AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800210 MtrunA17_Chr1g0203051 42.880 632 321 4 74 679 4 621 0.0 536
Msa0800210 MtrunA17_Chr2g0287651 34.006 694 423 8 93 755 2 691 1.43e-132 417
Msa0800210 MtrunA17_Chr2g0308841 59.292 226 92 0 466 691 1 226 4.94e-99 308
Msa0800210 MtrunA17_Chr1g0202341 29.630 594 383 9 132 693 20 610 1.30e-85 287
Msa0800210 MtrunA17_Chr5g0448761 27.750 609 401 13 161 732 66 672 3.09e-79 272
Msa0800210 MtrunA17_Chr2g0324011 28.108 555 374 7 161 692 16 568 2.56e-73 251
Msa0800210 MtrunA17_Chr5g0441581 28.700 554 369 11 159 692 36 583 9.73e-72 249
Msa0800210 MtrunA17_Chr8g0363841 26.847 555 377 7 167 695 29 580 5.99e-70 244
Msa0800210 MtrunA17_Chr1g0198761 26.944 720 449 20 160 826 52 747 1.91e-67 239
Msa0800210 MtrunA17_Chr2g0296781 26.506 664 432 13 161 785 3 649 8.00e-65 231
Msa0800210 MtrunA17_Chr1g0203721 26.620 571 366 11 160 692 68 623 1.25e-64 233
Msa0800210 MtrunA17_Chr5g0448511 30.155 388 255 4 318 695 19 400 3.41e-64 225
Msa0800210 MtrunA17_Chr6g0458391 26.606 545 377 8 161 692 231 765 4.20e-64 229
Msa0800210 MtrunA17_Chr3g0082121 26.786 560 364 10 161 692 49 590 2.41e-63 226
Msa0800210 MtrunA17_Chr6g0477261 27.509 538 359 10 269 785 11 538 1.15e-62 223
Msa0800210 MtrunA17_Chr2g0287061 27.110 557 343 12 161 695 189 704 4.07e-61 221
Msa0800210 MtrunA17_Chr1g0207551 27.208 566 376 12 154 692 33 589 4.46e-59 216
Msa0800210 MtrunA17_Chr3g0118611 28.095 420 292 5 304 717 111 526 5.40e-59 215
Msa0800210 MtrunA17_Chr5g0440451 24.875 599 394 11 159 717 47 629 9.04e-57 210
Msa0800210 MtrunA17_Chr3g0080351 25.472 636 446 14 154 769 75 702 7.63e-56 207
Msa0800210 MtrunA17_Chr2g0276841 24.697 660 416 16 160 773 75 699 3.70e-53 197
Msa0800210 MtrunA17_Chr5g0431001 28.636 440 269 9 160 560 66 499 1.97e-52 191
Msa0800210 MtrunA17_Chr2g0291581 23.885 628 416 13 161 750 77 680 3.65e-52 194
Msa0800210 MtrunA17_Chr1g0196541 25.312 561 387 10 159 692 1 556 6.16e-51 191
Msa0800210 MtrunA17_Chr2g0294841 24.247 730 452 20 161 818 51 751 6.80e-51 191
Msa0800210 MtrunA17_Chr2g0329031 24.035 570 391 11 148 691 7 560 3.49e-50 189
Msa0800210 MtrunA17_Chr2g0290391 24.853 680 420 20 159 786 55 695 1.24e-46 177
Msa0800210 MtrunA17_Chr2g0291591 24.506 506 349 9 154 634 63 560 1.54e-44 169
Msa0800210 MtrunA17_Chr1g0164591 28.723 282 189 3 248 524 33 307 8.03e-42 155
Msa0800210 MtrunA17_Chr8g0389811 38.298 141 83 1 95 235 28 164 1.03e-24 102
Msa0800210 MtrunA17_Chr1g0171741 37.850 214 109 8 29 235 16 212 9.70e-24 101
Msa0800210 MtrunA17_Chr6g0473421 35.878 131 79 2 106 231 1 131 1.35e-23 97.8
Msa0800210 MtrunA17_Chr7g0258861 26.736 288 189 6 159 425 14 300 1.06e-22 99.8
Msa0800210 MtrunA17_Chr8g0340801 39.423 104 63 0 251 354 4 107 6.87e-22 91.3
Msa0800210 MtrunA17_Chr2g0331371 44.444 99 55 0 135 233 35 133 9.74e-18 82.8
Msa0800210 MtrunA17_Chr1g0172931 39.796 98 59 0 135 232 56 153 1.45e-17 80.9
Msa0800210 MtrunA17_Chr1g0149131 30.000 110 72 1 416 520 1 110 5.46e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800210 AT4G38180.1 29.949 591 381 12 151 711 69 656 2.41e-80 275
Msa0800210 AT3G06250.2 28.571 616 384 13 153 758 188 757 6.67e-71 249
Msa0800210 AT3G06250.1 28.571 616 384 13 153 758 188 757 6.67e-71 249
Msa0800210 AT3G06250.3 28.571 616 384 13 153 758 188 757 6.67e-71 249
Msa0800210 AT5G18960.2 28.076 634 367 17 153 758 209 781 1.39e-66 237
Msa0800210 AT5G18960.1 28.076 634 367 17 153 758 209 781 1.39e-66 237
Msa0800210 AT4G15090.1 24.714 611 428 10 161 746 57 660 2.22e-59 217
Msa0800210 AT4G15090.5 24.714 611 428 10 161 746 57 660 2.22e-59 217
Msa0800210 AT4G15090.3 24.714 611 428 10 161 746 57 660 2.22e-59 217
Msa0800210 AT4G15090.2 24.714 611 428 10 161 746 57 660 2.22e-59 217
Msa0800210 AT4G15090.4 24.714 611 428 10 161 746 57 660 2.22e-59 217
Msa0800210 AT3G22170.2 25.160 624 429 15 98 692 4 618 3.15e-58 214
Msa0800210 AT3G22170.1 25.160 624 429 15 98 692 4 618 3.15e-58 214
Msa0800210 AT2G27110.2 26.619 417 292 5 305 710 190 603 2.66e-53 200
Msa0800210 AT2G27110.1 26.619 417 292 5 305 710 190 603 2.66e-53 200
Msa0800210 AT2G27110.3 26.619 417 292 5 305 710 45 458 2.80e-53 197
Msa0800210 AT1G10240.2 25.970 593 362 17 160 701 53 619 2.21e-51 192
Msa0800210 AT1G10240.1 25.970 593 362 17 160 701 53 619 2.21e-51 192
Msa0800210 AT1G52520.1 25.135 557 377 12 161 689 91 635 2.85e-51 192
Msa0800210 AT1G76320.3 25.986 558 371 12 161 692 3 544 1.29e-50 189
Msa0800210 AT1G76320.2 25.986 558 371 12 161 692 3 544 1.67e-50 190
Msa0800210 AT1G76320.1 25.986 558 371 12 161 692 3 544 2.33e-50 189
Msa0800210 AT1G76320.4 25.986 558 371 12 161 692 3 544 2.33e-50 189
Msa0800210 AT2G32250.2 25.836 538 359 9 161 689 44 550 9.29e-50 189
Msa0800210 AT2G32250.4 25.836 538 359 9 161 689 44 550 9.29e-50 189
Msa0800210 AT2G32250.6 25.836 538 359 9 161 689 44 550 1.33e-49 188
Msa0800210 AT2G32250.1 25.836 538 359 9 161 689 44 550 1.33e-49 188
Msa0800210 AT2G32250.3 25.836 538 359 9 161 689 44 550 1.33e-49 188
Msa0800210 AT2G32250.5 25.836 538 359 9 161 689 44 550 1.40e-49 187
Msa0800210 AT2G32250.8 25.836 538 359 9 161 689 3 509 1.54e-49 187
Msa0800210 AT2G32250.7 25.836 538 359 9 161 689 3 509 1.64e-49 187
Msa0800210 AT4G38170.1 27.094 406 269 8 306 698 12 403 4.19e-48 180
Msa0800210 AT1G80010.1 24.884 647 404 18 161 747 101 725 2.09e-46 178
Msa0800210 AT4G19990.5 23.211 573 394 15 144 692 9 559 8.36e-41 161
Msa0800210 AT4G19990.3 23.211 573 394 15 144 692 9 559 9.72e-41 161
