AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754500 MtrunA17_Chr5g0396651 93.233 133 3 1 170 302 16 142 4.02e-82 244
Msa0754500 MtrunA17_Chr5g0423361 61.417 127 49 0 1 127 616 742 4.57e-47 168
Msa0754500 MtrunA17_Chr1g0162501 52.381 126 60 0 2 127 178 303 1.12e-40 143
Msa0754500 MtrunA17_Chr1g0209991 57.500 120 51 0 1 120 356 475 2.93e-40 146
Msa0754500 MtrunA17_Chr7g0228101 36.923 130 82 0 4 133 51 180 3.17e-20 86.3
Msa0754500 MtrunA17_Chr3g0087691 37.857 140 74 3 2 138 420 549 5.66e-19 87.0
Msa0754500 MtrunA17_Chr1g0180641 36.000 125 77 3 5 127 1 124 1.88e-17 77.0
Msa0754500 MtrunA17_Chr4g0050121 34.959 123 80 0 6 128 42 164 1.36e-16 75.9
Msa0754500 MtrunA17_Chr7g0242971 34.559 136 84 2 1 133 129 262 2.61e-16 77.0
Msa0754500 MtrunA17_Chr7g0266351 30.709 127 88 0 1 127 84 210 7.66e-15 72.4
Msa0754500 MtrunA17_Chr8g0388191 37.594 133 61 5 170 302 16 126 9.50e-15 69.7
Msa0754500 MtrunA17_Chr8g0384791 32.609 138 84 4 1 133 286 419 2.51e-13 70.1
Msa0754500 MtrunA17_Chr8g0391961 33.065 124 76 2 1 120 23 143 1.28e-12 64.3
Msa0754500 MtrunA17_Chr7g0231251 31.452 124 84 1 1 124 357 479 5.81e-12 65.9
Msa0754500 MtrunA17_Chr1g0208401 36.000 100 64 0 28 127 3 102 2.56e-11 59.7
Msa0754500 MtrunA17_Chr1g0181271 35.897 78 49 1 48 124 6 83 7.74e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAACATGATGTCATTT+TGG 0.200719 5_2:+8068635 Msa0754500:CDS
AATTATATTGATGAATTATT+AGG 0.223556 5_2:+8068708 Msa0754500:CDS
TCCTAACTGCCTTTCTTGTT+AGG 0.234019 5_2:-8068593 None:intergenic
AGTTGAAGCTATTGGTCTTT+TGG 0.248936 5_2:+8064190 Msa0754500:CDS
AATCCTCTAATTAATGAAAT+TGG 0.263104 5_2:+8064302 Msa0754500:CDS
CAAAACAGACAGCAAGATTC+TGG 0.271559 5_2:+8064259 Msa0754500:CDS
CTACTCCTCTGTCACTGTTT+TGG 0.280845 5_2:+8064166 Msa0754500:CDS
ATTGCCTACCTCATCTTTGT+AGG 0.314350 5_2:-8068553 None:intergenic
CCTAACTGCCTTTCTTGTTA+GGG 0.331209 5_2:-8068592 None:intergenic
TCACCAATTTCATTAATTAG+AGG 0.357450 5_2:-8064305 None:intergenic
GCTAATACAATCATGGGTTA+TGG 0.383237 5_2:+8064089 None:intergenic
ACTATGTAGTGTCGTTTGTT+AGG 0.385184 5_2:+8064369 Msa0754500:CDS
TTCAATTGTATTAGAAGTGT+TGG 0.429545 5_2:+8064805 Msa0754500:CDS
TTCATTAATTAGAGGATTGG+TGG 0.433038 5_2:-8064297 None:intergenic
GTTGGTTCAAGTTGATAGAA+TGG 0.448567 5_2:-8068886 None:intergenic
CCCTAACAAGAAAGGCAGTT+AGG 0.456411 5_2:+8068592 Msa0754500:CDS
TCAAAATTTAAATGCAAAGA+AGG 0.460513 5_2:+8068801 Msa0754500:CDS
AATTTCATTAATTAGAGGAT+TGG 0.461250 5_2:-8064300 None:intergenic
AGAATGGTAACTCGGTCCAT+TGG 0.465675 5_2:-8068870 None:intergenic
CTAACTGCCTTTCTTGTTAG+GGG 0.467001 5_2:-8068591 None:intergenic
ATAAGTGAGTACAAAGTAGT+AGG 0.469291 5_2:-8064470 None:intergenic
TTGCTGAATTCAGTAGACTA+TGG 0.478470 5_2:+8064896 Msa0754500:CDS
GAATGGTAACTCGGTCCATT+GGG 0.488126 5_2:-8068869 None:intergenic
TGAGCTTGTGGCACTCCCAA+TGG 0.488217 5_2:+8068854 Msa0754500:CDS
AATTATTAGGAGAAAGAGAA+AGG 0.495743 5_2:+8068721 Msa0754500:CDS
CATATCTCCCCTAACAAGAA+AGG 0.502952 5_2:+8068584 Msa0754500:CDS
ACAAACGACACTACATAGTC+GGG 0.513895 5_2:-8064365 None:intergenic
ATGTAGTGTCGTTTGTTAGG+AGG 0.532381 5_2:+8064372 Msa0754500:CDS
AACAAACGACACTACATAGT+CGG 0.533616 5_2:-8064366 None:intergenic
TCAGAAGCAACATCTTTGAA+TGG 0.548770 5_2:-8068834 None:intergenic
GAATTCAGCAATCCTCTGCC+AGG 0.550570 5_2:-8064884 None:intergenic
