AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0752580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752580 MtrunA17_Chr5g0396651 93.233 133 3 1 170 302 16 142 4.02e-82 244
Msa0752580 MtrunA17_Chr5g0423361 61.417 127 49 0 1 127 616 742 4.57e-47 168
Msa0752580 MtrunA17_Chr1g0162501 52.381 126 60 0 2 127 178 303 1.12e-40 143
Msa0752580 MtrunA17_Chr1g0209991 57.500 120 51 0 1 120 356 475 2.93e-40 146
Msa0752580 MtrunA17_Chr7g0228101 36.923 130 82 0 4 133 51 180 3.17e-20 86.3
Msa0752580 MtrunA17_Chr3g0087691 37.857 140 74 3 2 138 420 549 5.66e-19 87.0
Msa0752580 MtrunA17_Chr1g0180641 36.000 125 77 3 5 127 1 124 1.88e-17 77.0
Msa0752580 MtrunA17_Chr4g0050121 34.959 123 80 0 6 128 42 164 1.36e-16 75.9
Msa0752580 MtrunA17_Chr7g0242971 34.559 136 84 2 1 133 129 262 2.61e-16 77.0
Msa0752580 MtrunA17_Chr7g0266351 30.709 127 88 0 1 127 84 210 7.66e-15 72.4
Msa0752580 MtrunA17_Chr8g0388191 37.594 133 61 5 170 302 16 126 9.50e-15 69.7
Msa0752580 MtrunA17_Chr8g0384791 32.609 138 84 4 1 133 286 419 2.51e-13 70.1
Msa0752580 MtrunA17_Chr8g0391961 33.065 124 76 2 1 120 23 143 1.28e-12 64.3
Msa0752580 MtrunA17_Chr7g0231251 31.452 124 84 1 1 124 357 479 5.81e-12 65.9
Msa0752580 MtrunA17_Chr1g0208401 36.000 100 64 0 28 127 3 102 2.56e-11 59.7
Msa0752580 MtrunA17_Chr1g0181271 35.897 78 49 1 48 124 6 83 7.74e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAACATGATGTCATTT+TGG 0.200719 5_2:-6300891 Msa0752580:CDS
AATTATATTGATGAATTATT+AGG 0.223556 5_2:-6300818 Msa0752580:CDS
TCCTAACTGCCTTTCTTGTT+AGG 0.234019 5_2:+6300933 None:intergenic
AGTTGAAGCTATTGGTCTTT+TGG 0.248936 5_2:-6305349 Msa0752580:CDS
AATCCTCTAATTAATGAAAT+TGG 0.263104 5_2:-6305237 Msa0752580:CDS
CAAAACAGACAGCAAGATTC+TGG 0.271559 5_2:-6305280 Msa0752580:CDS
CTACTCCTCTGTCACTGTTT+TGG 0.280845 5_2:-6305373 Msa0752580:CDS
ATTGCCTACCTCATCTTTGT+AGG 0.314350 5_2:+6300973 None:intergenic
CCTAACTGCCTTTCTTGTTA+GGG 0.331209 5_2:+6300934 None:intergenic
TCACCAATTTCATTAATTAG+AGG 0.357450 5_2:+6305234 None:intergenic
GCTAATACAATCATGGGTTA+TGG 0.383237 5_2:-6305450 None:intergenic
ACTATGTAGTGTCGTTTGTT+AGG 0.385184 5_2:-6305170 Msa0752580:CDS
TTCAATTGTATTAGAAGTGT+TGG 0.429545 5_2:-6304696 Msa0752580:CDS
TTCATTAATTAGAGGATTGG+TGG 0.433038 5_2:+6305242 None:intergenic
GTTGGTTCAAGTTGATAGAA+TGG 0.448567 5_2:+6300640 None:intergenic
CCCTAACAAGAAAGGCAGTT+AGG 0.456411 5_2:-6300934 Msa0752580:CDS
TCAAAATTTAAATGCAAAGA+AGG 0.460513 5_2:-6300725 Msa0752580:CDS
AATTTCATTAATTAGAGGAT+TGG 0.461250 5_2:+6305239 None:intergenic
AGAATGGTAACTCGGTCCAT+TGG 0.465675 5_2:+6300656 None:intergenic
CTAACTGCCTTTCTTGTTAG+GGG 0.467001 5_2:+6300935 None:intergenic
ATAAGTGAGTACAAAGTAGT+AGG 0.469291 5_2:+6305069 None:intergenic
TTGCTGAATTCAGTAGACTA+TGG 0.478470 5_2:-6304605 Msa0752580:intron
GAATGGTAACTCGGTCCATT+GGG 0.488126 5_2:+6300657 None:intergenic
TGAGCTTGTGGCACTCCCAA+TGG 0.488217 5_2:-6300672 Msa0752580:CDS
AATTATTAGGAGAAAGAGAA+AGG 0.495743 5_2:-6300805 Msa0752580:CDS
CATATCTCCCCTAACAAGAA+AGG 0.502952 5_2:-6300942 Msa0752580:CDS
ACAAACGACACTACATAGTC+GGG 0.513895 5_2:+6305174 None:intergenic
ATGTAGTGTCGTTTGTTAGG+AGG 0.532381 5_2:-6305167 Msa0752580:CDS
AACAAACGACACTACATAGT+CGG 0.533616 5_2:+6305173 None:intergenic
TCAGAAGCAACATCTTTGAA+TGG 0.548770 5_2:+6300692 None:intergenic