Msa0800210 AT4G19990.4 23.211 573 394 15 144 692 9 559 9.72e-41 161
Msa0800210 AT4G19990.7 23.211 573 394 15 144 692 23 573 1.08e-40 161
Msa0800210 AT4G19990.6 23.211 573 394 15 144 692 9 559 1.11e-40 161
Msa0800210 AT4G19990.2 23.211 573 394 15 144 692 9 559 1.11e-40 161
Msa0800210 AT5G28530.3 23.015 617 412 15 129 700 27 625 1.33e-39 157
Msa0800210 AT5G28530.2 23.015 617 412 15 129 700 27 625 1.33e-39 157
Msa0800210 AT5G28530.1 23.425 619 411 16 129 700 27 629 1.91e-39 156
Msa0800210 AT4G19990.1 24.378 402 288 6 302 692 106 502 3.03e-39 156

Find 185 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAGTGCTAAGGTTATTT+TGG 0.118975 5_3:+13609348 Msa0800210:five_prime_UTR
ATCAATATGCACACGAAATT+TGG 0.121650 5_3:-13611089 None:intergenic
AAAATCAGTCATATTCATTT+TGG 0.157178 5_3:-13612062 None:intergenic
GTTTCAATTCGTCCAGATTT+TGG 0.169319 5_3:+13609483 Msa0800210:five_prime_UTR
ACTGCACAAAATCGATATTT+TGG 0.171261 5_3:+13609452 Msa0800210:five_prime_UTR
ATGTTTCAGGGCGCCGTTTA+AGG 0.198308 5_3:+13609173 None:intergenic
GAGTATCAAGTATCGATATT+AGG 0.200358 5_3:-13612264 None:intergenic
TTTGGAAATTTGAAAATCTT+TGG 0.203663 5_3:+13611870 Msa0800210:CDS
GTAGGCTGCAACACTTATTT+TGG 0.215688 5_3:+13611450 Msa0800210:CDS
GATGGGGAAGGGGATGATTT+TGG 0.225774 5_3:+13610494 Msa0800210:CDS
CAGAAGAATTTCGAAGTCTT+TGG 0.246838 5_3:+13611488 Msa0800210:CDS
GAAAGTGATGAAGCTTTCTT+AGG 0.257531 5_3:+13610644 Msa0800210:CDS
TTTAAGGTACGCGGCCGTTA+TGG 0.260007 5_3:+13609189 Msa0800210:five_prime_UTR
ACAATGATGGTTCACACTAT+TGG 0.260684 5_3:+13612530 Msa0800210:CDS
TACCATCTCGAATATTTCTT+TGG 0.266947 5_3:-13612218 None:intergenic
GGTTTCTGATTTATCATATA+AGG 0.278651 5_3:+13612603 Msa0800210:CDS
CAATGATGGTTCACACTATT+GGG 0.279726 5_3:+13612531 Msa0800210:CDS
TGTCTTAGAATGGAATCTAT+TGG 0.287457 5_3:+13612391 Msa0800210:CDS
GATGTTTCGAAGCTGCTATT+TGG 0.293362 5_3:+13610857 Msa0800210:CDS
GGTTGCTAGACATGCGAATT+TGG 0.295257 5_3:+13612564 Msa0800210:CDS
TGAAAATCTTTGGAATGATA+TGG 0.301739 5_3:+13611880 Msa0800210:CDS
CCACACCTGGTTTCATGTTT+CGG 0.305468 5_3:-13611058 None:intergenic
CTATGAGCAGCCTTTGATTC+CGG 0.308243 5_3:-13611170 None:intergenic
ATTCGGGGAAATTTCTTTGC+AGG 0.313098 5_3:+13611980 Msa0800210:CDS
GCTTCCATTACTTCATTTCC+AGG 0.315061 5_3:-13610338 None:intergenic
TAAGGTAGGATTTCTGAAAA+AGG 0.322031 5_3:+13611298 Msa0800210:CDS
AGTATCAAGTATCGATATTA+GGG 0.322456 5_3:-13612263 None:intergenic
ACATGCAGATGATGAGGATT+TGG 0.329267 5_3:+13610715 Msa0800210:CDS
ACACTATTGGGATTCTCATT+TGG 0.329690 5_3:+13612543 Msa0800210:CDS
CATTTGCGTAACTTTGATTC+CGG 0.344195 5_3:-13611240 None:intergenic
TGTTAGTTACCTGTTCTTGC+AGG 0.347258 5_3:+13609294 Msa0800210:five_prime_UTR
TGTGGGCAGCAAGTCATATT+CGG 0.348450 5_3:+13611963 Msa0800210:CDS
ATGTTTCGAAGCTGCTATTT+GGG 0.349738 5_3:+13610858 Msa0800210:CDS
TTAAGGTACGCGGCCGTTAT+GGG 0.353959 5_3:+13609190 Msa0800210:five_prime_UTR
CATTTGCATTCGATTCCATA+TGG 0.359378 5_3:-13610301 None:intergenic
GAAGATGATTATTCCGTTGA+TGG 0.369473 5_3:+13610680 Msa0800210:CDS
GGTACGGATAGTCATGAAAA+AGG 0.369480 5_3:+13612237 Msa0800210:CDS
ACTTGAGCATGTAAATTATC+AGG 0.372962 5_3:-13612709 None:intergenic
ATTGTAGTGATGCCAAAATC+TGG 0.373209 5_3:-13609495 None:intergenic
GTGGGCAGCAAGTCATATTC+GGG 0.378045 5_3:+13611964 Msa0800210:CDS
ACAACCTTTGCTTCTTGAAC+AGG 0.383386 5_3:-13612758 None:intergenic
AAGATTCAAGTTACCAACTT+TGG 0.389423 5_3:+13611212 Msa0800210:CDS
GTAACACCGCATTCCCATAT+TGG 0.390293 5_3:-13612150 None:intergenic
TAGAAACTGTATATATTTGA+AGG 0.403177 5_3:+13610269 Msa0800210:intron
ACATTTGTGTGCAATCTAGA+AGG 0.405952 5_3:+13610989 Msa0800210:CDS
TGCTTGGTGATCATGAAGTT+TGG 0.411781 5_3:+13611852 Msa0800210:CDS
TGCATGTTCTTGTCTTAGAA+TGG 0.413399 5_3:+13612381 Msa0800210:CDS
TATATCACCATCTGTTATTA+CGG 0.417164 5_3:-13611702 None:intergenic
TAACACCGCATTCCCATATT+GGG 0.420547 5_3:-13612149 None:intergenic
TTTGCAAAGGAGTCGATTAG+AGG 0.423610 5_3:+13612502 Msa0800210:CDS
TGAGGCATTTCATAGTCATA+TGG 0.429073 5_3:+13612024 Msa0800210:CDS
TATTTCCCAAGAGTTATCAT+AGG 0.431230 5_3:+13611750 Msa0800210:CDS
CCATCTGTTATTACGGAAAC+GGG 0.434618 5_3:-13611695 None:intergenic
TGTTCTTCTCGTTTCAGTAA+AGG 0.437470 5_3:-13609406 None:intergenic
TTCACCTTTGATCACAACTT+TGG 0.441565 5_3:+13611142 Msa0800210:CDS
AATGATATGGTTGAAAAGTT+CGG 0.444952 5_3:+13611893 Msa0800210:CDS
ACCATCTGTTATTACGGAAA+CGG 0.445629 5_3:-13611696 None:intergenic
TGAAGGTTAAAGCACCCATA+TGG 0.446452 5_3:+13610286 Msa0800210:exon
ATCAAAGTTACGCAAATGAT+TGG 0.447493 5_3:+13611245 Msa0800210:CDS
ATCAAGCAGAAGGTTATGTT+TGG 0.449795 5_3:+13612326 Msa0800210:CDS
ACATAACCTATGATAACTCT+TGG 0.457964 5_3:-13611756 None:intergenic
TACTGATTACCTGCAAGAAC+AGG 0.461785 5_3:-13609303 None:intergenic
TACTGCCGTTGTTGCTAATG+AGG 0.464827 5_3:+13611613 Msa0800210:CDS
TGATGAATTTCCTAAGTCTC+TGG 0.465021 5_3:+13612459 Msa0800210:CDS
CGGAATCAAAGGCTGCTCAT+AGG 0.466376 5_3:+13611171 Msa0800210:CDS
GTTACCAACTTTGGCAATGC+CGG 0.467106 5_3:+13611221 Msa0800210:CDS
GTACGAACAAATTCTCCATC+TGG 0.467675 5_3:-13612883 None:intergenic
GAATTTGGTGTATCTTAGTA+AGG 0.468793 5_3:+13612579 Msa0800210:CDS
TCGGTCTTGAAGACAATAGA+TGG 0.471890 5_3:+13611912 Msa0800210:CDS
TTTACATGCTCAAGTGGAGT+TGG 0.473244 5_3:+13612717 Msa0800210:CDS
ATTAGAGGTAATTACAATGA+TGG 0.474312 5_3:+13612517 Msa0800210:CDS
CGATTCAATACCAGAGACTT+AGG 0.479278 5_3:-13612469 None:intergenic
GATCACAACTTTGGCAATGC+CGG 0.485205 5_3:+13611151 Msa0800210:CDS
AAAGCAAAGTATTGCGATGA+AGG 0.487005 5_3:+13612682 Msa0800210:CDS
GAATGAAGCTGATGGGGAAG+GGG 0.489435 5_3:+13610484 Msa0800210:CDS