GAAAAGGAGGAGTTGATGAA+AGG 0.556432 5_2:+8068666 Msa0754500:CDS
TTTGGAAAAGGATGAAAAGG+AGG 0.556727 5_2:+8068653 Msa0754500:CDS
AGGCAGTTAGGAAAAGTGTT+CGG 0.561991 5_2:+8068604 Msa0754500:CDS
AGATGTTGCTTCTGAGCTTG+TGG 0.567179 5_2:+8068842 Msa0754500:CDS
TGCACAAGAAGTCCTGGCAG+AGG 0.573468 5_2:+8064872 Msa0754500:CDS
GATGAATGTTACTAGAGTGA+AGG 0.581123 5_2:+8068743 Msa0754500:CDS
GGCAATAACCTACAAAGATG+AGG 0.605269 5_2:+8068545 Msa0754500:CDS
AGCAAAATTCAAAGACACAA+AGG 0.611547 5_2:+8068524 Msa0754500:CDS
ATGAAAGGAAGAAGAAGCTG+TGG 0.613856 5_2:+8068681 Msa0754500:CDS
AGTGAAGGTAAAGATGACAA+AGG 0.626326 5_2:+8068758 Msa0754500:CDS
ATAACCTACAAAGATGAGGT+AGG 0.652764 5_2:+8068549 Msa0754500:CDS
AAATTTAAATGCAAAGAAGG+AGG 0.657803 5_2:+8068804 Msa0754500:CDS
ACCAAGTAGAAAATTGTCTG+TGG 0.664367 5_2:-8064129 None:intergenic
AACTTCCAAAACAGTGACAG+AGG 0.665415 5_2:-8064171 None:intergenic
AAGTTGATAGAATGGTAACT+CGG 0.691380 5_2:-8068878 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATATTTTTTTAGCAA+AGG - chr5_2:8064520-8064539 None:intergenic 10.0%
!!! TTTTTTTAATTAGTTTTGTA+AGG + chr5_2:8065650-8065669 Msa0754500:intron 10.0%
!! TTTCTTAAATAATTACTATA+TGG + chr5_2:8065907-8065926 Msa0754500:intron 10.0%
!!! TTTATTAGTCTTTAATATTT+TGG - chr5_2:8066331-8066350 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATTA+AGG + chr5_2:8067117-8067136 Msa0754500:intron 10.0%
!!! TTATGATATTGAATAATTTT+TGG - chr5_2:8067760-8067779 None:intergenic 10.0%
!! ATATGTTAAATAATAAGTAT+TGG - chr5_2:8067826-8067845 None:intergenic 10.0%
!! AATTATATTGATGAATTATT+AGG + chr5_2:8068708-8068727 Msa0754500:CDS 10.0%
!!! TGGTATTATTGATTATATTA+TGG + chr5_2:8064916-8064935 Msa0754500:intron 15.0%
!!! GGTATTATTGATTATATTAT+GGG + chr5_2:8064917-8064936 Msa0754500:intron 15.0%
!!! GATTTAAATTTTTTACTTTG+AGG - chr5_2:8064987-8065006 None:intergenic 15.0%
!! TTTAATTGAATATGGAATTT+AGG - chr5_2:8065178-8065197 None:intergenic 15.0%
!! TTTGTGAATTTAATTGAATA+TGG - chr5_2:8065186-8065205 None:intergenic 15.0%
!!! AAGTTAACTTTAAAGAATTA+TGG + chr5_2:8065426-8065445 Msa0754500:intron 15.0%
!!! CATTTGTAAATTTGTTTATA+TGG - chr5_2:8065460-8065479 None:intergenic 15.0%
!! TGTTAAACTTAAAAAAATTG+TGG - chr5_2:8065561-8065580 None:intergenic 15.0%
!! ATTTGAATAATTAAAAAGGA+AGG - chr5_2:8066660-8066679 None:intergenic 15.0%
!! TGACATTTGAATAATTAAAA+AGG - chr5_2:8066664-8066683 None:intergenic 15.0%
!!! AATATTTTGATATTCTAACT+AGG + chr5_2:8067484-8067503 Msa0754500:intron 15.0%
!! ATTATGAAGTATATGATATA+AGG - chr5_2:8068336-8068355 None:intergenic 15.0%
!! AATTTCATTAATTAGAGGAT+TGG - chr5_2:8064303-8064322 None:intergenic 20.0%
!! AATCCTCTAATTAATGAAAT+TGG + chr5_2:8064302-8064321 Msa0754500:CDS 20.0%
!!! TTCTTTAAAGCTTTCTTTTT+TGG + chr5_2:8064759-8064778 Msa0754500:intron 20.0%
!!! TTATTGATTATATTATGGGT+TGG + chr5_2:8064921-8064940 Msa0754500:intron 20.0%
!!! TATTGATTATATTATGGGTT+GGG + chr5_2:8064922-8064941 Msa0754500:intron 20.0%
!! AATTTAAATCACCTCAAAAA+CGG + chr5_2:8064997-8065016 Msa0754500:intron 20.0%
!! AATATGGAATTTAGGTAAAA+AGG - chr5_2:8065170-8065189 None:intergenic 20.0%
!! AACTTGTAAATTTACTTATG+TGG + chr5_2:8065505-8065524 Msa0754500:intron 20.0%
!!! TTTTAATTAGTTTTGTAAGG+AGG + chr5_2:8065653-8065672 Msa0754500:intron 20.0%
