Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533440 | AES86908.2 | 84.889 | 225 | 31 | 2 | 1 | 223 | 1 | 224 | 1.09e-121 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533440 | sp|F4J9A8|RLP45_ARATH | 37.445 | 227 | 132 | 6 | 6 | 224 | 6 | 230 | 4.86e-34 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533440 | G7JP54 | 84.889 | 225 | 31 | 2 | 1 | 223 | 1 | 224 | 5.19e-122 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0533440 | Msa0533460 | 0.845242 | 4.589586e-59 | -8.615850e-47 |
| Msa0533440 | Msa0589610 | 0.801448 | 8.961384e-49 | -8.615850e-47 |
| Msa0533440 | Msa0752580 | 0.813416 | 2.588686e-51 | -8.615850e-47 |
| Msa0533440 | Msa0754500 | 0.810974 | 8.825231e-51 | -8.615850e-47 |
| Msa0533440 | Msa1006400 | 0.802962 | 4.372563e-49 | -8.615850e-47 |
| Msa0533440 | Msa1072490 | 0.817472 | 3.240351e-52 | -8.615850e-47 |
| Msa0533440 | Msa1073500 | 0.842556 | 2.406364e-58 | -8.615850e-47 |
| Msa0533440 | Msa1279860 | 0.800170 | 1.634026e-48 | -8.615850e-47 |
| Msa0533440 | Msa1279870 | 0.803506 | 3.374170e-49 | -8.615850e-47 |
| Msa0533440 | Msa1285820 | 0.803873 | 2.831601e-49 | -8.615850e-47 |
| Msa0533440 | Msa1285830 | 0.810249 | 1.266309e-50 | -8.615850e-47 |
| Msa0533440 | Msa1287570 | 0.827038 | 1.950489e-54 | -8.615850e-47 |
| Msa0533440 | Msa1423970 | 0.809788 | 1.591721e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533440 | MtrunA17_Chr4g0006941 | 80.088 | 226 | 39 | 3 | 1 | 223 | 13 | 235 | 5.80e-110 | 338 |
| Msa0533440 | MtrunA17_Chr4g0006421 | 65.455 | 275 | 42 | 4 | 1 | 223 | 1 | 274 | 2.73e-102 | 318 |
| Msa0533440 | MtrunA17_Chr4g0006861 | 64.388 | 278 | 43 | 3 | 1 | 223 | 1 | 277 | 1.93e-99 | 310 |
| Msa0533440 | MtrunA17_Chr4g0006951 | 70.166 | 181 | 48 | 3 | 1 | 177 | 1 | 179 | 1.17e-80 | 241 |
| Msa0533440 | MtrunA17_Chr4g0006911 | 82.812 | 128 | 20 | 1 | 1 | 126 | 1 | 128 | 6.76e-71 | 213 |
| Msa0533440 | MtrunA17_Chr4g0006881 | 76.087 | 138 | 21 | 2 | 1 | 126 | 1 | 138 | 5.72e-67 | 204 |
| Msa0533440 | MtrunA17_Chr8g0372861 | 38.164 | 207 | 95 | 5 | 26 | 226 | 27 | 206 | 1.03e-27 | 110 |
| Msa0533440 | MtrunA17_Chr2g0283921 | 37.198 | 207 | 96 | 6 | 26 | 226 | 29 | 207 | 7.30e-24 | 99.8 |
| Msa0533440 | MtrunA17_Chr5g0439461 | 31.308 | 214 | 115 | 7 | 26 | 214 | 36 | 242 | 6.31e-13 | 67.8 |
| Msa0533440 | MtrunA17_Chr2g0284871 | 30.918 | 207 | 113 | 9 | 9 | 201 | 22 | 212 | 2.30e-12 | 66.2 |
