Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530490 | XP_003604384.1 | 91.667 | 240 | 17 | 1 | 1 | 240 | 1 | 237 | 2.24e-144 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530490 | G7JGY8 | 91.667 | 240 | 17 | 1 | 1 | 240 | 1 | 237 | 1.07e-144 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0530480 | Msa0530490 | 0.956153 | 5.756971e-114 | -8.615850e-47 |
| Msa0530490 | Msa0587350 | 0.829962 | 3.837301e-55 | -8.615850e-47 |
| Msa0530490 | Msa0627200 | 0.929179 | 1.006721e-92 | -8.615850e-47 |
| Msa0530490 | Msa0665210 | 0.838045 | 3.631088e-57 | -8.615850e-47 |
| Msa0530490 | Msa1225800 | 0.809493 | 1.841517e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530490 | MtrunA17_Chr4g0003311 | 93.548 | 155 | 7 | 1 | 1 | 155 | 1 | 152 | 9.16e-85 | 249 |
| Msa0530490 | MtrunA17_Chr2g0333081 | 50.598 | 251 | 110 | 4 | 1 | 238 | 1 | 250 | 1.86e-59 | 189 |
| Msa0530490 | MtrunA17_Chr4g0063891 | 39.231 | 260 | 119 | 6 | 1 | 223 | 1 | 258 | 4.81e-47 | 157 |
| Msa0530490 | MtrunA17_Chr5g0411051 | 52.941 | 102 | 48 | 0 | 124 | 225 | 119 | 220 | 1.58e-33 | 121 |
| Msa0530490 | MtrunA17_Chr4g0003301 | 76.923 | 65 | 15 | 0 | 154 | 218 | 6 | 70 | 7.37e-33 | 114 |
| Msa0530490 | MtrunA17_Chr7g0262061 | 43.443 | 122 | 65 | 2 | 110 | 230 | 211 | 329 | 1.03e-28 | 111 |
| Msa0530490 | MtrunA17_Chr7g0262541 | 42.857 | 119 | 65 | 1 | 115 | 233 | 228 | 343 | 3.62e-28 | 109 |
| Msa0530490 | MtrunA17_Chr1g0186111 | 35.135 | 148 | 95 | 1 | 84 | 231 | 86 | 232 | 4.01e-22 | 93.6 |
| Msa0530490 | MtrunA17_Chr1g0186111 | 39.091 | 110 | 66 | 1 | 121 | 229 | 266 | 375 | 6.50e-18 | 81.6 |
| Msa0530490 | MtrunA17_Chr3g0104511 | 35.577 | 104 | 67 | 0 | 126 | 229 | 398 | 501 | 5.62e-17 | 79.7 |
| Msa0530490 | MtrunA17_Chr5g0436741 | 32.110 | 109 | 73 | 1 | 118 | 225 | 288 | 396 | 1.11e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530490 | AT5G20190.1 | 31.541 | 279 | 112 | 6 | 1 | 225 | 1 | 254 | 1.23e-36 | 130 |
| Msa0530490 | AT4G32340.1 | 57.000 | 100 | 42 | 1 | 127 | 225 | 110 | 209 | 3.74e-35 | 125 |
| Msa0530490 | AT4G17940.1 | 51.961 | 102 | 49 | 0 | 124 | 225 | 147 | 248 | 6.81e-33 | 120 |
| Msa0530490 | AT1G04530.1 | 41.053 | 95 | 55 | 1 | 130 | 224 | 124 | 217 | 8.94e-19 | 84.0 |
| Msa0530490 | AT2G29670.1 | 36.893 | 103 | 65 | 0 | 123 | 225 | 416 | 518 | 1.56e-17 | 81.6 |
| Msa0530490 | AT2G29670.2 | 36.893 | 103 | 65 | 0 | 123 | 225 | 416 | 518 | 1.56e-17 | 81.6 |
| Msa0530490 | AT1G07280.3 | 34.615 | 104 | 68 | 0 | 126 | 229 | 434 | 537 | 8.54e-17 | 79.3 |
| Msa0530490 | AT1G07280.1 | 34.615 | 104 | 68 | 0 | 126 | 229 | 434 | 537 | 8.54e-17 | 79.3 |
| Msa0530490 | AT1G07280.2 | 34.615 | 104 | 68 | 0 | 126 | 229 | 434 | 537 | 8.54e-17 | 79.3 |
| Msa0530490 | AT3G47080.1 | 33.654 | 104 | 69 | 0 | 126 | 229 | 399 | 502 | 8.99e-13 | 67.8 |
Find 45 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTATGCAGAATTAATA+TGG | 0.211193 | 4_1:-4559502 | Msa0530490:CDS |
| GTATCTACAAAGAGCGATTT+TGG | 0.214301 | 4_1:-4559552 | Msa0530490:CDS |
| CTTAAAACTGATATTGTTCT+AGG | 0.215607 | 4_1:+4561828 | None:intergenic |
| CCATATTAATTCTGCATAGA+TGG | 0.249294 | 4_1:+4559502 | None:intergenic |
| GAGGACTCTTTGGAATTATA+AGG | 0.297415 | 4_1:+4561879 | None:intergenic |
