AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0665210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665210 MtrunA17_Chr4g0003311 94.839 155 5 1 1 155 1 152 8.75e-103 296
Msa0665210 MtrunA17_Chr2g0333081 48.855 262 118 5 1 248 1 260 5.42e-61 193
Msa0665210 MtrunA17_Chr4g0063891 39.615 260 118 6 1 223 1 258 2.11e-48 161
Msa0665210 MtrunA17_Chr5g0411051 53.922 102 47 0 124 225 119 220 4.46e-35 125
Msa0665210 MtrunA17_Chr4g0003301 80.000 65 13 0 154 218 6 70 1.85e-34 118
Msa0665210 MtrunA17_Chr7g0262541 42.400 125 69 1 115 239 228 349 2.05e-30 116
Msa0665210 MtrunA17_Chr7g0262061 44.262 122 64 2 110 230 211 329 4.53e-30 115
Msa0665210 MtrunA17_Chr1g0186111 35.948 153 90 2 101 246 96 247 5.36e-24 99.0
Msa0665210 MtrunA17_Chr1g0186111 40.000 110 65 1 121 229 266 375 8.63e-19 84.3
Msa0665210 MtrunA17_Chr3g0104511 36.538 104 66 0 126 229 398 501 3.54e-18 83.2
Msa0665210 MtrunA17_Chr5g0436741 33.028 109 72 1 118 225 288 396 6.80e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665210 AT5G20190.1 32.308 260 135 5 1 225 1 254 4.18e-38 135
Msa0665210 AT4G32340.1 59.000 100 40 1 127 225 110 209 4.04e-37 131
Msa0665210 AT4G17940.1 52.941 102 48 0 124 225 147 248 4.66e-34 124
Msa0665210 AT1G04530.1 42.105 95 54 1 130 224 124 217 6.91e-20 87.0
Msa0665210 AT2G29670.1 36.667 120 65 1 123 231 416 535 8.55e-19 85.5
Msa0665210 AT2G29670.2 36.667 120 65 1 123 231 416 535 8.55e-19 85.5
Msa0665210 AT1G07280.3 35.577 104 67 0 126 229 434 537 4.01e-18 83.6
Msa0665210 AT1G07280.1 35.577 104 67 0 126 229 434 537 4.01e-18 83.6
Msa0665210 AT1G07280.2 35.577 104 67 0 126 229 434 537 4.01e-18 83.6
Msa0665210 AT3G47080.1 34.615 104 68 0 126 229 399 502 7.54e-14 70.9

Find 48 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTAACTTGGCTAAATTT+TGG 0.170765 4_4:+4606324 None:intergenic
CTTGAAAATGATATTGTTCT+AGG 0.177991 4_4:+4606353 None:intergenic
GCATGTGATCCGATTTAATT+TGG 0.178454 4_4:+4604197 None:intergenic
TATATATCATACCAATTATC+TGG 0.209326 4_4:+4604923 None:intergenic
CCATCTATGCAGAATTAATA+TGG 0.211193 4_4:-4605006 Msa0665210:CDS
CCATATTAATTCTGCATAGA+TGG 0.249294 4_4:+4605006 None:intergenic
GTATCTAGAAAGAGCCATTT+TGG 0.251473 4_4:-4605056 Msa0665210:CDS
GAGGACTCTTTGGAATTATA+AGG 0.297415 4_4:+4606404 None:intergenic
CTTCATATGCAAAATTCCTT+TGG 0.300863 4_4:-4604242 Msa0665210:CDS
TTCAAAGTGACCCAGATAAT+TGG 0.327872 4_4:-4604934 Msa0665210:intron
TAGCTCAAGAGAGGACTCTT+TGG 0.349079 4_4:+4606394 None:intergenic
AGGATTTAAGCTATTCTCAT+TGG 0.356265 4_4:+4604117 None:intergenic
ATCACCAGGATTAGCCAAAA+TGG 0.357650 4_4:+4605042 None:intergenic
TTCATATGCAAAATTCCTTT+GGG 0.366011 4_4:-4604241 Msa0665210:CDS
TTACTACATGGCACAAGAAA+TGG 0.383185 4_4:+4606275 None:intergenic
GGTAACAATGAACTTAGAAT+TGG 0.408424 4_4:+4606425 None:intergenic
AGAGGCTCAGATGGTGGAAA+TGG 0.433784 4_4:-4606140 Msa0665210:CDS
GGTGTGCTTCAATCATGTTT+TGG 0.439388 4_4:+4606057 None:intergenic
GAAATAATCATGGTAGAGAT+AGG 0.441347 4_4:-4606094 Msa0665210:CDS
GCAAACTTCAGTGATGGGTG+GGG 0.443619 4_4:-4606198 Msa0665210:CDS
AAGAAGATACCAAATTAAAT+CGG 0.450419 4_4:-4604206 Msa0665210:CDS
TTTAATGAAGGAAATAATCA+TGG 0.466976 4_4:-4606104 Msa0665210:CDS
CAAAGTGAAAGAGGCTAAGA+TGG 0.477457 4_4:-4606222 Msa0665210:CDS