| Msa0533440 | MtrunA17_Chr6g0465291 | 29.915 | 234 | 143 | 9 | 10 | 231 | 38 | 262 | 2.31e-12 | 66.2 |
| Msa0533440 | MtrunA17_Chr6g0463281 | 30.734 | 218 | 100 | 10 | 27 | 230 | 89 | 269 | 4.80e-12 | 65.1 |
| Msa0533440 | MtrunA17_Chr4g0004161 | 30.244 | 205 | 130 | 7 | 13 | 215 | 9 | 202 | 5.10e-11 | 62.0 |
| Msa0533440 | MtrunA17_Chr2g0284861 | 32.450 | 151 | 83 | 5 | 27 | 167 | 41 | 182 | 6.43e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533440 | AT2G25470.3 | 38.532 | 218 | 122 | 6 | 11 | 219 | 15 | 229 | 5.90e-33 | 126 |
| Msa0533440 | AT2G25470.2 | 38.532 | 218 | 122 | 6 | 11 | 219 | 15 | 229 | 6.36e-33 | 126 |
| Msa0533440 | AT3G53240.2 | 38.571 | 210 | 119 | 5 | 23 | 224 | 2 | 209 | 1.68e-32 | 125 |
| Msa0533440 | AT2G25470.1 | 38.318 | 214 | 119 | 7 | 16 | 219 | 1 | 211 | 2.57e-32 | 124 |
| Msa0533440 | AT1G74180.1 | 41.784 | 213 | 112 | 5 | 11 | 214 | 11 | 220 | 1.73e-29 | 116 |
| Msa0533440 | AT1G74180.2 | 41.627 | 209 | 110 | 5 | 16 | 215 | 2 | 207 | 1.24e-28 | 114 |
| Msa0533440 | AT1G58190.1 | 36.771 | 223 | 121 | 6 | 9 | 224 | 10 | 219 | 1.26e-28 | 114 |
| Msa0533440 | AT1G58190.2 | 36.771 | 223 | 121 | 6 | 9 | 224 | 10 | 219 | 1.60e-28 | 113 |
| Msa0533440 | AT1G58190.2 | 37.607 | 117 | 69 | 2 | 106 | 219 | 199 | 314 | 1.16e-11 | 64.3 |
| Msa0533440 | AT1G58190.3 | 37.864 | 206 | 108 | 8 | 22 | 219 | 32 | 225 | 6.05e-27 | 108 |
| Msa0533440 | AT5G49290.2 | 34.389 | 221 | 136 | 5 | 11 | 224 | 11 | 229 | 4.88e-26 | 106 |
| Msa0533440 | AT5G49290.3 | 34.389 | 221 | 136 | 5 | 11 | 224 | 11 | 229 | 5.00e-26 | 106 |
| Msa0533440 | AT5G49290.4 | 34.101 | 217 | 133 | 6 | 16 | 224 | 1 | 215 | 9.07e-26 | 105 |
| Msa0533440 | AT5G49290.6 | 34.101 | 217 | 133 | 6 | 16 | 224 | 1 | 215 | 9.07e-26 | 105 |
| Msa0533440 | AT5G49290.8 | 34.101 | 217 | 133 | 6 | 16 | 224 | 1 | 215 | 9.07e-26 | 105 |
| Msa0533440 | AT5G49290.1 | 34.434 | 212 | 129 | 6 | 16 | 219 | 1 | 210 | 1.13e-25 | 105 |
| Msa0533440 | AT1G74190.1 | 36.239 | 218 | 126 | 7 | 15 | 224 | 14 | 226 | 4.26e-24 | 100 |
| Msa0533440 | AT1G07390.4 | 34.956 | 226 | 128 | 7 | 11 | 219 | 19 | 242 | 4.69e-23 | 97.8 |
| Msa0533440 | AT1G07390.5 | 34.956 | 226 | 128 | 7 | 11 | 219 | 19 | 242 | 5.19e-23 | 97.8 |
| Msa0533440 | AT1G54470.1 | 35.945 | 217 | 116 | 9 | 11 | 214 | 110 | 316 | 1.09e-22 | 95.9 |
| Msa0533440 | AT1G74170.2 | 35.470 | 234 | 130 | 7 | 1 | 217 | 1 | 230 | 4.76e-22 | 94.7 |