GAGGCATTTCATAGTCATAT+GGG 0.491343 5_3:+13612025 Msa0800210:CDS
TTTGGCAATGCCGGAATCAA+AGG 0.492347 5_3:+13611160 Msa0800210:CDS
ATTTGCATTCGATTCCATAT+GGG 0.494434 5_3:-13610300 None:intergenic
GACAGTGAAGCAGATGATAC+TGG 0.499803 5_3:+13610518 Msa0800210:CDS
GACAGTGAAGCAGATGATAC+TGG 0.499803 5_3:+13610542 Msa0800210:CDS
CATAACCTATGATAACTCTT+GGG 0.500586 5_3:-13611755 None:intergenic
TGCCGCTGGCGGGTATGATA+AGG 0.500952 5_3:+13611280 Msa0800210:CDS
CGTTTGCAAATGCCGCTGGC+GGG 0.501798 5_3:+13611270 Msa0800210:CDS
TTTGGCTTCACAACCACACC+TGG 0.505278 5_3:-13611071 None:intergenic
TTCTCGTTTCAGTAAAGGCA+AGG 0.507249 5_3:-13609401 None:intergenic
TGCTCATAGGAAGCTGACTA+AGG 0.509602 5_3:+13611184 Msa0800210:CDS
ATTGGGAATTAAAATCAGCT+TGG 0.509845 5_3:-13612132 None:intergenic
TATGTGCATGGCACCTCCTA+CGG 0.510752 5_3:+13611774 Msa0800210:CDS
GATTCCGGCATTGCCAAAGT+TGG 0.511513 5_3:-13611225 None:intergenic
GGTGCGTTTGCAAATGCCGC+TGG 0.512886 5_3:+13611266 Msa0800210:CDS
GAGAATGAAGCTGATGGGGA+AGG 0.513879 5_3:+13610482 Msa0800210:CDS
GTCTTATAACTTGCATGTGT+AGG 0.523293 5_3:+13609262 Msa0800210:five_prime_UTR
TGTTGACGATATTGTAAAGA+TGG 0.525284 5_3:+13610811 Msa0800210:CDS
AGAATGAAGCTGATGGGGAA+GGG 0.531569 5_3:+13610483 Msa0800210:CDS
AAGAAATATTCGAGATGGTA+CGG 0.533749 5_3:+13612221 Msa0800210:CDS
ATACGGTTGGTGCGGATGGT+AGG 0.533889 5_3:+13611432 Msa0800210:CDS
TAGATATTGCATTCCGTAGG+AGG 0.534345 5_3:-13611787 None:intergenic
TGAAATTTCCTCGCCATCAA+CGG 0.534707 5_3:-13610693 None:intergenic
AGACATGAGAATGAAGCTGA+TGG 0.535376 5_3:+13610476 Msa0800210:CDS
GGTGACAGTGAAGGAGATAG+TGG 0.538500 5_3:+13610587 Msa0800210:CDS
AATATCATTACTTAATCGCA+AGG 0.538635 5_3:-13612926 None:intergenic
GACATGAGAATGAAGCTGAT+GGG 0.540980 5_3:+13610477 Msa0800210:CDS
TGATTATTCCGTTGATGGCG+AGG 0.543980 5_3:+13610685 Msa0800210:CDS
AGTCTCTGGTATTGAATCGT+TGG 0.547489 5_3:+13612473 Msa0800210:CDS
ACCTAGCACGAGCAATGCAA+TGG 0.547777 5_3:+13612783 Msa0800210:CDS
GATGATACTGGTGACGGTGA+AGG 0.547882 5_3:+13610554 Msa0800210:CDS
ACTGATGTTTGTTGAACATA+CGG 0.549271 5_3:+13611415 Msa0800210:CDS
CCTCTCAAGTGACCTCAGAC+TGG 0.550020 5_3:-13612176 None:intergenic
GATGATAGTGGTGACAGTGA+AGG 0.552446 5_3:+13610578 Msa0800210:CDS
TCAGTAAAGGCAAGGAAAAG+AGG 0.553109 5_3:-13609393 None:intergenic
AAAATCTGGACGAATTGAAA+CGG 0.554918 5_3:-13609481 None:intergenic
TGTCCCACTCTTAATCCAGA+TGG 0.555650 5_3:+13612868 Msa0800210:CDS
TACCAAAGAAATATTCGAGA+TGG 0.558333 5_3:+13612216 Msa0800210:CDS
GACTATGAAATGCCTCACAC+CGG 0.561637 5_3:-13612018 None:intergenic
GCTGCTATTTGGGAGTCTTG+AGG 0.562706 5_3:+13610868 Msa0800210:CDS
CCTAGCACGAGCAATGCAAT+GGG 0.563237 5_3:+13612784 Msa0800210:CDS
GTTGTTGCTAATGAGGTTGA+AGG 0.563601 5_3:+13611620 Msa0800210:CDS
TGTTGGTTTGCAAAGATGAA+CGG 0.567136 5_3:+13610908 Msa0800210:CDS
TTCACCTGGAAATGAAGTAA+TGG 0.570466 5_3:+13610334 Msa0800210:CDS
CCTTCCTGTTCAAGAAGCAA+AGG 0.571674 5_3:+13612754 Msa0800210:CDS
CATGCAAAATCGTTGTTCGA+TGG 0.571680 5_3:-13612364 None:intergenic
GCAAAGTATTGCGATGAAGG+TGG 0.572553 5_3:+13612685 Msa0800210:CDS
TTCTCCATCTGGATTAAGAG+TGG 0.574042 5_3:-13612872 None:intergenic
TGTTCAAGAAGCAAAGGTTG+TGG 0.574381 5_3:+13612760 Msa0800210:CDS
CCCGTTTCCGTAATAACAGA+TGG 0.581034 5_3:+13611695 Msa0800210:CDS
GCAGCATGCGAGACCCATAA+CGG 0.581610 5_3:-13609203 None:intergenic
AATTTCACATGCAGATGATG+AGG 0.582843 5_3:+13610709 Msa0800210:CDS
CAAAGTATTGCGATGAAGGT+GGG 0.584579 5_3:+13612686 Msa0800210:CDS
GTGTCAAAATATCAAGCAGA+AGG 0.586162 5_3:+13612316 Msa0800210:CDS
ATAATACAAATTGAGTGCTA+AGG 0.586735 5_3:+13609339 Msa0800210:five_prime_UTR
GACGGTGAAGGAGATGATAG+TGG 0.587223 5_3:+13610566 Msa0800210:CDS
AAAGGCAAGGAAAAGAGGAA+AGG 0.587281 5_3:-13609388 None:intergenic
GCGTTTGCAAATGCCGCTGG+CGG 0.592180 5_3:+13611269 Msa0800210:CDS
CGGAATGCAATATCTAACAT+TGG 0.594292 5_3:+13611794 Msa0800210:CDS
TTTGGTGTATCTTAGTAAGG+AGG 0.595309 5_3:+13612582 Msa0800210:CDS
TCACAGACGTGTGGGATATG+TGG 0.596443 5_3:+13612820 Msa0800210:CDS
TGATAATTTACATGCTCAAG+TGG 0.597139 5_3:+13612711 Msa0800210:CDS
ACTATGAAATGCCTCACACC+GGG 0.598023 5_3:-13612017 None:intergenic
ACGTGTGGGATATGTGGTGC+AGG 0.599744 5_3:+13612826 Msa0800210:CDS
CCCATTGCATTGCTCGTGCT+AGG 0.600150 5_3:-13612784 None:intergenic
ATTTGTTGAATGATAATCAG+TGG 0.602980 5_3:+13609516 Msa0800210:five_prime_UTR
CAGATGGTGATATAGCTATG+AGG 0.605316 5_3:+13611711 Msa0800210:CDS
AAAATATTTAGAATATCTAA+CGG 0.607430 5_3:+13612642 Msa0800210:CDS
ATTGCCAAAGTTGTGATCAA+AGG 0.607583 5_3:-13611146 None:intergenic
TCTCCATCTGGATTAAGAGT+GGG 0.607877 5_3:-13612871 None:intergenic
ACATGAGAATGAAGCTGATG+GGG 0.608034 5_3:+13610478 Msa0800210:CDS
GTTATCATAGGTTATGTGCA+TGG 0.608973 5_3:+13611762 Msa0800210:CDS
CCAGTCTGAGGTCACTTGAG+AGG 0.609316 5_3:+13612176 Msa0800210:CDS
GAACATACGGTTGGTGCGGA+TGG 0.610060 5_3:+13611428 Msa0800210:CDS
CAGGAATAAGAACAACATCC+CGG 0.610393 5_3:+13611999 Msa0800210:CDS
TTGTTGCTAATGAGGTTGAA+GGG 0.614880 5_3:+13611621 Msa0800210:CDS
AGGGCGCCGTTTAAGGTACG+CGG 0.615406 5_3:+13609180 None:intergenic
TCGTTGGTCACAATTTGCAA+AGG 0.617164 5_3:+13612489 Msa0800210:CDS
TGAGCATATCATTGCTGTGA+TGG 0.617484 5_3:+13612423 Msa0800210:CDS
ATGTTTGTTGAACATACGGT+TGG 0.617809 5_3:+13611419 Msa0800210:CDS
CCTTTGCTTCTTGAACAGGA+AGG 0.617922 5_3:-13612754 None:intergenic
GAAAATATGCAACACACCTG+TGG 0.618576 5_3:-13612096 None:intergenic
TTCAACCTCATTAGCAACAA+CGG 0.622360 5_3:-13611618 None:intergenic
AAGAACAACATCCCGGTGTG+AGG 0.623949 5_3:+13612006 Msa0800210:CDS
TAATTCCCAATATGGGAATG+CGG 0.626872 5_3:+13612144 Msa0800210:CDS
