Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0665210 | XP_003604384.1 | 93.478 | 230 | 12 | 1 | 1 | 230 | 1 | 227 | 1.30e-140 | 404 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0665210 | G7JGY8 | 93.478 | 230 | 12 | 1 | 1 | 230 | 1 | 227 | 6.19e-141 | 404 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0627200 | Msa0665210 | 0.823534 | 1.315503e-53 | -8.615850e-47 |
Msa0665210 | Msa0872440 | 0.802082 | 6.641911e-49 | -8.615850e-47 |
Msa0665210 | Msa1023180 | 0.801101 | 1.055625e-48 | -8.615850e-47 |
Msa0665210 | Msa1206100 | 0.827489 | 1.520939e-54 | -8.615850e-47 |
Msa0665210 | Msa1225800 | 0.816085 | 6.632659e-52 | -8.615850e-47 |
Msa0665210 | Msa1329550 | 0.825086 | 5.678365e-54 | -8.615850e-47 |
Msa0665210 | Msa1448630 | 0.807418 | 5.104940e-50 | -8.615850e-47 |
Msa0255930 | Msa0665210 | 0.807157 | 5.798112e-50 | -8.615850e-47 |
Msa0530480 | Msa0665210 | 0.825050 | 5.789781e-54 | -8.615850e-47 |
Msa0530490 | Msa0665210 | 0.838045 | 3.631088e-57 | -8.615850e-47 |
Msa0587350 | Msa0665210 | 0.978883 | 9.132566e-147 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0665210 | MtrunA17_Chr4g0003311 | 94.839 | 155 | 5 | 1 | 1 | 155 | 1 | 152 | 8.75e-103 | 296 |
Msa0665210 | MtrunA17_Chr2g0333081 | 48.855 | 262 | 118 | 5 | 1 | 248 | 1 | 260 | 5.42e-61 | 193 |
Msa0665210 | MtrunA17_Chr4g0063891 | 39.615 | 260 | 118 | 6 | 1 | 223 | 1 | 258 | 2.11e-48 | 161 |
Msa0665210 | MtrunA17_Chr5g0411051 | 53.922 | 102 | 47 | 0 | 124 | 225 | 119 | 220 | 4.46e-35 | 125 |
Msa0665210 | MtrunA17_Chr4g0003301 | 80.000 | 65 | 13 | 0 | 154 | 218 | 6 | 70 | 1.85e-34 | 118 |
Msa0665210 | MtrunA17_Chr7g0262541 | 42.400 | 125 | 69 | 1 | 115 | 239 | 228 | 349 | 2.05e-30 | 116 |
Msa0665210 | MtrunA17_Chr7g0262061 | 44.262 | 122 | 64 | 2 | 110 | 230 | 211 | 329 | 4.53e-30 | 115 |
Msa0665210 | MtrunA17_Chr1g0186111 | 35.948 | 153 | 90 | 2 | 101 | 246 | 96 | 247 | 5.36e-24 | 99.0 |
Msa0665210 | MtrunA17_Chr1g0186111 | 40.000 | 110 | 65 | 1 | 121 | 229 | 266 | 375 | 8.63e-19 | 84.3 |
Msa0665210 | MtrunA17_Chr3g0104511 | 36.538 | 104 | 66 | 0 | 126 | 229 | 398 | 501 | 3.54e-18 | 83.2 |
Msa0665210 | MtrunA17_Chr5g0436741 | 33.028 | 109 | 72 | 1 | 118 | 225 | 288 | 396 | 6.80e-14 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0665210 | AT5G20190.1 | 32.308 | 260 | 135 | 5 | 1 | 225 | 1 | 254 | 4.18e-38 | 135 |
Msa0665210 | AT4G32340.1 | 59.000 | 100 | 40 | 1 | 127 | 225 | 110 | 209 | 4.04e-37 | 131 |
Msa0665210 | AT4G17940.1 | 52.941 | 102 | 48 | 0 | 124 | 225 | 147 | 248 | 4.66e-34 | 124 |
Msa0665210 | AT1G04530.1 | 42.105 | 95 | 54 | 1 | 130 | 224 | 124 | 217 | 6.91e-20 | 87.0 |
Msa0665210 | AT2G29670.1 | 36.667 | 120 | 65 | 1 | 123 | 231 | 416 | 535 | 8.55e-19 | 85.5 |
Msa0665210 | AT2G29670.2 | 36.667 | 120 | 65 | 1 | 123 | 231 | 416 | 535 | 8.55e-19 | 85.5 |
Msa0665210 | AT1G07280.3 | 35.577 | 104 | 67 | 0 | 126 | 229 | 434 | 537 | 4.01e-18 | 83.6 |
Msa0665210 | AT1G07280.1 | 35.577 | 104 | 67 | 0 | 126 | 229 | 434 | 537 | 4.01e-18 | 83.6 |
Msa0665210 | AT1G07280.2 | 35.577 | 104 | 67 | 0 | 126 | 229 | 434 | 537 | 4.01e-18 | 83.6 |
Msa0665210 | AT3G47080.1 | 34.615 | 104 | 68 | 0 | 126 | 229 | 399 | 502 | 7.54e-14 | 70.9 |
Find 48 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCTAACTTGGCTAAATTT+TGG | 0.170765 | 4_4:+4606324 | None:intergenic |
CTTGAAAATGATATTGTTCT+AGG | 0.177991 | 4_4:+4606353 | None:intergenic |
GCATGTGATCCGATTTAATT+TGG | 0.178454 | 4_4:+4604197 | None:intergenic |
TATATATCATACCAATTATC+TGG | 0.209326 | 4_4:+4604923 | None:intergenic |
CCATCTATGCAGAATTAATA+TGG | 0.211193 | 4_4:-4605006 | Msa0665210:CDS |
CCATATTAATTCTGCATAGA+TGG | 0.249294 | 4_4:+4605006 | None:intergenic |