AATAATATGCAGCTATGTCC+TGG 0.477958 4_4:-4604265 Msa0665210:intron
CGAAAGAAACAAAGTGAAAG+AGG 0.478819 4_4:-4606231 Msa0665210:CDS
CAAACTTCAGTGATGGGTGG+GGG 0.480755 4_4:-4606197 Msa0665210:CDS
CATCTATGCAGAATTAATAT+GGG 0.481359 4_4:-4605005 Msa0665210:CDS
GCAAAGTGAAACAAAGATCA+AGG 0.499635 4_4:+4606485 None:intergenic
GGATGTAAAGGTTGTGGAAG+AGG 0.521111 4_4:-4606158 Msa0665210:CDS
TGCAAACTTCAGTGATGGGT+GGG 0.525353 4_4:-4606199 Msa0665210:CDS
TCAGATGGTGGAAATGGAAG+AGG 0.527871 4_4:-4606134 Msa0665210:CDS
AGAAGTAATGGTGGATGTAA+AGG 0.545315 4_4:-4606170 Msa0665210:CDS
AATGGTGGATGTAAAGGTTG+TGG 0.550134 4_4:-4606164 Msa0665210:CDS
GGTTGTGGAAGAGGCTCAGA+TGG 0.550677 4_4:-4606149 Msa0665210:CDS
ATATATCATACCAATTATCT+GGG 0.554667 4_4:+4604924 None:intergenic
GTGCAAACTTCAGTGATGGG+TGG 0.555928 4_4:-4606200 Msa0665210:CDS
TGGGAAACAGAGAAGAATGC+TGG 0.574769 4_4:-4604986 Msa0665210:CDS
GTACTTAGAACATTACTACA+TGG 0.576469 4_4:+4606263 None:intergenic
CCAAGCAAAAGAGCATCACA+AGG 0.607278 4_4:+4606035 None:intergenic
TGTGGAAGAGGCTCAGATGG+TGG 0.608176 4_4:-4606146 Msa0665210:CDS
GATGGTGCAAACTTCAGTGA+TGG 0.608566 4_4:-4606204 Msa0665210:CDS
CAGATGGTGGAAATGGAAGA+GGG 0.618945 4_4:-4606133 Msa0665210:CDS
AGTATGTTCTAGCTCAAGAG+AGG 0.631782 4_4:+4606385 None:intergenic
ATGGTGGAAATGGAAGAGGG+TGG 0.650938 4_4:-4606130 Msa0665210:CDS
ATGGTGCAAACTTCAGTGAT+GGG 0.654906 4_4:-4606203 Msa0665210:CDS
TGAACTTAGAATTGGTGCAG+AGG 0.666303 4_4:+4606433 None:intergenic
GACATAATATGACCATCACC+AGG 0.669196 4_4:+4605028 None:intergenic
CAAGCAAAAGAGCATCACAA+GGG 0.724452 4_4:+4606036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAATAAAACTAAAAA+TGG + chr4_4:4604751-4604770 None:intergenic 10.0%
!!! TATTTTTAAAAACATAAACA+TGG - chr4_4:4604822-4604841 Msa0665210:intron 10.0%
!!! ATTATACAACTTTTTTTTTA+AGG + chr4_4:4604955-4604974 None:intergenic 10.0%
!! ATATATTAACACAAAAAATA+TGG + chr4_4:4605023-4605042 None:intergenic 10.0%
!! TTAAAAAAAAAGTTATTAAG+CGG + chr4_4:4605098-4605117 None:intergenic 10.0%
!! AGATATTAATATAAATCTTA+TGG + chr4_4:4605913-4605932 None:intergenic 10.0%
!! TAATGTTAATAAATTAACAT+TGG + chr4_4:4606093-4606112 None:intergenic 10.0%
!! TTTCAAAATAAAACTAAAAA+TGG + chr4_4:4604751-4604770 None:intergenic 10.0%
!!! TATTTTTAAAAACATAAACA+TGG - chr4_4:4604822-4604841 Msa0665210:intron 10.0%
!!! ATTATACAACTTTTTTTTTA+AGG + chr4_4:4604955-4604974 None:intergenic 10.0%
!! ATATATTAACACAAAAAATA+TGG + chr4_4:4605023-4605042 None:intergenic 10.0%
!! TTAAAAAAAAAGTTATTAAG+CGG + chr4_4:4605098-4605117 None:intergenic 10.0%
!! AGATATTAATATAAATCTTA+TGG + chr4_4:4605913-4605932 None:intergenic 10.0%
!! TAATGTTAATAAATTAACAT+TGG + chr4_4:4606093-4606112 None:intergenic 10.0%
!!! GATATATTAATTTTTTTGCA+TGG - chr4_4:4604641-4604660 Msa0665210:intron 15.0%
!! AGTTGTATAATATATTAACA+CGG - chr4_4:4604964-4604983 Msa0665210:CDS 15.0%
!!! ATATATTGAGTATCTTTTTA+AGG - chr4_4:4605719-4605738 Msa0665210:intron 15.0%
!!! CTATATAAATGTATTGTTTT+TGG + chr4_4:4605954-4605973 None:intergenic 15.0%
!! TGATTAAGGTAATATAAAAT+TGG + chr4_4:4606189-4606208 None:intergenic 15.0%
!!! GATATATTAATTTTTTTGCA+TGG - chr4_4:4604641-4604660 Msa0665210:intron 15.0%
!! AGTTGTATAATATATTAACA+CGG - chr4_4:4604964-4604983 Msa0665210:CDS 15.0%