!! CTATAATTAATTCATAGTAC+TGG + chr5_2:8065814-8065833 Msa0754500:intron 20.0%
!!! TATGGTTTATTTACTTGTTA+CGG + chr5_2:8065925-8065944 Msa0754500:intron 20.0%
!! TTAGATCTAATTATAATGTG+TGG + chr5_2:8066257-8066276 Msa0754500:intron 20.0%
!! CTAATAAAAGTCAATGTATA+AGG + chr5_2:8066343-8066362 Msa0754500:intron 20.0%
!! AAATTAAGGAGAGATAAAAA+TGG + chr5_2:8067131-8067150 Msa0754500:intron 20.0%
!!! TGAAATGAGTCAATTATTTT+AGG + chr5_2:8067292-8067311 Msa0754500:intron 20.0%
!! TTACAAAAGACTCAAAATTA+TGG + chr5_2:8067326-8067345 Msa0754500:intron 20.0%
!! TACAAAAGACTCAAAATTAT+GGG + chr5_2:8067327-8067346 Msa0754500:intron 20.0%
!! TAAGCATCAATTTACTATAT+TGG - chr5_2:8067462-8067481 None:intergenic 20.0%
!!! TTGATTTGTAAAACCATTTT+TGG + chr5_2:8067604-8067623 Msa0754500:intron 20.0%
!!! TGATTTGTAAAACCATTTTT+GGG + chr5_2:8067605-8067624 Msa0754500:intron 20.0%
!!! TATCTTTTAAGTAAAAGTCT+GGG - chr5_2:8067985-8068004 None:intergenic 20.0%
!!! TTATCTTTTAAGTAAAAGTC+TGG - chr5_2:8067986-8068005 None:intergenic 20.0%
!! TCAAAATTTAAATGCAAAGA+AGG + chr5_2:8068801-8068820 Msa0754500:CDS 20.0%
! TCACCAATTTCATTAATTAG+AGG - chr5_2:8064308-8064327 None:intergenic 25.0%
!!! TCCAAAACATTTTTTTAGTC+GGG - chr5_2:8064619-8064638 None:intergenic 25.0%
!!! CTCCAAAACATTTTTTTAGT+CGG - chr5_2:8064620-8064639 None:intergenic 25.0%
!!! TATTTTTATCCACTTGCAAA+AGG - chr5_2:8064730-8064749 None:intergenic 25.0%
!! TTCAATTGTATTAGAAGTGT+TGG + chr5_2:8064805-8064824 Msa0754500:CDS 25.0%
! AAATAAAACATGGTTAGGAA+TGG - chr5_2:8064955-8064974 None:intergenic 25.0%
! AAGACAAATAAAACATGGTT+AGG - chr5_2:8064960-8064979 None:intergenic 25.0%
! GTTACAAGACAAATAAAACA+TGG - chr5_2:8064965-8064984 None:intergenic 25.0%
!!! GTTTTCTATTTCTTTGTTCA+TGG - chr5_2:8065148-8065167 None:intergenic 25.0%
!!! ATTCAGTAGCTTTAGATAAT+TGG + chr5_2:8065212-8065231 Msa0754500:intron 25.0%
!!! TTCAGTAGCTTTAGATAATT+GGG + chr5_2:8065213-8065232 Msa0754500:intron 25.0%
! ATAAACATGTAAAGTGTAGA+GGG + chr5_2:8065395-8065414 Msa0754500:intron 25.0%
!! AAATGAAATAAAGATTAGCC+CGG + chr5_2:8065475-8065494 Msa0754500:intron 25.0%
!!! AAAATGACTCTCTTTTTTAG+AGG - chr5_2:8065613-8065632 None:intergenic 25.0%
!!! TTGTTTTTGTTGTGAAAGTA+TGG - chr5_2:8065680-8065699 None:intergenic 25.0%
! CTTTCACAACAAAAACAAAA+AGG + chr5_2:8065682-8065701 Msa0754500:intron 25.0%
! TATCTTCTTGAAATTCTAGA+AGG - chr5_2:8065885-8065904 None:intergenic 25.0%
! TAATAATCATCCAATTGTGA+GGG - chr5_2:8066447-8066466 None:intergenic 25.0%
! TTAATAATCATCCAATTGTG+AGG - chr5_2:8066448-8066467 None:intergenic 25.0%
! CACAATTGGATGATTATTAA+AGG + chr5_2:8066448-8066467 Msa0754500:intron 25.0%
! ATGAAAAATGTTAGAACTGA+TGG - chr5_2:8066546-8066565 None:intergenic 25.0%
!! TCTAACATTTTTCATCTCTT+AGG + chr5_2:8066551-8066570 Msa0754500:intron 25.0%
!! AAGTTGTGTCTTTTCATTTT+TGG + chr5_2:8066609-8066628 Msa0754500:intron 25.0%
! TAATTAAAAAGGAAGGTTTG+AGG - chr5_2:8066653-8066672 None:intergenic 25.0%
! CAAACAAGTTCATTCAATTA+GGG - chr5_2:8066861-8066880 None:intergenic 25.0%
! TCAAACAAGTTCATTCAATT+AGG - chr5_2:8066862-8066881 None:intergenic 25.0%
! GTAAATGACTCACTTAATAA+GGG - chr5_2:8067082-8067101 None:intergenic 25.0%
! AGTAAATGACTCACTTAATA+AGG - chr5_2:8067083-8067102 None:intergenic 25.0%
