e-18 | 85.1 |
| Msa0530480 | AT1G07280.3 | 35.577 | 104 | 67 | 0 | 126 | 229 | 434 | 537 | 5.02e-18 | 83.2 |
| Msa0530480 | AT1G07280.1 | 35.577 | 104 | 67 | 0 | 126 | 229 | 434 | 537 | 5.02e-18 | 83.2 |
| Msa0530480 | AT1G07280.2 | 35.577 | 104 | 67 | 0 | 126 | 229 | 434 | 537 | 5.02e-18 | 83.2 |
| Msa0530480 | AT3G47080.1 | 34.615 | 104 | 68 | 0 | 126 | 229 | 399 | 502 | 5.17e-14 | 71.2 |
Find 46 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATATCATACCAATTATC+TGG | 0.209326 | 4_1:+4549522 | None:intergenic |
| CCATCTATGCAGAATTAATA+TGG | 0.211193 | 4_1:-4549605 | Msa0530480:CDS |
| CTTAAAACTGATATTGTTCT+AGG | 0.215607 | 4_1:+4551045 | None:intergenic |
| CCATATTAATTCTGCATAGA+TGG | 0.249294 | 4_1:+4549605 | None:intergenic |
| GAGGACTCTTTGGAATTATA+AGG | 0.297415 | 4_1:+4551096 | None:intergenic |
| CTTCATATGCAAAATTCCTT+TGG | 0.300863 | 4_1:-4548700 | Msa0530480:CDS |
| AAGCTCAAGAGAGGACTCTT+TGG | 0.327488 | 4_1:+4551086 | None:intergenic |
| TTCAAAGTGACCCAGATAAT+TGG | 0.327872 | 4_1:-4549533 | Msa0530480:intron |
| TTCATATGCAAAATTCCTTT+GGG | 0.366011 | 4_1:-4548699 | Msa0530480:CDS |
| TTACTACATGGCACAAGAAA+TGG | 0.383185 | 4_1:+4550967 | None:intergenic |
| GGTAACAATGAACTTAGAAT+TGG | 0.408424 | 4_1:+4551117 | None:intergenic |
| ACATGTGATCCGATTTAATT+CGG | 0.423808 | 4_1:+4548648 | None:intergenic |
| GGTGTGCTTCTATCATGTTT+TGG | 0.426220 | 4_1:+4550749 | None:intergenic |
| AGAGGCTCAGATGGTGGAAA+TGG | 0.433784 | 4_1:-4550832 | Msa0530480:CDS |
| GAAATAATCATGGTAGAGAT+AGG | 0.441347 | 4_1:-4550786 | Msa0530480:CDS |
| TAAAGACTACCGAATTAAAT+CGG | 0.445048 | 4_1:-4548657 | Msa0530480:CDS |
| GCAAACTTCAGTGAAGGGAG+GGG | 0.456243 | 4_1:-4550890 | Msa0530480:CDS |
| TTTAATGAAGGAAATAATCA+TGG | 0.466976 | 4_1:-4550796 | Msa0530480:CDS |
| CAAAGTGAAAGAGGCTAAGA+TGG | 0.477457 | 4_1:-4550914 | Msa0530480:CDS |
| AATAATATGCAGCTATGTCC+TGG | 0.477958 | 4_1:-4548723 | Msa0530480:intron |
| CGAAAGAAACAAAGTGAAAG+AGG | 0.478819 | 4_1:-4550923 | Msa0530480:CDS |
| CATCTATGCAGAATTAATAT+GGG | 0.481359 | 4_1:-4549604 | Msa0530480:CDS |
| TTGAAGGTCTAACTTGGCTA+AGG | 0.496888 | 4_1:+4551011 | None:intergenic |
| GGATGTAAAGGTGGTGGAAG+AGG | 0.508579 | 4_1:-4550850 | Msa0530480:CDS |
| TCAGATGGTGGAAATGGAAG+AGG | 0.527871 | 4_1:-4550826 | Msa0530480:CDS |
| TGCAAACTTCAGTGAAGGGA+GGG | 0.537406 | 4_1:-4550891 | Msa0530480:CDS |
| AGAAGTAATGGTGGATGTAA+AGG | 0.542026 | 4_1:-4550862 | Msa0530480:CDS |
| GGTGGTGGAAGAGGCTCAGA+TGG | 0.550677 | 4_1:-4550841 | Msa0530480:CDS |
| ATATATCATACCAATTATCT+GGG | 0.554667 | 4_1:+4549523 | None:intergenic |