GAATTCAGCAATCCTCTGCC+AGG 0.550570 5_2:+6304617 None:intergenic
GAAAAGGAGGAGTTGATGAA+AGG 0.556432 5_2:-6300860 Msa0752580:CDS
TTTGGAAAAGGATGAAAAGG+AGG 0.556727 5_2:-6300873 Msa0752580:CDS
AGGCAGTTAGGAAAAGTGTT+CGG 0.561991 5_2:-6300922 Msa0752580:CDS
AGATGTTGCTTCTGAGCTTG+TGG 0.567179 5_2:-6300684 Msa0752580:CDS
TGCACAAGAAGTCCTGGCAG+AGG 0.573468 5_2:-6304629 Msa0752580:CDS
GATGAATGTTACTAGAGTGA+AGG 0.581123 5_2:-6300783 Msa0752580:CDS
GGCAATAACCTACAAAGATG+AGG 0.605269 5_2:-6300981 Msa0752580:CDS
AGCAAAATTCAAAGACACAA+AGG 0.611547 5_2:-6301002 Msa0752580:CDS
ATGAAAGGAAGAAGAAGCTG+TGG 0.613856 5_2:-6300845 Msa0752580:CDS
AGTGAAGGTAAAGATGACAA+AGG 0.626326 5_2:-6300768 Msa0752580:CDS
ATAACCTACAAAGATGAGGT+AGG 0.652764 5_2:-6300977 Msa0752580:CDS
AAATTTAAATGCAAAGAAGG+AGG 0.657803 5_2:-6300722 Msa0752580:CDS
ACCAAGTAGAAAATTGTCTG+TGG 0.664367 5_2:+6305410 None:intergenic
AACTTCCAAAACAGTGACAG+AGG 0.665415 5_2:+6305368 None:intergenic
AAGTTGATAGAATGGTAACT+CGG 0.691380 5_2:+6300648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATATTTTTTTAGCAA+AGG + chr5_2:6301065-6301084 None:intergenic 10.0%
!!! TTTTTTTAATTAGTTTTGTA+AGG - chr5_2:6302235-6302254 Msa0752580:intron 10.0%
!! TTTCTTAAATAATTACTATA+TGG - chr5_2:6302492-6302511 Msa0752580:intron 10.0%
!!! TTTATTAGTCTTTAATATTT+TGG + chr5_2:6302916-6302935 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATTA+AGG - chr5_2:6303680-6303699 Msa0752580:intron 10.0%
!!! TTATGATATTGAATAATTTT+TGG + chr5_2:6304323-6304342 None:intergenic 10.0%
!! ATATGTTAAATAATAAGTAT+TGG + chr5_2:6304389-6304408 None:intergenic 10.0%
!! AATTATATTGATGAATTATT+AGG - chr5_2:6305266-6305285 Msa0752580:CDS 10.0%
!!! TGGTATTATTGATTATATTA+TGG - chr5_2:6301499-6301518 Msa0752580:intron 15.0%
!!! GGTATTATTGATTATATTAT+GGG - chr5_2:6301500-6301519 Msa0752580:intron 15.0%
!!! GATTTAAATTTTTTACTTTG+AGG + chr5_2:6301570-6301589 None:intergenic 15.0%
!! TTTAATTGAATATGGAATTT+AGG + chr5_2:6301763-6301782 None:intergenic 15.0%
!! TTTGTGAATTTAATTGAATA+TGG + chr5_2:6301771-6301790 None:intergenic 15.0%
!!! AAGTTAACTTTAAAGAATTA+TGG - chr5_2:6302011-6302030 Msa0752580:intron 15.0%
!!! CATTTGTAAATTTGTTTATA+TGG + chr5_2:6302045-6302064 None:intergenic 15.0%
!! TGTTAAACTTAAAAAAATTG+TGG + chr5_2:6302146-6302165 None:intergenic 15.0%
!! TAATAAAAGTCAATGTATAA+GGG - chr5_2:6302929-6302948 Msa0752580:intron 15.0%
!! AAAAATGCAAGAAATTAAAA+AGG + chr5_2:6303243-6303262 None:intergenic 15.0%
!!! AATATTTTGATATTCTAACT+AGG - chr5_2:6304047-6304066 Msa0752580:intron 15.0%
!! AATTTCATTAATTAGAGGAT+TGG + chr5_2:6300848-6300867 None:intergenic 20.0%
!! AATCCTCTAATTAATGAAAT+TGG - chr5_2:6300847-6300866 Msa0752580:CDS 20.0%
!!! TTCTTTAAAGCTTTCTTTTT+TGG - chr5_2:6301304-6301323 Msa0752580:intron 20.0%
!!! TTCTTTAAAGCTTTCTTTTT+TGG - chr5_2:6301304-6301323 Msa0752580:intron 20.0%
!!! TTATTGATTATATTATGGGT+TGG - chr5_2:6301504-6301523 Msa0752580:intron 20.0%
!!! TATTGATTATATTATGGGTT+GGG - chr5_2:6301505-6301524 Msa0752580:intron 20.0%
!! AATTTAAATCACCTCAAAAA+CGG - chr5_2:6301580-6301599 Msa0752580:intron 20.0%
!! AATATGGAATTTAGGTAAAA+AGG + chr5_2:6301755-6301774 None:intergenic 20.0%
!!! AAATGAAATAAAGATTAGTC+CGG - chr5_2:6302060-6302079 Msa0752580:intron 20.0%