| Msa0533440 | AT1G74170.2 | 36.220 | 127 | 77 | 2 | 102 | 224 | 185 | 311 | 2.59e-11 | 63.5 |
| Msa0533440 | AT3G53240.1 | 36.471 | 170 | 100 | 4 | 63 | 224 | 4 | 173 | 9.93e-22 | 94.0 |
| Msa0533440 | AT3G53240.3 | 36.471 | 170 | 100 | 4 | 63 | 224 | 4 | 173 | 9.93e-22 | 94.0 |
| Msa0533440 | AT5G49290.5 | 35.028 | 177 | 106 | 5 | 55 | 224 | 13 | 187 | 1.07e-18 | 85.1 |
| Msa0533440 | AT5G49290.7 | 35.465 | 172 | 102 | 5 | 55 | 219 | 13 | 182 | 1.18e-18 | 85.1 |
| Msa0533440 | AT1G07390.1 | 34.826 | 201 | 115 | 6 | 33 | 219 | 1 | 199 | 2.81e-17 | 80.9 |
| Msa0533440 | AT1G07390.3 | 34.826 | 201 | 115 | 6 | 33 | 219 | 1 | 199 | 2.94e-17 | 80.9 |
| Msa0533440 | AT4G04220.1 | 32.000 | 200 | 129 | 4 | 27 | 222 | 24 | 220 | 2.25e-16 | 78.2 |
| Msa0533440 | AT1G74170.1 | 36.220 | 127 | 77 | 2 | 102 | 224 | 117 | 243 | 2.95e-11 | 63.2 |
Find 37 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGACATTAGATCTTTC+AGG | 0.199164 | 4_1:+8399163 | Msa0533440:CDS |
| AGTGAAGCATTTAACATATT+AGG | 0.275385 | 4_1:-8397505 | None:intergenic |
| TGCATGTATTCACATCATTA+AGG | 0.291680 | 4_1:+8399570 | Msa0533440:CDS |
| AAGAGAGTCAAGTGCTCTTC+TGG | 0.312216 | 4_1:+8397433 | Msa0533440:CDS |
| GAGATAGCAATTGTTGTGTT+TGG | 0.314727 | 4_1:+8397410 | Msa0533440:CDS |
| GCTCTAACAACTTTGAAGTT+TGG | 0.316753 | 4_1:+8399232 | Msa0533440:CDS |
| CCCAATTCTTTGTTATTGTA+AGG | 0.323636 | 4_1:-8397370 | None:intergenic |
| TCCTTACAATAACAAAGAAT+TGG | 0.324291 | 4_1:+8397369 | Msa0533440:CDS |
| TCTAGGATTTCTGAGATCTA+AGG | 0.365683 | 4_1:+8399490 | Msa0533440:intron |
| CCAACCTTGAAAATTGTTGT+AGG | 0.377264 | 4_1:-8397566 | None:intergenic |
| TTTGTGACATTGATGTTAAT+GGG | 0.385784 | 4_1:+8397262 | Msa0533440:CDS |
| GCATTTAACATATTAGGATC+AGG | 0.405503 | 4_1:-8397499 | None:intergenic |
| TAGAGAAAGAACAGTTCAAT+TGG | 0.406580 | 4_1:-8399613 | None:intergenic |
| CCTTACAATAACAAAGAATT+GGG | 0.408897 | 4_1:+8397370 | Msa0533440:CDS |
| GTTTCCTAGACTTAAAAGAT+TGG | 0.424986 | 4_1:+8399144 | Msa0533440:CDS |
| ATAACAAAGAATTGGGTTCA+TGG | 0.436613 | 4_1:+8397377 | Msa0533440:CDS |
| TCTGAGATCTAAGGAGTTGG+AGG | 0.466198 | 4_1:+8399499 | Msa0533440:CDS |
| TGGAGACATTAGATCTTTCA+GGG | 0.480082 | 4_1:+8399164 | Msa0533440:CDS |
| CACTACATCTTGTCAAATAT+AGG | 0.490910 | 4_1:+8397343 | Msa0533440:CDS |
| TAACAAAGAATTGGGTTCAT+GGG | 0.499656 | 4_1:+8397378 | Msa0533440:CDS |
| TCAATGTCACAAAATACAAA+AGG | 0.506445 | 4_1:-8397252 | None:intergenic |