GTATCTAGAAAGAGCCATTT+TGG | 0.251473 | 4_4:-4605056 | Msa0665210:CDS |
GAGGACTCTTTGGAATTATA+AGG | 0.297415 | 4_4:+4606404 | None:intergenic |
CTTCATATGCAAAATTCCTT+TGG | 0.300863 | 4_4:-4604242 | Msa0665210:CDS |
TTCAAAGTGACCCAGATAAT+TGG | 0.327872 | 4_4:-4604934 | Msa0665210:intron |
TAGCTCAAGAGAGGACTCTT+TGG | 0.349079 | 4_4:+4606394 | None:intergenic |
AGGATTTAAGCTATTCTCAT+TGG | 0.356265 | 4_4:+4604117 | None:intergenic |
ATCACCAGGATTAGCCAAAA+TGG | 0.357650 | 4_4:+4605042 | None:intergenic |
TTCATATGCAAAATTCCTTT+GGG | 0.366011 | 4_4:-4604241 | Msa0665210:CDS |
TTACTACATGGCACAAGAAA+TGG | 0.383185 | 4_4:+4606275 | None:intergenic |
GGTAACAATGAACTTAGAAT+TGG | 0.408424 | 4_4:+4606425 | None:intergenic |
AGAGGCTCAGATGGTGGAAA+TGG | 0.433784 | 4_4:-4606140 | Msa0665210:CDS |
GGTGTGCTTCAATCATGTTT+TGG | 0.439388 | 4_4:+4606057 | None:intergenic |
GAAATAATCATGGTAGAGAT+AGG | 0.441347 | 4_4:-4606094 | Msa0665210:CDS |
GCAAACTTCAGTGATGGGTG+GGG | 0.443619 | 4_4:-4606198 | Msa0665210:CDS |
AAGAAGATACCAAATTAAAT+CGG | 0.450419 | 4_4:-4604206 | Msa0665210:CDS |
TTTAATGAAGGAAATAATCA+TGG | 0.466976 | 4_4:-4606104 | Msa0665210:CDS |
CAAAGTGAAAGAGGCTAAGA+TGG | 0.477457 | 4_4:-4606222 | Msa0665210:CDS |
AATAATATGCAGCTATGTCC+TGG | 0.477958 | 4_4:-4604265 | Msa0665210:intron |
CGAAAGAAACAAAGTGAAAG+AGG | 0.478819 | 4_4:-4606231 | Msa0665210:CDS |
CAAACTTCAGTGATGGGTGG+GGG | 0.480755 | 4_4:-4606197 | Msa0665210:CDS |
CATCTATGCAGAATTAATAT+GGG | 0.481359 | 4_4:-4605005 | Msa0665210:CDS |
GCAAAGTGAAACAAAGATCA+AGG | 0.499635 | 4_4:+4606485 | None:intergenic |
GGATGTAAAGGTTGTGGAAG+AGG | 0.521111 | 4_4:-4606158 | Msa0665210:CDS |
TGCAAACTTCAGTGATGGGT+GGG | 0.525353 | 4_4:-4606199 | Msa0665210:CDS |
TCAGATGGTGGAAATGGAAG+AGG | 0.527871 | 4_4:-4606134 | Msa0665210:CDS |
AGAAGTAATGGTGGATGTAA+AGG | 0.545315 | 4_4:-4606170 | Msa0665210:CDS |
AATGGTGGATGTAAAGGTTG+TGG | 0.550134 | 4_4:-4606164 | Msa0665210:CDS |
GGTTGTGGAAGAGGCTCAGA+TGG | 0.550677 | 4_4:-4606149 | Msa0665210:CDS |
ATATATCATACCAATTATCT+GGG | 0.554667 | 4_4:+4604924 | None:intergenic |
GTGCAAACTTCAGTGATGGG+TGG | 0.555928 | 4_4:-4606200 | Msa0665210:CDS |
TGGGAAACAGAGAAGAATGC+TGG | 0.574769 | 4_4:-4604986 | Msa0665210:CDS |
GTACTTAGAACATTACTACA+TGG | 0.576469 | 4_4:+4606263 | None:intergenic |
CCAAGCAAAAGAGCATCACA+AGG | 0.607278 | 4_4:+4606035 | None:intergenic |
TGTGGAAGAGGCTCAGATGG+TGG | 0.608176 | 4_4:-4606146 | Msa0665210:CDS |
GATGGTGCAAACTTCAGTGA+TGG | 0.608566 | 4_4:-4606204 | Msa0665210:CDS |
CAGATGGTGGAAATGGAAGA+GGG | 0.618945 | 4_4:-4606133 | Msa0665210:CDS |
AGTATGTTCTAGCTCAAGAG+AGG | 0.631782 | 4_4:+4606385 | None:intergenic |
ATGGTGGAAATGGAAGAGGG+TGG | 0.650938 | 4_4:-4606130 | Msa0665210:CDS |
ATGGTGCAAACTTCAGTGAT+GGG | 0.654906 | 4_4:-4606203 | Msa0665210:CDS |
TGAACTTAGAATTGGTGCAG+AGG | 0.666303 | 4_4:+4606433 | None:intergenic |
GACATAATATGACCATCACC+AGG | 0.669196 | 4_4:+4605028 | None:intergenic |
CAAGCAAAAGAGCATCACAA+GGG | 0.724452 | 4_4:+4606036 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTCAAAATAAAACTAAAAA+TGG | + | chr4_4:4604751-4604770 | None:intergenic | 10.0% |
!!! | TATTTTTAAAAACATAAACA+TGG | - | chr4_4:4604822-4604841 | Msa0665210:intron | 10.0% |
!!! | ATTATACAACTTTTTTTTTA+AGG | + | chr4_4:4604955-4604974 | None:intergenic | 10.0% |
!! | ATATATTAACACAAAAAATA+TGG | + | chr4_4:4605023-4605042 | None:intergenic | 10.0% |
!! | TTAAAAAAAAAGTTATTAAG+CGG | + | chr4_4:4605098-4605117 | None:intergenic | 10.0% |
!! | AGATATTAATATAAATCTTA+TGG | + | chr4_4:4605913-4605932 | None:intergenic | 10.0% |
!! | TAATGTTAATAAATTAACAT+TGG | + | chr4_4:4606093-4606112 | None:intergenic | 10.0% |
!! | TTTCAAAATAAAACTAAAAA+TGG | + | chr4_4:4604751-4604770 | None:intergenic | 10.0% |