!!! ATATATTGAGTATCTTTTTA+AGG - chr4_4:4605719-4605738 Msa0665210:intron 15.0%
!!! CTATATAAATGTATTGTTTT+TGG + chr4_4:4605954-4605973 None:intergenic 15.0%
!! TGATTAAGGTAATATAAAAT+TGG + chr4_4:4606189-4606208 None:intergenic 15.0%
!! TTTAATGAAGGAAATAATCA+TGG - chr4_4:4604507-4604526 Msa0665210:intron 20.0%
!!! AAATTATGGAAAGTTTTTGA+AGG - chr4_4:4604599-4604618 Msa0665210:intron 20.0%
!! GTTGTATAATATATTAACAC+GGG - chr4_4:4604965-4604984 Msa0665210:CDS 20.0%
!!! GCGCTTAATAAATTTTTATT+AGG - chr4_4:4605118-4605137 Msa0665210:intron 20.0%
!! TTAATCTTTATGTGTCTTAA+TGG + chr4_4:4605234-4605253 None:intergenic 20.0%
!!! TTTCTCTCTTTGTTTTAATA+TGG - chr4_4:4605468-4605487 Msa0665210:intron 20.0%
!! ATATATCATACCAATTATCT+GGG + chr4_4:4605690-4605709 None:intergenic 20.0%
!! TATATATCATACCAATTATC+TGG + chr4_4:4605691-4605710 None:intergenic 20.0%
!!! AATCTTATGGTGTTTATTTT+GGG + chr4_4:4605900-4605919 None:intergenic 20.0%
!!! AAATCTTATGGTGTTTATTT+TGG + chr4_4:4605901-4605920 None:intergenic 20.0%
!!! ATTGTTTTTGGTGAATTTTT+CGG + chr4_4:4605942-4605961 None:intergenic 20.0%
!! AAATTTGAAGAGTTAAAGTT+TGG - chr4_4:4606038-4606057 Msa0665210:CDS 20.0%
!! TATTAACATTATCTTAAGAG+TGG - chr4_4:4606102-4606121 Msa0665210:CDS 20.0%
!! ATTAACATTATCTTAAGAGT+GGG - chr4_4:4606103-4606122 Msa0665210:CDS 20.0%
!! TAAGGTAATATAAAATTGGT+TGG + chr4_4:4606185-4606204 None:intergenic 20.0%
!!! TTTTTATTTCTGTTTACCAA+TGG - chr4_4:4606263-4606282 Msa0665210:CDS 20.0%
!! TATTATCAACAAGATAAATC+CGG + chr4_4:4606302-4606321 None:intergenic 20.0%
!! AAGAAGATACCAAATTAAAT+CGG - chr4_4:4606405-4606424 Msa0665210:CDS 20.0%
!!! TATTTTTCATTTGTCGAATA+TGG + chr4_4:4606462-4606481 None:intergenic 20.0%
!! TTTAATGAAGGAAATAATCA+TGG - chr4_4:4604507-4604526 Msa0665210:intron 20.0%
!!! AAATTATGGAAAGTTTTTGA+AGG - chr4_4:4604599-4604618 Msa0665210:intron 20.0%
!! GTTGTATAATATATTAACAC+GGG - chr4_4:4604965-4604984 Msa0665210:CDS 20.0%
!!! GCGCTTAATAAATTTTTATT+AGG - chr4_4:4605118-4605137 Msa0665210:intron 20.0%
!! TTAATCTTTATGTGTCTTAA+TGG + chr4_4:4605234-4605253 None:intergenic 20.0%
!!! TTTCTCTCTTTGTTTTAATA+TGG - chr4_4:4605468-4605487 Msa0665210:intron 20.0%
!! ATATATCATACCAATTATCT+GGG + chr4_4:4605690-4605709 None:intergenic 20.0%
!! TATATATCATACCAATTATC+TGG + chr4_4:4605691-4605710 None:intergenic 20.0%
!!! AATCTTATGGTGTTTATTTT+GGG + chr4_4:4605900-4605919 None:intergenic 20.0%
!!! AAATCTTATGGTGTTTATTT+TGG + chr4_4:4605901-4605920 None:intergenic 20.0%
!!! ATTGTTTTTGGTGAATTTTT+CGG + chr4_4:4605942-4605961 None:intergenic 20.0%
!! AAATTTGAAGAGTTAAAGTT+TGG - chr4_4:4606038-4606057 Msa0665210:CDS 20.0%
!! TATTAACATTATCTTAAGAG+TGG - chr4_4:4606102-4606121 Msa0665210:CDS 20.0%
!! ATTAACATTATCTTAAGAGT+GGG - chr4_4:4606103-4606122 Msa0665210:CDS 20.0%
!! TAAGGTAATATAAAATTGGT+TGG + chr4_4:4606185-4606204 None:intergenic 20.0%
!!! TTTTTATTTCTGTTTACCAA+TGG - chr4_4:4606263-4606282 Msa0665210:CDS 20.0%
!! TATTATCAACAAGATAAATC+CGG + chr4_4:4606302-4606321 None:intergenic 20.0%
!! AAGAAGATACCAAATTAAAT+CGG - chr4_4:4606405-4606424 Msa0665210:CDS 20.0%
!!! TATTTTTCATTTGTCGAATA+TGG + chr4_4:4606462-4606481 None:intergenic 20.0%
! CTTGAAAATGATATTGTTCT+AGG + chr4_4:4604261-4604280 None:intergenic 25.0%