| ATTTCTGAGATCTAAGGAGT+TGG | 0.511604 | 4_1:+8399496 | Msa0533440:CDS |
| TTGATGTTAATGGGAAATCA+AGG | 0.512914 | 4_1:+8397271 | Msa0533440:CDS |
| GTTTGGTTCTGAATATTCGA+TGG | 0.516364 | 4_1:+8399249 | Msa0533440:CDS |
| CTTATATAGTAAACTCTGGA+TGG | 0.520708 | 4_1:-8397473 | None:intergenic |
| TGCTTAGAGAAGGAGAGAAT+AGG | 0.521198 | 4_1:+8397304 | Msa0533440:CDS |
| AGAAGGCGTAGCTCTTCAAA+TGG | 0.523259 | 4_1:-8397535 | None:intergenic |
| GCAGTCAATCCATTTAAACT+TGG | 0.528828 | 4_1:-8399211 | None:intergenic |
| AACTGTTCTTTCTCTACTCT+AGG | 0.531762 | 4_1:+8399620 | Msa0533440:CDS |
| CATTTAACATATTAGGATCA+GGG | 0.538655 | 4_1:-8397498 | None:intergenic |
| ATGGAAAACTTCTCTGCTCA+AGG | 0.575312 | 4_1:+8399268 | Msa0533440:CDS |
| GGGTCTTATATAGTAAACTC+TGG | 0.587622 | 4_1:-8397477 | None:intergenic |
| ATGTAACGGTTGCTTAGAGA+AGG | 0.588445 | 4_1:+8397294 | Msa0533440:CDS |
| ATGGGAAATCAAGGATGTAA+CGG | 0.594838 | 4_1:+8397280 | Msa0533440:CDS |
| ATTTAACATATTAGGATCAG+GGG | 0.617878 | 4_1:-8397497 | None:intergenic |
| CAAGGTTGGATTGGCAACGA+AGG | 0.630954 | 4_1:+8397580 | Msa0533440:CDS |
| TGTTGTAGGACAAGTCGAGA+AGG | 0.656968 | 4_1:-8397552 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTTCAATAATTTATTTA+TGG | + | chr4_1:8399297-8399316 | Msa0533440:intron | 10.0% |
| !!! | TTTCAAATTAATATTTTCTT+CGG | - | chr4_1:8399368-8399387 | None:intergenic | 10.0% |
| !!! | AAGAGAGATATTTTTTTTAT+AGG | + | chr4_1:8397922-8397941 | Msa0533440:intron | 15.0% |
| !! | ATTACTTAGTTTATAAGAAA+TGG | + | chr4_1:8398195-8398214 | Msa0533440:intron | 15.0% |
| !! | GACAATATTAAAATAGATAT+CGG | + | chr4_1:8398293-8398312 | Msa0533440:intron | 15.0% |
| !! | TAGTAAATAAATGAAGAATA+AGG | - | chr4_1:8398627-8398646 | None:intergenic | 15.0% |
| !! | CTCACATAATAATATTATTT+AGG | + | chr4_1:8398824-8398843 | Msa0533440:intron | 15.0% |
| !!! | TTCAAATTAATATTTTCTTC+GGG | - | chr4_1:8399367-8399386 | None:intergenic | 15.0% |
| !! | TTGTTTACAACACTATAAAA+AGG | - | chr4_1:8397973-8397992 | None:intergenic | 20.0% |
| !!! | TTTTTATAGTGTTGTAAACA+AGG | + | chr4_1:8397972-8397991 | Msa0533440:intron | 20.0% |
| !! | TATTTACAATATCTTGCATA+TGG | + | chr4_1:8398323-8398342 | Msa0533440:intron | 20.0% |
| !! | TAGTTATCTAGTATATCAAT+AGG | + | chr4_1:8398379-8398398 | Msa0533440:intron | 20.0% |
| !!! | TCAATAGGTCTTATTAAATT+TGG | + | chr4_1:8398394-8398413 | Msa0533440:intron | 20.0% |
| !! | CAAATAGTCATTAAAATTCA+TGG | + | chr4_1:8398730-8398749 | Msa0533440:intron | 20.0% |