!!! | TATTTTTAAAAACATAAACA+TGG | - | chr4_4:4604822-4604841 | Msa0665210:intron | 10.0% |
!!! | ATTATACAACTTTTTTTTTA+AGG | + | chr4_4:4604955-4604974 | None:intergenic | 10.0% |
!! | ATATATTAACACAAAAAATA+TGG | + | chr4_4:4605023-4605042 | None:intergenic | 10.0% |
!! | TTAAAAAAAAAGTTATTAAG+CGG | + | chr4_4:4605098-4605117 | None:intergenic | 10.0% |
!! | AGATATTAATATAAATCTTA+TGG | + | chr4_4:4605913-4605932 | None:intergenic | 10.0% |
!! | TAATGTTAATAAATTAACAT+TGG | + | chr4_4:4606093-4606112 | None:intergenic | 10.0% |
!!! | GATATATTAATTTTTTTGCA+TGG | - | chr4_4:4604641-4604660 | Msa0665210:intron | 15.0% |
!! | AGTTGTATAATATATTAACA+CGG | - | chr4_4:4604964-4604983 | Msa0665210:CDS | 15.0% |
!!! | ATATATTGAGTATCTTTTTA+AGG | - | chr4_4:4605719-4605738 | Msa0665210:intron | 15.0% |
!!! | CTATATAAATGTATTGTTTT+TGG | + | chr4_4:4605954-4605973 | None:intergenic | 15.0% |
!! | TGATTAAGGTAATATAAAAT+TGG | + | chr4_4:4606189-4606208 | None:intergenic | 15.0% |
!!! | GATATATTAATTTTTTTGCA+TGG | - | chr4_4:4604641-4604660 | Msa0665210:intron | 15.0% |
!! | AGTTGTATAATATATTAACA+CGG | - | chr4_4:4604964-4604983 | Msa0665210:CDS | 15.0% |
!!! | ATATATTGAGTATCTTTTTA+AGG | - | chr4_4:4605719-4605738 | Msa0665210:intron | 15.0% |
!!! | CTATATAAATGTATTGTTTT+TGG | + | chr4_4:4605954-4605973 | None:intergenic | 15.0% |
!! | TGATTAAGGTAATATAAAAT+TGG | + | chr4_4:4606189-4606208 | None:intergenic | 15.0% |
!! | TTTAATGAAGGAAATAATCA+TGG | - | chr4_4:4604507-4604526 | Msa0665210:intron | 20.0% |
!!! | AAATTATGGAAAGTTTTTGA+AGG | - | chr4_4:4604599-4604618 | Msa0665210:intron | 20.0% |
!! | GTTGTATAATATATTAACAC+GGG | - | chr4_4:4604965-4604984 | Msa0665210:CDS | 20.0% |
!!! | GCGCTTAATAAATTTTTATT+AGG | - | chr4_4:4605118-4605137 | Msa0665210:intron | 20.0% |
!! | TTAATCTTTATGTGTCTTAA+TGG | + | chr4_4:4605234-4605253 | None:intergenic | 20.0% |
!!! | TTTCTCTCTTTGTTTTAATA+TGG | - | chr4_4:4605468-4605487 | Msa0665210:intron | 20.0% |
!! | ATATATCATACCAATTATCT+GGG | + | chr4_4:4605690-4605709 | None:intergenic | 20.0% |
!! | TATATATCATACCAATTATC+TGG | + | chr4_4:4605691-4605710 | None:intergenic | 20.0% |
!!! | AATCTTATGGTGTTTATTTT+GGG | + | chr4_4:4605900-4605919 | None:intergenic | 20.0% |
!!! | AAATCTTATGGTGTTTATTT+TGG | + | chr4_4:4605901-4605920 | None:intergenic | 20.0% |
!!! | ATTGTTTTTGGTGAATTTTT+CGG | + | chr4_4:4605942-4605961 | None:intergenic | 20.0% |
!! | AAATTTGAAGAGTTAAAGTT+TGG | - | chr4_4:4606038-4606057 | Msa0665210:CDS | 20.0% |
!! | TATTAACATTATCTTAAGAG+TGG | - | chr4_4:4606102-4606121 | Msa0665210:CDS | 20.0% |
!! | ATTAACATTATCTTAAGAGT+GGG | - | chr4_4:4606103-4606122 | Msa0665210:CDS | 20.0% |
!! | TAAGGTAATATAAAATTGGT+TGG | + | chr4_4:4606185-4606204 | None:intergenic | 20.0% |
!!! | TTTTTATTTCTGTTTACCAA+TGG | - | chr4_4:4606263-4606282 | Msa0665210:CDS | 20.0% |
!! | TATTATCAACAAGATAAATC+CGG | + | chr4_4:4606302-4606321 | None:intergenic | 20.0% |
!! | AAGAAGATACCAAATTAAAT+CGG | - | chr4_4:4606405-4606424 | Msa0665210:CDS | 20.0% |
!!! | TATTTTTCATTTGTCGAATA+TGG | + | chr4_4:4606462-4606481 | None:intergenic | 20.0% |
!! | TTTAATGAAGGAAATAATCA+TGG | - | chr4_4:4604507-4604526 | Msa0665210:intron | 20.0% |
!!! | AAATTATGGAAAGTTTTTGA+AGG | - | chr4_4:4604599-4604618 | Msa0665210:intron | 20.0% |
!! | GTTGTATAATATATTAACAC+GGG | - | chr4_4:4604965-4604984 | Msa0665210:CDS | 20.0% |
!!! | GCGCTTAATAAATTTTTATT+AGG | - | chr4_4:4605118-4605137 | Msa0665210:intron | 20.0% |
!! | TTAATCTTTATGTGTCTTAA+TGG | + | chr4_4:4605234-4605253 | None:intergenic | 20.0% |
!!! | TTTCTCTCTTTGTTTTAATA+TGG | - | chr4_4:4605468-4605487 | Msa0665210:intron | 20.0% |
!! | ATATATCATACCAATTATCT+GGG | + | chr4_4:4605690-4605709 | None:intergenic | 20.0% |