! AAACATGGATGTTTATCAAA+TGG - chr4_4:4604837-4604856 Msa0665210:intron 25.0%
! GCTTGTTCAAAAAATTAACA+CGG - chr4_4:4605052-4605071 Msa0665210:CDS 25.0%
! CTTGTTCAAAAAATTAACAC+GGG - chr4_4:4605053-4605072 Msa0665210:CDS 25.0%
!! CTGATTTTCATTTTGCAAAT+AGG - chr4_4:4605504-4605523 Msa0665210:intron 25.0%
! CATCTATGCAGAATTAATAT+GGG - chr4_4:4605606-4605625 Msa0665210:intron 25.0%
!! GTTTGTAGTTTTTGAATCAT+CGG + chr4_4:4605836-4605855 None:intergenic 25.0%
! CTAAAAGCAATGTATATAGA+TGG - chr4_4:4605855-4605874 Msa0665210:intron 25.0%
! TTAACATTATCTTAAGAGTG+GGG - chr4_4:4606104-4606123 Msa0665210:CDS 25.0%
! TAAAATTGGTTGGATAACTA+AGG + chr4_4:4606175-4606194 None:intergenic 25.0%
! ATATTACCTTAATCACTTGA+TGG - chr4_4:4606194-4606213 Msa0665210:CDS 25.0%
! TTCATATGCAAAATTCCTTT+GGG - chr4_4:4606370-4606389 Msa0665210:CDS 25.0%
! CTTGAAAATGATATTGTTCT+AGG + chr4_4:4604261-4604280 None:intergenic 25.0%
! AAACATGGATGTTTATCAAA+TGG - chr4_4:4604837-4604856 Msa0665210:intron 25.0%
! GCTTGTTCAAAAAATTAACA+CGG - chr4_4:4605052-4605071 Msa0665210:CDS 25.0%
! CTTGTTCAAAAAATTAACAC+GGG - chr4_4:4605053-4605072 Msa0665210:CDS 25.0%
!! CTGATTTTCATTTTGCAAAT+AGG - chr4_4:4605504-4605523 Msa0665210:intron 25.0%
! CATCTATGCAGAATTAATAT+GGG - chr4_4:4605606-4605625 Msa0665210:intron 25.0%
!! GTTTGTAGTTTTTGAATCAT+CGG + chr4_4:4605836-4605855 None:intergenic 25.0%
! CTAAAAGCAATGTATATAGA+TGG - chr4_4:4605855-4605874 Msa0665210:intron 25.0%
! TTAACATTATCTTAAGAGTG+GGG - chr4_4:4606104-4606123 Msa0665210:CDS 25.0%
! TAAAATTGGTTGGATAACTA+AGG + chr4_4:4606175-4606194 None:intergenic 25.0%
! ATATTACCTTAATCACTTGA+TGG - chr4_4:4606194-4606213 Msa0665210:CDS 25.0%
! TTCATATGCAAAATTCCTTT+GGG - chr4_4:4606370-4606389 Msa0665210:CDS 25.0%
GGTAACAATGAACTTAGAAT+TGG + chr4_4:4604189-4604208 None:intergenic 30.0%
!! TAGTACTTGATGAGTTTTGA+AGG + chr4_4:4604311-4604330 None:intergenic 30.0%
GTACTTAGAACATTACTACA+TGG + chr4_4:4604351-4604370 None:intergenic 30.0%
GAAATAATCATGGTAGAGAT+AGG - chr4_4:4604517-4604536 Msa0665210:intron 30.0%
!! TTATGGAAAGTTTTTGAAGG+AGG - chr4_4:4604602-4604621 Msa0665210:intron 30.0%
TTTGAAGGAGGTAATAATCA+TGG - chr4_4:4604614-4604633 Msa0665210:intron 30.0%
! GTAATTTTCTAACAGTGAGA+TGG - chr4_4:4604782-4604801 Msa0665210:intron 30.0%
! ATAATTCAGCAGAAGAGTTT+TGG - chr4_4:4605367-4605386 Msa0665210:intron 30.0%
!!! CTCTCTTTGTTTTAATATGG+AGG - chr4_4:4605471-4605490 Msa0665210:intron 30.0%
! TCATTTTGCAAATAGGTTTG+TGG - chr4_4:4605511-4605530 Msa0665210:intron 30.0%
CCATATTAATTCTGCATAGA+TGG + chr4_4:4605608-4605627 None:intergenic 30.0%
CCATCTATGCAGAATTAATA+TGG - chr4_4:4605605-4605624 Msa0665210:intron 30.0%
TACAAACCATCAAGTGATTA+AGG + chr4_4:4606203-4606222 None:intergenic 30.0%
TGGCTAGAGAATTAATTACT+TGG + chr4_4:4606227-4606246 None:intergenic 30.0%
! TATTTCTGTTTACCAATGGA+AGG - chr4_4:4606267-4606286 Msa0665210:CDS 30.0%
ATTTCTGTTTACCAATGGAA+GGG - chr4_4:4606268-4606287 Msa0665210:CDS 30.0%
CTTCATATGCAAAATTCCTT+TGG - chr4_4:4606369-4606388 Msa0665210:CDS 30.0%
AGGATTTAAGCTATTCTCAT+TGG + chr4_4:4606497-4606516 None:intergenic 30.0%
GGTAACAATGAACTTAGAAT+TGG + chr4_4:4604189-4604208 None:intergenic 30.0%
!! TAGTACTTGATGAGTTTTGA+AGG + chr4_4:4604311-4604330 None:intergenic 30.0%