GTGGTCCGAAACATGAAACC+AGG 0.629631 5_3:+13611053 Msa0800210:CDS
GCAGATGATGAGGATTTGGA+CGG 0.633477 5_3:+13610719 Msa0800210:CDS
GCAATGCAATGGGTCATCGT+CGG 0.633980 5_3:+13612794 Msa0800210:CDS
AGGGACATATGTGTGGCTGT+TGG 0.634437 5_3:+13611640 Msa0800210:CDS
CGTCGGCGATCACAGACGTG+TGG 0.640458 5_3:+13612811 Msa0800210:CDS
GTCGGCGATCACAGACGTGT+GGG 0.640804 5_3:+13612812 Msa0800210:CDS
GTATGTTCAACAAACATCAG+TGG 0.647532 5_3:-13611413 None:intergenic
AATGCTGTTGTAGATTCACC+TGG 0.647812 5_3:+13610320 Msa0800210:CDS
TGTTAGATATTGCATTCCGT+AGG 0.648853 5_3:-13611790 None:intergenic
CAAATCTTTAAGATACGTAA+CGG 0.651380 5_3:-13611378 None:intergenic
ATCTAACGGATGAACTCAGT+AGG 0.651486 5_3:+13612656 Msa0800210:CDS
ACAGCAGAGGAACGCAAGCG+TGG 0.658950 5_3:+13611034 Msa0800210:CDS
CGGTGTTACAGACCAGTCTG+AGG 0.662194 5_3:+13612164 Msa0800210:CDS
CAGTTACGAAGAAATTGTGA+AGG 0.665835 5_3:-13609433 None:intergenic
TGTGGGATATGTGGTGCAGG+TGG 0.666238 5_3:+13612829 Msa0800210:CDS
AGGCATTTCATAGTCATATG+GGG 0.667282 5_3:+13612026 Msa0800210:CDS
TACCTTATCATACCCGCCAG+CGG 0.668297 5_3:-13611282 None:intergenic
TGGGCAGCAAGTCATATTCG+GGG 0.668632 5_3:+13611965 Msa0800210:CDS
TGTTGAACATACGGTTGGTG+CGG 0.671951 5_3:+13611424 Msa0800210:CDS
ACAGCAATGATATGCTCACA+AGG 0.676151 5_3:-13612418 None:intergenic
GCTGGCGGGTATGATAAGGT+AGG 0.701917 5_3:+13611284 Msa0800210:CDS
GGACGGAAATTCTGACGATG+TGG 0.703394 5_3:+13610736 Msa0800210:CDS
GAAGCAGATGATACTGGTGA+CGG 0.713898 5_3:+13610548 Msa0800210:CDS
CCGAAACATGAAACCAGGTG+TGG 0.733557 5_3:+13611058 Msa0800210:CDS
AGGTTGAAGGGACATATGTG+TGG 0.742861 5_3:+13611633 Msa0800210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTTAGAATATCTAA+CGG + chr5_3:13612642-13612661 Msa0800210:CDS 10.0%
!!! CAAGTTTTTTTTTTTTATGT+TGG + chr5_3:13609240-13609259 Msa0800210:five_prime_UTR 15.0%
!! ATTTAAATGAATTAGTACAT+TGG + chr5_3:13610164-13610183 Msa0800210:intron 15.0%
!! CAAGTAATAAAAAATAAGAA+TGG + chr5_3:13610950-13610969 Msa0800210:CDS 15.0%
!! TAAATGAATTGTATGAAAAA+AGG + chr5_3:13611936-13611955 Msa0800210:CDS 15.0%
!!! TTATTTTCAAAACTGAGTAA+AGG - chr5_3:13609561-13609580 None:intergenic 20.0%
!! TAGAAACTGAATATATTTGA+AGG + chr5_3:13609604-13609623 Msa0800210:intron 20.0%
!! TAAGGTAAATAATTTCATCT+AGG - chr5_3:13609799-13609818 None:intergenic 20.0%
!! TATAGCAAATATACAAGTTA+AGG - chr5_3:13609817-13609836 None:intergenic 20.0%
!! TCTTAAGAATTTGAATCAAT+TGG + chr5_3:13610119-13610138 Msa0800210:intron 20.0%
!!! TTATTTTCAAAACTGAGTAA+AGG - chr5_3:13609561-13609580 None:intergenic 20.0%
!! TAGAAACTGTATATATTTGA+AGG + chr5_3:13610269-13610288 Msa0800210:intron 20.0%
!! ATGTACAAATATATAAGATG+TGG + chr5_3:13610378-13610397 Msa0800210:intron 20.0%
!! AAAACATGGTATATAAAACT+AGG - chr5_3:13610435-13610454 None:intergenic 20.0%
!! TTTGGAAATTTGAAAATCTT+TGG + chr5_3:13611870-13611889 Msa0800210:CDS 20.0%
!!! AAAATCAGTCATATTCATTT+TGG - chr5_3:13612065-13612084 None:intergenic 20.0%
! ATAATACAAATTGAGTGCTA+AGG + chr5_3:13609339-13609358 Msa0800210:five_prime_UTR 25.0%
!! ATTTGTTGAATGATAATCAG+TGG + chr5_3:13609516-13609535 Msa0800210:five_prime_UTR 25.0%
! CAGATAAAATAAGTGAAATG+AGG - chr5_3:13609713-13609732 None:intergenic 25.0%
!!! CTCATTTCACTTATTTTATC+TGG + chr5_3:13609711-13609730 Msa0800210:intron 25.0%
! AGAATTTGAATCAATTGGTT+TGG + chr5_3:13610124-13610143 Msa0800210:intron 25.0%
! AAACCAACAGTAAAAATTGT+AGG - chr5_3:13610897-13610916 None:intergenic 25.0%
! TTGATATAATTACTCAACGT+TGG + chr5_3:13611107-13611126 Msa0800210:intron 25.0%
!! ACAAAGAAAAGTGATGTTTT+CGG + chr5_3:13611343-13611362 Msa0800210:CDS 25.0%
!!! CAAATCTTTAAGATACGTAA+CGG - chr5_3:13611381-13611400 None:intergenic 25.0%
! TATATCACCATCTGTTATTA+CGG - chr5_3:13611705-13611724 None:intergenic 25.0%
!!! GCATACATCTTTTGAAAAAT+GGG - chr5_3:13611835-13611854 None:intergenic 25.0%
!!! AGCATACATCTTTTGAAAAA+TGG - chr5_3:13611836-13611855 None:intergenic 25.0%
!!! TTTTTCAAAAGATGTATGCT+TGG + chr5_3:13611836-13611855 Msa0800210:CDS 25.0%
!!! TGAAAATCTTTGGAATGATA+TGG + chr5_3:13611880-13611899 Msa0800210:CDS 25.0%
! AATGATATGGTTGAAAAGTT+CGG + chr5_3:13611893-13611912 Msa0800210:CDS 25.0%
! TGTATGAAAAAAGGAAAATG+TGG + chr5_3:13611945-13611964 Msa0800210:CDS 25.0%
! GTATGAAAAAAGGAAAATGT+GGG + chr5_3:13611946-13611965 Msa0800210:CDS 25.0%
!!! CTGATTTTAATTCCCAATAT+GGG + chr5_3:13612137-13612156 Msa0800210:CDS 25.0%
!!! AGTATCAAGTATCGATATTA+GGG - chr5_3:13612266-13612285 None:intergenic 25.0%
! ATTAGAGGTAATTACAATGA+TGG + chr5_3:13612517-13612536 Msa0800210:CDS 25.0%
! GGTTTCTGATTTATCATATA+AGG + chr5_3:13612603-13612622 Msa0800210:CDS 25.0%
! AATATCATTACTTAATCGCA+AGG - chr5_3:13612929-13612948 None:intergenic 25.0%
! ATTGAGTGCTAAGGTTATTT+TGG + chr5_3:13609348-13609367 Msa0800210:five_prime_UTR 30.0%
!! TTGAGTGCTAAGGTTATTTT+GGG + chr5_3:13609349-13609368 Msa0800210:five_prime_UTR 30.0%
! ACTGCACAAAATCGATATTT+TGG + chr5_3:13609452-13609471 Msa0800210:five_prime_UTR 30.0%
!!! CACAAAATCGATATTTTGGT+TGG + chr5_3:13609456-13609475 Msa0800210:five_prime_UTR 30.0%
AAAATCTGGACGAATTGAAA+CGG - chr5_3:13609484-13609503 None:intergenic 30.0%
! AAGTAAGTTCATGAACCTTT+TGG + chr5_3:13609854-13609873 Msa0800210:intron 30.0%
! GAATGAAATTTTCCACTAGA+GGG - chr5_3:13610002-13610021 None:intergenic 30.0%
! TGAATGAAATTTTCCACTAG+AGG - chr5_3:13610003-13610022 None:intergenic 30.0%
! AATGAAATTTTCCACTAGAG+AGG - chr5_3:13610001-13610020 None:intergenic 30.0%
AAATGAATTAGTACATTGGC+AGG + chr5_3:13610168-13610187 Msa0800210:intron 30.0%
