AlfalfaGEDB | Msa0533160

M. sativa cultivar zhongmu-4 / Msa0533160

KEGG: -
GO: -
PFAM: PF08424.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0533160	XP_003604693.2	97.841	1158	23	2	1	1156	1	1158	0.0	2335

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0533160	sp\|Q9H7Z3\|NRDE2_HUMAN	25.833	600	360	19	607	1145	577	1152	1.77e-38	160
Msa0533160	sp\|Q9H7Z3\|NRDE2_HUMAN	28.440	436	236	11	139	537	154	550	4.26e-35	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0533160	G7JP36	97.841	1158	23	2	1	1156	1	1158	0.0	2335

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0251270	Msa0533160	0.835089	2.055174e-56	-8.615850e-47
Msa0533160	Msa0800210	0.808755	2.649574e-50	-8.615850e-47
Msa0533160	Msa1341950	0.840871	6.695279e-58	-8.615850e-47
Msa0533160	Msa1449520	0.811667	6.242546e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0533160	MtrunA17_Chr4g0006741	97.841	1158	23	2	1	1156	1	1158	0.0	2335
Msa0533160	MtrunA17_Chr6g0480511	69.136	81	21	1	1050	1130	1	77	1.17e-29	112
Msa0533160	MtrunA17_Chr6g0480131	80.488	41	8	0	1020	1060	78	118	1.06e-13	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0533160	AT3G17740.1	55.604	1151	472	16	24	1155	18	1148	1192
Msa0533160	AT3G17712.1	51.609	777	340	14	24	783	18	775	695
Msa0533160	AT3G17712.2	48.929	840	349	17	24	846	49	825	687
Msa0533160	AT3G17712.3	49.163	777	334	14	24	783	18	750	647

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Find 270 sgRNAs with CRISPR-Local