| TTCAAAGTGACTCAGATAAT+TGG | 0.306496 | 4_1:-4559430 | Msa0530490:intron |
| CTTCGTATGCAAAATTCCTT+TGG | 0.322965 | 4_1:-4558211 | Msa0530490:CDS |
| AAGCTCAAGAGAGGACTCTT+TGG | 0.327488 | 4_1:+4561869 | None:intergenic |
| TTACTACATGGCACAAGAAA+TGG | 0.383185 | 4_1:+4561750 | None:intergenic |
| GGTAACAATGAACTTAGAAT+TGG | 0.408424 | 4_1:+4561900 | None:intergenic |
| ACATGTGATCCGATTTAATT+CGG | 0.423808 | 4_1:+4558159 | None:intergenic |
| GGTGTGCTTCTATCATGTTT+TGG | 0.426220 | 4_1:+4561532 | None:intergenic |
| AGAGGCTCAGATGGTGGAAA+TGG | 0.433784 | 4_1:-4561615 | Msa0530490:CDS |
| GAAATAATCATGGTAGAGAT+AGG | 0.441347 | 4_1:-4561569 | Msa0530490:CDS |
| TAAAGACTACCGAATTAAAT+CGG | 0.445048 | 4_1:-4558168 | Msa0530490:CDS |
| TTCGTATGCAAAATTCCTTT+GGG | 0.445129 | 4_1:-4558210 | Msa0530490:CDS |
| GCAAACTTCAGTGAAGGGAG+GGG | 0.456243 | 4_1:-4561673 | Msa0530490:CDS |
| TTTAATGAAGGAAATAATCA+TGG | 0.466976 | 4_1:-4561579 | Msa0530490:CDS |
| CAAAGTGAAAGAGGCTAAGA+TGG | 0.477457 | 4_1:-4561697 | Msa0530490:CDS |
| AATAATATGCAGCTATGTCC+TGG | 0.477958 | 4_1:-4558234 | Msa0530490:intron |
| CGAAAGAAACAAAGTGAAAG+AGG | 0.478819 | 4_1:-4561706 | Msa0530490:CDS |
| CATCTATGCAGAATTAATAT+GGG | 0.481359 | 4_1:-4559501 | Msa0530490:CDS |
| TTGAAGGTCTAACTTGGCTA+AGG | 0.496888 | 4_1:+4561794 | None:intergenic |
| GGATGTAAAGGTGGTGGAAG+AGG | 0.508579 | 4_1:-4561633 | Msa0530490:CDS |
| TCAGATGGTGGAAATGGAAG+AGG | 0.527871 | 4_1:-4561609 | Msa0530490:CDS |
| TGCAAACTTCAGTGAAGGGA+GGG | 0.537406 | 4_1:-4561674 | Msa0530490:CDS |
| AGAAGTAATGGTGGATGTAA+AGG | 0.542026 | 4_1:-4561645 | Msa0530490:CDS |
| GGTGGTGGAAGAGGCTCAGA+TGG | 0.550677 | 4_1:-4561624 | Msa0530490:CDS |
| CAAACTTCAGTGAAGGGAGG+GGG | 0.562041 | 4_1:-4561672 | Msa0530490:CDS |
| TGGGAAACAGAGAAGAATGC+TGG | 0.574769 | 4_1:-4559482 | Msa0530490:CDS |
| GTACTTAGAACATTACTACA+TGG | 0.576469 | 4_1:+4561738 | None:intergenic |
| GATGGTGCAAACTTCAGTGA+AGG | 0.585860 | 4_1:-4561679 | Msa0530490:CDS |
| AATGGTGGATGTAAAGGTGG+TGG | 0.586769 | 4_1:-4561639 | Msa0530490:CDS |
| CCAAGCAAAAGAGCATCACA+AGG | 0.607278 | 4_1:+4561510 | None:intergenic |
| GGTGGAAGAGGCTCAGATGG+TGG | 0.608176 | 4_1:-4561621 | Msa0530490:CDS |
| GTGCAAACTTCAGTGAAGGG+AGG | 0.614647 | 4_1:-4561675 | Msa0530490:CDS |
| CAGATGGTGGAAATGGAAGA+GGG | 0.618945 | 4_1:-4561608 | Msa0530490:CDS |
| ATGGTGCAAACTTCAGTGAA+GGG | 0.622046 | 4_1:-4561678 | Msa0530490:CDS |
| AGTATGTTCAAGCTCAAGAG+AGG | 0.623493 | 4_1:+4561860 | None:intergenic |
| AGTAATGGTGGATGTAAAGG+TGG | 0.627702 | 4_1:-4561642 | Msa0530490:CDS |
| ATGGTGGAAATGGAAGAGGG+TGG | 0.650938 | 4_1:-4561605 | Msa0530490:CDS |
| GGTCTAACTTGGCTAAGGTG+TGG | 0.652832 | 4_1:+4561799 | None:intergenic |
| TGAACTTAGAATTGGTGCAG+AGG | 0.666303 | 4_1:+4561908 | None:intergenic |
| GACATAATATGACCATCACC+AGG | 0.669196 | 4_1:+4559524 | None:intergenic |
| CAAGCAAAAGAGCATCACAA+GGG | 0.724452 | 4_1:+4561511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTATTTTTTTGCA+TGG | - | chr4_1:4558685-4558704 | Msa0530490:intron | 10.0% |
| !! | AAAAGAAAATAATGAAATTA+AGG | - | chr4_1:4558749-4558768 | Msa0530490:intron | 10.0% |
| !! | AAAGAAAATAATGAAATTAA+GGG | - | chr4_1:4558750-4558769 | Msa0530490:intron | 10.0% |
| !! | TTTGAAAATAAAACTAAAAA+TGG | + | chr4_1:4558794-4558813 | None:intergenic | 10.0% |