!! GCAAATTAAGTTGTTTATTC+TGG + chr5_2:8067389-8067408 Msa0754500:intron 25.0%
!! TTTTCAGTTTGTAGACTTTA+TGG + chr5_2:8067522-8067541 Msa0754500:intron 25.0%
! TTTCAGTTTGTAGACTTTAT+GGG + chr5_2:8067523-8067542 Msa0754500:intron 25.0%
! TGAGAAAAAAAGTTATGCTA+TGG - chr5_2:8067680-8067699 None:intergenic 25.0%
!! TTATGGACAAAAGACTATTT+TGG - chr5_2:8067723-8067742 None:intergenic 25.0%
!! AGTCTTTTGTCCATAAAAAA+TGG + chr5_2:8067727-8067746 Msa0754500:intron 25.0%
!!! TGGTCTTATACCATTTTTTA+TGG - chr5_2:8067740-8067759 None:intergenic 25.0%
!!! TTTTGCATCTAAGATATGAT+CGG - chr5_2:8067951-8067970 None:intergenic 25.0%
!!! ATCTTTTAAGTAAAAGTCTG+GGG - chr5_2:8067984-8068003 None:intergenic 25.0%
! TTTGTCTACTTATAGATTCA+TGG - chr5_2:8068094-8068113 None:intergenic 25.0%
! TATTGAGCAGAAAAAAATTC+AGG + chr5_2:8068252-8068271 Msa0754500:intron 25.0%
!!! TGGTATTATTTTGGAAAGAT+TGG - chr5_2:8068437-8068456 None:intergenic 25.0%
!! TACTGATCATGGTATTATTT+TGG - chr5_2:8068446-8068465 None:intergenic 25.0%
! CTTGTCTTGAATTTCTTAAT+AGG + chr5_2:8068478-8068497 Msa0754500:intron 25.0%
! AATTATTAGGAGAAAGAGAA+AGG + chr5_2:8068721-8068740 Msa0754500:CDS 25.0%
! AAATTTAAATGCAAAGAAGG+AGG + chr5_2:8068804-8068823 Msa0754500:CDS 25.0%
!!! TCTTTTGGAGTCAATCAAAA+TGG + chr5_2:8064205-8064224 Msa0754500:CDS 30.0%
TTCATTAATTAGAGGATTGG+TGG - chr5_2:8064300-8064319 None:intergenic 30.0%
ATAAGTGAGTACAAAGTAGT+AGG - chr5_2:8064473-8064492 None:intergenic 30.0%
! TCCCGACTAAAAAAATGTTT+TGG + chr5_2:8064615-8064634 Msa0754500:intron 30.0%
!! CGACTAAAAAAATGTTTTGG+AGG + chr5_2:8064618-8064637 Msa0754500:intron 30.0%
!!! AAAATGTTTTGGAGGCAATT+TGG + chr5_2:8064626-8064645 Msa0754500:intron 30.0%
! CTTTGAAGATAGACATAGAA+AGG + chr5_2:8064649-8064668 Msa0754500:intron 30.0%
TTGTGCAGAAAAAAACAGAA+GGG - chr5_2:8064859-8064878 None:intergenic 30.0%
!! ATCATTTACAACCGTTTTTG+AGG - chr5_2:8065011-8065030 None:intergenic 30.0%
TTTCTTGAAGACTAAAAGGT+GGG - chr5_2:8065319-8065338 None:intergenic 30.0%
! TTTTCTTGAAGACTAAAAGG+TGG - chr5_2:8065320-8065339 None:intergenic 30.0%
!! ACCTTTTAGTCTTCAAGAAA+AGG + chr5_2:8065319-8065338 Msa0754500:intron 30.0%
! TCCTTTTCTTGAAGACTAAA+AGG - chr5_2:8065323-8065342 None:intergenic 30.0%
CATAAACATGTAAAGTGTAG+AGG + chr5_2:8065394-8065413 Msa0754500:intron 30.0%
! AATGAAATAAAGATTAGCCC+GGG + chr5_2:8065476-8065495 Msa0754500:intron 30.0%
!! AATTTACAAGTTGATATCCC+CGG - chr5_2:8065497-8065516 None:intergenic 30.0%
!!! CTTATGTGGCTATTTTTTGT+TGG + chr5_2:8065519-8065538 Msa0754500:intron 30.0%
!! AAAAAGACTGTTCTAAGGTA+AGG - chr5_2:8065588-8065607 None:intergenic 30.0%
GCATAACATGTCACTAAAAA+TGG - chr5_2:8065759-8065778 None:intergenic 30.0%
ATATTTCATCTGCAGGTTAA+TGG - chr5_2:8066373-8066392 None:intergenic 30.0%
!! TTTTAATTCACCCTCACAAT+TGG + chr5_2:8066434-8066453 Msa0754500:intron 30.0%
GGAATATATTGAATTGAGAG+TGG + chr5_2:8067209-8067228 Msa0754500:intron 30.0%
AAAGACTCAAAATTATGGGA+CGG + chr5_2:8067331-8067350 Msa0754500:intron 30.0%
!! TGCGTTTGATTTGTTAAAGA+AGG + chr5_2:8067546-8067565 Msa0754500:intron 30.0%
!! TTGACTTTGAGACACAATAT+TGG - chr5_2:8067888-8067907 None:intergenic 30.0%
! TTTTCTTGTAGTAGGACAAT+GGG + chr5_2:8068125-8068144 Msa0754500:intron 30.0%
! CTATTGATGGTTACATTACA+TGG - chr5_2:8068159-8068178 None:intergenic 30.0%