!! | TATATATCATACCAATTATC+TGG | + | chr4_4:4605691-4605710 | None:intergenic | 20.0% |
!!! | AATCTTATGGTGTTTATTTT+GGG | + | chr4_4:4605900-4605919 | None:intergenic | 20.0% |
!!! | AAATCTTATGGTGTTTATTT+TGG | + | chr4_4:4605901-4605920 | None:intergenic | 20.0% |
!!! | ATTGTTTTTGGTGAATTTTT+CGG | + | chr4_4:4605942-4605961 | None:intergenic | 20.0% |
!! | AAATTTGAAGAGTTAAAGTT+TGG | - | chr4_4:4606038-4606057 | Msa0665210:CDS | 20.0% |
!! | TATTAACATTATCTTAAGAG+TGG | - | chr4_4:4606102-4606121 | Msa0665210:CDS | 20.0% |
!! | ATTAACATTATCTTAAGAGT+GGG | - | chr4_4:4606103-4606122 | Msa0665210:CDS | 20.0% |
!! | TAAGGTAATATAAAATTGGT+TGG | + | chr4_4:4606185-4606204 | None:intergenic | 20.0% |
!!! | TTTTTATTTCTGTTTACCAA+TGG | - | chr4_4:4606263-4606282 | Msa0665210:CDS | 20.0% |
!! | TATTATCAACAAGATAAATC+CGG | + | chr4_4:4606302-4606321 | None:intergenic | 20.0% |
!! | AAGAAGATACCAAATTAAAT+CGG | - | chr4_4:4606405-4606424 | Msa0665210:CDS | 20.0% |
!!! | TATTTTTCATTTGTCGAATA+TGG | + | chr4_4:4606462-4606481 | None:intergenic | 20.0% |
! | CTTGAAAATGATATTGTTCT+AGG | + | chr4_4:4604261-4604280 | None:intergenic | 25.0% |
! | AAACATGGATGTTTATCAAA+TGG | - | chr4_4:4604837-4604856 | Msa0665210:intron | 25.0% |
! | GCTTGTTCAAAAAATTAACA+CGG | - | chr4_4:4605052-4605071 | Msa0665210:CDS | 25.0% |
! | CTTGTTCAAAAAATTAACAC+GGG | - | chr4_4:4605053-4605072 | Msa0665210:CDS | 25.0% |
!! | CTGATTTTCATTTTGCAAAT+AGG | - | chr4_4:4605504-4605523 | Msa0665210:intron | 25.0% |
! | CATCTATGCAGAATTAATAT+GGG | - | chr4_4:4605606-4605625 | Msa0665210:intron | 25.0% |
!! | GTTTGTAGTTTTTGAATCAT+CGG | + | chr4_4:4605836-4605855 | None:intergenic | 25.0% |
! | CTAAAAGCAATGTATATAGA+TGG | - | chr4_4:4605855-4605874 | Msa0665210:intron | 25.0% |
! | TTAACATTATCTTAAGAGTG+GGG | - | chr4_4:4606104-4606123 | Msa0665210:CDS | 25.0% |
! | TAAAATTGGTTGGATAACTA+AGG | + | chr4_4:4606175-4606194 | None:intergenic | 25.0% |
! | ATATTACCTTAATCACTTGA+TGG | - | chr4_4:4606194-4606213 | Msa0665210:CDS | 25.0% |
! | TTCATATGCAAAATTCCTTT+GGG | - | chr4_4:4606370-4606389 | Msa0665210:CDS | 25.0% |
! | CTTGAAAATGATATTGTTCT+AGG | + | chr4_4:4604261-4604280 | None:intergenic | 25.0% |
! | AAACATGGATGTTTATCAAA+TGG | - | chr4_4:4604837-4604856 | Msa0665210:intron | 25.0% |
! | GCTTGTTCAAAAAATTAACA+CGG | - | chr4_4:4605052-4605071 | Msa0665210:CDS | 25.0% |
! | CTTGTTCAAAAAATTAACAC+GGG | - | chr4_4:4605053-4605072 | Msa0665210:CDS | 25.0% |
!! | CTGATTTTCATTTTGCAAAT+AGG | - | chr4_4:4605504-4605523 | Msa0665210:intron | 25.0% |
! | CATCTATGCAGAATTAATAT+GGG | - | chr4_4:4605606-4605625 | Msa0665210:intron | 25.0% |
!! | GTTTGTAGTTTTTGAATCAT+CGG | + | chr4_4:4605836-4605855 | None:intergenic | 25.0% |
! | CTAAAAGCAATGTATATAGA+TGG | - | chr4_4:4605855-4605874 | Msa0665210:intron | 25.0% |
! | TTAACATTATCTTAAGAGTG+GGG | - | chr4_4:4606104-4606123 | Msa0665210:CDS | 25.0% |
! | TAAAATTGGTTGGATAACTA+AGG | + | chr4_4:4606175-4606194 | None:intergenic | 25.0% |
! | ATATTACCTTAATCACTTGA+TGG | - | chr4_4:4606194-4606213 | Msa0665210:CDS | 25.0% |
! | TTCATATGCAAAATTCCTTT+GGG | - | chr4_4:4606370-4606389 | Msa0665210:CDS | 25.0% |
GGTAACAATGAACTTAGAAT+TGG | + | chr4_4:4604189-4604208 | None:intergenic | 30.0% | |
!! | TAGTACTTGATGAGTTTTGA+AGG | + | chr4_4:4604311-4604330 | None:intergenic | 30.0% |
GTACTTAGAACATTACTACA+TGG | + | chr4_4:4604351-4604370 | None:intergenic | 30.0% | |
GAAATAATCATGGTAGAGAT+AGG | - | chr4_4:4604517-4604536 | Msa0665210:intron | 30.0% | |
!! | TTATGGAAAGTTTTTGAAGG+AGG | - | chr4_4:4604602-4604621 | Msa0665210:intron | 30.0% |
TTTGAAGGAGGTAATAATCA+TGG | - | chr4_4:4604614-4604633 | Msa0665210:intron | 30.0% | |
! | GTAATTTTCTAACAGTGAGA+TGG | - | chr4_4:4604782-4604801 | Msa0665210:intron | 30.0% |