ATTTGCATTCGATTCCATAT+GGG - chr5_3:13610303-13610322 None:intergenic 30.0%
TGTTGACGATATTGTAAAGA+TGG + chr5_3:13610811-13610830 Msa0800210:CDS 30.0%
! TTGCCTACAATTTTTACTGT+TGG + chr5_3:13610891-13610910 Msa0800210:CDS 30.0%
ATCAATATGCACACGAAATT+TGG - chr5_3:13611092-13611111 None:intergenic 30.0%
! AAGATTCAAGTTACCAACTT+TGG + chr5_3:13611212-13611231 Msa0800210:CDS 30.0%
ATCAAAGTTACGCAAATGAT+TGG + chr5_3:13611245-13611264 Msa0800210:CDS 30.0%
! TAAGGTAGGATTTCTGAAAA+AGG + chr5_3:13611298-13611317 Msa0800210:CDS 30.0%
! ACTGATGTTTGTTGAACATA+CGG + chr5_3:13611415-13611434 Msa0800210:CDS 30.0%
!!! AACACTTATTTTGGAGTGAT+GGG + chr5_3:13611459-13611478 Msa0800210:CDS 30.0%
!!! TGTCCATTTGTTGTTTTTTC+TGG + chr5_3:13611557-13611576 Msa0800210:CDS 30.0%
ACACCAGAAAAAACAACAAA+TGG - chr5_3:13611563-13611582 None:intergenic 30.0%
TATTTCCCAAGAGTTATCAT+AGG + chr5_3:13611750-13611769 Msa0800210:CDS 30.0%
CATAACCTATGATAACTCTT+GGG - chr5_3:13611758-13611777 None:intergenic 30.0%
ACATAACCTATGATAACTCT+TGG - chr5_3:13611759-13611778 None:intergenic 30.0%
! TGCATATTTTCGTTTCAAAG+AGG + chr5_3:13612108-13612127 Msa0800210:CDS 30.0%
ATTGGGAATTAAAATCAGCT+TGG - chr5_3:13612135-13612154 None:intergenic 30.0%
!!! GCTGATTTTAATTCCCAATA+TGG + chr5_3:13612136-13612155 Msa0800210:CDS 30.0%
TACCAAAGAAATATTCGAGA+TGG + chr5_3:13612216-13612235 Msa0800210:CDS 30.0%
TACCATCTCGAATATTTCTT+TGG - chr5_3:13612221-13612240 None:intergenic 30.0%
AAGAAATATTCGAGATGGTA+CGG + chr5_3:13612221-13612240 Msa0800210:CDS 30.0%
!! GAGTATCAAGTATCGATATT+AGG - chr5_3:13612267-13612286 None:intergenic 30.0%
TGTCTTAGAATGGAATCTAT+TGG + chr5_3:13612391-13612410 Msa0800210:CDS 30.0%
!! GAATTTGGTGTATCTTAGTA+AGG + chr5_3:13612579-13612598 Msa0800210:CDS 30.0%
ACTTGAGCATGTAAATTATC+AGG - chr5_3:13612712-13612731 None:intergenic 30.0%
TGATAATTTACATGCTCAAG+TGG + chr5_3:13612711-13612730 Msa0800210:CDS 30.0%
! GTCTTATAACTTGCATGTGT+AGG + chr5_3:13609262-13609281 Msa0800210:five_prime_UTR 35.0%
TGTTCTTCTCGTTTCAGTAA+AGG - chr5_3:13609409-13609428 None:intergenic 35.0%
CAGTTACGAAGAAATTGTGA+AGG - chr5_3:13609436-13609455 None:intergenic 35.0%
! GTTTCAATTCGTCCAGATTT+TGG + chr5_3:13609483-13609502 Msa0800210:five_prime_UTR 35.0%
ATTGTAGTGATGCCAAAATC+TGG - chr5_3:13609498-13609517 None:intergenic 35.0%
!! AGTTCATGAACCTTTTGGTT+TGG + chr5_3:13609859-13609878 Msa0800210:intron 35.0%
!!! GTTCATGAACCTTTTGGTTT+GGG + chr5_3:13609860-13609879 Msa0800210:intron 35.0%
GGAAAAGGGTTGGAAAATAT+TGG + chr5_3:13609965-13609984 Msa0800210:intron 35.0%
AAGGGTTGGAAAATATTGGT+AGG + chr5_3:13609969-13609988 Msa0800210:intron 35.0%
ATCACAATTAACCTCTCTAG+TGG + chr5_3:13610067-13610086 Msa0800210:intron 35.0%
CATTTGCATTCGATTCCATA+TGG - chr5_3:13610304-13610323 None:intergenic 35.0%
TTCACCTGGAAATGAAGTAA+TGG + chr5_3:13610334-13610353 Msa0800210:CDS 35.0%
!!! ACCATGTTTTTAGCAAGCAA+TGG + chr5_3:13610445-13610464 Msa0800210:intron 35.0%
! TCCATTGCTTGCTAAAAACA+TGG - chr5_3:13610449-13610468 None:intergenic 35.0%
GAAAGTGATGAAGCTTTCTT+AGG + chr5_3:13610644-13610663 Msa0800210:CDS 35.0%
GAAGATGATTATTCCGTTGA+TGG + chr5_3:13610680-13610699 Msa0800210:CDS 35.0%
AATTTCACATGCAGATGATG+AGG + chr5_3:13610709-13610728 Msa0800210:CDS 35.0%
! ATGTTTCGAAGCTGCTATTT+GGG + chr5_3:13610858-13610877 Msa0800210:CDS 35.0%
!! TGTTGGTTTGCAAAGATGAA+CGG + chr5_3:13610908-13610927 Msa0800210:CDS 35.0%
ACATTTGTGTGCAATCTAGA+AGG + chr5_3:13610989-13611008 Msa0800210:CDS 35.0%
! TGTGCAATCTAGAAGGTTTT+AGG + chr5_3:13610996-13611015 Msa0800210:CDS 35.0%
TTCACCTTTGATCACAACTT+TGG + chr5_3:13611142-13611161 Msa0800210:CDS 35.0%
ATTGCCAAAGTTGTGATCAA+AGG - chr5_3:13611149-13611168 None:intergenic 35.0%
CATTTGCGTAACTTTGATTC+CGG - chr5_3:13611243-13611262 None:intergenic 35.0%
GTATGTTCAACAAACATCAG+TGG - chr5_3:13611416-13611435 None:intergenic 35.0%
! ATGTTTGTTGAACATACGGT+TGG + chr5_3:13611419-13611438 Msa0800210:CDS 35.0%
!!! CAACACTTATTTTGGAGTGA+TGG + chr5_3:13611458-13611477 Msa0800210:CDS 35.0%
!!! ACACTTATTTTGGAGTGATG+GGG + chr5_3:13611460-13611479 Msa0800210:CDS 35.0%
CAGAAGAATTTCGAAGTCTT+TGG + chr5_3:13611488-13611507 Msa0800210:CDS 35.0%
CAAAAATGATTGTCTGGTTG+TGG - chr5_3:13611592-13611611 None:intergenic 35.0%
CAGTAGCAAAAATGATTGTC+TGG - chr5_3:13611598-13611617 None:intergenic 35.0%
TTCAACCTCATTAGCAACAA+CGG - chr5_3:13611621-13611640 None:intergenic 35.0%
TTGTTGCTAATGAGGTTGAA+GGG + chr5_3:13611621-13611640 Msa0800210:CDS 35.0%
!!! ACAGTTTTTGGTTGCAATGA+AGG + chr5_3:13611664-13611683 Msa0800210:CDS 35.0%
!!! CAGTTTTTGGTTGCAATGAA+GGG + chr5_3:13611665-13611684 Msa0800210:CDS 35.0%
ACCATCTGTTATTACGGAAA+CGG - chr5_3:13611699-13611718 None:intergenic 35.0%
GTTATCATAGGTTATGTGCA+TGG + chr5_3:13611762-13611781 Msa0800210:CDS 35.0%
TGTTAGATATTGCATTCCGT+AGG - chr5_3:13611793-13611812 None:intergenic 35.0%
CGGAATGCAATATCTAACAT+TGG + chr5_3:13611794-13611813 Msa0800210:CDS 35.0%
! TGAGGCATTTCATAGTCATA+TGG + chr5_3:13612024-13612043 Msa0800210:CDS 35.0%
! GAGGCATTTCATAGTCATAT+GGG + chr5_3:13612025-13612044 Msa0800210:CDS 35.0%
AGGCATTTCATAGTCATATG+GGG + chr5_3:13612026-13612045 Msa0800210:CDS 35.0%
! ATTTTGTTAAGCACTTCCAC+AGG + chr5_3:13612080-13612099 Msa0800210:CDS 35.0%
TAATTCCCAATATGGGAATG+CGG + chr5_3:13612144-13612163 Msa0800210:CDS 35.0%
GTGTCAAAATATCAAGCAGA+AGG + chr5_3:13612316-13612335 Msa0800210:CDS 35.0%
ATCAAGCAGAAGGTTATGTT+TGG + chr5_3:13612326-13612345 Msa0800210:CDS 35.0%
TGCATGTTCTTGTCTTAGAA+TGG + chr5_3:13612381-13612400 Msa0800210:CDS 35.0%