GCTTAAAGCTTGACTAATAT+TGG + chr5_2:8068178-8068197 Msa0754500:intron 30.0%
TTCAAGACAAGCAAACAATA+CGG - chr5_2:8068469-8068488 None:intergenic 30.0%
AGCAAAATTCAAAGACACAA+AGG + chr5_2:8068524-8068543 Msa0754500:CDS 30.0%
!! TTCAGAACATGATGTCATTT+TGG + chr5_2:8068635-8068654 Msa0754500:CDS 30.0%
!!! ACATGATGTCATTTTGGAAA+AGG + chr5_2:8068641-8068660 Msa0754500:CDS 30.0%
!! CATTTTGGAAAAGGATGAAA+AGG + chr5_2:8068650-8068669 Msa0754500:CDS 30.0%
!! AAGTTGATAGAATGGTAACT+CGG - chr5_2:8068881-8068900 None:intergenic 30.0%
! TCCACAGACAATTTTCTACT+TGG + chr5_2:8064128-8064147 Msa0754500:CDS 35.0%
ACCAAGTAGAAAATTGTCTG+TGG - chr5_2:8064132-8064151 None:intergenic 35.0%
!!! GTTTTGGAAGTTGAAGCTAT+TGG + chr5_2:8064182-8064201 Msa0754500:CDS 35.0%
!!! AGTTGAAGCTATTGGTCTTT+TGG + chr5_2:8064190-8064209 Msa0754500:CDS 35.0%
!! TGTCTGTTTTGAACATGACA+TGG - chr5_2:8064250-8064269 None:intergenic 35.0%
AACAAACGACACTACATAGT+CGG - chr5_2:8064369-8064388 None:intergenic 35.0%
!! ACTATGTAGTGTCGTTTGTT+AGG + chr5_2:8064369-8064388 Msa0754500:CDS 35.0%
AGGTACTTCACGAAAAACAT+GGG - chr5_2:8064453-8064472 None:intergenic 35.0%
TAGGTACTTCACGAAAAACA+TGG - chr5_2:8064454-8064473 None:intergenic 35.0%
! TTGATTCTACCTTTTGCAAG+TGG + chr5_2:8064718-8064737 Msa0754500:intron 35.0%
TGTGCAGAAAAAAACAGAAG+GGG - chr5_2:8064858-8064877 None:intergenic 35.0%
CTTGTGCAGAAAAAAACAGA+AGG - chr5_2:8064860-8064879 None:intergenic 35.0%
TTGCTGAATTCAGTAGACTA+TGG + chr5_2:8064896-8064915 Msa0754500:CDS 35.0%
CTTTCTTATCCAAGATCCAT+AGG + chr5_2:8065237-8065256 Msa0754500:intron 35.0%
TTATCCAAGATCCATAGGAT+TGG + chr5_2:8065242-8065261 Msa0754500:intron 35.0%
ATTATGCAACACCAATCCTA+TGG - chr5_2:8065256-8065275 None:intergenic 35.0%
! ATGAAATAAAGATTAGCCCG+GGG + chr5_2:8065477-8065496 Msa0754500:intron 35.0%
!! ATTTACAAGTTGATATCCCC+GGG - chr5_2:8065496-8065515 None:intergenic 35.0%
!!! GGCTATTTTTTGTTGGTTGT+TGG + chr5_2:8065526-8065545 Msa0754500:intron 35.0%
AGGACAAAAAGACTGTTCTA+AGG - chr5_2:8065593-8065612 None:intergenic 35.0%
! TGAATGTGTTTGTCCTTTTG+TGG + chr5_2:8065712-8065731 Msa0754500:intron 35.0%
! TACAACTTGATAGCCACAAA+AGG - chr5_2:8065728-8065747 None:intergenic 35.0%
ATGTATTTGATCGTAAGTCC+CGG - chr5_2:8065972-8065991 None:intergenic 35.0%
GTGTTATGTTGTGTTAGTGT+CGG - chr5_2:8066004-8066023 None:intergenic 35.0%
TGCAATTAAGTCTAGTGTGA+TGG - chr5_2:8066098-8066117 None:intergenic 35.0%
TCACACTAGACTTAATTGCA+TGG + chr5_2:8066098-8066117 Msa0754500:intron 35.0%
!! GGCGAATGAATTAAGTTGAA+CGG + chr5_2:8066119-8066138 Msa0754500:intron 35.0%
!! GCGAATGAATTAAGTTGAAC+GGG + chr5_2:8066120-8066139 Msa0754500:intron 35.0%
ACTCCATATAGTTATCGTGA+AGG - chr5_2:8066147-8066166 None:intergenic 35.0%
GAGTATTAAGTTAACGCAAG+TGG + chr5_2:8066163-8066182 Msa0754500:intron 35.0%
AACACAGTGTAAGATTTACG+TGG + chr5_2:8066213-8066232 Msa0754500:intron 35.0%
! TAATGTGTGGTTAGCTCTTA+CGG + chr5_2:8066270-8066289 Msa0754500:intron 35.0%
GTCAATTCAATCTCTTCCTT+AGG + chr5_2:8066297-8066316 Msa0754500:intron 35.0%
AATCTCTTCCTTAGGATTAC+TGG + chr5_2:8066305-8066324 Msa0754500:intron 35.0%
!!! TATTTTGGCCAGTAATCCTA+AGG - chr5_2:8066316-8066335 None:intergenic 35.0%
AAATCAATGCCGTACATAGA+GGG - chr5_2:8066483-8066502 None:intergenic 35.0%
!!! TTTCATTTTTGGCAGTTGCT+AGG + chr5_2:8066620-8066639 Msa0754500:intron 35.0%