!! AACTTGTAAATTTACTTATG+TGG - chr5_2:6302090-6302109 Msa0752580:intron 20.0%
!!! TTTTAATTAGTTTTGTAAGG+AGG - chr5_2:6302238-6302257 Msa0752580:intron 20.0%
!! CTATAATTAATTCATAGTAC+TGG - chr5_2:6302399-6302418 Msa0752580:intron 20.0%
!!! TATGGTTTATTTACTTGTTA+CGG - chr5_2:6302510-6302529 Msa0752580:intron 20.0%
!! TTAGATCTAATTATAATGTG+TGG - chr5_2:6302842-6302861 Msa0752580:intron 20.0%
!! CTAATAAAAGTCAATGTATA+AGG - chr5_2:6302928-6302947 Msa0752580:intron 20.0%
!! AATAAAAGTCAATGTATAAG+GGG - chr5_2:6302930-6302949 Msa0752580:intron 20.0%
!! AAATTAAGGAGAGATAAAAA+TGG - chr5_2:6303694-6303713 Msa0752580:intron 20.0%
!!! TGAAATGAGTCAATTATTTT+AGG - chr5_2:6303855-6303874 Msa0752580:intron 20.0%
!! TTACAAAAGACTCAAAATTA+TGG - chr5_2:6303889-6303908 Msa0752580:intron 20.0%
!! TACAAAAGACTCAAAATTAT+GGG - chr5_2:6303890-6303909 Msa0752580:intron 20.0%
!! TAAGCATCAATTTACTATAT+TGG + chr5_2:6304025-6304044 None:intergenic 20.0%
!!! TTGATTTGTAAAACCATTTT+TGG - chr5_2:6304167-6304186 Msa0752580:intron 20.0%
!!! TGATTTGTAAAACCATTTTT+GGG - chr5_2:6304168-6304187 Msa0752580:intron 20.0%
!!! TATCTTTTAAGTAAAAGTCT+GGG + chr5_2:6304548-6304567 None:intergenic 20.0%
!!! TTATCTTTTAAGTAAAAGTC+TGG + chr5_2:6304549-6304568 None:intergenic 20.0%
!! AGTTGATTGTATATGATATA+AGG + chr5_2:6304899-6304918 None:intergenic 20.0%
!! TCAAAATTTAAATGCAAAGA+AGG - chr5_2:6305359-6305378 Msa0752580:CDS 20.0%
! TCACCAATTTCATTAATTAG+AGG + chr5_2:6300853-6300872 None:intergenic 25.0%
!!! TCCAAAACATTTTTTTAGTC+GGG + chr5_2:6301164-6301183 None:intergenic 25.0%
!!! CTCCAAAACATTTTTTTAGT+CGG + chr5_2:6301165-6301184 None:intergenic 25.0%
!!! TATTTTTATCCACTTGCAAA+AGG + chr5_2:6301275-6301294 None:intergenic 25.0%
!! TTCAATTGTATTAGAAGTGT+TGG - chr5_2:6301388-6301407 Msa0752580:intron 25.0%
! AAATAAAACATGGTTAGGAA+TGG + chr5_2:6301538-6301557 None:intergenic 25.0%
! AAGACAAATAAAACATGGTT+AGG + chr5_2:6301543-6301562 None:intergenic 25.0%
! GTTACAAGACAAATAAAACA+TGG + chr5_2:6301548-6301567 None:intergenic 25.0%
!!! GTTTTCTATTTCTTTGTTCA+TGG + chr5_2:6301733-6301752 None:intergenic 25.0%
!!! ATTCAGTAGCTTTAGATAAT+TGG - chr5_2:6301797-6301816 Msa0752580:intron 25.0%
!!! TTCAGTAGCTTTAGATAATT+GGG - chr5_2:6301798-6301817 Msa0752580:intron 25.0%
! ATAAACATGTAAAGTGTAGA+GGG - chr5_2:6301980-6301999 Msa0752580:intron 25.0%
!! AATGAAATAAAGATTAGTCC+GGG - chr5_2:6302061-6302080 Msa0752580:intron 25.0%
!!! AAAATGACTCTCTTTTTTAG+AGG + chr5_2:6302198-6302217 None:intergenic 25.0%
!!! TTGTTTTTGTTGTGAAAGTA+TGG + chr5_2:6302265-6302284 None:intergenic 25.0%
! CTTTCACAACAAAAACAAAA+AGG - chr5_2:6302267-6302286 Msa0752580:intron 25.0%
! TATCTTCTTGAAATTCTAGA+AGG + chr5_2:6302470-6302489 None:intergenic 25.0%
! TAATAATCATCCAATTGTGA+GGG + chr5_2:6303032-6303051 None:intergenic 25.0%
! TTAATAATCATCCAATTGTG+AGG + chr5_2:6303033-6303052 None:intergenic 25.0%
! CACAATTGGATGATTATTAA+AGG - chr5_2:6303033-6303052 Msa0752580:intron 25.0%
! ATGAAAAATGTTAGAACTGA+TGG + chr5_2:6303131-6303150 None:intergenic 25.0%
!! TCTAACATTTTTCATCTCTT+AGG - chr5_2:6303136-6303155 Msa0752580:intron 25.0%
! AAATTAAAAAGGAAGGTTTG+AGG + chr5_2:6303232-6303251 None:intergenic 25.0%
! ATGCAAGAAATTAAAAAGGA+AGG + chr5_2:6303239-6303258 None:intergenic 25.0%
! CAAACAAGTTCATTCAATTA+GGG + chr5_2:6303424-6303443 None:intergenic 25.0%