TGATGAATTTCCTAAGTCTC+TGG + chr5_3:13612459-13612478 Msa0800210:CDS 35.0%
ACAATGATGGTTCACACTAT+TGG + chr5_3:13612530-13612549 Msa0800210:CDS 35.0%
CAATGATGGTTCACACTATT+GGG + chr5_3:13612531-13612550 Msa0800210:CDS 35.0%
ACACTATTGGGATTCTCATT+TGG + chr5_3:13612543-13612562 Msa0800210:CDS 35.0%
! TTTGGTGTATCTTAGTAAGG+AGG + chr5_3:13612582-13612601 Msa0800210:CDS 35.0%
!! AAAGCAAAGTATTGCGATGA+AGG + chr5_3:13612682-13612701 Msa0800210:CDS 35.0%
TGTTAGTTACCTGTTCTTGC+AGG + chr5_3:13609294-13609313 Msa0800210:five_prime_UTR 40.0%
! TACTGATTACCTGCAAGAAC+AGG - chr5_3:13609306-13609325 None:intergenic 40.0%
AAAGGCAAGGAAAAGAGGAA+AGG - chr5_3:13609391-13609410 None:intergenic 40.0%
TCAGTAAAGGCAAGGAAAAG+AGG - chr5_3:13609396-13609415 None:intergenic 40.0%
TTCTCGTTTCAGTAAAGGCA+AGG - chr5_3:13609404-13609423 None:intergenic 40.0%
! CTTCGATTTGAAAAGAGCAG+GGG - chr5_3:13609671-13609690 None:intergenic 40.0%
! CCTTCGATTTGAAAAGAGCA+GGG - chr5_3:13609672-13609691 None:intergenic 40.0%
TGAGGTAGATTTAGTGACCA+GGG - chr5_3:13609695-13609714 None:intergenic 40.0%
ATGAGGTAGATTTAGTGACC+AGG - chr5_3:13609696-13609715 None:intergenic 40.0%
CACTATTCACCCAAACCAAA+AGG - chr5_3:13609872-13609891 None:intergenic 40.0%
!! TTTGGTTTGGGTGAATAGTG+AGG + chr5_3:13609872-13609891 Msa0800210:intron 40.0%
ATAGTGAGGTTCATCCTTTC+TGG + chr5_3:13609886-13609905 Msa0800210:intron 40.0%
TAGTGAGGTTCATCCTTTCT+GGG + chr5_3:13609887-13609906 Msa0800210:intron 40.0%
GAGAGGTTAATTGTGATGCT+TGG - chr5_3:13610064-13610083 None:intergenic 40.0%
! TGAAGGTTAAAGCACCCATA+TGG + chr5_3:13610286-13610305 Msa0800210:exon 40.0%
AATGCTGTTGTAGATTCACC+TGG + chr5_3:13610320-13610339 Msa0800210:CDS 40.0%
GCTTCCATTACTTCATTTCC+AGG - chr5_3:13610341-13610360 None:intergenic 40.0%
AGACATGAGAATGAAGCTGA+TGG + chr5_3:13610476-13610495 Msa0800210:CDS 40.0%
GACATGAGAATGAAGCTGAT+GGG + chr5_3:13610477-13610496 Msa0800210:CDS 40.0%
ACATGAGAATGAAGCTGATG+GGG + chr5_3:13610478-13610497 Msa0800210:CDS 40.0%
TGAAATTTCCTCGCCATCAA+CGG - chr5_3:13610696-13610715 None:intergenic 40.0%
ACATGCAGATGATGAGGATT+TGG + chr5_3:13610715-13610734 Msa0800210:CDS 40.0%
GATGTTTCGAAGCTGCTATT+TGG + chr5_3:13610857-13610876 Msa0800210:CDS 40.0%
!!! TAGAAGGTTTTAGGAGAGAC+AGG + chr5_3:13611005-13611024 Msa0800210:CDS 40.0%
!!! AGAAGGTTTTAGGAGAGACA+GGG + chr5_3:13611006-13611025 Msa0800210:CDS 40.0%
! GTGATGTTTTCGGATGCTAA+AGG + chr5_3:13611353-13611372 Msa0800210:CDS 40.0%
! GTAGGCTGCAACACTTATTT+TGG + chr5_3:13611450-13611469 Msa0800210:CDS 40.0%
GTTGTTGCTAATGAGGTTGA+AGG + chr5_3:13611620-13611639 Msa0800210:CDS 40.0%
CCATCTGTTATTACGGAAAC+GGG - chr5_3:13611698-13611717 None:intergenic 40.0%
CAGATGGTGATATAGCTATG+AGG + chr5_3:13611711-13611730 Msa0800210:CDS 40.0%
TAGATATTGCATTCCGTAGG+AGG - chr5_3:13611790-13611809 None:intergenic 40.0%
! TGCTTGGTGATCATGAAGTT+TGG + chr5_3:13611852-13611871 Msa0800210:CDS 40.0%
TCGGTCTTGAAGACAATAGA+TGG + chr5_3:13611912-13611931 Msa0800210:CDS 40.0%
ATTCGGGGAAATTTCTTTGC+AGG + chr5_3:13611980-13611999 Msa0800210:CDS 40.0%
CAGGAATAAGAACAACATCC+CGG + chr5_3:13611999-13612018 Msa0800210:CDS 40.0%
GAAAATATGCAACACACCTG+TGG - chr5_3:13612099-13612118 None:intergenic 40.0%
TAACACCGCATTCCCATATT+GGG - chr5_3:13612152-13612171 None:intergenic 40.0%
GGTACGGATAGTCATGAAAA+AGG + chr5_3:13612237-13612256 Msa0800210:CDS 40.0%
CATGCAAAATCGTTGTTCGA+TGG - chr5_3:13612367-13612386 None:intergenic 40.0%
ACAGCAATGATATGCTCACA+AGG - chr5_3:13612421-13612440 None:intergenic 40.0%
TGAGCATATCATTGCTGTGA+TGG + chr5_3:13612423-13612442 Msa0800210:CDS 40.0%
CGATTCAATACCAGAGACTT+AGG - chr5_3:13612472-13612491 None:intergenic 40.0%
! AGTCTCTGGTATTGAATCGT+TGG + chr5_3:13612473-13612492 Msa0800210:CDS 40.0%
TCGTTGGTCACAATTTGCAA+AGG + chr5_3:13612489-13612508 Msa0800210:CDS 40.0%
TTTGCAAAGGAGTCGATTAG+AGG + chr5_3:13612502-13612521 Msa0800210:CDS 40.0%
! ATCTAACGGATGAACTCAGT+AGG + chr5_3:13612656-13612675 Msa0800210:CDS 40.0%
!! CAAAGTATTGCGATGAAGGT+GGG + chr5_3:13612686-13612705 Msa0800210:CDS 40.0%
TTTACATGCTCAAGTGGAGT+TGG + chr5_3:13612717-13612736 Msa0800210:CDS 40.0%
ACAACCTTTGCTTCTTGAAC+AGG - chr5_3:13612761-13612780 None:intergenic 40.0%
TGTTCAAGAAGCAAAGGTTG+TGG + chr5_3:13612760-13612779 Msa0800210:CDS 40.0%
TCTCCATCTGGATTAAGAGT+GGG - chr5_3:13612874-13612893 None:intergenic 40.0%
TTCTCCATCTGGATTAAGAG+TGG - chr5_3:13612875-13612894 None:intergenic 40.0%
GTACGAACAAATTCTCCATC+TGG - chr5_3:13612886-13612905 None:intergenic 40.0%
! CCCTGCTCTTTTCAAATCGA+AGG + chr5_3:13609669-13609688 Msa0800210:intron 45.0%
! GCCTTCGATTTGAAAAGAGC+AGG - chr5_3:13609673-13609692 None:intergenic 45.0%
! TCTTTTCAAATCGAAGGCCC+TGG + chr5_3:13609675-13609694 Msa0800210:intron 45.0%
ATCCTTTCTGGGCATGATTG+AGG + chr5_3:13609898-13609917 Msa0800210:intron 45.0%
TCCTTTCTGGGCATGATTGA+GGG + chr5_3:13609899-13609918 Msa0800210:intron 45.0%
GTAGGAATCAAACCCTCTAG+TGG + chr5_3:13609987-13610006 Msa0800210:intron 45.0%
AGAATGAAGCTGATGGGGAA+GGG + chr5_3:13610483-13610502 Msa0800210:CDS 45.0%
GACAGTGAAGCAGATGATAC+TGG + chr5_3:13610518-13610537 Msa0800210:CDS 45.0%
GACAGTGAAGCAGATGATAC+TGG + chr5_3:13610518-13610537 Msa0800210:CDS 45.0%
GAAGCAGATGATACTGGTGA+CGG + chr5_3:13610524-13610543 Msa0800210:CDS 45.0%
!! GATGATAGTGGTGACAGTGA+AGG + chr5_3:13610578-13610597 Msa0800210:CDS 45.0%
!! TGATTATTCCGTTGATGGCG+AGG + chr5_3:13610685-13610704 Msa0800210:CDS 45.0%
GCAGATGATGAGGATTTGGA+CGG + chr5_3:13610719-13610738 Msa0800210:CDS 45.0%