!!! TTCATTTTTGGCAGTTGCTA+GGG + chr5_2:8066621-8066640 Msa0754500:intron 35.0%
!!! ATTTTGGTGCCCATAAAAAG+TGG + chr5_2:8066819-8066838 Msa0754500:intron 35.0%
CAAGTTCATTCAATTAGGGT+GGG - chr5_2:8066857-8066876 None:intergenic 35.0%
ACAAGTTCATTCAATTAGGG+TGG - chr5_2:8066858-8066877 None:intergenic 35.0%
CCACTTTGCATTTATGATAG+TGG - chr5_2:8067191-8067210 None:intergenic 35.0%
CCACTATCATAAATGCAAAG+TGG + chr5_2:8067188-8067207 Msa0754500:intron 35.0%
ACGTTGACATGTGAGATAAA+TGG - chr5_2:8067423-8067442 None:intergenic 35.0%
!!! TGTAAAACCATTTTTGGGAC+AGG + chr5_2:8067610-8067629 Msa0754500:intron 35.0%
GTTATGCTATGGTTTAGTGA+AGG - chr5_2:8067669-8067688 None:intergenic 35.0%
TGTGAAACCAATTGCAAACA+GGG - chr5_2:8067857-8067876 None:intergenic 35.0%
TTGTGAAACCAATTGCAAAC+AGG - chr5_2:8067858-8067877 None:intergenic 35.0%
! GACTCAAGTTTTCTTGTAGT+AGG + chr5_2:8068117-8068136 Msa0754500:intron 35.0%
! GTTTTCTTGTAGTAGGACAA+TGG + chr5_2:8068124-8068143 Msa0754500:intron 35.0%
TTTCTTGTAGTAGGACAATG+GGG + chr5_2:8068126-8068145 Msa0754500:intron 35.0%
!! GTCAAGCTTTAAGCTATTGA+TGG - chr5_2:8068172-8068191 None:intergenic 35.0%
GCATATGATCGATATGTCTA+GGG - chr5_2:8068309-8068328 None:intergenic 35.0%
AGCATATGATCGATATGTCT+AGG - chr5_2:8068310-8068329 None:intergenic 35.0%
AAGAAGGGTGAGGAAAAATA+TGG - chr5_2:8068387-8068406 None:intergenic 35.0%
GGTACTAGAAGAAAAGAAGT+GGG - chr5_2:8068416-8068435 None:intergenic 35.0%
TGGTACTAGAAGAAAAGAAG+TGG - chr5_2:8068417-8068436 None:intergenic 35.0%
!! AAACAATACGGTACTGATCA+TGG - chr5_2:8068457-8068476 None:intergenic 35.0%
ATAACCTACAAAGATGAGGT+AGG + chr5_2:8068549-8068568 Msa0754500:CDS 35.0%
TTTGGAAAAGGATGAAAAGG+AGG + chr5_2:8068653-8068672 Msa0754500:CDS 35.0%
GATGAATGTTACTAGAGTGA+AGG + chr5_2:8068743-8068762 Msa0754500:CDS 35.0%
AGTGAAGGTAAAGATGACAA+AGG + chr5_2:8068758-8068777 Msa0754500:CDS 35.0%
TCAGAAGCAACATCTTTGAA+TGG - chr5_2:8068837-8068856 None:intergenic 35.0%
AACTTCCAAAACAGTGACAG+AGG - chr5_2:8064174-8064193 None:intergenic 40.0%
CAAAACAGACAGCAAGATTC+TGG + chr5_2:8064259-8064278 Msa0754500:CDS 40.0%
ACAAACGACACTACATAGTC+GGG - chr5_2:8064368-8064387 None:intergenic 40.0%
!! ATGTAGTGTCGTTTGTTAGG+AGG + chr5_2:8064372-8064391 Msa0754500:CDS 40.0%
GTACTTCACGAAAAACATGG+GGG - chr5_2:8064451-8064470 None:intergenic 40.0%
GGTACTTCACGAAAAACATG+GGG - chr5_2:8064452-8064471 None:intergenic 40.0%
AAAAACAGAAGGGGAGACAA+GGG - chr5_2:8064849-8064868 None:intergenic 40.0%
AAAAAACAGAAGGGGAGACA+AGG - chr5_2:8064850-8064869 None:intergenic 40.0%
! TTTTTCTGCACAAGAAGTCC+TGG + chr5_2:8064866-8064885 Msa0754500:CDS 40.0%
AACACCAATCCTATGGATCT+TGG - chr5_2:8065249-8065268 None:intergenic 40.0%
TACTGGTATTCTAGTCGTCT+TGG + chr5_2:8065831-8065850 Msa0754500:intron 40.0%
ACTGGTATTCTAGTCGTCTT+GGG + chr5_2:8065832-8065851 Msa0754500:intron 40.0%
!! ATTAGTATCGACACGAATGC+CGG + chr5_2:8065950-8065969 Msa0754500:intron 40.0%
GGTCCTTCACGATAACTATA+TGG + chr5_2:8066141-8066160 Msa0754500:intron 40.0%
GTAAGATTTACGTGGAATGC+AGG + chr5_2:8066221-8066240 Msa0754500:intron 40.0%
AGGGTCAATATTTCATCTGC+AGG - chr5_2:8066380-8066399 None:intergenic 40.0%
CTCTAACTACCCTCTATGTA+CGG + chr5_2:8066471-8066490 Msa0754500:intron 40.0%
CAAATCAATGCCGTACATAG+AGG - chr5_2:8066484-8066503 None:intergenic 40.0%