! TCAAACAAGTTCATTCAATT+AGG + chr5_2:6303425-6303444 None:intergenic 25.0%
! GTAAATGACTCACTTAATAA+GGG + chr5_2:6303645-6303664 None:intergenic 25.0%
! AGTAAATGACTCACTTAATA+AGG + chr5_2:6303646-6303665 None:intergenic 25.0%
!! GCAAATTAAGTTGTTTATTC+TGG - chr5_2:6303952-6303971 Msa0752580:intron 25.0%
!! TTTTCAGTTTGTAGACTTTA+TGG - chr5_2:6304085-6304104 Msa0752580:intron 25.0%
! TTTCAGTTTGTAGACTTTAT+GGG - chr5_2:6304086-6304105 Msa0752580:intron 25.0%
! TGAGAAAAAAAGTTATGCTA+TGG + chr5_2:6304243-6304262 None:intergenic 25.0%
!! TTATGGACAAAAGACTATTT+TGG + chr5_2:6304286-6304305 None:intergenic 25.0%
!! AGTCTTTTGTCCATAAAAAA+TGG - chr5_2:6304290-6304309 Msa0752580:intron 25.0%
!!! TGGTCTTATACCATTTTTTA+TGG + chr5_2:6304303-6304322 None:intergenic 25.0%
!!! TTTTGCATCTAAGATATGAT+CGG + chr5_2:6304514-6304533 None:intergenic 25.0%
!!! ATCTTTTAAGTAAAAGTCTG+GGG + chr5_2:6304547-6304566 None:intergenic 25.0%
! TTTGTCTACTTATAGATTCA+TGG + chr5_2:6304657-6304676 None:intergenic 25.0%
! TATTGAGCAGAAAATAATTC+AGG - chr5_2:6304815-6304834 Msa0752580:intron 25.0%
!!! TGGTATTATTTTGGAAAGAT+TGG + chr5_2:6304995-6305014 None:intergenic 25.0%
!! TACTGATCATGGTATTATTT+TGG + chr5_2:6305004-6305023 None:intergenic 25.0%
! CTTGTCTTGAATTTCTTAAT+AGG - chr5_2:6305036-6305055 Msa0752580:intron 25.0%
! AATTATTAGGAGAAAGAGAA+AGG - chr5_2:6305279-6305298 Msa0752580:CDS 25.0%
! AAATTTAAATGCAAAGAAGG+AGG - chr5_2:6305362-6305381 Msa0752580:CDS 25.0%
!!! TCTTTTGGAGTCAATCAAAA+TGG - chr5_2:6300750-6300769 Msa0752580:CDS 30.0%
TTCATTAATTAGAGGATTGG+TGG + chr5_2:6300845-6300864 None:intergenic 30.0%
ATAAGTGAGTACAAAGTAGT+AGG + chr5_2:6301018-6301037 None:intergenic 30.0%
! TCCCGACTAAAAAAATGTTT+TGG - chr5_2:6301160-6301179 Msa0752580:intron 30.0%
!! CGACTAAAAAAATGTTTTGG+AGG - chr5_2:6301163-6301182 Msa0752580:intron 30.0%
!!! AAAATGTTTTGGAGGCAATT+TGG - chr5_2:6301171-6301190 Msa0752580:intron 30.0%
! CTTTGAAGATAGACATAGAA+AGG - chr5_2:6301194-6301213 Msa0752580:intron 30.0%
TTGTGCAGAAAAAAACAGAA+GGG + chr5_2:6301442-6301461 None:intergenic 30.0%
!! ATCATTTACAACCGTTTTTG+AGG + chr5_2:6301594-6301613 None:intergenic 30.0%
TTTCTTGAAGACTAAAAGGT+GGG + chr5_2:6301904-6301923 None:intergenic 30.0%
! TTTTCTTGAAGACTAAAAGG+TGG + chr5_2:6301905-6301924 None:intergenic 30.0%
!! ACCTTTTAGTCTTCAAGAAA+AGG - chr5_2:6301904-6301923 Msa0752580:intron 30.0%
! TCCTTTTCTTGAAGACTAAA+AGG + chr5_2:6301908-6301927 None:intergenic 30.0%
CATAAACATGTAAAGTGTAG+AGG - chr5_2:6301979-6301998 Msa0752580:intron 30.0%
! ATGAAATAAAGATTAGTCCG+GGG - chr5_2:6302062-6302081 Msa0752580:intron 30.0%
!! AATTTACAAGTTGATATCCC+CGG + chr5_2:6302082-6302101 None:intergenic 30.0%
!!! CTTATGTGGCTATTTTTTGT+TGG - chr5_2:6302104-6302123 Msa0752580:intron 30.0%
!! AAAAAGACTGTTCTAAGGTA+AGG + chr5_2:6302173-6302192 None:intergenic 30.0%
GCATAACATGTCACTAAAAA+TGG + chr5_2:6302344-6302363 None:intergenic 30.0%
ATATTTCATCTGCAGGTTAA+TGG + chr5_2:6302958-6302977 None:intergenic 30.0%
!! TTTTAATTCACCCTCACAAT+TGG - chr5_2:6303019-6303038 Msa0752580:intron 30.0%
!! TGTCTTTTCATTTTTGACAG+AGG - chr5_2:6303200-6303219 Msa0752580:intron 30.0%
GGAATATATTGAATTGAGAG+TGG - chr5_2:6303772-6303791 Msa0752580:intron 30.0%
AAAGACTCAAAATTATGGGA+CGG - chr5_2:6303894-6303913 Msa0752580:intron 30.0%