GTACTTAGAACATTACTACA+TGG + chr4_4:4604351-4604370 None:intergenic 30.0%
GAAATAATCATGGTAGAGAT+AGG - chr4_4:4604517-4604536 Msa0665210:intron 30.0%
!! TTATGGAAAGTTTTTGAAGG+AGG - chr4_4:4604602-4604621 Msa0665210:intron 30.0%
TTTGAAGGAGGTAATAATCA+TGG - chr4_4:4604614-4604633 Msa0665210:intron 30.0%
! GTAATTTTCTAACAGTGAGA+TGG - chr4_4:4604782-4604801 Msa0665210:intron 30.0%
! ATAATTCAGCAGAAGAGTTT+TGG - chr4_4:4605367-4605386 Msa0665210:intron 30.0%
!!! CTCTCTTTGTTTTAATATGG+AGG - chr4_4:4605471-4605490 Msa0665210:intron 30.0%
! TCATTTTGCAAATAGGTTTG+TGG - chr4_4:4605511-4605530 Msa0665210:intron 30.0%
CCATATTAATTCTGCATAGA+TGG + chr4_4:4605608-4605627 None:intergenic 30.0%
CCATCTATGCAGAATTAATA+TGG - chr4_4:4605605-4605624 Msa0665210:intron 30.0%
TACAAACCATCAAGTGATTA+AGG + chr4_4:4606203-4606222 None:intergenic 30.0%
TGGCTAGAGAATTAATTACT+TGG + chr4_4:4606227-4606246 None:intergenic 30.0%
! TATTTCTGTTTACCAATGGA+AGG - chr4_4:4606267-4606286 Msa0665210:CDS 30.0%
ATTTCTGTTTACCAATGGAA+GGG - chr4_4:4606268-4606287 Msa0665210:CDS 30.0%
CTTCATATGCAAAATTCCTT+TGG - chr4_4:4606369-4606388 Msa0665210:CDS 30.0%
AGGATTTAAGCTATTCTCAT+TGG + chr4_4:4606497-4606516 None:intergenic 30.0%
GCAAAGTGAAACAAAGATCA+AGG + chr4_4:4604129-4604148 None:intergenic 35.0%
!! GAGGACTCTTTGGAATTATA+AGG + chr4_4:4604210-4604229 None:intergenic 35.0%
! GGTCTAACTTGGCTAAATTT+TGG + chr4_4:4604290-4604309 None:intergenic 35.0%
!!! TGAGTTTTGAAGGTCTAACT+TGG + chr4_4:4604301-4604320 None:intergenic 35.0%
TTACTACATGGCACAAGAAA+TGG + chr4_4:4604339-4604358 None:intergenic 35.0%
CGAAAGAAACAAAGTGAAAG+AGG - chr4_4:4604380-4604399 Msa0665210:intron 35.0%
!! AGAAGTAATGGTGGATGTAA+AGG - chr4_4:4604441-4604460 Msa0665210:intron 35.0%
!! AGAGGGTGGAATTTTAATGA+AGG - chr4_4:4604495-4604514 Msa0665210:intron 35.0%
! GCTCTTTTGCTTGGAAATTA+TGG - chr4_4:4604585-4604604 Msa0665210:intron 35.0%
CATGGATGTTTATCAAATGG+AGG - chr4_4:4604840-4604859 Msa0665210:intron 35.0%
AAAACTCAATGTCACGTTGA+AGG - chr4_4:4605154-4605173 Msa0665210:intron 35.0%
! GTATCTAGAAAGAGCCATTT+TGG - chr4_4:4605555-4605574 Msa0665210:intron 35.0%
TTCAAAGTGACCCAGATAAT+TGG - chr4_4:4605677-4605696 Msa0665210:intron 35.0%
ATTGGTTGGATAACTAAGGT+GGG + chr4_4:4606171-4606190 None:intergenic 35.0%
AATTGGTTGGATAACTAAGG+TGG + chr4_4:4606172-4606191 None:intergenic 35.0%
AATAATATGCAGCTATGTCC+TGG - chr4_4:4606346-4606365 Msa0665210:CDS 35.0%
GCATGTGATCCGATTTAATT+TGG + chr4_4:4606417-4606436 None:intergenic 35.0%
GCAAAGTGAAACAAAGATCA+AGG + chr4_4:4604129-4604148 None:intergenic 35.0%
!! GAGGACTCTTTGGAATTATA+AGG + chr4_4:4604210-4604229 None:intergenic 35.0%
! GGTCTAACTTGGCTAAATTT+TGG + chr4_4:4604290-4604309 None:intergenic 35.0%
!!! TGAGTTTTGAAGGTCTAACT+TGG + chr4_4:4604301-4604320 None:intergenic 35.0%
TTACTACATGGCACAAGAAA+TGG + chr4_4:4604339-4604358 None:intergenic 35.0%
CGAAAGAAACAAAGTGAAAG+AGG - chr4_4:4604380-4604399 Msa0665210:intron 35.0%
!! AGAAGTAATGGTGGATGTAA+AGG - chr4_4:4604441-4604460 Msa0665210:intron 35.0%
!! AGAGGGTGGAATTTTAATGA+AGG - chr4_4:4604495-4604514 Msa0665210:intron 35.0%
! GCTCTTTTGCTTGGAAATTA+TGG - chr4_4:4604585-4604604 Msa0665210:intron 35.0%
CATGGATGTTTATCAAATGG+AGG - chr4_4:4604840-4604859 Msa0665210:intron 35.0%