Find 651 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGCTCGACTATATT+TGG	0.284322	4_1:+7871365	Msa0533160:CDS
AAAAGCCAGACAACTACAGA+TGG	0.630771	4_1:-7875840	None:intergenic
AAAATACGTCGAGCTGCAGA+AGG	0.595640	4_1:-7876008	None:intergenic
AAAATACTCTTGCAACATTC+TGG	0.251489	4_1:+7869912	Msa0533160:CDS
AAAATGAATTCTTCTAACCG+TGG	0.580478	4_1:+7872415	Msa0533160:CDS
AAAATTCAAGTTGATAGCTA+TGG	0.486757	4_1:-7874940	None:intergenic
AAACTGAACTCTGTTCTTAC+TGG	0.335846	4_1:+7876260	Msa0533160:CDS
AAATCTAAAGTGAAACTAGT+AGG	0.473342	4_1:-7872256	None:intergenic
AAATGAAACTGACAATGATT+TGG	0.382298	4_1:+7870878	Msa0533160:CDS
AAATGAATTCTTCTAACCGT+GGG	0.512118	4_1:+7872416	Msa0533160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGGTTACATTTCTTTCAA+AGG	+	chr4_1:7868167-7868186	Msa0533160:intron	30.0%
ATAAAGCACAAACATACACT+AGG	-	chr4_1:7868230-7868249	None:intergenic	30.0%
AGTGTATGTTTGTGCTTTAT+AGG	+	chr4_1:7868230-7868249	Msa0533160:intron	30.0%
TTAGTGAGTGTATTGAATGT+TGG	+	chr4_1:7868259-7868278	Msa0533160:intron	30.0%
AGAGCTAATGATGCATTTAA+TGG	+	chr4_1:7868300-7868319	Msa0533160:intron	30.0%
GAGCTAATGATGCATTTAAT+GGG	+	chr4_1:7868301-7868320	Msa0533160:intron	30.0%
AATATAATGACGATAGAGCT+AGG	+	chr4_1:7868843-7868862	Msa0533160:intron	30.0%
AGTTAGCGATTAAAGTGATA+AGG	+	chr4_1:7869164-7869183	Msa0533160:intron	30.0%
ATAAGAAGTCAAAGGTTCAA+TGG	-	chr4_1:7869210-7869229	None:intergenic	30.0%
GACATATTCAAGGGATTATA+CGG	-	chr4_1:7869327-7869346	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	7867530	7877217	7867530	ID=Msa0533160;Name=Msa0533160
chr4_1	mRNA	7867530	7877217	7867530	ID=Msa0533160-mRNA-1;Parent=Msa0533160;Name=Msa0533160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|1\|0.90\|1\|0.9\|0.81\|11\|405\|1156
chr4_1	exon	7867530	7868026	7867530	ID=Msa0533160-mRNA-1:exon:2694;Parent=Msa0533160-mRNA-1
chr4_1	exon	7869302	7870070	7869302	ID=Msa0533160-mRNA-1:exon:2695;Parent=Msa0533160-mRNA-1
chr4_1	exon	7870480	7871101	7870480	ID=Msa0533160-mRNA-1:exon:2696;Parent=Msa0533160-mRNA-1
chr4_1	exon	7871259	7871430	7871259	ID=Msa0533160-mRNA-1:exon:2697;Parent=Msa0533160-mRNA-1
chr4_1	exon	7872138	7872489	7872138	ID=Msa0533160-mRNA-1:exon:2698;Parent=Msa0533160-mRNA-1
chr4_1	exon	7873330	7873443	7873330	ID=Msa0533160-mRNA-1:exon:2699;Parent=Msa0533160-mRNA-1
chr4_1	exon	7873636	7873987	7873636	ID=Msa0533160-mRNA-1:exon:2700;Parent=Msa0533160-mRNA-1
chr4_1	exon	7874930	7875155	7874930	ID=Msa0533160-mRNA-1:exon:2701;Parent=Msa0533160-mRNA-1
chr4_1	exon	7875836	7876057	7875836	ID=Msa0533160-mRNA-1:exon:2702;Parent=Msa0533160-mRNA-1
chr4_1	exon	7876229	7876434	7876229	ID=Msa0533160-mRNA-1:exon:2703;Parent=Msa0533160-mRNA-1
chr4_1	exon	7876874	7877217	7876874	ID=Msa0533160-mRNA-1:exon:2704;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7867530	7868026	7867530	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7869302	7870070	7869302	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7870480	7871101	7870480	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7871259	7871430	7871259	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7872138	7872489	7872138	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7873330	7873443	7873330	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7873636	7873987	7873636	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7874930	7875155	7874930	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7875836	7876057	7875836	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	CDS	7876229	7876373	7876229	ID=Msa0533160-mRNA-1:cds;Parent=Msa0533160-mRNA-1
chr4_1	three_prime_UTR	7876374	7876434	7876374	ID=Msa0533160-mRNA-1:three_prime_utr;Parent=Msa0533160-mRNA-1
chr4_1	three_prime_UTR	7876874	7877217	7876874	ID=Msa0533160-mRNA-1:three_prime_utr;Parent=Msa0533160-mRNA-1