!! TGCGTTTGATTTGTTAAAGA+AGG - chr5_2:6304109-6304128 Msa0752580:intron 30.0%
!! TTGACTTTGAGACACAATAT+TGG + chr5_2:6304451-6304470 None:intergenic 30.0%
! TTTTCTTGTAGTAGGACAAT+GGG - chr5_2:6304688-6304707 Msa0752580:CDS 30.0%
! CTATTGATGGTTACATTACA+TGG + chr5_2:6304722-6304741 None:intergenic 30.0%
GCTTAAAGCTTGACTAATAT+TGG - chr5_2:6304741-6304760 Msa0752580:intron 30.0%
TTCAAGACAAGCAAACAATA+CGG + chr5_2:6305027-6305046 None:intergenic 30.0%
AGCAAAATTCAAAGACACAA+AGG - chr5_2:6305082-6305101 Msa0752580:CDS 30.0%
!! TTCAGAACATGATGTCATTT+TGG - chr5_2:6305193-6305212 Msa0752580:CDS 30.0%
!!! ACATGATGTCATTTTGGAAA+AGG - chr5_2:6305199-6305218 Msa0752580:CDS 30.0%
!! CATTTTGGAAAAGGATGAAA+AGG - chr5_2:6305208-6305227 Msa0752580:CDS 30.0%
!! AAGTTGATAGAATGGTAACT+CGG + chr5_2:6305439-6305458 None:intergenic 30.0%
! TCCACAGACAATTTTCTACT+TGG - chr5_2:6300673-6300692 Msa0752580:CDS 35.0%
ACCAAGTAGAAAATTGTCTG+TGG + chr5_2:6300677-6300696 None:intergenic 35.0%
!!! GTTTTGGAAGTTGAAGCTAT+TGG - chr5_2:6300727-6300746 Msa0752580:CDS 35.0%
!!! AGTTGAAGCTATTGGTCTTT+TGG - chr5_2:6300735-6300754 Msa0752580:CDS 35.0%
!! TGTCTGTTTTGAACATGACA+TGG + chr5_2:6300795-6300814 None:intergenic 35.0%
AACAAACGACACTACATAGT+CGG + chr5_2:6300914-6300933 None:intergenic 35.0%
!! ACTATGTAGTGTCGTTTGTT+AGG - chr5_2:6300914-6300933 Msa0752580:CDS 35.0%
AGGTACTTCACGAAAAACAT+GGG + chr5_2:6300998-6301017 None:intergenic 35.0%
TAGGTACTTCACGAAAAACA+TGG + chr5_2:6300999-6301018 None:intergenic 35.0%
! TTGATTCTACCTTTTGCAAG+TGG - chr5_2:6301263-6301282 Msa0752580:intron 35.0%
TGTGCAGAAAAAAACAGAAG+GGG + chr5_2:6301441-6301460 None:intergenic 35.0%
CTTGTGCAGAAAAAAACAGA+AGG + chr5_2:6301443-6301462 None:intergenic 35.0%
TTGCTGAATTCAGTAGACTA+TGG - chr5_2:6301479-6301498 Msa0752580:intron 35.0%
CTTTCTTATCCAAGATCCAT+AGG - chr5_2:6301822-6301841 Msa0752580:intron 35.0%
TTATCCAAGATCCATAGGAT+TGG - chr5_2:6301827-6301846 Msa0752580:intron 35.0%
ATTATGCAACACCAATCCTA+TGG + chr5_2:6301841-6301860 None:intergenic 35.0%
!!! GGCTATTTTTTGTTGGTTGT+TGG - chr5_2:6302111-6302130 Msa0752580:intron 35.0%
AGGACAAAAAGACTGTTCTA+AGG + chr5_2:6302178-6302197 None:intergenic 35.0%
! TGAATGTGTTTGTCCTTTTG+TGG - chr5_2:6302297-6302316 Msa0752580:intron 35.0%
! TACAACTTGATAGCCACAAA+AGG + chr5_2:6302313-6302332 None:intergenic 35.0%
ATGTATTTGATCGTAAGTCC+CGG + chr5_2:6302557-6302576 None:intergenic 35.0%
GTGTTATGTTGTGTTAGTGT+CGG + chr5_2:6302589-6302608 None:intergenic 35.0%
TGCAATTAAGTCTAGTGTGA+TGG + chr5_2:6302683-6302702 None:intergenic 35.0%
TCACACTAGACTTAATTGCA+TGG - chr5_2:6302683-6302702 Msa0752580:intron 35.0%
!! GGCGAATGAATTAAGTTGAA+CGG - chr5_2:6302704-6302723 Msa0752580:intron 35.0%
!! GCGAATGAATTAAGTTGAAC+GGG - chr5_2:6302705-6302724 Msa0752580:intron 35.0%
ACTCCATATAGTTATCGTGA+AGG + chr5_2:6302732-6302751 None:intergenic 35.0%
GAGTATTAAGTTAACGCAAG+TGG - chr5_2:6302748-6302767 Msa0752580:intron 35.0%
AACACAGTGTAAGATTTACG+TGG - chr5_2:6302798-6302817 Msa0752580:intron 35.0%
! TAATGTGTGGTTAGCTCTTA+CGG - chr5_2:6302855-6302874 Msa0752580:intron 35.0%
GTCAATTCAATCTCTTCCTT+AGG - chr5_2:6302882-6302901 Msa0752580:intron 35.0%
AATCTCTTCCTTAGGATTAC+TGG - chr5_2:6302890-6302909 Msa0752580:intron 35.0%
!!! TATTTTGGCCAGTAATCCTA+AGG + chr5_2:6302901-6302920 None:intergenic 35.0%