| CAAACTTCAGTGAAGGGAGG+GGG | 0.562041 | 4_1:-4550889 | Msa0530480:CDS |
| TGGGAAACAGAGAAGAATGC+TGG | 0.574769 | 4_1:-4549585 | Msa0530480:CDS |
| GTACTTAGAACATTACTACA+TGG | 0.576469 | 4_1:+4550955 | None:intergenic |
| GATGGTGCAAACTTCAGTGA+AGG | 0.585860 | 4_1:-4550896 | Msa0530480:CDS |
| AATGGTGGATGTAAAGGTGG+TGG | 0.586769 | 4_1:-4550856 | Msa0530480:CDS |
| CCAAGCAAAAGAGCATCACA+AGG | 0.607278 | 4_1:+4550727 | None:intergenic |
| GGTGGAAGAGGCTCAGATGG+TGG | 0.608176 | 4_1:-4550838 | Msa0530480:CDS |
| GTGCAAACTTCAGTGAAGGG+AGG | 0.614647 | 4_1:-4550892 | Msa0530480:CDS |
| CAGATGGTGGAAATGGAAGA+GGG | 0.618945 | 4_1:-4550825 | Msa0530480:CDS |
| ATGGTGCAAACTTCAGTGAA+GGG | 0.622046 | 4_1:-4550895 | Msa0530480:CDS |
| AGTATGTTCAAGCTCAAGAG+AGG | 0.623493 | 4_1:+4551077 | None:intergenic |
| AGTAATGGTGGATGTAAAGG+TGG | 0.627702 | 4_1:-4550859 | Msa0530480:CDS |
| ATGGTGGAAATGGAAGAGGG+TGG | 0.650938 | 4_1:-4550822 | Msa0530480:CDS |
| GGTCTAACTTGGCTAAGGTG+TGG | 0.652832 | 4_1:+4551016 | None:intergenic |
| TGAACTTAGAATTGGTGCAG+AGG | 0.666303 | 4_1:+4551125 | None:intergenic |
| GACATAATATGACCATCACC+AGG | 0.669196 | 4_1:+4549627 | None:intergenic |
| CAAGCAAAAGAGCATCACAA+GGG | 0.724452 | 4_1:+4550728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTATTTTTTTGCA+TGG | - | chr4_1:4549174-4549193 | Msa0530480:intron | 10.0% |
| !! | AAAAGAAAATAATGAAATTA+AGG | - | chr4_1:4549238-4549257 | Msa0530480:intron | 10.0% |
| !! | AAAGAAAATAATGAAATTAA+GGG | - | chr4_1:4549239-4549258 | Msa0530480:intron | 10.0% |
| !! | TTTGAAAATAAAACTAAAAA+TGG | + | chr4_1:4549283-4549302 | None:intergenic | 10.0% |
| !! | GATATTTAATGAAAATAATT+AGG | - | chr4_1:4549667-4549686 | Msa0530480:CDS | 10.0% |
| !!! | CTATATAAATGTATTATTTT+TGG | + | chr4_1:4550652-4550671 | None:intergenic | 10.0% |
| !! | TTCATAGTTATTAAATTATT+GGG | - | chr4_1:4550765-4550784 | Msa0530480:CDS | 10.0% |
| !! | ATATATTATATATAACATCA+TGG | + | chr4_1:4550838-4550857 | None:intergenic | 10.0% |
| !! | TAATGTTAATAAATTAACAT+TGG | + | chr4_1:4550907-4550926 | None:intergenic | 10.0% |
| !! | ATAAAAATAAATAGAGATTA+AGG | + | chr4_1:4551017-4551036 | None:intergenic | 10.0% |
| !! | TATCATTAAAAATTCTCTTT+GGG | + | chr4_1:4549866-4549885 | None:intergenic | 15.0% |
| !! | ATATCATTAAAAATTCTCTT+TGG | + | chr4_1:4549867-4549886 | None:intergenic | 15.0% |
| !!! | ATATTTTGACTATCTTTTTA+AGG | - | chr4_1:4550342-4550361 | Msa0530480:intron | 15.0% |
| !! | GTTCATAGTTATTAAATTAT+TGG | - | chr4_1:4550764-4550783 | Msa0530480:CDS | 15.0% |