| !!! | ATAAGTAAATTTTTTTTGTA+GGG | + | chr4_1:4559195-4559214 | None:intergenic | 10.0% |
| !!! | TATAAGTAAATTTTTTTTGT+AGG | + | chr4_1:4559196-4559215 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr4_1:4559256-4559275 | None:intergenic | 10.0% |
| !! | GATATTTAATGAAAATAATT+AGG | - | chr4_1:4559728-4559747 | Msa0530490:intron | 10.0% |
| !!! | CTATATAAATGTATTATTTT+TGG | + | chr4_1:4561049-4561068 | None:intergenic | 10.0% |
| !! | TTCATAGTTATTAAATTATT+GGG | - | chr4_1:4561163-4561182 | Msa0530490:intron | 10.0% |
| !! | TAATGTTAATAAATTAACAT+TGG | + | chr4_1:4561500-4561519 | None:intergenic | 10.0% |
| !! | ATATTAAGGTAATATAAAAT+TGG | + | chr4_1:4561596-4561615 | None:intergenic | 10.0% |
| !!! | ATTTTATATTACCTTAATAT+AGG | - | chr4_1:4561596-4561615 | Msa0530490:CDS | 10.0% |
| !!! | TTTTATATTACCTTAATATA+GGG | - | chr4_1:4561597-4561616 | Msa0530490:CDS | 10.0% |
| !! | AAATAAAAATAAATAGAGAT+GGG | + | chr4_1:4561806-4561825 | None:intergenic | 10.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr4_1:4559578-4559597 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr4_1:4559227-4559246 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr4_1:4559228-4559247 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr4_1:4559387-4559406 | Msa0530490:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr4_1:4559422-4559441 | Msa0530490:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr4_1:4559506-4559525 | Msa0530490:CDS | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr4_1:4559578-4559597 | Msa0530490:CDS | 15.0% |
| !! | TATAGAGATGATATATTATA+GGG | + | chr4_1:4559652-4559671 | None:intergenic | 15.0% |
| !! | TTATAGAGATGATATATTAT+AGG | + | chr4_1:4559653-4559672 | None:intergenic | 15.0% |
| !!! | TATCTTTAAAAATTCTCTTT+GGG | + | chr4_1:4560070-4560089 | None:intergenic | 15.0% |
| !!! | ATATCTTTAAAAATTCTCTT+TGG | + | chr4_1:4560071-4560090 | None:intergenic | 15.0% |
| !!! | ATATTTTGACTATCTTTTTA+AGG | - | chr4_1:4560739-4560758 | Msa0530490:intron | 15.0% |
| !! | GTTCATAGTTATTAAATTAT+TGG | - | chr4_1:4561162-4561181 | Msa0530490:intron | 15.0% |
| !! | TCATATTATATATAACATCA+TGG | + | chr4_1:4561236-4561255 | None:intergenic | 15.0% |
| !! | GAAATAAAAATAAATAGAGA+TGG | + | chr4_1:4561807-4561826 | None:intergenic | 15.0% |
| !! | TTTAATGAAGGAAATAATCA+TGG | - | chr4_1:4558548-4558567 | Msa0530490:intron | 20.0% |
| !!! | AAATTATGGAAAGTTTTTGA+AGG | - | chr4_1:4558640-4558659 | Msa0530490:intron | 20.0% |
| !! | GTTGTATAATATATTAACAC+AGG | - | chr4_1:4558996-4559015 | Msa0530490:intron | 20.0% |
| !! | CATTGAAGGTTTATAATATA+GGG | - | chr4_1:4559092-4559111 | Msa0530490:intron | 20.0% |
| !!! | TATAGGGTTAATTATGTTTT+TGG | - | chr4_1:4559108-4559127 | Msa0530490:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4_1:4559476-4559495 | None:intergenic | 20.0% |
| !!! | TATAGGGTTAATTATGTTTT+TGG | + | chr4_1:4559108-4559127 | None:intergenic | 20.0% |
| !! | TTAATCTTTATGTGTCTTAA+TGG | + | chr4_1:4559707-4559726 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAAATGACTTTTT+AGG | - | chr4_1:4559807-4559826 | Msa0530490:intron | 20.0% |
| !! | CATTGAATAATTAATGTATC+CGG | - | chr4_1:4559832-4559851 | Msa0530490:intron | 20.0% |