AAATCAATGCCGTACATAGA+GGG + chr5_2:6303068-6303087 None:intergenic 35.0%
!!! ATTTTGGTGCCCATAAAAAG+TGG - chr5_2:6303382-6303401 Msa0752580:intron 35.0%
CAAGTTCATTCAATTAGGGT+GGG + chr5_2:6303420-6303439 None:intergenic 35.0%
ACAAGTTCATTCAATTAGGG+TGG + chr5_2:6303421-6303440 None:intergenic 35.0%
CCACTTTGCATTTATGATAG+TGG + chr5_2:6303754-6303773 None:intergenic 35.0%
CCACTATCATAAATGCAAAG+TGG - chr5_2:6303751-6303770 Msa0752580:intron 35.0%
ACGTTGACATGTGAGATAAA+TGG + chr5_2:6303986-6304005 None:intergenic 35.0%
!!! TGTAAAACCATTTTTGGGAC+AGG - chr5_2:6304173-6304192 Msa0752580:intron 35.0%
GTTATGCTATGGTTTAGTGA+AGG + chr5_2:6304232-6304251 None:intergenic 35.0%
TGTGAAACCAATTGCAAACA+GGG + chr5_2:6304420-6304439 None:intergenic 35.0%
TTGTGAAACCAATTGCAAAC+AGG + chr5_2:6304421-6304440 None:intergenic 35.0%
! GACTCAAGTTTTCTTGTAGT+AGG - chr5_2:6304680-6304699 Msa0752580:CDS 35.0%
! GTTTTCTTGTAGTAGGACAA+TGG - chr5_2:6304687-6304706 Msa0752580:CDS 35.0%
TTTCTTGTAGTAGGACAATG+GGG - chr5_2:6304689-6304708 Msa0752580:CDS 35.0%
!! GTCAAGCTTTAAGCTATTGA+TGG + chr5_2:6304735-6304754 None:intergenic 35.0%
GCATATGATCGATATGTCTA+GGG + chr5_2:6304872-6304891 None:intergenic 35.0%
AGCATATGATCGATATGTCT+AGG + chr5_2:6304873-6304892 None:intergenic 35.0%
AAGAAGGGTGAGGAAAAATA+TGG + chr5_2:6304945-6304964 None:intergenic 35.0%
GGTACTAGAAGAAAAGAAGT+GGG + chr5_2:6304974-6304993 None:intergenic 35.0%
TGGTACTAGAAGAAAAGAAG+TGG + chr5_2:6304975-6304994 None:intergenic 35.0%
!! AAACAATACGGTACTGATCA+TGG + chr5_2:6305015-6305034 None:intergenic 35.0%
ATAACCTACAAAGATGAGGT+AGG - chr5_2:6305107-6305126 Msa0752580:CDS 35.0%
TTTGGAAAAGGATGAAAAGG+AGG - chr5_2:6305211-6305230 Msa0752580:CDS 35.0%
GATGAATGTTACTAGAGTGA+AGG - chr5_2:6305301-6305320 Msa0752580:CDS 35.0%
AGTGAAGGTAAAGATGACAA+AGG - chr5_2:6305316-6305335 Msa0752580:CDS 35.0%
TCAGAAGCAACATCTTTGAA+TGG + chr5_2:6305395-6305414 None:intergenic 35.0%
AACTTCCAAAACAGTGACAG+AGG + chr5_2:6300719-6300738 None:intergenic 40.0%
CAAAACAGACAGCAAGATTC+TGG - chr5_2:6300804-6300823 Msa0752580:CDS 40.0%
ACAAACGACACTACATAGTC+GGG + chr5_2:6300913-6300932 None:intergenic 40.0%
!! ATGTAGTGTCGTTTGTTAGG+AGG - chr5_2:6300917-6300936 Msa0752580:CDS 40.0%
GTACTTCACGAAAAACATGG+GGG + chr5_2:6300996-6301015 None:intergenic 40.0%
GGTACTTCACGAAAAACATG+GGG + chr5_2:6300997-6301016 None:intergenic 40.0%
AAAAACAGAAGGGGAGACAA+GGG + chr5_2:6301432-6301451 None:intergenic 40.0%
AAAAAACAGAAGGGGAGACA+AGG + chr5_2:6301433-6301452 None:intergenic 40.0%
! TTTTTCTGCACAAGAAGTCC+TGG - chr5_2:6301449-6301468 Msa0752580:intron 40.0%
AACACCAATCCTATGGATCT+TGG + chr5_2:6301834-6301853 None:intergenic 40.0%
TACTGGTATTCTAGTCGTCT+TGG - chr5_2:6302416-6302435 Msa0752580:intron 40.0%
ACTGGTATTCTAGTCGTCTT+GGG - chr5_2:6302417-6302436 Msa0752580:intron 40.0%
!! ATTAGTATCGACACGAATGC+CGG - chr5_2:6302535-6302554 Msa0752580:intron 40.0%
GGTCCTTCACGATAACTATA+TGG - chr5_2:6302726-6302745 Msa0752580:intron 40.0%
GTAAGATTTACGTGGAATGC+AGG - chr5_2:6302806-6302825 Msa0752580:intron 40.0%
AGGGTCAATATTTCATCTGC+AGG + chr5_2:6302965-6302984 None:intergenic 40.0%
CTCTAACTACCCTCTATGTA+CGG - chr5_2:6303056-6303075 Msa0752580:intron 40.0%
CAAATCAATGCCGTACATAG+AGG + chr5_2:6303069-6303088 None:intergenic 40.0%