| !!! | TCATGAAGTTTTTTTTAAAG+AGG | + | chr4_1:8398762-8398781 | Msa0533440:intron | 20.0% |
| !!! | TTGTTTTTTATTGACCAATT+CGG | + | chr4_1:8398920-8398939 | Msa0533440:intron | 20.0% |
| !!! | ATTAATCATGTTTCTTTTGA+AGG | + | chr4_1:8399121-8399140 | Msa0533440:intron | 20.0% |
| !!! | TTAATCATGTTTCTTTTGAA+GGG | + | chr4_1:8399122-8399141 | Msa0533440:intron | 20.0% |
| !!! | ATTAACAAAAGCTTTTCATT+AGG | + | chr4_1:8399391-8399410 | Msa0533440:intron | 20.0% |
| !! | ATCATTATGTATATTGTTCT+AGG | + | chr4_1:8399473-8399492 | Msa0533440:intron | 20.0% |
| ! | ACATTTCTCAAAAATGAAGT+TGG | + | chr4_1:8397213-8397232 | Msa0533440:exon | 25.0% |
| ! | CATTTCTCAAAAATGAAGTT+GGG | + | chr4_1:8397214-8397233 | Msa0533440:exon | 25.0% |
| ! | TCAATGTCACAAAATACAAA+AGG | - | chr4_1:8397255-8397274 | None:intergenic | 25.0% |
| !! | TTTTGTGACATTGATGTTAA+TGG | + | chr4_1:8397261-8397280 | Msa0533440:CDS | 25.0% |
| ! | TTTGTGACATTGATGTTAAT+GGG | + | chr4_1:8397262-8397281 | Msa0533440:CDS | 25.0% |
| ! | TCCTTACAATAACAAAGAAT+TGG | + | chr4_1:8397369-8397388 | Msa0533440:CDS | 25.0% |
| ! | CCTTACAATAACAAAGAATT+GGG | + | chr4_1:8397370-8397389 | Msa0533440:CDS | 25.0% |
| ! | ATTTAACATATTAGGATCAG+GGG | - | chr4_1:8397500-8397519 | None:intergenic | 25.0% |
| ! | CATTTAACATATTAGGATCA+GGG | - | chr4_1:8397501-8397520 | None:intergenic | 25.0% |
| !! | AGTGAAGCATTTAACATATT+AGG | - | chr4_1:8397508-8397527 | None:intergenic | 25.0% |
| ! | TTTATATATAAGGATCAACG+TGG | - | chr4_1:8397608-8397627 | None:intergenic | 25.0% |
| ! | AATAATTAACCGATGAGTTT+AGG | + | chr4_1:8397725-8397744 | Msa0533440:intron | 25.0% |
| ! | TTTAGAAAACCTAAACTCAT+CGG | - | chr4_1:8397737-8397756 | None:intergenic | 25.0% |
| !! | AACTTTTGTAGAATCGATAT+AGG | + | chr4_1:8398087-8398106 | Msa0533440:intron | 25.0% |
| ! | TAAAATCGCAATCAAAATCA+AGG | + | chr4_1:8398116-8398135 | Msa0533440:intron | 25.0% |
| ! | AAAATCGCAATCAAAATCAA+GGG | + | chr4_1:8398117-8398136 | Msa0533440:intron | 25.0% |
| !!! | ATAGGTCTTATTAAATTTGG+TGG | + | chr4_1:8398397-8398416 | Msa0533440:intron | 25.0% |
| !!! | TAGGTCTTATTAAATTTGGT+GGG | + | chr4_1:8398398-8398417 | Msa0533440:intron | 25.0% |
| !!! | TACAACACTTGTTTTTGTAT+TGG | - | chr4_1:8398441-8398460 | None:intergenic | 25.0% |
| !! | ACAAAAACAAGTGTTGTAAA+TGG | + | chr4_1:8398443-8398462 | Msa0533440:intron | 25.0% |
| !! | TTTAACGAGACCTTTTATAA+AGG | + | chr4_1:8398524-8398543 | Msa0533440:intron | 25.0% |