AAAACTCAATGTCACGTTGA+AGG - chr4_4:4605154-4605173 Msa0665210:intron 35.0%
! GTATCTAGAAAGAGCCATTT+TGG - chr4_4:4605555-4605574 Msa0665210:intron 35.0%
TTCAAAGTGACCCAGATAAT+TGG - chr4_4:4605677-4605696 Msa0665210:intron 35.0%
ATTGGTTGGATAACTAAGGT+GGG + chr4_4:4606171-4606190 None:intergenic 35.0%
AATTGGTTGGATAACTAAGG+TGG + chr4_4:4606172-4606191 None:intergenic 35.0%
AATAATATGCAGCTATGTCC+TGG - chr4_4:4606346-4606365 Msa0665210:CDS 35.0%
GCATGTGATCCGATTTAATT+TGG + chr4_4:4606417-4606436 None:intergenic 35.0%
TGAACTTAGAATTGGTGCAG+AGG + chr4_4:4604181-4604200 None:intergenic 40.0%
!! AGTATGTTCTAGCTCAAGAG+AGG + chr4_4:4604229-4604248 None:intergenic 40.0%
CAAAGTGAAAGAGGCTAAGA+TGG - chr4_4:4604389-4604408 Msa0665210:intron 40.0%
ATGGTGCAAACTTCAGTGAT+GGG - chr4_4:4604408-4604427 Msa0665210:intron 40.0%
!! AATGGTGGATGTAAAGGTTG+TGG - chr4_4:4604447-4604466 Msa0665210:intron 40.0%
! GGTGTGCTTCAATCATGTTT+TGG + chr4_4:4604557-4604576 None:intergenic 40.0%
!! CAAGCAAAAGAGCATCACAA+GGG + chr4_4:4604578-4604597 None:intergenic 40.0%
!! ATCACCAGGATTAGCCAAAA+TGG + chr4_4:4605572-4605591 None:intergenic 40.0%
!!! ATTTTGGCTAATCCTGGTGA+TGG - chr4_4:4605571-4605590 Msa0665210:intron 40.0%
GACATAATATGACCATCACC+AGG + chr4_4:4605586-4605605 None:intergenic 40.0%
GGTCTCTATTCGTCTTAAGT+AGG + chr4_4:4605815-4605834 None:intergenic 40.0%
TTGGTTGGATAACTAAGGTG+GGG + chr4_4:4606170-4606189 None:intergenic 40.0%
! GGAATTTTGCATATGAAGCC+AGG + chr4_4:4606367-4606386 None:intergenic 40.0%
! CTTCATTTTCAGCATCCCAA+AGG + chr4_4:4606388-4606407 None:intergenic 40.0%
TGAACTTAGAATTGGTGCAG+AGG + chr4_4:4604181-4604200 None:intergenic 40.0%
!! AGTATGTTCTAGCTCAAGAG+AGG + chr4_4:4604229-4604248 None:intergenic 40.0%
CAAAGTGAAAGAGGCTAAGA+TGG - chr4_4:4604389-4604408 Msa0665210:intron 40.0%
ATGGTGCAAACTTCAGTGAT+GGG - chr4_4:4604408-4604427 Msa0665210:intron 40.0%
!! AATGGTGGATGTAAAGGTTG+TGG - chr4_4:4604447-4604466 Msa0665210:intron 40.0%
! GGTGTGCTTCAATCATGTTT+TGG + chr4_4:4604557-4604576 None:intergenic 40.0%
!! CAAGCAAAAGAGCATCACAA+GGG + chr4_4:4604578-4604597 None:intergenic 40.0%
!! ATCACCAGGATTAGCCAAAA+TGG + chr4_4:4605572-4605591 None:intergenic 40.0%
!!! ATTTTGGCTAATCCTGGTGA+TGG - chr4_4:4605571-4605590 Msa0665210:intron 40.0%
GACATAATATGACCATCACC+AGG + chr4_4:4605586-4605605 None:intergenic 40.0%
GGTCTCTATTCGTCTTAAGT+AGG + chr4_4:4605815-4605834 None:intergenic 40.0%
TTGGTTGGATAACTAAGGTG+GGG + chr4_4:4606170-4606189 None:intergenic 40.0%
! GGAATTTTGCATATGAAGCC+AGG + chr4_4:4606367-4606386 None:intergenic 40.0%
! CTTCATTTTCAGCATCCCAA+AGG + chr4_4:4606388-4606407 None:intergenic 40.0%
TAGCTCAAGAGAGGACTCTT+TGG + chr4_4:4604220-4604239 None:intergenic 45.0%
GATGGTGCAAACTTCAGTGA+TGG - chr4_4:4604407-4604426 Msa0665210:intron 45.0%
!! TGCAAACTTCAGTGATGGGT+GGG - chr4_4:4604412-4604431 Msa0665210:intron 45.0%
GGATGTAAAGGTTGTGGAAG+AGG - chr4_4:4604453-4604472 Msa0665210:intron 45.0%
!! TCAGATGGTGGAAATGGAAG+AGG - chr4_4:4604477-4604496 Msa0665210:intron 45.0%
!! CAGATGGTGGAAATGGAAGA+GGG - chr4_4:4604478-4604497 Msa0665210:intron 45.0%
!! CCAAGCAAAAGAGCATCACA+AGG + chr4_4:4604579-4604598 None:intergenic 45.0%
! CCTTGTGATGCTCTTTTGCT+TGG - chr4_4:4604576-4604595 Msa0665210:intron 45.0%