!!! CCTAGGACACCACTTTTTAT+GGG + chr5_2:6303394-6303413 None:intergenic 40.0%
!!! ACCTAGGACACCACTTTTTA+TGG + chr5_2:6303395-6303414 None:intergenic 40.0%
CTCACTTAATAAGGGACTGA+GGG + chr5_2:6303637-6303656 None:intergenic 40.0%
ACTCACTTAATAAGGGACTG+AGG + chr5_2:6303638-6303657 None:intergenic 40.0%
!!! GCGCTTTTGTTAAGTATCGA+TGG - chr5_2:6303723-6303742 Msa0752580:intron 40.0%
ACTCAAAATTATGGGACGGA+GGG - chr5_2:6303898-6303917 Msa0752580:intron 40.0%
GATTTGTCCTGTCCCAAAAA+TGG + chr5_2:6304183-6304202 None:intergenic 40.0%
AAACACACCCTGTTTGCAAT+TGG - chr5_2:6304410-6304429 Msa0752580:intron 40.0%
TTCTTGTAGTAGGACAATGG+GGG - chr5_2:6304690-6304709 Msa0752580:CDS 40.0%
! TTTTCTCTTCCTTGACGCAT+AGG - chr5_2:6304780-6304799 Msa0752580:intron 40.0%
ATTAAGTGACCTATGCGTCA+AGG + chr5_2:6304792-6304811 None:intergenic 40.0%
TATGATCGATATGTCTAGGG+TGG + chr5_2:6304869-6304888 None:intergenic 40.0%
AGAAGTGGGAAGGAAAAGAA+GGG + chr5_2:6304960-6304979 None:intergenic 40.0%
AAGAAGTGGGAAGGAAAAGA+AGG + chr5_2:6304961-6304980 None:intergenic 40.0%
CTAGAAGAAAAGAAGTGGGA+AGG + chr5_2:6304970-6304989 None:intergenic 40.0%
GGCAATAACCTACAAAGATG+AGG - chr5_2:6305103-6305122 Msa0752580:CDS 40.0%
ATTGCCTACCTCATCTTTGT+AGG + chr5_2:6305114-6305133 None:intergenic 40.0%
CATATCTCCCCTAACAAGAA+AGG - chr5_2:6305142-6305161 Msa0752580:CDS 40.0%
CTAACTGCCTTTCTTGTTAG+GGG + chr5_2:6305152-6305171 None:intergenic 40.0%
CCTAACTGCCTTTCTTGTTA+GGG + chr5_2:6305153-6305172 None:intergenic 40.0%
TCCTAACTGCCTTTCTTGTT+AGG + chr5_2:6305154-6305173 None:intergenic 40.0%
!! AGGCAGTTAGGAAAAGTGTT+CGG - chr5_2:6305162-6305181 Msa0752580:CDS 40.0%
!! GAAAAGGAGGAGTTGATGAA+AGG - chr5_2:6305224-6305243 Msa0752580:CDS 40.0%
ATGAAAGGAAGAAGAAGCTG+TGG - chr5_2:6305239-6305258 Msa0752580:CDS 40.0%
! CTACTCCTCTGTCACTGTTT+TGG - chr5_2:6300711-6300730 Msa0752580:CDS 45.0%
!! TTAGTATCGACACGAATGCC+GGG - chr5_2:6302536-6302555 Msa0752580:intron 45.0%
! GTGATGGCATAGCTACTTTG+AGG + chr5_2:6302667-6302686 None:intergenic 45.0%
TACGTGGAATGCAGGATTAC+TGG - chr5_2:6302814-6302833 Msa0752580:intron 45.0%
TCTCACTTGTGGGGTTGAAA+GGG + chr5_2:6302984-6303003 None:intergenic 45.0%
ATCTCACTTGTGGGGTTGAA+AGG + chr5_2:6302985-6303004 None:intergenic 45.0%
TTGCCATCGATCTCACTTGT+GGG + chr5_2:6302994-6303013 None:intergenic 45.0%
TTTGCCATCGATCTCACTTG+TGG + chr5_2:6302995-6303014 None:intergenic 45.0%
CCCATAAAAAGTGGTGTCCT+AGG - chr5_2:6303391-6303410 Msa0752580:intron 45.0%
GACTCAAAATTATGGGACGG+AGG - chr5_2:6303897-6303916 Msa0752580:intron 45.0%
! TTTGGGACAGGACAAATCAG+AGG - chr5_2:6304185-6304204 Msa0752580:intron 45.0%
TCTTGTAGTAGGACAATGGG+GGG - chr5_2:6304691-6304710 Msa0752580:CDS 45.0%
CCCTAACAAGAAAGGCAGTT+AGG - chr5_2:6305150-6305169 Msa0752580:CDS 45.0%
! AGATGTTGCTTCTGAGCTTG+TGG - chr5_2:6305400-6305419 Msa0752580:CDS 45.0%
GAATGGTAACTCGGTCCATT+GGG + chr5_2:6305430-6305449 None:intergenic 45.0%
AGAATGGTAACTCGGTCCAT+TGG + chr5_2:6305431-6305450 None:intergenic 45.0%
!! AAAAGATTTATTTATAATTA+AGG - chr5_2:6303268-6303287 Msa0752580:intron 5.0%
!!! ATAATTAAAAATCATAATTT+TGG - chr5_2:6303366-6303385 Msa0752580:intron 5.0%
CACGAAAAACATGGGGGCTA+GGG + chr5_2:6300990-6301009 None:intergenic 50.0%
TCACGAAAAACATGGGGGCT+AGG + chr5_2:6300991-6301010 None:intergenic 50.0%