! | ATAATTCAGCAGAAGAGTTT+TGG | - | chr4_4:4605367-4605386 | Msa0665210:intron | 30.0% |
!!! | CTCTCTTTGTTTTAATATGG+AGG | - | chr4_4:4605471-4605490 | Msa0665210:intron | 30.0% |
! | TCATTTTGCAAATAGGTTTG+TGG | - | chr4_4:4605511-4605530 | Msa0665210:intron | 30.0% |
CCATATTAATTCTGCATAGA+TGG | + | chr4_4:4605608-4605627 | None:intergenic | 30.0% | |
CCATCTATGCAGAATTAATA+TGG | - | chr4_4:4605605-4605624 | Msa0665210:intron | 30.0% | |
TACAAACCATCAAGTGATTA+AGG | + | chr4_4:4606203-4606222 | None:intergenic | 30.0% | |
TGGCTAGAGAATTAATTACT+TGG | + | chr4_4:4606227-4606246 | None:intergenic | 30.0% | |
! | TATTTCTGTTTACCAATGGA+AGG | - | chr4_4:4606267-4606286 | Msa0665210:CDS | 30.0% |
ATTTCTGTTTACCAATGGAA+GGG | - | chr4_4:4606268-4606287 | Msa0665210:CDS | 30.0% | |
CTTCATATGCAAAATTCCTT+TGG | - | chr4_4:4606369-4606388 | Msa0665210:CDS | 30.0% | |
AGGATTTAAGCTATTCTCAT+TGG | + | chr4_4:4606497-4606516 | None:intergenic | 30.0% | |
GGTAACAATGAACTTAGAAT+TGG | + | chr4_4:4604189-4604208 | None:intergenic | 30.0% | |
!! | TAGTACTTGATGAGTTTTGA+AGG | + | chr4_4:4604311-4604330 | None:intergenic | 30.0% |
GTACTTAGAACATTACTACA+TGG | + | chr4_4:4604351-4604370 | None:intergenic | 30.0% | |
GAAATAATCATGGTAGAGAT+AGG | - | chr4_4:4604517-4604536 | Msa0665210:intron | 30.0% | |
!! | TTATGGAAAGTTTTTGAAGG+AGG | - | chr4_4:4604602-4604621 | Msa0665210:intron | 30.0% |
TTTGAAGGAGGTAATAATCA+TGG | - | chr4_4:4604614-4604633 | Msa0665210:intron | 30.0% | |
! | GTAATTTTCTAACAGTGAGA+TGG | - | chr4_4:4604782-4604801 | Msa0665210:intron | 30.0% |
! | ATAATTCAGCAGAAGAGTTT+TGG | - | chr4_4:4605367-4605386 | Msa0665210:intron | 30.0% |
!!! | CTCTCTTTGTTTTAATATGG+AGG | - | chr4_4:4605471-4605490 | Msa0665210:intron | 30.0% |
! | TCATTTTGCAAATAGGTTTG+TGG | - | chr4_4:4605511-4605530 | Msa0665210:intron | 30.0% |
CCATATTAATTCTGCATAGA+TGG | + | chr4_4:4605608-4605627 | None:intergenic | 30.0% | |
CCATCTATGCAGAATTAATA+TGG | - | chr4_4:4605605-4605624 | Msa0665210:intron | 30.0% | |
TACAAACCATCAAGTGATTA+AGG | + | chr4_4:4606203-4606222 | None:intergenic | 30.0% | |
TGGCTAGAGAATTAATTACT+TGG | + | chr4_4:4606227-4606246 | None:intergenic | 30.0% | |
! | TATTTCTGTTTACCAATGGA+AGG | - | chr4_4:4606267-4606286 | Msa0665210:CDS | 30.0% |
ATTTCTGTTTACCAATGGAA+GGG | - | chr4_4:4606268-4606287 | Msa0665210:CDS | 30.0% | |
CTTCATATGCAAAATTCCTT+TGG | - | chr4_4:4606369-4606388 | Msa0665210:CDS | 30.0% | |
AGGATTTAAGCTATTCTCAT+TGG | + | chr4_4:4606497-4606516 | None:intergenic | 30.0% | |
GCAAAGTGAAACAAAGATCA+AGG | + | chr4_4:4604129-4604148 | None:intergenic | 35.0% | |
!! | GAGGACTCTTTGGAATTATA+AGG | + | chr4_4:4604210-4604229 | None:intergenic | 35.0% |
! | GGTCTAACTTGGCTAAATTT+TGG | + | chr4_4:4604290-4604309 | None:intergenic | 35.0% |
!!! | TGAGTTTTGAAGGTCTAACT+TGG | + | chr4_4:4604301-4604320 | None:intergenic | 35.0% |
TTACTACATGGCACAAGAAA+TGG | + | chr4_4:4604339-4604358 | None:intergenic | 35.0% | |
CGAAAGAAACAAAGTGAAAG+AGG | - | chr4_4:4604380-4604399 | Msa0665210:intron | 35.0% | |
!! | AGAAGTAATGGTGGATGTAA+AGG | - | chr4_4:4604441-4604460 | Msa0665210:intron | 35.0% |
!! | AGAGGGTGGAATTTTAATGA+AGG | - | chr4_4:4604495-4604514 | Msa0665210:intron | 35.0% |
! | GCTCTTTTGCTTGGAAATTA+TGG | - | chr4_4:4604585-4604604 | Msa0665210:intron | 35.0% |
CATGGATGTTTATCAAATGG+AGG | - | chr4_4:4604840-4604859 | Msa0665210:intron | 35.0% | |
AAAACTCAATGTCACGTTGA+AGG | - | chr4_4:4605154-4605173 | Msa0665210:intron | 35.0% | |
! | GTATCTAGAAAGAGCCATTT+TGG | - | chr4_4:4605555-4605574 | Msa0665210:intron | 35.0% |
TTCAAAGTGACCCAGATAAT+TGG | - | chr4_4:4605677-4605696 | Msa0665210:intron | 35.0% | |