!!! CCTAGGACACCACTTTTTAT+GGG - chr5_2:8066831-8066850 None:intergenic 40.0%
!!! ACCTAGGACACCACTTTTTA+TGG - chr5_2:8066832-8066851 None:intergenic 40.0%
CTCACTTAATAAGGGACTGA+GGG - chr5_2:8067074-8067093 None:intergenic 40.0%
ACTCACTTAATAAGGGACTG+AGG - chr5_2:8067075-8067094 None:intergenic 40.0%
!!! GCGCTTTTGTTAAGTATCGA+TGG + chr5_2:8067160-8067179 Msa0754500:intron 40.0%
ACTCAAAATTATGGGACGGA+GGG + chr5_2:8067335-8067354 Msa0754500:intron 40.0%
GATTTGTCCTGTCCCAAAAA+TGG - chr5_2:8067620-8067639 None:intergenic 40.0%
AAACACACCCTGTTTGCAAT+TGG + chr5_2:8067847-8067866 Msa0754500:intron 40.0%
TTCTTGTAGTAGGACAATGG+GGG + chr5_2:8068127-8068146 Msa0754500:intron 40.0%
! TTTTCTCTTCCTTGACGCAT+AGG + chr5_2:8068217-8068236 Msa0754500:intron 40.0%
ATTAAGTGACCTATGCGTCA+AGG - chr5_2:8068229-8068248 None:intergenic 40.0%
TATGATCGATATGTCTAGGG+TGG - chr5_2:8068306-8068325 None:intergenic 40.0%
AGAAGTGGGAAGGAAAAGAA+GGG - chr5_2:8068402-8068421 None:intergenic 40.0%
AAGAAGTGGGAAGGAAAAGA+AGG - chr5_2:8068403-8068422 None:intergenic 40.0%
CTAGAAGAAAAGAAGTGGGA+AGG - chr5_2:8068412-8068431 None:intergenic 40.0%
GGCAATAACCTACAAAGATG+AGG + chr5_2:8068545-8068564 Msa0754500:CDS 40.0%
ATTGCCTACCTCATCTTTGT+AGG - chr5_2:8068556-8068575 None:intergenic 40.0%
CATATCTCCCCTAACAAGAA+AGG + chr5_2:8068584-8068603 Msa0754500:CDS 40.0%
CTAACTGCCTTTCTTGTTAG+GGG - chr5_2:8068594-8068613 None:intergenic 40.0%
CCTAACTGCCTTTCTTGTTA+GGG - chr5_2:8068595-8068614 None:intergenic 40.0%
TCCTAACTGCCTTTCTTGTT+AGG - chr5_2:8068596-8068615 None:intergenic 40.0%
!! AGGCAGTTAGGAAAAGTGTT+CGG + chr5_2:8068604-8068623 Msa0754500:CDS 40.0%
!! GAAAAGGAGGAGTTGATGAA+AGG + chr5_2:8068666-8068685 Msa0754500:CDS 40.0%
ATGAAAGGAAGAAGAAGCTG+TGG + chr5_2:8068681-8068700 Msa0754500:CDS 40.0%
! CTACTCCTCTGTCACTGTTT+TGG + chr5_2:8064166-8064185 Msa0754500:CDS 45.0%
!! TTAGTATCGACACGAATGCC+GGG + chr5_2:8065951-8065970 Msa0754500:intron 45.0%
! GTGATGGCATAGCTACTTTG+AGG - chr5_2:8066082-8066101 None:intergenic 45.0%
TACGTGGAATGCAGGATTAC+TGG + chr5_2:8066229-8066248 Msa0754500:intron 45.0%
TCTCACTTGTGGGGTTGAAA+GGG - chr5_2:8066399-8066418 None:intergenic 45.0%
ATCTCACTTGTGGGGTTGAA+AGG - chr5_2:8066400-8066419 None:intergenic 45.0%
TTGCCATCGATCTCACTTGT+GGG - chr5_2:8066409-8066428 None:intergenic 45.0%
TTTGCCATCGATCTCACTTG+TGG - chr5_2:8066410-8066429 None:intergenic 45.0%
CCCATAAAAAGTGGTGTCCT+AGG + chr5_2:8066828-8066847 Msa0754500:intron 45.0%
GACTCAAAATTATGGGACGG+AGG + chr5_2:8067334-8067353 Msa0754500:intron 45.0%
! TTTGGGACAGGACAAATCAG+AGG + chr5_2:8067622-8067641 Msa0754500:intron 45.0%
TCTTGTAGTAGGACAATGGG+GGG + chr5_2:8068128-8068147 Msa0754500:intron 45.0%
CCCTAACAAGAAAGGCAGTT+AGG + chr5_2:8068592-8068611 Msa0754500:CDS 45.0%
! AGATGTTGCTTCTGAGCTTG+TGG + chr5_2:8068842-8068861 Msa0754500:CDS 45.0%
GAATGGTAACTCGGTCCATT+GGG - chr5_2:8068872-8068891 None:intergenic 45.0%
AGAATGGTAACTCGGTCCAT+TGG - chr5_2:8068873-8068892 None:intergenic 45.0%
!! AAAAGATTTATTTATAATTA+AGG + chr5_2:8066705-8066724 Msa0754500:intron 5.0%
!!! ATAATTAAAAATCATAATTT+TGG + chr5_2:8066803-8066822 Msa0754500:intron 5.0%
CACGAAAAACATGGGGGCTA+GGG - chr5_2:8064445-8064464 None:intergenic 50.0%
TCACGAAAAACATGGGGGCT+AGG - chr5_2:8064446-8064465 None:intergenic 50.0%