!!! AGAGCCATTTTGGCTAATCC+TGG - chr4_4:4605565-4605584 Msa0665210:intron 45.0%
TGGGAAACAGAGAAGAATGC+TGG - chr4_4:4605625-4605644 Msa0665210:intron 45.0%
! TAAGGTGTTAAGGGACAGTG+AGG + chr4_4:4606143-4606162 None:intergenic 45.0%
TGGTTGGATAACTAAGGTGG+GGG + chr4_4:4606169-4606188 None:intergenic 45.0%
!! CAATGGAAGGGTTTTGTCTC+CGG - chr4_4:4606280-4606299 Msa0665210:CDS 45.0%
TAGCTCAAGAGAGGACTCTT+TGG + chr4_4:4604220-4604239 None:intergenic 45.0%
GATGGTGCAAACTTCAGTGA+TGG - chr4_4:4604407-4604426 Msa0665210:intron 45.0%
!! TGCAAACTTCAGTGATGGGT+GGG - chr4_4:4604412-4604431 Msa0665210:intron 45.0%
GGATGTAAAGGTTGTGGAAG+AGG - chr4_4:4604453-4604472 Msa0665210:intron 45.0%
!! TCAGATGGTGGAAATGGAAG+AGG - chr4_4:4604477-4604496 Msa0665210:intron 45.0%
!! CAGATGGTGGAAATGGAAGA+GGG - chr4_4:4604478-4604497 Msa0665210:intron 45.0%
!! CCAAGCAAAAGAGCATCACA+AGG + chr4_4:4604579-4604598 None:intergenic 45.0%
! CCTTGTGATGCTCTTTTGCT+TGG - chr4_4:4604576-4604595 Msa0665210:intron 45.0%
!!! AGAGCCATTTTGGCTAATCC+TGG - chr4_4:4605565-4605584 Msa0665210:intron 45.0%
TGGGAAACAGAGAAGAATGC+TGG - chr4_4:4605625-4605644 Msa0665210:intron 45.0%
! TAAGGTGTTAAGGGACAGTG+AGG + chr4_4:4606143-4606162 None:intergenic 45.0%
TGGTTGGATAACTAAGGTGG+GGG + chr4_4:4606169-4606188 None:intergenic 45.0%
!! CAATGGAAGGGTTTTGTCTC+CGG - chr4_4:4606280-4606299 Msa0665210:CDS 45.0%
!! AAATGAAAATAATTAAATTA+AGG - chr4_4:4604706-4604725 Msa0665210:intron 5.0%
!! AATGAAAATAATTAAATTAA+GGG - chr4_4:4604707-4604726 Msa0665210:intron 5.0%
!! GATATTTAATTAAAATAATT+AGG - chr4_4:4605255-4605274 Msa0665210:intron 5.0%
!! AAAAAATAAATAAAGAAATA+TGG + chr4_4:4606247-4606266 None:intergenic 5.0%
!! AAATGAAAATAATTAAATTA+AGG - chr4_4:4604706-4604725 Msa0665210:intron 5.0%
!! AATGAAAATAATTAAATTAA+GGG - chr4_4:4604707-4604726 Msa0665210:intron 5.0%
!! GATATTTAATTAAAATAATT+AGG - chr4_4:4605255-4605274 Msa0665210:intron 5.0%
!! AAAAAATAAATAAAGAAATA+TGG + chr4_4:4606247-4606266 None:intergenic 5.0%
! GTGCAAACTTCAGTGATGGG+TGG - chr4_4:4604411-4604430 Msa0665210:intron 50.0%
!! GCAAACTTCAGTGATGGGTG+GGG - chr4_4:4604413-4604432 Msa0665210:intron 50.0%
!! CAAACTTCAGTGATGGGTGG+GGG - chr4_4:4604414-4604433 Msa0665210:intron 50.0%
!! AGAGGCTCAGATGGTGGAAA+TGG - chr4_4:4604471-4604490 Msa0665210:intron 50.0%
! ATGGTGGAAATGGAAGAGGG+TGG - chr4_4:4604481-4604500 Msa0665210:intron 50.0%
CAGCACATCTTGTGCGAGAT+AGG - chr4_4:4604997-4605016 Msa0665210:CDS 50.0%
! TGGGGGGGTTAAGGTGTTAA+GGG + chr4_4:4606152-4606171 None:intergenic 50.0%
TAACTAAGGTGGGGGGGTTA+AGG + chr4_4:4606161-4606180 None:intergenic 50.0%
GTTGGATAACTAAGGTGGGG+GGG + chr4_4:4606167-4606186 None:intergenic 50.0%
GGTTGGATAACTAAGGTGGG+GGG + chr4_4:4606168-4606187 None:intergenic 50.0%
CGGAGACAAAACCCTTCCAT+TGG + chr4_4:4606282-4606301 None:intergenic 50.0%
! GTGCAAACTTCAGTGATGGG+TGG - chr4_4:4604411-4604430 Msa0665210:intron 50.0%
!! GCAAACTTCAGTGATGGGTG+GGG - chr4_4:4604413-4604432 Msa0665210:intron 50.0%
!! CAAACTTCAGTGATGGGTGG+GGG - chr4_4:4604414-4604433 Msa0665210:intron 50.0%
!! AGAGGCTCAGATGGTGGAAA+TGG - chr4_4:4604471-4604490 Msa0665210:intron 50.0%
! ATGGTGGAAATGGAAGAGGG+TGG - chr4_4:4604481-4604500 Msa0665210:intron 50.0%
CAGCACATCTTGTGCGAGAT+AGG - chr4_4:4604997-4605016 Msa0665210:CDS 50.0%