| !! | AGATTAAGGTAATATAAAAT+TGG | + | chr4_1:4551003-4551022 | None:intergenic | 15.0% |
| !! | TTTAATGAAGGAAATAATCA+TGG | - | chr4_1:4549037-4549056 | Msa0530480:intron | 20.0% |
| !!! | AAATTATGGAAAGTTTTTGA+AGG | - | chr4_1:4549129-4549148 | Msa0530480:intron | 20.0% |
| !! | GTTGTATAATATATTAACAC+AGG | - | chr4_1:4549485-4549504 | Msa0530480:intron | 20.0% |
| !! | TTAATCTTTATGTGTCTTAA+TGG | + | chr4_1:4549646-4549665 | None:intergenic | 20.0% |
| !! | ATCATTAAAAATTCTCTTTG+GGG | + | chr4_1:4549865-4549884 | None:intergenic | 20.0% |
| !! | ATATATCATACCAATTATCT+GGG | + | chr4_1:4550313-4550332 | None:intergenic | 20.0% |
| !! | TATATATCATACCAATTATC+TGG | + | chr4_1:4550314-4550333 | None:intergenic | 20.0% |
| !! | ATTTATAACTTATGAATCAC+CGG | + | chr4_1:4550457-4550476 | None:intergenic | 20.0% |
| !!! | TCTTTTATGGTGTTTATTTT+GGG | + | chr4_1:4550506-4550525 | None:intergenic | 20.0% |
| !!! | ATAATTTAAGGTGTCTTTTA+TGG | + | chr4_1:4550519-4550538 | None:intergenic | 20.0% |
| !! | TTAATAACTATGAACTTAGT+GGG | + | chr4_1:4550759-4550778 | None:intergenic | 20.0% |
| !! | TTTAATAACTATGAACTTAG+TGG | + | chr4_1:4550760-4550779 | None:intergenic | 20.0% |
| !!! | TTTTGATGTATTATAAAACG+TGG | - | chr4_1:4550793-4550812 | Msa0530480:CDS | 20.0% |
| !! | ATATATAATGAGTCAAAGTT+TGG | - | chr4_1:4550852-4550871 | Msa0530480:CDS | 20.0% |
| !! | TAAGGTAATATAAAATTGGT+TGG | + | chr4_1:4550999-4551018 | None:intergenic | 20.0% |
| ! | CTTAAAACTGATATTGTTCT+AGG | + | chr4_1:4548791-4548810 | None:intergenic | 25.0% |
| !! | TTAATTTTCTAACAGTGAGA+TGG | - | chr4_1:4549314-4549333 | Msa0530480:intron | 25.0% |
| !! | TTTTGTGTCAAATAGTATAG+TGG | - | chr4_1:4549904-4549923 | Msa0530480:intron | 25.0% |
| !! | CTGATTTTCATTTTGCAAAT+AGG | - | chr4_1:4550127-4550146 | Msa0530480:intron | 25.0% |
| ! | CATCTATGCAGAATTAATAT+GGG | - | chr4_1:4550229-4550248 | Msa0530480:intron | 25.0% |
| ! | AAATTAAAGACGTCGTATAT+AGG | - | chr4_1:4550473-4550492 | Msa0530480:intron | 25.0% |
| !! | GTCTTTTATGGTGTTTATTT+TGG | + | chr4_1:4550507-4550526 | None:intergenic | 25.0% |
| ! | ACAAAGTGCACAATAATTTA+AGG | + | chr4_1:4550531-4550550 | None:intergenic | 25.0% |
| ! | TATATATAACATCATGGAGA+AGG | + | chr4_1:4550832-4550851 | None:intergenic | 25.0% |
| ! | TATTAACATTATCTTGAGAG+TGG | - | chr4_1:4550916-4550935 | Msa0530480:CDS | 25.0% |
| ! | ATTAACATTATCTTGAGAGT+GGG | - | chr4_1:4550917-4550936 | Msa0530480:CDS | 25.0% |
| !! | TATTTCTGTTTACCAATGAA+AGG | - | chr4_1:4551034-4551053 | Msa0530480:CDS | 25.0% |