!! AGATGAACGGTTTTGCTGTG+AGG + chr5_3:13610921-13610940 Msa0800210:CDS 45.0%
!! AACGGTTTTGCTGTGAGGAA+AGG + chr5_3:13610926-13610945 Msa0800210:CDS 45.0%
!!! GAAGGTTTTAGGAGAGACAG+GGG + chr5_3:13611007-13611026 Msa0800210:CDS 45.0%
!!! AAGGTTTTAGGAGAGACAGG+GGG + chr5_3:13611008-13611027 Msa0800210:CDS 45.0%
CCACACCTGGTTTCATGTTT+CGG - chr5_3:13611061-13611080 None:intergenic 45.0%
GATCACAACTTTGGCAATGC+CGG + chr5_3:13611151-13611170 Msa0800210:CDS 45.0%
TTTGGCAATGCCGGAATCAA+AGG + chr5_3:13611160-13611179 Msa0800210:CDS 45.0%
CTATGAGCAGCCTTTGATTC+CGG - chr5_3:13611173-13611192 None:intergenic 45.0%
TGCTCATAGGAAGCTGACTA+AGG + chr5_3:13611184-13611203 Msa0800210:CDS 45.0%
GTTACCAACTTTGGCAATGC+CGG + chr5_3:13611221-13611240 Msa0800210:CDS 45.0%
! TGTTGAACATACGGTTGGTG+CGG + chr5_3:13611424-13611443 Msa0800210:CDS 45.0%
TACTGCCGTTGTTGCTAATG+AGG + chr5_3:13611613-13611632 Msa0800210:CDS 45.0%
AGGTTGAAGGGACATATGTG+TGG + chr5_3:13611633-13611652 Msa0800210:CDS 45.0%
! GTGGCTGTTGGAACAGTTTT+TGG + chr5_3:13611652-13611671 Msa0800210:CDS 45.0%
CCCGTTTCCGTAATAACAGA+TGG + chr5_3:13611695-13611714 Msa0800210:CDS 45.0%
TGTGGGCAGCAAGTCATATT+CGG + chr5_3:13611963-13611982 Msa0800210:CDS 45.0%
ACTATGAAATGCCTCACACC+GGG - chr5_3:13612020-13612039 None:intergenic 45.0%
GACTATGAAATGCCTCACAC+CGG - chr5_3:13612021-13612040 None:intergenic 45.0%
GTAACACCGCATTCCCATAT+TGG - chr5_3:13612153-13612172 None:intergenic 45.0%
GGTTGCTAGACATGCGAATT+TGG + chr5_3:13612564-13612583 Msa0800210:CDS 45.0%
!! GCAAAGTATTGCGATGAAGG+TGG + chr5_3:13612685-13612704 Msa0800210:CDS 45.0%
CCTTTGCTTCTTGAACAGGA+AGG - chr5_3:13612757-13612776 None:intergenic 45.0%
CCTTCCTGTTCAAGAAGCAA+AGG + chr5_3:13612754-13612773 Msa0800210:CDS 45.0%
TGTCCCACTCTTAATCCAGA+TGG + chr5_3:13612868-13612887 Msa0800210:CDS 45.0%
TAACGGCCGCGTACCTTAAA+CGG - chr5_3:13609189-13609208 None:intergenic 50.0%
! TTTAAGGTACGCGGCCGTTA+TGG + chr5_3:13609189-13609208 Msa0800210:five_prime_UTR 50.0%
TTAAGGTACGCGGCCGTTAT+GGG + chr5_3:13609190-13609209 Msa0800210:five_prime_UTR 50.0%
TCCCTCAATCATGCCCAGAA+AGG - chr5_3:13609903-13609922 None:intergenic 50.0%
TTTCTGGGCATGATTGAGGG+AGG + chr5_3:13609902-13609921 Msa0800210:intron 50.0%
TCTAGTGGGGCCATGAGTAA+GGG + chr5_3:13609929-13609948 Msa0800210:intron 50.0%
GAGAATGAAGCTGATGGGGA+AGG + chr5_3:13610482-13610501 Msa0800210:CDS 50.0%
GAATGAAGCTGATGGGGAAG+GGG + chr5_3:13610484-13610503 Msa0800210:CDS 50.0%
! GATGGGGAAGGGGATGATTT+TGG + chr5_3:13610494-13610513 Msa0800210:CDS 50.0%
!! GATGATACTGGTGACGGTGA+AGG + chr5_3:13610554-13610573 Msa0800210:CDS 50.0%
GACGGTGAAGGAGATGATAG+TGG + chr5_3:13610566-13610585 Msa0800210:CDS 50.0%
GGTGACAGTGAAGGAGATAG+TGG + chr5_3:13610587-13610606 Msa0800210:CDS 50.0%
GGACGGAAATTCTGACGATG+TGG + chr5_3:13610736-13610755 Msa0800210:CDS 50.0%
! GCTGCTATTTGGGAGTCTTG+AGG + chr5_3:13610868-13610887 Msa0800210:CDS 50.0%
GTGGTCCGAAACATGAAACC+AGG + chr5_3:13611053-13611072 Msa0800210:CDS 50.0%
CCGAAACATGAAACCAGGTG+TGG + chr5_3:13611058-13611077 Msa0800210:CDS 50.0%
! TTTGGCTTCACAACCACACC+TGG - chr5_3:13611074-13611093 None:intergenic 50.0%
CGGAATCAAAGGCTGCTCAT+AGG + chr5_3:13611171-13611190 Msa0800210:CDS 50.0%
GATTCCGGCATTGCCAAAGT+TGG - chr5_3:13611158-13611177 None:intergenic 50.0%
TACCTTATCATACCCGCCAG+CGG - chr5_3:13611285-13611304 None:intergenic 50.0%
AGGGACATATGTGTGGCTGT+TGG + chr5_3:13611640-13611659 Msa0800210:CDS 50.0%
TATGTGCATGGCACCTCCTA+CGG + chr5_3:13611774-13611793 Msa0800210:CDS 50.0%
GTGGGCAGCAAGTCATATTC+GGG + chr5_3:13611964-13611983 Msa0800210:CDS 50.0%
TGGGCAGCAAGTCATATTCG+GGG + chr5_3:13611965-13611984 Msa0800210:CDS 50.0%
AAGAACAACATCCCGGTGTG+AGG + chr5_3:13612006-13612025 Msa0800210:CDS 50.0%
ACCTAGCACGAGCAATGCAA+TGG + chr5_3:13612783-13612802 Msa0800210:CDS 50.0%
CCTAGCACGAGCAATGCAAT+GGG + chr5_3:13612784-13612803 Msa0800210:CDS 50.0%
GCAATGCAATGGGTCATCGT+CGG + chr5_3:13612794-13612813 Msa0800210:CDS 50.0%
TCACAGACGTGTGGGATATG+TGG + chr5_3:13612820-13612839 Msa0800210:CDS 50.0%
GCAGCATGCGAGACCCATAA+CGG - chr5_3:13609206-13609225 None:intergenic 55.0%
!! ATTGAGGGAGGCACCTCTAG+TGG + chr5_3:13609914-13609933 Msa0800210:intron 55.0%
!! TTGAGGGAGGCACCTCTAGT+GGG + chr5_3:13609915-13609934 Msa0800210:intron 55.0%
CTTACTCATGGCCCCACTAG+AGG - chr5_3:13609930-13609949 None:intergenic 55.0%
CTCTAGTGGGGCCATGAGTA+AGG + chr5_3:13609928-13609947 Msa0800210:intron 55.0%
TGGGGCCATGAGTAAGGGAA+GGG + chr5_3:13609934-13609953 Msa0800210:intron 55.0%
CACCTCCCTTCCCTTACTCA+TGG - chr5_3:13609942-13609961 None:intergenic 55.0%
! GAAGGGAGGTGCGAGGAAAA+GGG + chr5_3:13609951-13609970 Msa0800210:intron 55.0%
AGACAGGGGGTTAACAGCAG+AGG + chr5_3:13611021-13611040 Msa0800210:CDS 55.0%
! GCTGGCGGGTATGATAAGGT+AGG + chr5_3:13611284-13611303 Msa0800210:CDS 55.0%
! GAACATACGGTTGGTGCGGA+TGG + chr5_3:13611428-13611447 Msa0800210:CDS 55.0%
! ATACGGTTGGTGCGGATGGT+AGG + chr5_3:13611432-13611451 Msa0800210:CDS 55.0%
!! CGGTGTTACAGACCAGTCTG+AGG + chr5_3:13612164-13612183 Msa0800210:CDS 55.0%
CCTCTCAAGTGACCTCAGAC+TGG - chr5_3:13612179-13612198 None:intergenic 55.0%
! CCAGTCTGAGGTCACTTGAG+AGG + chr5_3:13612176-13612195 Msa0800210:CDS 55.0%
CCCATTGCATTGCTCGTGCT+AGG - chr5_3:13612787-13612806 None:intergenic 55.0%
ACGTGTGGGATATGTGGTGC+AGG + chr5_3:13612826-13612845 Msa0800210:CDS 55.0%
TGTGGGATATGTGGTGCAGG+TGG + chr5_3:13612829-13612848 Msa0800210:CDS 55.0%
!! TGAGGGAGGCACCTCTAGTG+GGG + chr5_3:13609916-13609935 Msa0800210:intron 60.0%
GTGGGGCCATGAGTAAGGGA+AGG + chr5_3:13609933-13609952 Msa0800210:intron 60.0%