! TGGGGGGGTTAAGGTGTTAA+GGG + chr4_4:4606152-4606171 None:intergenic 50.0%
TAACTAAGGTGGGGGGGTTA+AGG + chr4_4:4606161-4606180 None:intergenic 50.0%
GTTGGATAACTAAGGTGGGG+GGG + chr4_4:4606167-4606186 None:intergenic 50.0%
GGTTGGATAACTAAGGTGGG+GGG + chr4_4:4606168-4606187 None:intergenic 50.0%
CGGAGACAAAACCCTTCCAT+TGG + chr4_4:4606282-4606301 None:intergenic 50.0%
! GGTGGGGGTGTGAGAAGTAA+TGG - chr4_4:4604429-4604448 Msa0665210:intron 55.0%
! GGGGGTGTGAGAAGTAATGG+TGG - chr4_4:4604432-4604451 Msa0665210:intron 55.0%
GGTTGTGGAAGAGGCTCAGA+TGG - chr4_4:4604462-4604481 Msa0665210:intron 55.0%
TGTGGAAGAGGCTCAGATGG+TGG - chr4_4:4604465-4604484 Msa0665210:intron 55.0%
! GTGGGGGGGTTAAGGTGTTA+AGG + chr4_4:4606153-4606172 None:intergenic 55.0%
! GGTGGGGGTGTGAGAAGTAA+TGG - chr4_4:4604429-4604448 Msa0665210:intron 55.0%
! GGGGGTGTGAGAAGTAATGG+TGG - chr4_4:4604432-4604451 Msa0665210:intron 55.0%
GGTTGTGGAAGAGGCTCAGA+TGG - chr4_4:4604462-4604481 Msa0665210:intron 55.0%
TGTGGAAGAGGCTCAGATGG+TGG - chr4_4:4604465-4604484 Msa0665210:intron 55.0%
! GTGGGGGGGTTAAGGTGTTA+AGG + chr4_4:4606153-4606172 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 4604115 4606518 4604115 ID=Msa0665210;Name=Msa0665210
chr4_4 mRNA 4604115 4606518 4604115 ID=Msa0665210-mRNA-1;Parent=Msa0665210;Name=Msa0665210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47|1|1|1|1|1|3|43|250
chr4_4 exon 4604115 4604275 4604115 ID=Msa0665210-mRNA-1:exon:1558;Parent=Msa0665210-mRNA-1
chr4_4 exon 4604935 4605107 4604935 ID=Msa0665210-mRNA-1:exon:1557;Parent=Msa0665210-mRNA-1
chr4_4 exon 4606010 4606518 4606010 ID=Msa0665210-mRNA-1:exon:1556;Parent=Msa0665210-mRNA-1
chr4_4 five_prime_UTR 4606472 4606518 4606472 ID=Msa0665210-mRNA-1:five_prime_utr;Parent=Msa0665210-mRNA-1
chr4_4 CDS 4606010 4606471 4606010 ID=Msa0665210-mRNA-1:cds;Parent=Msa0665210-mRNA-1
chr4_4 CDS 4604935 4605107 4604935 ID=Msa0665210-mRNA-1:cds;Parent=Msa0665210-mRNA-1
chr4_4 CDS 4604158 4604275 4604158 ID=Msa0665210-mRNA-1:cds;Parent=Msa0665210-mRNA-1
chr4_4 three_prime_UTR 4604115 4604157 4604115 ID=Msa0665210-mRNA-1:three_prime_utr;Parent=Msa0665210-mRNA-1
Gene Sequence

>Msa0665210

ATGCTACTTAGAAGCTCCTCTGCACCAATTCTAAGTTCATTGTTACCTTATAATTCCAAAGAGTCCTCTCTTGAGCTAGAACATACTCTTAAGCTTCCTAGAACAATATCATTTTCAAGTTTAAGCCAAAATTTAGCCAAGTTAGACCTTCAAAACTCATCAAGTACTAAAAAACCATTTCTTGTGCCATGTAGTAATGTTCTAAGTACAAATATGAACGAAAGAAACAAAGTGAAAGAGGCTAAGATGGTGCAAACTTCAGTGATGGGTGGGGGTGTGAGAAGTAATGGTGGATGTAAAGGTTGTGGAAGAGGCTCAGATGGTGGAAATGGAAGAGGGTGGAATTTTAATGAAGGAAATAATCATGGTAGAGATAGGTTAGATGCTTATTACCAAAACATGATTGAAGCACACCCTTGTGATGCTCTTTTGCTTGGAAATTATGGAAAGTTTTTGAAGGAGGTTTGTGGAGATTATGCTAAAGCAGAAGAGTATCTAGAAAGAGCCATTTTGGCTAATCCTGGTGATGGTCATATTATGTCCATCTATGCAGAATTAATATGGGAAACAGAGAAGAATGCTGGTCGAGCTCAACAATATTTTGATCAAGCTATTCAAAGTGACCCAGATAATTGCTATGTCCTGGCTTCATATGCAAAATTCCTTTGGGATGCTGAAAATGAAGAAGATACCAAATTAAATCGGATCACATGCATCTCTTTCAATAAACAAAAATCCATATTCGACAAATGA

Protein sequence

>Msa0665210

MLLRSSSAPILSSLLPYNSKESSLELEHTLKLPRTISFSSLSQNLAKLDLQNSSSTKKPFLVPCSNVLSTNMNERNKVKEAKMVQTSVMGGGVRSNGGCKGCGRGSDGGNGRGWNFNEGNNHGRDRLDAYYQNMIEAHPCDALLLGNYGKFLKEVCGDYAKAEEYLERAILANPGDGHIMSIYAELIWETEKNAGRAQQYFDQAIQSDPDNCYVLASYAKFLWDAENEEDTKLNRITCISFNKQKSIFDK*