GAATTCAGCAATCCTCTGCC+AGG + chr5_2:6301470-6301489 None:intergenic 50.0%
ACTGTCTGTCTAGTCAAGCG+AGG + chr5_2:6301879-6301898 None:intergenic 50.0%
AACCCCACAAGTGAGATCGA+TGG - chr5_2:6302988-6303007 Msa0752580:intron 50.0%
TGCCATCGATCTCACTTGTG+GGG + chr5_2:6302993-6303012 None:intergenic 50.0%
! ATCGATATGTCTAGGGTGGC+GGG + chr5_2:6304865-6304884 None:intergenic 50.0%
! GATCGATATGTCTAGGGTGG+CGG + chr5_2:6304866-6304885 None:intergenic 50.0%
TGGGAAGGAAAAGAAGGGTG+AGG + chr5_2:6304955-6304974 None:intergenic 50.0%
TGCACAAGAAGTCCTGGCAG+AGG - chr5_2:6301455-6301474 Msa0752580:intron 55.0%
TCAATTAGGGTGGGCGACCT+AGG + chr5_2:6303411-6303430 None:intergenic 55.0%
TGTAGTAGGACAATGGGGGG+AGG - chr5_2:6304694-6304713 Msa0752580:CDS 55.0%
GTAGTAGGACAATGGGGGGA+GGG - chr5_2:6304695-6304714 Msa0752580:CDS 55.0%
! TCGATATGTCTAGGGTGGCG+GGG + chr5_2:6304864-6304883 None:intergenic 55.0%
TGAGCTTGTGGCACTCCCAA+TGG - chr5_2:6305412-6305431 Msa0752580:CDS 55.0%
TGGCGGGGCACAAAGGGTCA+TGG + chr5_2:6304849-6304868 None:intergenic 65.0%
!! CTAGGGTGGCGGGGCACAAA+GGG + chr5_2:6304855-6304874 None:intergenic 65.0%
!! TCTAGGGTGGCGGGGCACAA+AGG + chr5_2:6304856-6304875 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 6300646 6305460 6300646 ID=Msa0752580;Name=Msa0752580
chr5_2 mRNA 6300646 6305460 6300646 ID=Msa0752580-mRNA-1;Parent=Msa0752580;Name=Msa0752580-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0|0|0|0.33|1|1|3|0|302
chr5_2 exon 6305081 6305460 6305081 ID=Msa0752580-mRNA-1:exon:2703;Parent=Msa0752580-mRNA-1
chr5_2 exon 6304606 6304731 6304606 ID=Msa0752580-mRNA-1:exon:2702;Parent=Msa0752580-mRNA-1
chr5_2 exon 6300646 6301048 6300646 ID=Msa0752580-mRNA-1:exon:2701;Parent=Msa0752580-mRNA-1
chr5_2 CDS 6305081 6305460 6305081 ID=Msa0752580-mRNA-1:cds;Parent=Msa0752580-mRNA-1
chr5_2 CDS 6304606 6304731 6304606 ID=Msa0752580-mRNA-1:cds;Parent=Msa0752580-mRNA-1
chr5_2 CDS 6300646 6301048 6300646 ID=Msa0752580-mRNA-1:cds;Parent=Msa0752580-mRNA-1
Gene Sequence

>Msa0752580

ATGGGTTATGGAATTTGTTTCAGAAACTCCACAGACAATTTTCTACTTGGTAAGTCAGATCTCAACTACTCCTCTGTCACTGTTTTGGAAGTTGAAGCTATTGGTCTTTTGGAGTCAATCAAAATGGCAATCTCAAAAGCTTTTCACCATGTCATGTTCAAAACAGACAGCAAGATTCTGGTTGACTTACTAAAATCCACCAATCCTCTAATTAATGAAATTGGTGATTTAGTTTATGAATGTAAAACTTTGTTGCTCAGTAATCCCGACTATGTAGTGTCGTTTGTTAGGAGGCAAACAAATAAAGTAGCTCACAGCATCGCTAGAGCTGCTTTATCTCACCCTAGCCCCCATGTTTTTCGTGAAGTACCTACTACTTTAGCTATTGAGTACTTCAATTGTATTAGAAGTGTTGGAAGTGTGAGACAAGAAATCCCTTGTCTCCCCTTCTGTTTTTTTCTGCACAAGAAGTCCTGGCAGAGGATTGCTGAATTCAGTAGACTATGGAAAATATCATATGAAAAATTAGCAGCAAAATTCAAAGACACAAAGGCAATAACCTACAAAGATGAGGTAGGCAATAAAAAGATCATATCTCCCCTAACAAGAAAGGCAGTTAGGAAAAGTGTTCGGTTCGCAGATTCAGAACATGATGTCATTTTGGAAAAGGATGAAAAGGAGGAGTTGATGAAAGGAAGAAGAAGCTGTGGTAGTAATTATATTGATGAATTATTAGGAGAAAGAGAAAGGATGAATGTTACTAGAGTGAAGGTAAAGATGACAAAGGAAGAAGCAGCTAAGTTACTGTCAAAATTTAAATGCAAAGAAGGAGGAGTTCTTCCATTCAAAGATGTTGCTTCTGAGCTTGTGGCACTCCCAATGGACCGAGTTACCATTCTATCAACTTGA

Protein sequence

>Msa0752580

MGYGICFRNSTDNFLLGKSDLNYSSVTVLEVEAIGLLESIKMAISKAFHHVMFKTDSKILVDLLKSTNPLINEIGDLVYECKTLLLSNPDYVVSFVRRQTNKVAHSIARAALSHPSPHVFREVPTTLAIEYFNCIRSVGSVRQEIPCLPFCFFLHKKSWQRIAEFSRLWKISYEKLAAKFKDTKAITYKDEVGNKKIISPLTRKAVRKSVRFADSEHDVILEKDEKEELMKGRRSCGSNYIDELLGERERMNVTRVKVKMTKEEAAKLLSKFKCKEGGVLPFKDVASELVALPMDRVTILST*