| !!! | ATCTTTAAAAATTCTCTTTG+GGG | + | chr4_1:4560069-4560088 | None:intergenic | 20.0% |
| !! | ATTTATAACTTATGAATCAC+CGG | + | chr4_1:4560854-4560873 | None:intergenic | 20.0% |
| !!! | TCTTTTATGGTGTTTATTTT+GGG | + | chr4_1:4560903-4560922 | None:intergenic | 20.0% |
| !!! | ATAATTTAAGGTGTCTTTTA+TGG | + | chr4_1:4560916-4560935 | None:intergenic | 20.0% |
| !! | TTAATAACTATGAACTTAGT+GGG | + | chr4_1:4561157-4561176 | None:intergenic | 20.0% |
| !! | TTTAATAACTATGAACTTAG+TGG | + | chr4_1:4561158-4561177 | None:intergenic | 20.0% |
| !!! | TTTTGATGTATTATAAAACG+TGG | - | chr4_1:4561191-4561210 | Msa0530490:intron | 20.0% |
| !! | AATAAAAAGTGAGAAAAACA+AGG | + | chr4_1:4561303-4561322 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTCACTTTTTAT+TGG | - | chr4_1:4561302-4561321 | Msa0530490:intron | 20.0% |
| !! | ATATATAATGAGTCAAAGTT+TGG | - | chr4_1:4561445-4561464 | Msa0530490:intron | 20.0% |
| !! | TAAGGTAATATAAAATTGGT+TGG | + | chr4_1:4561592-4561611 | None:intergenic | 20.0% |
| ! | CTTAAAACTGATATTGTTCT+AGG | + | chr4_1:4558302-4558321 | None:intergenic | 25.0% |
| !! | TTAATTTTCTAACAGTGAGA+TGG | - | chr4_1:4558825-4558844 | Msa0530490:intron | 25.0% |
| ! | GCATTGAAGGTTTATAATAT+AGG | - | chr4_1:4559091-4559110 | Msa0530490:intron | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr4_1:4559452-4559471 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr4_1:4559517-4559536 | Msa0530490:CDS | 25.0% |
| !!! | TGAGTGCAGAAATTTTTTTT+AGG | - | chr4_1:4559548-4559567 | Msa0530490:CDS | 25.0% |
| !!! | GAGTGCAGAAATTTTTTTTA+GGG | - | chr4_1:4559549-4559568 | Msa0530490:CDS | 25.0% |
| ! | ATGTATCTAACCAATAAATG+TGG | + | chr4_1:4559858-4559877 | None:intergenic | 25.0% |
| !! | TTTTGTGTCAAATAGTATAG+TGG | - | chr4_1:4560108-4560127 | Msa0530490:intron | 25.0% |
| ! | TCATGAAAGTTGTCTATTAA+TGG | + | chr4_1:4560373-4560392 | None:intergenic | 25.0% |
| !!! | TCATTTTCCTCTATTTCTAT+TGG | - | chr4_1:4560398-4560417 | Msa0530490:intron | 25.0% |
| !! | TTTTCAACCAATAGAAATAG+AGG | + | chr4_1:4560408-4560427 | None:intergenic | 25.0% |
| !! | ATCATTTCTCTTTTGCAAAT+AGG | - | chr4_1:4560524-4560543 | Msa0530490:intron | 25.0% |
| ! | CATCTATGCAGAATTAATAT+GGG | - | chr4_1:4560626-4560645 | Msa0530490:intron | 25.0% |
| ! | AAATTAAAGACGTCGTATAT+AGG | - | chr4_1:4560870-4560889 | Msa0530490:intron | 25.0% |
| !! | GTCTTTTATGGTGTTTATTT+TGG | + | chr4_1:4560904-4560923 | None:intergenic | 25.0% |
| ! | ACAAAGTGCACAATAATTTA+AGG | + | chr4_1:4560928-4560947 | None:intergenic | 25.0% |
| ! | TATATATAACATCATGGAGA+AGG | + | chr4_1:4561230-4561249 | None:intergenic | 25.0% |
| !! | TTTTTATTGGTCCAAAACAA+TGG | - | chr4_1:4561315-4561334 | Msa0530490:intron | 25.0% |
| ! | GTCTAAAAATTGTCAAAAAG+TGG | - | chr4_1:4561395-4561414 | Msa0530490:intron | 25.0% |
| ! | TATTAACATTATCTTGAGAG+TGG | - | chr4_1:4561509-4561528 | Msa0530490:CDS | 25.0% |
| ! | ATTAACATTATCTTGAGAGT+GGG | - | chr4_1:4561510-4561529 | Msa0530490:CDS | 25.0% |
| !! | TATTTCTGTTTACCAATGAA+AGG | - | chr4_1:4561821-4561840 | Msa0530490:CDS | 25.0% |
| ! | ATTTCTGTTTACCAATGAAA+GGG | - | chr4_1:4561822-4561841 | Msa0530490:CDS | 25.0% |
| ! | AAGTATCAACAAGATAAATC+CGG | + | chr4_1:4561856-4561875 | None:intergenic | 25.0% |