| ! | ATTTCTGTTTACCAATGAAA+GGG | - | chr4_1:4551035-4551054 | Msa0530480:CDS | 25.0% |
| ! | AAGTATCAACAAGATAAATC+CGG | + | chr4_1:4551069-4551088 | None:intergenic | 25.0% |
| ! | TTCATATGCAAAATTCCTTT+GGG | - | chr4_1:4551134-4551153 | Msa0530480:CDS | 25.0% |
| ! | TAAAGACTACCGAATTAAAT+CGG | - | chr4_1:4551176-4551195 | Msa0530480:five_prime_UTR | 25.0% |
| GGTAACAATGAACTTAGAAT+TGG | + | chr4_1:4548719-4548738 | None:intergenic | 30.0% | |
| !! | TATGACTTGATGAGTTTTGA+AGG | + | chr4_1:4548841-4548860 | None:intergenic | 30.0% |
| GTACTTAGAACATTACTACA+TGG | + | chr4_1:4548881-4548900 | None:intergenic | 30.0% | |
| GAAATAATCATGGTAGAGAT+AGG | - | chr4_1:4549047-4549066 | Msa0530480:intron | 30.0% | |
| !! | TTATGGAAAGTTTTTGAAGG+AGG | - | chr4_1:4549132-4549151 | Msa0530480:intron | 30.0% |
| ACACTTAAAGCAATGTTACT+TGG | - | chr4_1:4549512-4549531 | Msa0530480:intron | 30.0% | |
| ! | CACTTAAAGCAATGTTACTT+GGG | - | chr4_1:4549513-4549532 | Msa0530480:intron | 30.0% |
| ! | GAGCTTACACATTTTAAATG+TGG | - | chr4_1:4549930-4549949 | Msa0530480:intron | 30.0% |
| ACAATGCATATTATATGCAG+GGG | + | chr4_1:4549987-4550006 | None:intergenic | 30.0% | |
| GACAATGCATATTATATGCA+GGG | + | chr4_1:4549988-4550007 | None:intergenic | 30.0% | |
| AGACAATGCATATTATATGC+AGG | + | chr4_1:4549989-4550008 | None:intergenic | 30.0% | |
| AATCAGAACAACGTGAAATA+CGG | + | chr4_1:4550113-4550132 | None:intergenic | 30.0% | |
| ! | TCATTTTGCAAATAGGTTTG+TGG | - | chr4_1:4550134-4550153 | Msa0530480:intron | 30.0% |
| CCATATTAATTCTGCATAGA+TGG | + | chr4_1:4550231-4550250 | None:intergenic | 30.0% | |
| CCATCTATGCAGAATTAATA+TGG | - | chr4_1:4550228-4550247 | Msa0530480:intron | 30.0% | |
| ! | TATTTAAGATGAACAGAGAC+CGG | - | chr4_1:4550435-4550454 | Msa0530480:intron | 30.0% |
| ATGTATTATAAAACGTGGCA+AGG | - | chr4_1:4550798-4550817 | Msa0530480:CDS | 30.0% | |
| TAAAATTGGTTGGATGACTA+AGG | + | chr4_1:4550989-4551008 | None:intergenic | 30.0% | |
| CTTCATATGCAAAATTCCTT+TGG | - | chr4_1:4551133-4551152 | Msa0530480:CDS | 30.0% | |
| ACATGTGATCCGATTTAATT+CGG | + | chr4_1:4551188-4551207 | None:intergenic | 30.0% | |
| !! | GAGGACTCTTTGGAATTATA+AGG | + | chr4_1:4548740-4548759 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGAAGGTCTAACT+TGG | + | chr4_1:4548831-4548850 | None:intergenic | 35.0% |
| TTACTACATGGCACAAGAAA+TGG | + | chr4_1:4548869-4548888 | None:intergenic | 35.0% | |
| CGAAAGAAACAAAGTGAAAG+AGG | - | chr4_1:4548910-4548929 | Msa0530480:intron | 35.0% | |
| !! | AGAAGTAATGGTGGATGTAA+AGG | - | chr4_1:4548971-4548990 | Msa0530480:intron | 35.0% |