ATTGGTTGGATAACTAAGGT+GGG | + | chr4_4:4606171-4606190 | None:intergenic | 35.0% | |
AATTGGTTGGATAACTAAGG+TGG | + | chr4_4:4606172-4606191 | None:intergenic | 35.0% | |
AATAATATGCAGCTATGTCC+TGG | - | chr4_4:4606346-4606365 | Msa0665210:CDS | 35.0% | |
GCATGTGATCCGATTTAATT+TGG | + | chr4_4:4606417-4606436 | None:intergenic | 35.0% | |
GCAAAGTGAAACAAAGATCA+AGG | + | chr4_4:4604129-4604148 | None:intergenic | 35.0% | |
!! | GAGGACTCTTTGGAATTATA+AGG | + | chr4_4:4604210-4604229 | None:intergenic | 35.0% |
! | GGTCTAACTTGGCTAAATTT+TGG | + | chr4_4:4604290-4604309 | None:intergenic | 35.0% |
!!! | TGAGTTTTGAAGGTCTAACT+TGG | + | chr4_4:4604301-4604320 | None:intergenic | 35.0% |
TTACTACATGGCACAAGAAA+TGG | + | chr4_4:4604339-4604358 | None:intergenic | 35.0% | |
CGAAAGAAACAAAGTGAAAG+AGG | - | chr4_4:4604380-4604399 | Msa0665210:intron | 35.0% | |
!! | AGAAGTAATGGTGGATGTAA+AGG | - | chr4_4:4604441-4604460 | Msa0665210:intron | 35.0% |
!! | AGAGGGTGGAATTTTAATGA+AGG | - | chr4_4:4604495-4604514 | Msa0665210:intron | 35.0% |
! | GCTCTTTTGCTTGGAAATTA+TGG | - | chr4_4:4604585-4604604 | Msa0665210:intron | 35.0% |
CATGGATGTTTATCAAATGG+AGG | - | chr4_4:4604840-4604859 | Msa0665210:intron | 35.0% | |
AAAACTCAATGTCACGTTGA+AGG | - | chr4_4:4605154-4605173 | Msa0665210:intron | 35.0% | |
! | GTATCTAGAAAGAGCCATTT+TGG | - | chr4_4:4605555-4605574 | Msa0665210:intron | 35.0% |
TTCAAAGTGACCCAGATAAT+TGG | - | chr4_4:4605677-4605696 | Msa0665210:intron | 35.0% | |
ATTGGTTGGATAACTAAGGT+GGG | + | chr4_4:4606171-4606190 | None:intergenic | 35.0% | |
AATTGGTTGGATAACTAAGG+TGG | + | chr4_4:4606172-4606191 | None:intergenic | 35.0% | |
AATAATATGCAGCTATGTCC+TGG | - | chr4_4:4606346-4606365 | Msa0665210:CDS | 35.0% | |
GCATGTGATCCGATTTAATT+TGG | + | chr4_4:4606417-4606436 | None:intergenic | 35.0% | |
TGAACTTAGAATTGGTGCAG+AGG | + | chr4_4:4604181-4604200 | None:intergenic | 40.0% | |
!! | AGTATGTTCTAGCTCAAGAG+AGG | + | chr4_4:4604229-4604248 | None:intergenic | 40.0% |
CAAAGTGAAAGAGGCTAAGA+TGG | - | chr4_4:4604389-4604408 | Msa0665210:intron | 40.0% | |
ATGGTGCAAACTTCAGTGAT+GGG | - | chr4_4:4604408-4604427 | Msa0665210:intron | 40.0% | |
!! | AATGGTGGATGTAAAGGTTG+TGG | - | chr4_4:4604447-4604466 | Msa0665210:intron | 40.0% |
! | GGTGTGCTTCAATCATGTTT+TGG | + | chr4_4:4604557-4604576 | None:intergenic | 40.0% |
!! | CAAGCAAAAGAGCATCACAA+GGG | + | chr4_4:4604578-4604597 | None:intergenic | 40.0% |
!! | ATCACCAGGATTAGCCAAAA+TGG | + | chr4_4:4605572-4605591 | None:intergenic | 40.0% |
!!! | ATTTTGGCTAATCCTGGTGA+TGG | - | chr4_4:4605571-4605590 | Msa0665210:intron | 40.0% |
GACATAATATGACCATCACC+AGG | + | chr4_4:4605586-4605605 | None:intergenic | 40.0% | |
GGTCTCTATTCGTCTTAAGT+AGG | + | chr4_4:4605815-4605834 | None:intergenic | 40.0% | |
TTGGTTGGATAACTAAGGTG+GGG | + | chr4_4:4606170-4606189 | None:intergenic | 40.0% | |
! | GGAATTTTGCATATGAAGCC+AGG | + | chr4_4:4606367-4606386 | None:intergenic | 40.0% |
! | CTTCATTTTCAGCATCCCAA+AGG | + | chr4_4:4606388-4606407 | None:intergenic | 40.0% |
TGAACTTAGAATTGGTGCAG+AGG | + | chr4_4:4604181-4604200 | None:intergenic | 40.0% | |
!! | AGTATGTTCTAGCTCAAGAG+AGG | + | chr4_4:4604229-4604248 | None:intergenic | 40.0% |
CAAAGTGAAAGAGGCTAAGA+TGG | - | chr4_4:4604389-4604408 | Msa0665210:intron | 40.0% | |
ATGGTGCAAACTTCAGTGAT+GGG | - | chr4_4:4604408-4604427 | Msa0665210:intron | 40.0% | |
!! | AATGGTGGATGTAAAGGTTG+TGG | - | chr4_4:4604447-4604466 | Msa0665210:intron | 40.0% |
! | GGTGTGCTTCAATCATGTTT+TGG | + | chr4_4:4604557-4604576 | None:intergenic | 40.0% |
!! | CAAGCAAAAGAGCATCACAA+GGG | + | chr4_4:4604578-4604597 | None:intergenic | 40.0% |
!! | ATCACCAGGATTAGCCAAAA+TGG | + | chr4_4:4605572-4605591 | None:intergenic | 40.0% |