| ! | TAAAGACTACCGAATTAAAT+CGG | - | chr4_1:4561959-4561978 | Msa0530490:five_prime_UTR | 25.0% |
| GGTAACAATGAACTTAGAAT+TGG | + | chr4_1:4558230-4558249 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTGAAGGTCTAACT+TGG | + | chr4_1:4558342-4558361 | None:intergenic | 30.0% |
| !! | TAGGACTTGATAAGTTTTGA+AGG | + | chr4_1:4558352-4558371 | None:intergenic | 30.0% |
| GTACTTAGAACATTACTACA+TGG | + | chr4_1:4558392-4558411 | None:intergenic | 30.0% | |
| GAAATAATCATGGTAGAGAT+AGG | - | chr4_1:4558558-4558577 | Msa0530490:intron | 30.0% | |
| !! | TTATGGAAAGTTTTTGAAGG+AGG | - | chr4_1:4558643-4558662 | Msa0530490:intron | 30.0% |
| ACACTTAAAGCAATGTTACT+TGG | - | chr4_1:4559023-4559042 | Msa0530490:intron | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | chr4_1:4559593-4559612 | None:intergenic | 30.0% | |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr4_1:4559425-4559444 | Msa0530490:intron | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr4_1:4559593-4559612 | Msa0530490:intron | 30.0% | |
| TGCTTATATATGTGATCAGA+GGG | + | chr4_1:4559793-4559812 | None:intergenic | 30.0% | |
| TTGCTTATATATGTGATCAG+AGG | + | chr4_1:4559794-4559813 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTATATGTGTGAC+CGG | - | chr4_1:4559906-4559925 | Msa0530490:intron | 30.0% |
| ! | GAGCTTACACATTTTAAATG+TGG | - | chr4_1:4560134-4560153 | Msa0530490:intron | 30.0% |
| ACAATGCATATTATATGCAG+GGG | + | chr4_1:4560191-4560210 | None:intergenic | 30.0% | |
| GACAATGCATATTATATGCA+GGG | + | chr4_1:4560192-4560211 | None:intergenic | 30.0% | |
| AGACAATGCATATTATATGC+AGG | + | chr4_1:4560193-4560212 | None:intergenic | 30.0% | |
| AATCAGAACAACGTGAAATA+CGG | + | chr4_1:4560317-4560336 | None:intergenic | 30.0% | |
| GTCAAAAAGTTGTTGACAAA+TGG | - | chr4_1:4560491-4560510 | Msa0530490:intron | 30.0% | |
| CCATATTAATTCTGCATAGA+TGG | + | chr4_1:4560628-4560647 | None:intergenic | 30.0% | |
| CCATCTATGCAGAATTAATA+TGG | - | chr4_1:4560625-4560644 | Msa0530490:intron | 30.0% | |
| TTCAAAGTGACTCAGATAAT+TGG | - | chr4_1:4560697-4560716 | Msa0530490:intron | 30.0% | |
| ATGTATTATAAAACGTGGCA+AGG | - | chr4_1:4561196-4561215 | Msa0530490:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr4_1:4561277-4561296 | None:intergenic | 30.0% | |
| ! | TTTTTCTCTCTCCATTGTTT+TGG | + | chr4_1:4561329-4561348 | None:intergenic | 30.0% |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr4_1:4561328-4561347 | Msa0530490:intron | 30.0% | |
| TAAAATTGGTTGGATGACTA+AGG | + | chr4_1:4561582-4561601 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | - | chr4_1:4561710-4561729 | Msa0530490:CDS | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | + | chr4_1:4561716-4561735 | None:intergenic | 30.0% |
| TTCGTATGCAAAATTCCTTT+GGG | - | chr4_1:4561917-4561936 | Msa0530490:CDS | 30.0% | |
| ACATGTGATCCGATTTAATT+CGG | + | chr4_1:4561971-4561990 | None:intergenic | 30.0% | |
| !! | GAGGACTCTTTGGAATTATA+AGG | + | chr4_1:4558251-4558270 | None:intergenic | 35.0% |
| !!! | GGCACAAGAAATGGTTTTTT+AGG | + | chr4_1:4558371-4558390 | None:intergenic | 35.0% |
| TTACTACATGGCACAAGAAA+TGG | + | chr4_1:4558380-4558399 | None:intergenic | 35.0% | |
| CGAAAGAAACAAAGTGAAAG+AGG | - | chr4_1:4558421-4558440 | Msa0530490:intron | 35.0% | |