| !! | AGAGGGTGGAATTTTAATGA+AGG | - | chr4_1:4549025-4549044 | Msa0530480:intron | 35.0% |
| ! | GCTCTTTTGCTTGGAAATTA+TGG | - | chr4_1:4549115-4549134 | Msa0530480:intron | 35.0% |
| TTTGAAGGAGGTAATGATCA+TGG | - | chr4_1:4549144-4549163 | Msa0530480:intron | 35.0% | |
| AGTTGTGATAAAGAGAAGCA+TGG | - | chr4_1:4549355-4549374 | Msa0530480:intron | 35.0% | |
| GGATCCAAAAGTCTATCAAA+CGG | - | chr4_1:4549380-4549399 | Msa0530480:intron | 35.0% | |
| AAAACTCAAAGTCGCATTGA+AGG | - | chr4_1:4549567-4549586 | Msa0530480:CDS | 35.0% | |
| GTGTCAAATAGTATAGTGGT+TGG | - | chr4_1:4549908-4549927 | Msa0530480:intron | 35.0% | |
| ! | ATGTGGAGAAATGAAGTGTT+AGG | - | chr4_1:4549947-4549966 | Msa0530480:intron | 35.0% |
| ! | TGTGGAGAAATGAAGTGTTA+GGG | - | chr4_1:4549948-4549967 | Msa0530480:intron | 35.0% |
| CTCTATGAGTTTAACTCAGT+TGG | + | chr4_1:4550015-4550034 | None:intergenic | 35.0% | |
| !!! | ATTTTAGCTAATCCTGGTGA+TGG | - | chr4_1:4550194-4550213 | Msa0530480:intron | 35.0% |
| TTCAAAGTGACCCAGATAAT+TGG | - | chr4_1:4550300-4550319 | Msa0530480:intron | 35.0% | |
| ATGTAGCAGAGCTCAATTAT+TGG | - | chr4_1:4550370-4550389 | Msa0530480:intron | 35.0% | |
| TGTAGCAGAGCTCAATTATT+GGG | - | chr4_1:4550371-4550390 | Msa0530480:intron | 35.0% | |
| TTAAAGACGTCGTATATAGG+CGG | - | chr4_1:4550476-4550495 | Msa0530480:intron | 35.0% | |
| AATAATATGCAGCTATGTCC+TGG | - | chr4_1:4551110-4551129 | Msa0530480:CDS | 35.0% | |
| TGAACTTAGAATTGGTGCAG+AGG | + | chr4_1:4548711-4548730 | None:intergenic | 40.0% | |
| AGTATGTTCAAGCTCAAGAG+AGG | + | chr4_1:4548759-4548778 | None:intergenic | 40.0% | |
| TTGAAGGTCTAACTTGGCTA+AGG | + | chr4_1:4548825-4548844 | None:intergenic | 40.0% | |
| CAAAGTGAAAGAGGCTAAGA+TGG | - | chr4_1:4548919-4548938 | Msa0530480:intron | 40.0% | |
| ATGGTGCAAACTTCAGTGAA+GGG | - | chr4_1:4548938-4548957 | Msa0530480:intron | 40.0% | |
| !! | AGTAATGGTGGATGTAAAGG+TGG | - | chr4_1:4548974-4548993 | Msa0530480:intron | 40.0% |
| ! | GGTGTGCTTCTATCATGTTT+TGG | + | chr4_1:4549087-4549106 | None:intergenic | 40.0% |
| !! | CAAGCAAAAGAGCATCACAA+GGG | + | chr4_1:4549108-4549127 | None:intergenic | 40.0% |
| ! | GTGATAAAGAGAAGCATGGT+TGG | - | chr4_1:4549359-4549378 | Msa0530480:intron | 40.0% |
| TCCAAAAGTCTATCAAACGG+AGG | - | chr4_1:4549383-4549402 | Msa0530480:intron | 40.0% | |
| ACTAATGAGAGAGTGATGCA+TGG | - | chr4_1:4549803-4549822 | Msa0530480:intron | 40.0% | |
| ! | TATCTACAAGGGGAAAGCAT+GGG | + | chr4_1:4549840-4549859 | None:intergenic | 40.0% |