| !! | TTAACGAGACCTTTTATAAA+GGG | + | chr4_1:8398525-8398544 | Msa0533440:intron | 25.0% |
| ! | TATATTTCGCCCTTTATAAA+AGG | - | chr4_1:8398537-8398556 | None:intergenic | 25.0% |
| ! | TTGTAACATTGTTGTATGTT+AGG | + | chr4_1:8398587-8398606 | Msa0533440:intron | 25.0% |
| ! | TGTAACATTGTTGTATGTTA+GGG | + | chr4_1:8398588-8398607 | Msa0533440:intron | 25.0% |
| ! | CTTCATTTATTTACTACAAG+AGG | + | chr4_1:8398631-8398650 | Msa0533440:intron | 25.0% |
| !!! | TTTTTTTTAAAGAGGTTCAC+CGG | + | chr4_1:8398770-8398789 | Msa0533440:intron | 25.0% |
| ! | TAAAAGTCACGAAAAATGAA+GGG | - | chr4_1:8399048-8399067 | None:intergenic | 25.0% |
| ! | ATAAAAGTCACGAAAAATGA+AGG | - | chr4_1:8399049-8399068 | None:intergenic | 25.0% |
| !! | TTTTAGACCTTTCAGAAAAT+AGG | + | chr4_1:8399522-8399541 | Msa0533440:CDS | 25.0% |
| TTGATGTTAATGGGAAATCA+AGG | + | chr4_1:8397271-8397290 | Msa0533440:CDS | 30.0% | |
| CACTACATCTTGTCAAATAT+AGG | + | chr4_1:8397343-8397362 | Msa0533440:CDS | 30.0% | |
| !! | CCCAATTCTTTGTTATTGTA+AGG | - | chr4_1:8397373-8397392 | None:intergenic | 30.0% |
| ATAACAAAGAATTGGGTTCA+TGG | + | chr4_1:8397377-8397396 | Msa0533440:CDS | 30.0% | |
| TAACAAAGAATTGGGTTCAT+GGG | + | chr4_1:8397378-8397397 | Msa0533440:CDS | 30.0% | |
| CTTATATAGTAAACTCTGGA+TGG | - | chr4_1:8397476-8397495 | None:intergenic | 30.0% | |
| GCATTTAACATATTAGGATC+AGG | - | chr4_1:8397502-8397521 | None:intergenic | 30.0% | |
| ! | TTGTCCTACAACAATTTTCA+AGG | + | chr4_1:8397562-8397581 | Msa0533440:CDS | 30.0% |
| !! | AACAATTTTCAAGGTTGGAT+TGG | + | chr4_1:8397571-8397590 | Msa0533440:CDS | 30.0% |
| AATTAAGAGAGATGTCAGAT+GGG | + | chr4_1:8397801-8397820 | Msa0533440:intron | 30.0% | |
| ATGGGTCTTACTAAATTTAG+TGG | + | chr4_1:8397819-8397838 | Msa0533440:intron | 30.0% | |
| TGGGTCTTACTAAATTTAGT+GGG | + | chr4_1:8397820-8397839 | Msa0533440:intron | 30.0% | |
| !! | CAAGAGAGATATTTTTACTG+AGG | + | chr4_1:8397947-8397966 | Msa0533440:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr4_1:8398052-8398071 | Msa0533440:intron | 30.0% | |
| AAAATCGCAATCAAAATCGA+TGG | + | chr4_1:8398052-8398071 | Msa0533440:intron | 30.0% | |
| ! | AACAAGTGTTGTAAATGGTA+CGG | + | chr4_1:8398448-8398467 | Msa0533440:intron | 30.0% |
| TTCCATAAATGTAACTCAGT+TGG | + | chr4_1:8398564-8398583 | Msa0533440:intron | 30.0% | |
| AACCAACTGAGTTACATTTA+TGG | - | chr4_1:8398569-8398588 | None:intergenic | 30.0% | |