!!! | ATTTTGGCTAATCCTGGTGA+TGG | - | chr4_4:4605571-4605590 | Msa0665210:intron | 40.0% |
GACATAATATGACCATCACC+AGG | + | chr4_4:4605586-4605605 | None:intergenic | 40.0% | |
GGTCTCTATTCGTCTTAAGT+AGG | + | chr4_4:4605815-4605834 | None:intergenic | 40.0% | |
TTGGTTGGATAACTAAGGTG+GGG | + | chr4_4:4606170-4606189 | None:intergenic | 40.0% | |
! | GGAATTTTGCATATGAAGCC+AGG | + | chr4_4:4606367-4606386 | None:intergenic | 40.0% |
! | CTTCATTTTCAGCATCCCAA+AGG | + | chr4_4:4606388-4606407 | None:intergenic | 40.0% |
TAGCTCAAGAGAGGACTCTT+TGG | + | chr4_4:4604220-4604239 | None:intergenic | 45.0% | |
GATGGTGCAAACTTCAGTGA+TGG | - | chr4_4:4604407-4604426 | Msa0665210:intron | 45.0% | |
!! | TGCAAACTTCAGTGATGGGT+GGG | - | chr4_4:4604412-4604431 | Msa0665210:intron | 45.0% |
GGATGTAAAGGTTGTGGAAG+AGG | - | chr4_4:4604453-4604472 | Msa0665210:intron | 45.0% | |
!! | TCAGATGGTGGAAATGGAAG+AGG | - | chr4_4:4604477-4604496 | Msa0665210:intron | 45.0% |
!! | CAGATGGTGGAAATGGAAGA+GGG | - | chr4_4:4604478-4604497 | Msa0665210:intron | 45.0% |
!! | CCAAGCAAAAGAGCATCACA+AGG | + | chr4_4:4604579-4604598 | None:intergenic | 45.0% |
! | CCTTGTGATGCTCTTTTGCT+TGG | - | chr4_4:4604576-4604595 | Msa0665210:intron | 45.0% |
!!! | AGAGCCATTTTGGCTAATCC+TGG | - | chr4_4:4605565-4605584 | Msa0665210:intron | 45.0% |
TGGGAAACAGAGAAGAATGC+TGG | - | chr4_4:4605625-4605644 | Msa0665210:intron | 45.0% | |
! | TAAGGTGTTAAGGGACAGTG+AGG | + | chr4_4:4606143-4606162 | None:intergenic | 45.0% |
TGGTTGGATAACTAAGGTGG+GGG | + | chr4_4:4606169-4606188 | None:intergenic | 45.0% | |
!! | CAATGGAAGGGTTTTGTCTC+CGG | - | chr4_4:4606280-4606299 | Msa0665210:CDS | 45.0% |
TAGCTCAAGAGAGGACTCTT+TGG | + | chr4_4:4604220-4604239 | None:intergenic | 45.0% | |
GATGGTGCAAACTTCAGTGA+TGG | - | chr4_4:4604407-4604426 | Msa0665210:intron | 45.0% | |
!! | TGCAAACTTCAGTGATGGGT+GGG | - | chr4_4:4604412-4604431 | Msa0665210:intron | 45.0% |
GGATGTAAAGGTTGTGGAAG+AGG | - | chr4_4:4604453-4604472 | Msa0665210:intron | 45.0% | |
!! | TCAGATGGTGGAAATGGAAG+AGG | - | chr4_4:4604477-4604496 | Msa0665210:intron | 45.0% |
!! | CAGATGGTGGAAATGGAAGA+GGG | - | chr4_4:4604478-4604497 | Msa0665210:intron | 45.0% |
!! | CCAAGCAAAAGAGCATCACA+AGG | + | chr4_4:4604579-4604598 | None:intergenic | 45.0% |
! | CCTTGTGATGCTCTTTTGCT+TGG | - | chr4_4:4604576-4604595 | Msa0665210:intron | 45.0% |
!!! | AGAGCCATTTTGGCTAATCC+TGG | - | chr4_4:4605565-4605584 | Msa0665210:intron | 45.0% |
TGGGAAACAGAGAAGAATGC+TGG | - | chr4_4:4605625-4605644 | Msa0665210:intron | 45.0% | |
! | TAAGGTGTTAAGGGACAGTG+AGG | + | chr4_4:4606143-4606162 | None:intergenic | 45.0% |
TGGTTGGATAACTAAGGTGG+GGG | + | chr4_4:4606169-4606188 | None:intergenic | 45.0% | |
!! | CAATGGAAGGGTTTTGTCTC+CGG | - | chr4_4:4606280-4606299 | Msa0665210:CDS | 45.0% |
!! | AAATGAAAATAATTAAATTA+AGG | - | chr4_4:4604706-4604725 | Msa0665210:intron | 5.0% |
!! | AATGAAAATAATTAAATTAA+GGG | - | chr4_4:4604707-4604726 | Msa0665210:intron | 5.0% |
!! | GATATTTAATTAAAATAATT+AGG | - | chr4_4:4605255-4605274 | Msa0665210:intron | 5.0% |
!! | AAAAAATAAATAAAGAAATA+TGG | + | chr4_4:4606247-4606266 | None:intergenic | 5.0% |
!! | AAATGAAAATAATTAAATTA+AGG | - | chr4_4:4604706-4604725 | Msa0665210:intron | 5.0% |
!! | AATGAAAATAATTAAATTAA+GGG | - | chr4_4:4604707-4604726 | Msa0665210:intron | 5.0% |
!! | GATATTTAATTAAAATAATT+AGG | - | chr4_4:4605255-4605274 | Msa0665210:intron | 5.0% |
!! | AAAAAATAAATAAAGAAATA+TGG | + | chr4_4:4606247-4606266 | None:intergenic | 5.0% |
! | GTGCAAACTTCAGTGATGGG+TGG | - | chr4_4:4604411-4604430 | Msa0665210:intron | 50.0% |
!! | GCAAACTTCAGTGATGGGTG+GGG | - | chr4_4:4604413-4604432 | Msa0665210:intron | 50.0% |
!! | CAAACTTCAGTGATGGGTGG+GGG | - | chr4_4:4604414-4604433 | Msa0665210:intron | 50.0% |