| ! | TCTTTGGGGACTATCTACAA+GGG | + | chr4_1:4549851-4549870 | None:intergenic | 40.0% |
| !!! | AGAGCGATTTTAGCTAATCC+TGG | - | chr4_1:4550188-4550207 | Msa0530480:intron | 40.0% |
| GACATAATATGACCATCACC+AGG | + | chr4_1:4550209-4550228 | None:intergenic | 40.0% | |
| TTGGTTGGATGACTAAGGTA+GGG | + | chr4_1:4550984-4551003 | None:intergenic | 40.0% | |
| ATTGGTTGGATGACTAAGGT+AGG | + | chr4_1:4550985-4551004 | None:intergenic | 40.0% | |
| ! | GGAATTTTGCATATGAAGCC+AGG | + | chr4_1:4551131-4551150 | None:intergenic | 40.0% |
| ! | CTTCATTTTCAGCATCCCAA+AGG | + | chr4_1:4551152-4551171 | None:intergenic | 40.0% |
| AAGCTCAAGAGAGGACTCTT+TGG | + | chr4_1:4548750-4548769 | None:intergenic | 45.0% | |
| GATGGTGCAAACTTCAGTGA+AGG | - | chr4_1:4548937-4548956 | Msa0530480:intron | 45.0% | |
| TGCAAACTTCAGTGAAGGGA+GGG | - | chr4_1:4548942-4548961 | Msa0530480:intron | 45.0% | |
| !! | AATGGTGGATGTAAAGGTGG+TGG | - | chr4_1:4548977-4548996 | Msa0530480:intron | 45.0% |
| !! | TCAGATGGTGGAAATGGAAG+AGG | - | chr4_1:4549007-4549026 | Msa0530480:intron | 45.0% |
| !! | CAGATGGTGGAAATGGAAGA+GGG | - | chr4_1:4549008-4549027 | Msa0530480:intron | 45.0% |
| !! | CCAAGCAAAAGAGCATCACA+AGG | + | chr4_1:4549109-4549128 | None:intergenic | 45.0% |
| ! | CCTTGTGATGCTCTTTTGCT+TGG | - | chr4_1:4549106-4549125 | Msa0530480:intron | 45.0% |
| ! | GCCTCCGTTTGATAGACTTT+TGG | + | chr4_1:4549387-4549406 | None:intergenic | 45.0% |
| AATGAGAGAGTGATGCATGG+AGG | - | chr4_1:4549806-4549825 | Msa0530480:intron | 45.0% | |
| ATGAGAGAGTGATGCATGGA+GGG | - | chr4_1:4549807-4549826 | Msa0530480:intron | 45.0% | |
| CTATCTACAAGGGGAAAGCA+TGG | + | chr4_1:4549841-4549860 | None:intergenic | 45.0% | |
| ! | CTTTGGGGACTATCTACAAG+GGG | + | chr4_1:4549850-4549869 | None:intergenic | 45.0% |
| ! | CTCTTTGGGGACTATCTACA+AGG | + | chr4_1:4549852-4549871 | None:intergenic | 45.0% |
| TGGGAAACAGAGAAGAATGC+TGG | - | chr4_1:4550248-4550267 | Msa0530480:intron | 45.0% | |
| !! | TAAGGTGTTGTGGGACAATG+AGG | + | chr4_1:4550957-4550976 | None:intergenic | 45.0% |
| TGGTTGGATGACTAAGGTAG+GGG | + | chr4_1:4550983-4551002 | None:intergenic | 45.0% | |
| ! | CAATGAAAGGGTCTTGTCTC+CGG | - | chr4_1:4551047-4551066 | Msa0530480:CDS | 45.0% |
| !! | TATCATATAAATATTTATAT+AGG | - | chr4_1:4550621-4550640 | Msa0530480:intron | 5.0% |
| !! | ATATATTATTACATTTATAT+AGG | - | chr4_1:4550709-4550728 | Msa0530480:CDS | 5.0% |
| GGTCTAACTTGGCTAAGGTG+TGG | + | chr4_1:4548820-4548839 | None:intergenic | 50.0% | |
| GTGCAAACTTCAGTGAAGGG+AGG | - | chr4_1:4548941-4548960 | Msa0530480:intron | 50.0% | |