| TTCAAATTCTCCAAATCAAC+CGG | - | chr4_1:8398792-8398811 | None:intergenic | 30.0% | |
| GTTTCCTAGACTTAAAAGAT+TGG | + | chr4_1:8399144-8399163 | Msa0533440:CDS | 30.0% | |
| ! | AGCATTTTGCCAAGTTTAAA+TGG | + | chr4_1:8399202-8399221 | Msa0533440:CDS | 30.0% |
| ! | AACAAAAGCTTTTCATTAGG+AGG | + | chr4_1:8399394-8399413 | Msa0533440:intron | 30.0% |
| ! | AATTCAGCCTATTTTCTGAA+AGG | - | chr4_1:8399532-8399551 | None:intergenic | 30.0% |
| TGCATGTATTCACATCATTA+AGG | + | chr4_1:8399570-8399589 | Msa0533440:CDS | 30.0% | |
| TAGAGAAAGAACAGTTCAAT+TGG | - | chr4_1:8399616-8399635 | None:intergenic | 30.0% | |
| ATGGGAAATCAAGGATGTAA+CGG | + | chr4_1:8397280-8397299 | Msa0533440:CDS | 35.0% | |
| GAGATAGCAATTGTTGTGTT+TGG | + | chr4_1:8397410-8397429 | Msa0533440:CDS | 35.0% | |
| ! | GGGTCTTATATAGTAAACTC+TGG | - | chr4_1:8397480-8397499 | None:intergenic | 35.0% |
| CCAACCTTGAAAATTGTTGT+AGG | - | chr4_1:8397569-8397588 | None:intergenic | 35.0% | |
| !! | CCTACAACAATTTTCAAGGT+TGG | + | chr4_1:8397566-8397585 | Msa0533440:CDS | 35.0% |
| CAATTAAGAGAGATGTCAGA+TGG | + | chr4_1:8397800-8397819 | Msa0533440:intron | 35.0% | |
| GTAAACAAGGTTGTCAATGT+CGG | + | chr4_1:8397985-8398004 | Msa0533440:intron | 35.0% | |
| TAAACAAGGTTGTCAATGTC+GGG | + | chr4_1:8397986-8398005 | Msa0533440:intron | 35.0% | |
| TCCAAAGGGAATAGCAAAAT+TGG | + | chr4_1:8398022-8398041 | Msa0533440:intron | 35.0% | |
| CCAAAGGGAATAGCAAAATT+GGG | + | chr4_1:8398023-8398042 | Msa0533440:intron | 35.0% | |
| ACATTGTTGTATGTTAGGGT+CGG | + | chr4_1:8398592-8398611 | Msa0533440:intron | 35.0% | |
| GACTATCTTAAAGACCGAAT+TGG | - | chr4_1:8398937-8398956 | None:intergenic | 35.0% | |
| AGGGAAAAAAAACAGCGAAT+TGG | - | chr4_1:8399029-8399048 | None:intergenic | 35.0% | |
| !! | GTCTCCAATCTTTTAAGTCT+AGG | - | chr4_1:8399151-8399170 | None:intergenic | 35.0% |
| TTGGAGACATTAGATCTTTC+AGG | + | chr4_1:8399163-8399182 | Msa0533440:CDS | 35.0% | |
| TGGAGACATTAGATCTTTCA+GGG | + | chr4_1:8399164-8399183 | Msa0533440:CDS | 35.0% | |
| GCAGTCAATCCATTTAAACT+TGG | - | chr4_1:8399214-8399233 | None:intergenic | 35.0% | |
| !! | GCTCTAACAACTTTGAAGTT+TGG | + | chr4_1:8399232-8399251 | Msa0533440:CDS | 35.0% |
| !! | GTTTGGTTCTGAATATTCGA+TGG | + | chr4_1:8399249-8399268 | Msa0533440:CDS | 35.0% |
| !! | TCTAGGATTTCTGAGATCTA+AGG | + | chr4_1:8399490-8399509 | Msa0533440:intron | 35.0% |
| !! | ATTTCTGAGATCTAAGGAGT+TGG | + | chr4_1:8399496-8399515 | Msa0533440:CDS | 35.0% |