Gene Sequence

>Msa0533160

ATGGACCAAAAACCACCTCATCCGGCGGAAGAAACGACGGCGCCACCGTCCGACGAAGCAAAACCTTCACTCTTCCCTGTCTTCCCCGTAACAAAATCTTCTCTTCAAATCACAACTTCTCCGCTTCCTCAATGGCTCAGTAACTCTAGCTTCACAACCGACATCGCCGTCATCAATGACGATGTCGCTTCATTACTCAACCGCGAAACCGTGCAATCGCCGCCACCAGACGACGATGAAAACAGCGATGAAAATCGACCTAAGGAGAAGTCTTACGCGATTCTGGAATCCTCGGAATCGGATGGTAATGGAATGGAGAGAGAGAAGAAGAGGAAGAAGAAGAAGCGGAAGCGTGATAGGTCTGATGAGAGAAGTGGATTTGGTTCGAGGAAATCGCGTGTTCAAGCTTGGGCTGATTCGGAGGCTAATACTGTTAAAGATTATTACTTTGATTCTCATGGTGATCGTGATAATCTTGCGTTTGGCTGTATCTATAGAATGGATATTGCCCGGCACAAACCGTATAATCCCTTGAATATGTCTGGGCGACATGTTAAAGGTTTGTATTGGTGGAATCAAAGTGGTTCACTTGGGGAAAGAGATGGCGATATTGATGCTTTGGATGATAAAATGAAGTCTGCTGGGCGATACTGGTCCGGAAAGTATATGGCTTTAGAACGACATAAAAGCTTCAAGCGCCTACGTCTTGTTGCTCCAAAATTGTCACCTCATACAACACAAGATGAGTTTATACCTTTATCAGATGTTGGTACATCTCAAGGAGCTGACAGTGAATCCGACTCTAAAATTTCATCATCACTTGAAGAATCTTGGGAAGATGAAATGTTAAATAAAACCAGGGAGTTCAACAAACTGACAAGGGAGAACCCGCATGATGAAATAGTTTGGTTACATTTTGCCGAGTTCCAAGATAAGGTTGCAGGAATGCAACGGCAGAAAGGTGCTCGCTTGCAAATACTTGAAAAGAAAATTAGCATTCTGGAGAAGGCAGTTGAGCTTAACCCAGAGAATGAAAATCTATTACTTTGCCTTTTAAAAGCTTATCAAACAAGAGATAGCTCAGATGTGTTAATTGGGAGATGGGAGAAAATACTCTTGCAACATTCTGGAAGTTACAAGTTATGGAGTGAATTCTTGCATGTTGTTCAGAGGAATTTCTCCAAGTTCAAGGTTTCCATGATTAGGAAGATGTATGCTTATGCAATTGAAGCTTTGTCTGCTTCTGGCAGCAAGCACTCTAGGCAGGCTCTTCAAGCTGATGATTCTTCACCGGATCCTGCAATTGTTCAGCAAGAACTTCGTCTTGTAGATATATTTCTCAGTCTTTGCAGATTTGAGTGGCAGGCTGGTTATAGAGAAGTTGCCACTGCTTTATTTCAGGCTGAAATTGAGTTTAGTTTATTTTGTCCTCCTTTGCTACTCACAGAGCAAAGTAAGCAACGACTGTTTGAGCATTTTTGGAATAGTCATGGTGCTAGAGTCGGAGAAGAAGGGGCTCTCGGTTGGTCCACATGGTTGGAGAAAGAGGAGGAAACTAGGCAACGAGTCGTCAAAGAGGAGCTCTCACATGAAAATGAAGGCGGAGGTTGGTCTGGTTGGTCAGAACCTTTGTCTAAAGATAAGGAGGGTACGGCCAATTTTGAAAATGAAACTGACAATGATTTGGTTATGGAGGATAATCAAGATGAGGATGAATATAAAGATGTTGAGCCCGAAGATGATACTGAGAATTTGCTAAAGCTGCTGGGAATTGATATTAATGCTGGGGATGGGGGAGAAGTTAATGACACTTTGACCTGGATCAAATGGTCAGAAGAAGAGTCTTCCAGAGATTGTGATCAGTGGATGCCTATTCGAAGGAAGTTAGATACAACCTCTTCTACTAGTGAAGCACTCGAAACAGAAGAGGATGAGAAACTCTCGAGAATCATATTGTATGAAGATGTAAGCGAATACCTTTTCACCCTGAACACAAAAGAGGCTCGACTATATTTGGTGTCCCAATTCATTGACTTCTATGGTGGGAAGACGTCTCAATTGTTTTCAACAAACAGTCCAACTTGGACAGAGAACACACTTAGCTTGGAGGATCTGCCAGATTCTATGTTAGAGAAGTTGAAATGCATCCATAACGTTTTGACAAAAGCACAAAGCATTCCTACTAGTTTCACTTTAGATTTTCTATTAGGAAGTTCCATGAGGAATGCTGATATGATGAAATTCGTACGGAATGCAGTCTTACTTTGCTTAACTGTTTTTCCACGTAATCACGTTTTGGAAGAAGCAGTTCTTATTTGTGAAGAGCTTTTTGTTACTAAAATGAATTCTTCTAACCGTGGGGTTACGCCATGTCGAGCTTTGGCAAAGTCTCTCTTAAAAAGTGATAGACAGGATGTTTTGTTGTGTGGTGTATATGCACGAAGAGAGGCTGATTATGGCAATATTGATCTTGCAAGAAAGGTGTTTGATATGGCATTGTTATCTGTGGAAGGGCTTCCTCCCGAGGAGATTCAGTCCAATGCACCTCTTCTATATTTATGGTATGCTGAAGTGGAGCTTGCAAATAACACTAACGGTGGTCGTGAATCTTCATATCGTGCGATACATATATTGTCTTGCTTAGGAAATGGTACAAAATACACCCCATTTAAAAGTCAAGCATCAAGTTTGCAACTGCTTAGAGCACGTCAAGGGTTTAAAGAAAAACTGAGAACAGTATTATCATCTTCGTTTCGTGGTATAATAAATGACCAATCTGCCGCTCTGGTATGTTCTGCTTCATTGTTTGAGGAGCTAACTTCTGGATGTGATGCGGGCATTGAAGTTTTGGATCAAGCTTTTACTATGGTGCTTCCAGAAAGGAGAAGCCATAGCTATCAACTTGAATTTTTGTTTAACTATTACATAAGGATGCTTCAGAGGCATCAGAAGCAATCAGGTCTGATGAAAGTTTGGGAATCCGTTTCTCAGGGCCTCCAGCTATATCCCTTCAGTCCAGAACTTTTAAAAGGTGTAGTGGAAGTTGGCCACTTCCACACAACGTCTAATAAATTGCGGCGGATCCTAGATGAACGCTGTTACAAAAAACCATCTGTAGTTGTCTGGCTTTTTGCATTGTCATACGAGATGTCTAGAGGTGGCTCAATCCACAGAATCCGTGGATTATTTGAAAGGGCAGTGAGTAATCATATGCTTTGCAGCTCAGTTGTACTGTGGCGTTGCTACATTGGGTATGAATTGAACATTGCACATGATCCTTCTGCAGCTCGACGTATTTTCTTTCGTGCTATCCATGCTTGCCCCTGGTCAAAACGGCTATGGTTGGATGGATTTCTCAAACTGAACTCTGTTCTTACTGGAAAAGAGCTTTCTGATCTACAAGAAGTAATGTGTGATAAAGAACTAAATCTAAGAACTGACATTTATGAGATCCTTTTGCAAGAGTCATGA