!! | AGAGGCTCAGATGGTGGAAA+TGG | - | chr4_4:4604471-4604490 | Msa0665210:intron | 50.0% |
! | ATGGTGGAAATGGAAGAGGG+TGG | - | chr4_4:4604481-4604500 | Msa0665210:intron | 50.0% |
CAGCACATCTTGTGCGAGAT+AGG | - | chr4_4:4604997-4605016 | Msa0665210:CDS | 50.0% | |
! | TGGGGGGGTTAAGGTGTTAA+GGG | + | chr4_4:4606152-4606171 | None:intergenic | 50.0% |
TAACTAAGGTGGGGGGGTTA+AGG | + | chr4_4:4606161-4606180 | None:intergenic | 50.0% | |
GTTGGATAACTAAGGTGGGG+GGG | + | chr4_4:4606167-4606186 | None:intergenic | 50.0% | |
GGTTGGATAACTAAGGTGGG+GGG | + | chr4_4:4606168-4606187 | None:intergenic | 50.0% | |
CGGAGACAAAACCCTTCCAT+TGG | + | chr4_4:4606282-4606301 | None:intergenic | 50.0% | |
! | GTGCAAACTTCAGTGATGGG+TGG | - | chr4_4:4604411-4604430 | Msa0665210:intron | 50.0% |
!! | GCAAACTTCAGTGATGGGTG+GGG | - | chr4_4:4604413-4604432 | Msa0665210:intron | 50.0% |
!! | CAAACTTCAGTGATGGGTGG+GGG | - | chr4_4:4604414-4604433 | Msa0665210:intron | 50.0% |
!! | AGAGGCTCAGATGGTGGAAA+TGG | - | chr4_4:4604471-4604490 | Msa0665210:intron | 50.0% |
! | ATGGTGGAAATGGAAGAGGG+TGG | - | chr4_4:4604481-4604500 | Msa0665210:intron | 50.0% |
CAGCACATCTTGTGCGAGAT+AGG | - | chr4_4:4604997-4605016 | Msa0665210:CDS | 50.0% | |
! | TGGGGGGGTTAAGGTGTTAA+GGG | + | chr4_4:4606152-4606171 | None:intergenic | 50.0% |
TAACTAAGGTGGGGGGGTTA+AGG | + | chr4_4:4606161-4606180 | None:intergenic | 50.0% | |
GTTGGATAACTAAGGTGGGG+GGG | + | chr4_4:4606167-4606186 | None:intergenic | 50.0% | |
GGTTGGATAACTAAGGTGGG+GGG | + | chr4_4:4606168-4606187 | None:intergenic | 50.0% | |
CGGAGACAAAACCCTTCCAT+TGG | + | chr4_4:4606282-4606301 | None:intergenic | 50.0% | |
! | GGTGGGGGTGTGAGAAGTAA+TGG | - | chr4_4:4604429-4604448 | Msa0665210:intron | 55.0% |
! | GGGGGTGTGAGAAGTAATGG+TGG | - | chr4_4:4604432-4604451 | Msa0665210:intron | 55.0% |
GGTTGTGGAAGAGGCTCAGA+TGG | - | chr4_4:4604462-4604481 | Msa0665210:intron | 55.0% | |
TGTGGAAGAGGCTCAGATGG+TGG | - | chr4_4:4604465-4604484 | Msa0665210:intron | 55.0% | |
! | GTGGGGGGGTTAAGGTGTTA+AGG | + | chr4_4:4606153-4606172 | None:intergenic | 55.0% |
! | GGTGGGGGTGTGAGAAGTAA+TGG | - | chr4_4:4604429-4604448 | Msa0665210:intron | 55.0% |
! | GGGGGTGTGAGAAGTAATGG+TGG | - | chr4_4:4604432-4604451 | Msa0665210:intron | 55.0% |
GGTTGTGGAAGAGGCTCAGA+TGG | - | chr4_4:4604462-4604481 | Msa0665210:intron | 55.0% | |
TGTGGAAGAGGCTCAGATGG+TGG | - | chr4_4:4604465-4604484 | Msa0665210:intron | 55.0% | |
! | GTGGGGGGGTTAAGGTGTTA+AGG | + | chr4_4:4606153-4606172 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 4604115 | 4606518 | 4604115 | ID=Msa0665210;Name=Msa0665210 |
chr4_4 | mRNA | 4604115 | 4606518 | 4604115 | ID=Msa0665210-mRNA-1;Parent=Msa0665210;Name=Msa0665210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47|1|1|1|1|1|3|43|250 |
chr4_4 | exon | 4604115 | 4604275 | 4604115 | ID=Msa0665210-mRNA-1:exon:1558;Parent=Msa0665210-mRNA-1 |
chr4_4 | exon | 4604935 | 4605107 | 4604935 | ID=Msa0665210-mRNA-1:exon:1557;Parent=Msa0665210-mRNA-1 |
chr4_4 | exon | 4606010 | 4606518 | 4606010 | ID=Msa0665210-mRNA-1:exon:1556;Parent=Msa0665210-mRNA-1 |
chr4_4 | five_prime_UTR | 4606472 | 4606518 | 4606472 | ID=Msa0665210-mRNA-1:five_prime_utr;Parent=Msa0665210-mRNA-1 |
chr4_4 | CDS | 4606010 | 4606471 | 4606010 | ID=Msa0665210-mRNA-1:cds;Parent=Msa0665210-mRNA-1 |
chr4_4 | CDS | 4604935 | 4605107 | 4604935 | ID=Msa0665210-mRNA-1:cds;Parent=Msa0665210-mRNA-1 |
chr4_4 | CDS | 4604158 | 4604275 | 4604158 | ID=Msa0665210-mRNA-1:cds;Parent=Msa0665210-mRNA-1 |
chr4_4 | three_prime_UTR | 4604115 | 4604157 | 4604115 | ID=Msa0665210-mRNA-1:three_prime_utr;Parent=Msa0665210-mRNA-1 |
Gene Sequence |
Protein sequence |