| !! | AGAAGTAATGGTGGATGTAA+AGG | - | chr4_1:4558482-4558501 | Msa0530490:intron | 35.0% |
| !! | AGAGGGTGGAATTTTAATGA+AGG | - | chr4_1:4558536-4558555 | Msa0530490:intron | 35.0% |
| ! | GCTCTTTTGCTTGGAAATTA+TGG | - | chr4_1:4558626-4558645 | Msa0530490:intron | 35.0% |
| TTTGAAGGAGGTAATGATCA+TGG | - | chr4_1:4558655-4558674 | Msa0530490:intron | 35.0% | |
| AGTTGTGATAAAGAGAAGCA+TGG | - | chr4_1:4558866-4558885 | Msa0530490:intron | 35.0% | |
| GGATCCAAAAGTCTATCAAA+CGG | - | chr4_1:4558891-4558910 | Msa0530490:intron | 35.0% | |
| AAAACTCAAAGTCGCATTGA+AGG | - | chr4_1:4559078-4559097 | Msa0530490:intron | 35.0% | |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr4_1:4559609-4559628 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr4_1:4559608-4559627 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr4_1:4559608-4559627 | Msa0530490:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr4_1:4559609-4559628 | Msa0530490:intron | 35.0% |
| ATCTAACCAATAAATGTGGC+CGG | + | chr4_1:4559854-4559873 | None:intergenic | 35.0% | |
| ! | AAATTTTGAACTACTCCCTC+CGG | + | chr4_1:4559928-4559947 | None:intergenic | 35.0% |
| GTGTCAAATAGTATAGTGGT+TGG | - | chr4_1:4560112-4560131 | Msa0530490:intron | 35.0% | |
| ! | ATGTGGAGAAATGAAGTGTT+AGG | - | chr4_1:4560151-4560170 | Msa0530490:intron | 35.0% |
| ! | TGTGGAGAAATGAAGTGTTA+GGG | - | chr4_1:4560152-4560171 | Msa0530490:intron | 35.0% |
| CTCTATGAGTTTAACTCAGT+TGG | + | chr4_1:4560219-4560238 | None:intergenic | 35.0% | |
| ! | CTCTTTTGCAAATAGGTTTG+TGG | - | chr4_1:4560531-4560550 | Msa0530490:intron | 35.0% |
| ! | GTATCTACAAAGAGCGATTT+TGG | - | chr4_1:4560575-4560594 | Msa0530490:intron | 35.0% |
| ATGTAGCAGAGCTCAATTAT+TGG | - | chr4_1:4560767-4560786 | Msa0530490:intron | 35.0% | |
| TGTAGCAGAGCTCAATTATT+GGG | - | chr4_1:4560768-4560787 | Msa0530490:intron | 35.0% | |
| ! | TATTTAAGACGAACAGAGAC+CGG | - | chr4_1:4560832-4560851 | Msa0530490:intron | 35.0% |
| TTAAAGACGTCGTATATAGG+CGG | - | chr4_1:4560873-4560892 | Msa0530490:intron | 35.0% | |
| AGAGAGAAAAAGGAAAAGAG+AGG | - | chr4_1:4561338-4561357 | Msa0530490:intron | 35.0% | |
| TGTAGCAAGACCCTATATTA+AGG | + | chr4_1:4561610-4561629 | None:intergenic | 35.0% | |
| CTAAAAGACACCTTCACAAA+AGG | - | chr4_1:4561765-4561784 | Msa0530490:CDS | 35.0% | |
| AATAATATGCAGCTATGTCC+TGG | - | chr4_1:4561893-4561912 | Msa0530490:CDS | 35.0% | |
| CTTCGTATGCAAAATTCCTT+TGG | - | chr4_1:4561916-4561935 | Msa0530490:CDS | 35.0% | |
| TGAACTTAGAATTGGTGCAG+AGG | + | chr4_1:4558222-4558241 | None:intergenic | 40.0% | |
| AGTATGTTCAAGCTCAAGAG+AGG | + | chr4_1:4558270-4558289 | None:intergenic | 40.0% | |
| TTGAAGGTCTAACTTGGCTA+AGG | + | chr4_1:4558336-4558355 | None:intergenic | 40.0% | |
| CAAAGTGAAAGAGGCTAAGA+TGG | - | chr4_1:4558430-4558449 | Msa0530490:intron | 40.0% | |
| ATGGTGCAAACTTCAGTGAA+GGG | - | chr4_1:4558449-4558468 | Msa0530490:intron | 40.0% | |
| !! | AGTAATGGTGGATGTAAAGG+TGG | - | chr4_1:4558485-4558504 | Msa0530490:intron | 40.0% |
| ! | GGTGTGCTTCTATCATGTTT+TGG | + | chr4_1:4558598-4558617 | None:intergenic | 40.0% |
| !! | CAAGCAAAAGAGCATCACAA+GGG | + | chr4_1:4558619-4558638 | None:intergenic | 40.0% |
| ! | GTGATAAAGAGAAGCATGGT+TGG | - | chr4_1:4558870-4558889 | Msa0530490:intron | 40.0% |