GGCCATGAGTAAGGGAAGGG+AGG + chr5_3:13609937-13609956 Msa0800210:intron 60.0%
! AGTAAGGGAAGGGAGGTGCG+AGG + chr5_3:13609944-13609963 Msa0800210:intron 60.0%
! GGAAGGGAGGTGCGAGGAAA+AGG + chr5_3:13609950-13609969 Msa0800210:intron 60.0%
! GGAGGTGCGAGGAAAAGGGT+TGG + chr5_3:13609955-13609974 Msa0800210:intron 60.0%
ACAGCAGAGGAACGCAAGCG+TGG + chr5_3:13611034-13611053 Msa0800210:CDS 60.0%
GGTGCGTTTGCAAATGCCGC+TGG + chr5_3:13611266-13611285 Msa0800210:CDS 60.0%
GCGTTTGCAAATGCCGCTGG+CGG + chr5_3:13611269-13611288 Msa0800210:CDS 60.0%
CGTTTGCAAATGCCGCTGGC+GGG + chr5_3:13611270-13611289 Msa0800210:CDS 60.0%
! TGCCGCTGGCGGGTATGATA+AGG + chr5_3:13611280-13611299 Msa0800210:CDS 60.0%
GTCGGCGATCACAGACGTGT+GGG + chr5_3:13612812-13612831 Msa0800210:CDS 60.0%
CGTCGGCGATCACAGACGTG+TGG + chr5_3:13612811-13612830 Msa0800210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13609182 13612951 13609182 ID=Msa0800210;Name=Msa0800210
chr5_3 mRNA 13609182 13612951 13609182 ID=Msa0800210-mRNA-1;Parent=Msa0800210;Name=Msa0800210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=389|0.66|0.5|1|0.66|0.5|4|0|838
chr5_3 exon 13609182 13609537 13609182 ID=Msa0800210-mRNA-1:exon:5621;Parent=Msa0800210-mRNA-1
chr5_3 exon 13610272 13610367 13610272 ID=Msa0800210-mRNA-1:exon:5622;Parent=Msa0800210-mRNA-1
chr5_3 exon 13610458 13611099 13610458 ID=Msa0800210-mRNA-1:exon:5623;Parent=Msa0800210-mRNA-1
chr5_3 exon 13611140 13612951 13611140 ID=Msa0800210-mRNA-1:exon:5624;Parent=Msa0800210-mRNA-1
chr5_3 five_prime_UTR 13609182 13609537 13609182 ID=Msa0800210-mRNA-1:five_prime_utr;Parent=Msa0800210-mRNA-1
chr5_3 five_prime_UTR 13610272 13610304 13610272 ID=Msa0800210-mRNA-1:five_prime_utr;Parent=Msa0800210-mRNA-1
chr5_3 CDS 13610305 13610367 13610305 ID=Msa0800210-mRNA-1:cds;Parent=Msa0800210-mRNA-1
chr5_3 CDS 13610458 13611099 13610458 ID=Msa0800210-mRNA-1:cds;Parent=Msa0800210-mRNA-1
chr5_3 CDS 13611140 13612951 13611140 ID=Msa0800210-mRNA-1:cds;Parent=Msa0800210-mRNA-1
Gene Sequence

>Msa0800210

ATGGAATCGAATGCAAATGCTGTTGTAGATTCACCTGGAAATGAAGTAATGGAAGCTTATTATCAAGCAATGGATGAAATTAGACATGAGAATGAAGCTGATGGGGAAGGGGATGATTTTGGTGACAGTGAAGCAGATGATACTGGTGACAGTGAAGCAGATGATACTGGTGACGGTGAAGGAGATGATAGTGGTGACAGTGAAGGAGATAGTGGTGACGATGAAGTTCAGTTATCAGTAGAAGAAAACGAAAGTGATGAAGCTTTCTTAGGTTCTGAATACGATGAAGATGATTATTCCGTTGATGGCGAGGAAATTTCACATGCAGATGATGAGGATTTGGACGGAAATTCTGACGATGTGGATGAGTCAATATTTTCAGTTCTAAGTGAAGATGAATCAATTGTAATAGACAGTGTTGACGATATTGTAAAGATGGATATGCATAATTTGCAAAATGAAGATGTTTCGAAGCTGCTATTTGGGAGTCTTGAGGTTGCCTACAATTTTTACTGTTGGTTTGCAAAGATGAACGGTTTTGCTGTGAGGAAAGGTCAAGTAATAAAAAATAAGAATGGAGATGTTCTTCAACAAACATTTGTGTGCAATCTAGAAGGTTTTAGGAGAGACAGGGGGTTAACAGCAGAGGAACGCAAGCGTGGTCCGAAACATGAAACCAGGTGTGGTTGTGAAGCCAAATTTCGTTTTTCACCTTTGATCACAACTTTGGCAATGCCGGAATCAAAGGCTGCTCATAGGAAGCTGACTAAGGCTGATAAGATTCAAGTTACCAACTTTGGCAATGCCGGAATCAAAGTTACGCAAATGATTGGTGCGTTTGCAAATGCCGCTGGCGGGTATGATAAGGTAGGATTTCTGAAAAAGGATTTACACAATCAAATTCTAAGACAAAGAAAAGTGATGTTTTCGGATGCTAAAGGTGCCGTTACGTATCTTAAAGATTTGCGTCGTAAAGATCCACTGATGTTTGTTGAACATACGGTTGGTGCGGATGGTAGGCTGCAACACTTATTTTGGAGTGATGGGGTAAGTCAGAAGAATTTCGAAGTCTTTGGTGATGTTGTTGCTTTCGATGCAACATACAAGAAAAATAAGTACAGTTGTCCATTTGTTGTTTTTTCTGGTGTTAATCACCACAACCAGACAATCATTTTTGCTACTGCCGTTGTTGCTAATGAGGTTGAAGGGACATATGTGTGGCTGTTGGAACAGTTTTTGGTTGCAATGAAGGGTAAGAGTCCCGTTTCCGTAATAACAGATGGTGATATAGCTATGAGGAATGCGATCAAGAAAGTATTTCCCAAGAGTTATCATAGGTTATGTGCATGGCACCTCCTACGGAATGCAATATCTAACATTGGTAATCTTGATTTCATCCCATTTTTCAAAAGATGTATGCTTGGTGATCATGAAGTTTGGAAATTTGAAAATCTTTGGAATGATATGGTTGAAAAGTTCGGTCTTGAAGACAATAGATGGATAAATGAATTGTATGAAAAAAGGAAAATGTGGGCAGCAAGTCATATTCGGGGAAATTTCTTTGCAGGAATAAGAACAACATCCCGGTGTGAGGCATTTCATAGTCATATGGGGCAGTTTATACACTCCAAAATGAATATGACTGATTTTGTTAAGCACTTCCACAGGTGTGTTGCATATTTTCGTTTCAAAGAGGTCCAAGCTGATTTTAATTCCCAATATGGGAATGCGGTGTTACAGACCAGTCTGAGGTCACTTGAGAGGTCTGCTTCAAATCAATTTACCAAAGAAATATTCGAGATGGTACGGATAGTCATGAAAAAGGTAACCCTAATATCGATACTTGATACTCAAGAGATGTCTTGCTTTTCAATTTATTCAGTGTCAAAATATCAAGCAGAAGGTTATGTTTGGTGTGTTTCTCATAGTCCATCGAACAACGATTTTGCATGTTCTTGTCTTAGAATGGAATCTATTGGAATTCCTTGTGAGCATATCATTGCTGTGATGGTATATCTTGATATTGATGAATTTCCTAAGTCTCTGGTATTGAATCGTTGGTCACAATTTGCAAAGGAGTCGATTAGAGGTAATTACAATGATGGTTCACACTATTGGGATTCTCATTTGGTTGCTAGACATGCGAATTTGGTGTATCTTAGTAAGGAGGTTTCTGATTTATCATATAAGGATGTTGATGATTATAAAAAATATTTAGAATATCTAACGGATGAACTCAGTAGGCTTAAAGCAAAGTATTGCGATGAAGGTGGGCCTGATAATTTACATGCTCAAGTGGAGTTGGATAACATACTGAATCCTTCCTGTTCAAGAAGCAAAGGTTGTGGACCTAGCACGAGCAATGCAATGGGTCATCGTCGGCGATCACAGACGTGTGGGATATGTGGTGCAGGTGGACACAATAGACGATCTTGTCCCACTCTTAATCCAGATGGAGAATTTGTTCGTACTAGTTCATTACAAACAGAATCCTTGCGATTAAGTAATGATATTTAA

Protein sequence

>Msa0800210

MESNANAVVDSPGNEVMEAYYQAMDEIRHENEADGEGDDFGDSEADDTGDSEADDTGDGEGDDSGDSEGDSGDDEVQLSVEENESDEAFLGSEYDEDDYSVDGEEISHADDEDLDGNSDDVDESIFSVLSEDESIVIDSVDDIVKMDMHNLQNEDVSKLLFGSLEVAYNFYCWFAKMNGFAVRKGQVIKNKNGDVLQQTFVCNLEGFRRDRGLTAEERKRGPKHETRCGCEAKFRFSPLITTLAMPESKAAHRKLTKADKIQVTNFGNAGIKVTQMIGAFANAAGGYDKVGFLKKDLHNQILRQRKVMFSDAKGAVTYLKDLRRKDPLMFVEHTVGADGRLQHLFWSDGVSQKNFEVFGDVVAFDATYKKNKYSCPFVVFSGVNHHNQTIIFATAVVANEVEGTYVWLLEQFLVAMKGKSPVSVITDGDIAMRNAIKKVFPKSYHRLCAWHLLRNAISNIGNLDFIPFFKRCMLGDHEVWKFENLWNDMVEKFGLEDNRWINELYEKRKMWAASHIRGNFFAGIRTTSRCEAFHSHMGQFIHSKMNMTDFVKHFHRCVAYFRFKEVQADFNSQYGNAVLQTSLRSLERSASNQFTKEIFEMVRIVMKKVTLISILDTQEMSCFSIYSVSKYQAEGYVWCVSHSPSNNDFACSCLRMESIGIPCEHIIAVMVYLDIDEFPKSLVLNRWSQFAKESIRGNYNDGSHYWDSHLVARHANLVYLSKEVSDLSYKDVDDYKKYLEYLTDELSRLKAKYCDEGGPDNLHAQVELDNILNPSCSRSKGCGPSTSNAMGHRRRSQTCGICGAGGHNRRSCPTLNPDGEFVRTSSLQTESLRLSNDI*