| AACTGTTCTTTCTCTACTCT+AGG | + | chr4_1:8399620-8399639 | Msa0533440:CDS | 35.0% | |
| ATGTAACGGTTGCTTAGAGA+AGG | + | chr4_1:8397294-8397313 | Msa0533440:CDS | 40.0% | |
| TGCTTAGAGAAGGAGAGAAT+AGG | + | chr4_1:8397304-8397323 | Msa0533440:CDS | 40.0% | |
| GACTTTACTTCTGGTCCAAA+GGG | + | chr4_1:8398008-8398027 | Msa0533440:intron | 40.0% | |
| !!! | CCCAATTTTGCTATTCCCTT+TGG | - | chr4_1:8398026-8398045 | None:intergenic | 40.0% |
| ATGGAAAACTTCTCTGCTCA+AGG | + | chr4_1:8399268-8399287 | Msa0533440:CDS | 40.0% | |
| AAGAGAGTCAAGTGCTCTTC+TGG | + | chr4_1:8397433-8397452 | Msa0533440:CDS | 45.0% | |
| ! | AGAAGGCGTAGCTCTTCAAA+TGG | - | chr4_1:8397538-8397557 | None:intergenic | 45.0% |
| TGTTGTAGGACAAGTCGAGA+AGG | - | chr4_1:8397555-8397574 | None:intergenic | 45.0% | |
| CAATGTCGGGACTTTACTTC+TGG | + | chr4_1:8397999-8398018 | Msa0533440:intron | 45.0% | |
| GGACTTTACTTCTGGTCCAA+AGG | + | chr4_1:8398007-8398026 | Msa0533440:intron | 45.0% | |
| ! | AAGAGGTTCACCGGTTGATT+TGG | + | chr4_1:8398779-8398798 | Msa0533440:intron | 45.0% |
| ! | TCTGAGATCTAAGGAGTTGG+AGG | + | chr4_1:8399499-8399518 | Msa0533440:CDS | 45.0% |
| !!! | TTAAAGAAATTTTATATATA+AGG | - | chr4_1:8397618-8397637 | None:intergenic | 5.0% |
| !! | CAAGGTTGGATTGGCAACGA+AGG | + | chr4_1:8397580-8397599 | Msa0533440:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 8397201 | 8399676 | 8397201 | ID=Msa0533440;Name=Msa0533440 |
| chr4_1 | mRNA | 8397201 | 8399676 | 8397201 | ID=Msa0533440-mRNA-1;Parent=Msa0533440;Name=Msa0533440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=25|1|0.66|1|1|1|3|0|234 |
| chr4_1 | exon | 8397201 | 8397601 | 8397201 | ID=Msa0533440-mRNA-1:exon:2831;Parent=Msa0533440-mRNA-1 |
| chr4_1 | exon | 8399143 | 8399289 | 8399143 | ID=Msa0533440-mRNA-1:exon:2832;Parent=Msa0533440-mRNA-1 |
| chr4_1 | exon | 8399495 | 8399676 | 8399495 | ID=Msa0533440-mRNA-1:exon:2833;Parent=Msa0533440-mRNA-1 |
| chr4_1 | five_prime_UTR | 8397201 | 8397225 | 8397201 | ID=Msa0533440-mRNA-1:five_prime_utr;Parent=Msa0533440-mRNA-1 |
| chr4_1 | CDS | 8397226 | 8397601 | 8397226 | ID=Msa0533440-mRNA-1:cds;Parent=Msa0533440-mRNA-1 |
| chr4_1 | CDS | 8399143 | 8399289 | 8399143 | ID=Msa0533440-mRNA-1:cds;Parent=Msa0533440-mRNA-1 |
| chr4_1 | CDS | 8399495 | 8399676 | 8399495 | ID=Msa0533440-mRNA-1:cds;Parent=Msa0533440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