| TCCAAAAGTCTATCAAACGG+AGG | - | chr4_1:4558894-4558913 | Msa0530490:intron | 40.0% | |
| ATGTATCCGGCCACATTTAT+TGG | - | chr4_1:4559845-4559864 | Msa0530490:intron | 40.0% | |
| ACTAATGAGAGAGTGATGCA+TGG | - | chr4_1:4560007-4560026 | Msa0530490:intron | 40.0% | |
| ! | TATCTACAAGGGGAAAGCAT+GGG | + | chr4_1:4560044-4560063 | None:intergenic | 40.0% |
| ! | TCTTTGGGGACTATCTACAA+GGG | + | chr4_1:4560055-4560074 | None:intergenic | 40.0% |
| !!! | ATTTTGGCTAATCCTGGTGA+TGG | - | chr4_1:4560591-4560610 | Msa0530490:intron | 40.0% |
| GACATAATATGACCATCACC+AGG | + | chr4_1:4560606-4560625 | None:intergenic | 40.0% | |
| TTGGTTGGATGACTAAGGTA+GGG | + | chr4_1:4561577-4561596 | None:intergenic | 40.0% | |
| ATTGGTTGGATGACTAAGGT+AGG | + | chr4_1:4561578-4561597 | None:intergenic | 40.0% | |
| TGCTAAAAGACACCACCAAA+GGG | + | chr4_1:4561638-4561657 | None:intergenic | 40.0% | |
| TTGCTAAAAGACACCACCAA+AGG | + | chr4_1:4561639-4561658 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAGTCACACCTCA+AGG | - | chr4_1:4561650-4561669 | Msa0530490:CDS | 40.0% |
| AAAGTGCAAATCACACCTTG+AGG | + | chr4_1:4561668-4561687 | None:intergenic | 40.0% | |
| ! | CTAGAAGACACCTTTTGTGA+AGG | + | chr4_1:4561778-4561797 | None:intergenic | 40.0% |
| ! | CTTCATTTTCAGCATCCCAA+AGG | + | chr4_1:4561935-4561954 | None:intergenic | 40.0% |
| AAGCTCAAGAGAGGACTCTT+TGG | + | chr4_1:4558261-4558280 | None:intergenic | 45.0% | |
| GATGGTGCAAACTTCAGTGA+AGG | - | chr4_1:4558448-4558467 | Msa0530490:intron | 45.0% | |
| TGCAAACTTCAGTGAAGGGA+GGG | - | chr4_1:4558453-4558472 | Msa0530490:intron | 45.0% | |
| !! | AATGGTGGATGTAAAGGTGG+TGG | - | chr4_1:4558488-4558507 | Msa0530490:intron | 45.0% |
| !! | TCAGATGGTGGAAATGGAAG+AGG | - | chr4_1:4558518-4558537 | Msa0530490:intron | 45.0% |
| !! | CAGATGGTGGAAATGGAAGA+GGG | - | chr4_1:4558519-4558538 | Msa0530490:intron | 45.0% |
| !! | CCAAGCAAAAGAGCATCACA+AGG | + | chr4_1:4558620-4558639 | None:intergenic | 45.0% |
| ! | CCTTGTGATGCTCTTTTGCT+TGG | - | chr4_1:4558617-4558636 | Msa0530490:intron | 45.0% |
| ! | GCCTCCGTTTGATAGACTTT+TGG | + | chr4_1:4558898-4558917 | None:intergenic | 45.0% |
| TTGCTTATATGTGTGACCGG+AGG | - | chr4_1:4559909-4559928 | Msa0530490:intron | 45.0% | |
| TGCTTATATGTGTGACCGGA+GGG | - | chr4_1:4559910-4559929 | Msa0530490:intron | 45.0% | |
| AATGAGAGAGTGATGCATGG+AGG | - | chr4_1:4560010-4560029 | Msa0530490:intron | 45.0% | |
| ATGAGAGAGTGATGCATGGA+GGG | - | chr4_1:4560011-4560030 | Msa0530490:intron | 45.0% | |
| CTATCTACAAGGGGAAAGCA+TGG | + | chr4_1:4560045-4560064 | None:intergenic | 45.0% | |
| ! | CTTTGGGGACTATCTACAAG+GGG | + | chr4_1:4560054-4560073 | None:intergenic | 45.0% |
| ! | CTCTTTGGGGACTATCTACA+AGG | + | chr4_1:4560056-4560075 | None:intergenic | 45.0% |
| !!! | AGAGCGATTTTGGCTAATCC+TGG | - | chr4_1:4560585-4560604 | Msa0530490:intron | 45.0% |
| TGGGAAACAGAGAAGAATGC+TGG | - | chr4_1:4560645-4560664 | Msa0530490:intron | 45.0% | |
| !! | TAAGGTGTTGTGGGACAATG+AGG | + | chr4_1:4561550-4561569 | None:intergenic | 45.0% |
| TGGTTGGATGACTAAGGTAG+GGG | + | chr4_1:4561576-4561595 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr4_1:4561635-4561654 | None:intergenic | 45.0% | |