Protein sequence

>Msa0533160

MDQKPPHPAEETTAPPSDEAKPSLFPVFPVTKSSLQITTSPLPQWLSNSSFTTDIAVINDDVASLLNRETVQSPPPDDDENSDENRPKEKSYAILESSESDGNGMEREKKRKKKKRKRDRSDERSGFGSRKSRVQAWADSEANTVKDYYFDSHGDRDNLAFGCIYRMDIARHKPYNPLNMSGRHVKGLYWWNQSGSLGERDGDIDALDDKMKSAGRYWSGKYMALERHKSFKRLRLVAPKLSPHTTQDEFIPLSDVGTSQGADSESDSKISSSLEESWEDEMLNKTREFNKLTRENPHDEIVWLHFAEFQDKVAGMQRQKGARLQILEKKISILEKAVELNPENENLLLCLLKAYQTRDSSDVLIGRWEKILLQHSGSYKLWSEFLHVVQRNFSKFKVSMIRKMYAYAIEALSASGSKHSRQALQADDSSPDPAIVQQELRLVDIFLSLCRFEWQAGYREVATALFQAEIEFSLFCPPLLLTEQSKQRLFEHFWNSHGARVGEEGALGWSTWLEKEEETRQRVVKEELSHENEGGGWSGWSEPLSKDKEGTANFENETDNDLVMEDNQDEDEYKDVEPEDDTENLLKLLGIDINAGDGGEVNDTLTWIKWSEEESSRDCDQWMPIRRKLDTTSSTSEALETEEDEKLSRIILYEDVSEYLFTLNTKEARLYLVSQFIDFYGGKTSQLFSTNSPTWTENTLSLEDLPDSMLEKLKCIHNVLTKAQSIPTSFTLDFLLGSSMRNADMMKFVRNAVLLCLTVFPRNHVLEEAVLICEELFVTKMNSSNRGVTPCRALAKSLLKSDRQDVLLCGVYARREADYGNIDLARKVFDMALLSVEGLPPEEIQSNAPLLYLWYAEVELANNTNGGRESSYRAIHILSCLGNGTKYTPFKSQASSLQLLRARQGFKEKLRTVLSSSFRGIINDQSAALVCSASLFEELTSGCDAGIEVLDQAFTMVLPERRSHSYQLEFLFNYYIRMLQRHQKQSGLMKVWESVSQGLQLYPFSPELLKGVVEVGHFHTTSNKLRRILDERCYKKPSVVVWLFALSYEMSRGGSIHRIRGLFERAVSNHMLCSSVVLWRCYIGYELNIAHDPSAARRIFFRAIHACPWSKRLWLDGFLKLNSVLTGKELSDLQEVMCDKELNLRTDIYEILLQES*