| GCAAACTTCAGTGAAGGGAG+GGG | - | chr4_1:4548943-4548962 | Msa0530480:intron | 50.0% | |
| CAAACTTCAGTGAAGGGAGG+GGG | - | chr4_1:4548944-4548963 | Msa0530480:intron | 50.0% | |
| !! | GGATGTAAAGGTGGTGGAAG+AGG | - | chr4_1:4548983-4549002 | Msa0530480:intron | 50.0% |
| !! | AGAGGCTCAGATGGTGGAAA+TGG | - | chr4_1:4549001-4549020 | Msa0530480:intron | 50.0% |
| ! | ATGGTGGAAATGGAAGAGGG+TGG | - | chr4_1:4549011-4549030 | Msa0530480:intron | 50.0% |
| TGAGAGAGTGATGCATGGAG+GGG | - | chr4_1:4549808-4549827 | Msa0530480:intron | 50.0% | |
| !! | TAGGGGGGTTAAGGTGTTGT+GGG | + | chr4_1:4550966-4550985 | None:intergenic | 50.0% |
| TGACTAAGGTAGGGGGGTTA+AGG | + | chr4_1:4550975-4550994 | None:intergenic | 50.0% | |
| GTTGGATGACTAAGGTAGGG+GGG | + | chr4_1:4550981-4551000 | None:intergenic | 50.0% | |
| GGTTGGATGACTAAGGTAGG+GGG | + | chr4_1:4550982-4551001 | None:intergenic | 50.0% | |
| CGGAGACAAGACCCTTTCAT+TGG | + | chr4_1:4551049-4551068 | None:intergenic | 50.0% | |
| ! | GGAGGGGGTGTGAGAAGTAA+TGG | - | chr4_1:4548959-4548978 | Msa0530480:intron | 55.0% |
| ! | GGGGGTGTGAGAAGTAATGG+TGG | - | chr4_1:4548962-4548981 | Msa0530480:intron | 55.0% |
| ! | CAAGGGGAAAGCATGGGCTT+TGG | + | chr4_1:4549834-4549853 | None:intergenic | 55.0% |
| !! | GTAGGGGGGTTAAGGTGTTG+TGG | + | chr4_1:4550967-4550986 | None:intergenic | 55.0% |
| !! | GGTGGTGGAAGAGGCTCAGA+TGG | - | chr4_1:4548992-4549011 | Msa0530480:intron | 60.0% |
| GGTGGAAGAGGCTCAGATGG+TGG | - | chr4_1:4548995-4549014 | Msa0530480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4548646 | 4551209 | 4548646 | ID=Msa0530480;Name=Msa0530480 |
| chr4_1 | mRNA | 4548646 | 4551209 | 4548646 | ID=Msa0530480-mRNA-1;Parent=Msa0530480;Name=Msa0530480-mRNA-1;_AED=0.31;_eAED=0.31;_QI=46|1|0.66|1|1|1|3|0|240 |
| chr4_1 | exon | 4548646 | 4548733 | 4548646 | ID=Msa0530480-mRNA-1:exon:1375;Parent=Msa0530480-mRNA-1 |
| chr4_1 | exon | 4549534 | 4549706 | 4549534 | ID=Msa0530480-mRNA-1:exon:1374;Parent=Msa0530480-mRNA-1 |
| chr4_1 | exon | 4550702 | 4551209 | 4550702 | ID=Msa0530480-mRNA-1:exon:1373;Parent=Msa0530480-mRNA-1 |
| chr4_1 | five_prime_UTR | 4551164 | 4551209 | 4551164 | ID=Msa0530480-mRNA-1:five_prime_utr;Parent=Msa0530480-mRNA-1 |
| chr4_1 | CDS | 4550702 | 4551163 | 4550702 | ID=Msa0530480-mRNA-1:cds;Parent=Msa0530480-mRNA-1 |
| chr4_1 | CDS | 4549534 | 4549706 | 4549534 | ID=Msa0530480-mRNA-1:cds;Parent=Msa0530480-mRNA-1 |
| chr4_1 | CDS | 4548646 | 4548733 | 4548646 | ID=Msa0530480-mRNA-1:cds;Parent=Msa0530480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