| ! | CAATGAAAGGGTCTTGTCTC+CGG | - | chr4_1:4561834-4561853 | Msa0530490:CDS | 45.0% |
| ! | GGAATTTTGCATACGAAGCC+AGG | + | chr4_1:4561914-4561933 | None:intergenic | 45.0% |
| !! | TATCATATAAATATTTATAT+AGG | - | chr4_1:4561018-4561037 | Msa0530490:intron | 5.0% |
| !! | ATATATTATTACATTTATAT+AGG | - | chr4_1:4561108-4561127 | Msa0530490:intron | 5.0% |
| GGTCTAACTTGGCTAAGGTG+TGG | + | chr4_1:4558331-4558350 | None:intergenic | 50.0% | |
| GTGCAAACTTCAGTGAAGGG+AGG | - | chr4_1:4558452-4558471 | Msa0530490:intron | 50.0% | |
| GCAAACTTCAGTGAAGGGAG+GGG | - | chr4_1:4558454-4558473 | Msa0530490:intron | 50.0% | |
| CAAACTTCAGTGAAGGGAGG+GGG | - | chr4_1:4558455-4558474 | Msa0530490:intron | 50.0% | |
| !! | GGATGTAAAGGTGGTGGAAG+AGG | - | chr4_1:4558494-4558513 | Msa0530490:intron | 50.0% |
| !! | AGAGGCTCAGATGGTGGAAA+TGG | - | chr4_1:4558512-4558531 | Msa0530490:intron | 50.0% |
| ! | ATGGTGGAAATGGAAGAGGG+TGG | - | chr4_1:4558522-4558541 | Msa0530490:intron | 50.0% |
| TGAGAGAGTGATGCATGGAG+GGG | - | chr4_1:4560012-4560031 | Msa0530490:intron | 50.0% | |
| !! | TAGGGGGGTTAAGGTGTTGT+GGG | + | chr4_1:4561559-4561578 | None:intergenic | 50.0% |
| TGACTAAGGTAGGGGGGTTA+AGG | + | chr4_1:4561568-4561587 | None:intergenic | 50.0% | |
| GTTGGATGACTAAGGTAGGG+GGG | + | chr4_1:4561574-4561593 | None:intergenic | 50.0% | |
| GGTTGGATGACTAAGGTAGG+GGG | + | chr4_1:4561575-4561594 | None:intergenic | 50.0% | |
| TCTTGCTACAAGCCACCCTT+TGG | - | chr4_1:4561620-4561639 | Msa0530490:CDS | 50.0% | |
| CGGAGACAAGACCCTTTCAT+TGG | + | chr4_1:4561836-4561855 | None:intergenic | 50.0% | |
| ! | GGAGGGGGTGTGAGAAGTAA+TGG | - | chr4_1:4558470-4558489 | Msa0530490:intron | 55.0% |
| ! | GGGGGTGTGAGAAGTAATGG+TGG | - | chr4_1:4558473-4558492 | Msa0530490:intron | 55.0% |
| ! | CAAGGGGAAAGCATGGGCTT+TGG | + | chr4_1:4560038-4560057 | None:intergenic | 55.0% |
| !! | GTAGGGGGGTTAAGGTGTTG+TGG | + | chr4_1:4561560-4561579 | None:intergenic | 55.0% |
| TGCTACAAGCCACCCTTTGG+TGG | - | chr4_1:4561623-4561642 | Msa0530490:CDS | 55.0% | |
| !! | GGTGGTGGAAGAGGCTCAGA+TGG | - | chr4_1:4558503-4558522 | Msa0530490:intron | 60.0% |
| GGTGGAAGAGGCTCAGATGG+TGG | - | chr4_1:4558506-4558525 | Msa0530490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4558157 | 4561992 | 4558157 | ID=Msa0530490;Name=Msa0530490 |
| chr4_1 | mRNA | 4558157 | 4561992 | 4558157 | ID=Msa0530490-mRNA-1;Parent=Msa0530490;Name=Msa0530490-mRNA-1;_AED=0.31;_eAED=0.31;_QI=46|1|0.66|1|1|1|3|0|240 |
| chr4_1 | exon | 4558157 | 4558244 | 4558157 | ID=Msa0530490-mRNA-1:exon:1378;Parent=Msa0530490-mRNA-1 |
| chr4_1 | exon | 4559431 | 4559603 | 4559431 | ID=Msa0530490-mRNA-1:exon:1377;Parent=Msa0530490-mRNA-1 |
| chr4_1 | exon | 4561485 | 4561992 | 4561485 | ID=Msa0530490-mRNA-1:exon:1376;Parent=Msa0530490-mRNA-1 |
| chr4_1 | five_prime_UTR | 4561947 | 4561992 | 4561947 | ID=Msa0530490-mRNA-1:five_prime_utr;Parent=Msa0530490-mRNA-1 |
| chr4_1 | CDS | 4561485 | 4561946 | 4561485 | ID=Msa0530490-mRNA-1:cds;Parent=Msa0530490-mRNA-1 |
| chr4_1 | CDS | 4559431 | 4559603 | 4559431 | ID=Msa0530490-mRNA-1:cds;Parent=Msa0530490-mRNA-1 |
| chr4_1 | CDS | 4558157 | 4558244 | 4558157 | ID=Msa0530490-mRNA-1:cds;Parent=Msa0530490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