GAATTCAGCAATCCTCTGCC+AGG - chr5_2:8064887-8064906 None:intergenic 50.0%
ACTGTCTGTCTAGTCAAGCG+AGG - chr5_2:8065294-8065313 None:intergenic 50.0%
AACCCCACAAGTGAGATCGA+TGG + chr5_2:8066403-8066422 Msa0754500:intron 50.0%
TGCCATCGATCTCACTTGTG+GGG - chr5_2:8066408-8066427 None:intergenic 50.0%
! ATCGATATGTCTAGGGTGGC+GGG - chr5_2:8068302-8068321 None:intergenic 50.0%
! GATCGATATGTCTAGGGTGG+CGG - chr5_2:8068303-8068322 None:intergenic 50.0%
TGGGAAGGAAAAGAAGGGTG+AGG - chr5_2:8068397-8068416 None:intergenic 50.0%
TGCACAAGAAGTCCTGGCAG+AGG + chr5_2:8064872-8064891 Msa0754500:CDS 55.0%
TCAATTAGGGTGGGCGACCT+AGG - chr5_2:8066848-8066867 None:intergenic 55.0%
TGTAGTAGGACAATGGGGGG+AGG + chr5_2:8068131-8068150 Msa0754500:intron 55.0%
GTAGTAGGACAATGGGGGGA+GGG + chr5_2:8068132-8068151 Msa0754500:intron 55.0%
! TCGATATGTCTAGGGTGGCG+GGG - chr5_2:8068301-8068320 None:intergenic 55.0%
TGAGCTTGTGGCACTCCCAA+TGG + chr5_2:8068854-8068873 Msa0754500:CDS 55.0%
TGGCGGGGCACAAAGGGTCA+TGG - chr5_2:8068286-8068305 None:intergenic 65.0%
!! CTAGGGTGGCGGGGCACAAA+GGG - chr5_2:8068292-8068311 None:intergenic 65.0%
!! TCTAGGGTGGCGGGGCACAA+AGG - chr5_2:8068293-8068312 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8064101 8068902 8064101 ID=Msa0754500;Name=Msa0754500
chr5_2 mRNA 8064101 8068902 8064101 ID=Msa0754500-mRNA-1;Parent=Msa0754500;Name=Msa0754500-mRNA-1;_AED=0.71;_eAED=0.72;_QI=0|0|0|0.33|1|1|3|0|302
chr5_2 exon 8064101 8064480 8064101 ID=Msa0754500-mRNA-1:exon:3659;Parent=Msa0754500-mRNA-1
chr5_2 exon 8064792 8064917 8064792 ID=Msa0754500-mRNA-1:exon:3660;Parent=Msa0754500-mRNA-1
chr5_2 exon 8068500 8068902 8068500 ID=Msa0754500-mRNA-1:exon:3661;Parent=Msa0754500-mRNA-1
chr5_2 CDS 8064101 8064480 8064101 ID=Msa0754500-mRNA-1:cds;Parent=Msa0754500-mRNA-1
chr5_2 CDS 8064792 8064917 8064792 ID=Msa0754500-mRNA-1:cds;Parent=Msa0754500-mRNA-1
chr5_2 CDS 8068500 8068902 8068500 ID=Msa0754500-mRNA-1:cds;Parent=Msa0754500-mRNA-1
Gene Sequence

>Msa0754500

ATGGGTTATGGAATTTGTTTCAGAAACTCCACAGACAATTTTCTACTTGGTAAGTCAGATCTCAACTACTCCTCTGTCACTGTTTTGGAAGTTGAAGCTATTGGTCTTTTGGAGTCAATCAAAATGGCAATCTCAAAAGCTTTTCACCATGTCATGTTCAAAACAGACAGCAAGATTCTGGTTGACTTACTAAAATCCACCAATCCTCTAATTAATGAAATTGGTGATTTAGTTTATGAATGTAAAACTTTGTTGCTCAGTAATCCCGACTATGTAGTGTCGTTTGTTAGGAGGCAAACAAATAAAGTAGCTCACAGCATCGCTAGAGCTGCTTTATCTCACCCTAGCCCCCATGTTTTTCGTGAAGTACCTACTACTTTAGCTATTGAGTACTTCAATTGTATTAGAAGTGTTGGAAGTGTGAGACAAGAAATCCCTTGTCTCCCCTTCTGTTTTTTTCTGCACAAGAAGTCCTGGCAGAGGATTGCTGAATTCAGTAGACTATGGAAAATATCATATGAAAAATTAGCAGCAAAATTCAAAGACACAAAGGCAATAACCTACAAAGATGAGGTAGGCAATAAAAAGATCATATCTCCCCTAACAAGAAAGGCAGTTAGGAAAAGTGTTCGGTTCGCAGATTCAGAACATGATGTCATTTTGGAAAAGGATGAAAAGGAGGAGTTGATGAAAGGAAGAAGAAGCTGTGGTAGTAATTATATTGATGAATTATTAGGAGAAAGAGAAAGGATGAATGTTACTAGAGTGAAGGTAAAGATGACAAAGGAAGAAGCAGCTAAGTTACTGTCAAAATTTAAATGCAAAGAAGGAGGAGTTCTTCCATTCAAAGATGTTGCTTCTGAGCTTGTGGCACTCCCAATGGACCGAGTTACCATTCTATCAACTTGA

Protein sequence

>Msa0754500

MGYGICFRNSTDNFLLGKSDLNYSSVTVLEVEAIGLLESIKMAISKAFHHVMFKTDSKILVDLLKSTNPLINEIGDLVYECKTLLLSNPDYVVSFVRRQTNKVAHSIARAALSHPSPHVFREVPTTLAIEYFNCIRSVGSVRQEIPCLPFCFFLHKKSWQRIAEFSRLWKISYEKLAAKFKDTKAITYKDEVGNKKIISPLTRKAVRKSVRFADSEHDVILEKDEKEELMKGRRSCGSNYIDELLGERERMNVTRVKVKMTKEEAAKLLSKFKCKEGGVLPFKDVASELVALPMDRVTILST*