Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535460 | XP_013455015.1 | 98.986 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535460 | sp|Q09893|YAI5_SCHPO | 37.984 | 129 | 76 | 3 | 19 | 144 | 8 | 135 | 7.90e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535460 | A0A072UHY2 | 98.986 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0535460 | Msa0591930 | 0.929514 | 6.226768e-93 | -8.615850e-47 |
| Msa0535460 | Msa0631860 | 0.885503 | 7.689320e-72 | -8.615850e-47 |
| Msa0535460 | Msa0670990 | 0.822389 | 2.431881e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535460 | MtrunA17_Chr4g0009921 | 98.986 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 0.0 | 605 |
| Msa0535460 | MtrunA17_Chr7g0238911 | 84.818 | 303 | 37 | 4 | 1 | 296 | 1 | 301 | 0.0 | 518 |
| Msa0535460 | MtrunA17_Chr4g0009961 | 74.150 | 294 | 67 | 3 | 11 | 296 | 8 | 300 | 4.04e-158 | 442 |
| Msa0535460 | MtrunA17_Chr2g0328451 | 56.291 | 302 | 115 | 6 | 1 | 296 | 1 | 291 | 9.58e-113 | 327 |
| Msa0535460 | MtrunA17_Chr4g0031841 | 56.475 | 278 | 105 | 3 | 9 | 286 | 8 | 269 | 2.15e-110 | 321 |
| Msa0535460 | MtrunA17_Chr1g0193721 | 51.111 | 270 | 87 | 2 | 9 | 278 | 4 | 228 | 1.65e-94 | 279 |
| Msa0535460 | MtrunA17_Chr1g0205581 | 45.113 | 266 | 105 | 2 | 14 | 277 | 8 | 234 | 4.29e-77 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535460 | AT5G02230.2 | 66.333 | 300 | 77 | 5 | 1 | 296 | 1 | 280 | 7.56e-133 | 378 |
| Msa0535460 | AT5G02230.1 | 66.333 | 300 | 77 | 5 | 1 | 296 | 1 | 280 | 7.56e-133 | 378 |
| Msa0535460 | AT5G02230.3 | 66.333 | 300 | 77 | 5 | 1 | 296 | 38 | 317 | 4.29e-132 | 377 |
| Msa0535460 | AT5G59480.4 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 2.83e-123 | 354 |
| Msa0535460 | AT5G59480.5 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 2.83e-123 | 354 |
| Msa0535460 | AT5G59480.3 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 2.83e-123 | 354 |
| Msa0535460 | AT5G59480.1 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 2.83e-123 | 354 |
| Msa0535460 | AT5G59480.2 | 60.791 | 278 | 91 | 4 | 1 | 278 | 1 | 260 | 2.64e-121 | 349 |
| Msa0535460 | AT5G59490.1 | 56.180 | 267 | 84 | 2 | 15 | 281 | 10 | 243 | 7.30e-98 | 289 |
| Msa0535460 | AT3G62040.1 | 52.966 | 236 | 66 | 3 | 46 | 280 | 1 | 192 | 3.03e-83 | 249 |
| Msa0535460 | AT2G32150.1 | 46.212 | 264 | 104 | 3 | 14 | 277 | 4 | 229 | 1.23e-82 | 250 |
| Msa0535460 | AT5G59490.2 | 55.932 | 236 | 71 | 2 | 15 | 250 | 10 | 212 | 1.30e-80 | 243 |
| Msa0535460 | AT2G32150.2 | 46.835 | 237 | 88 | 3 | 14 | 250 | 4 | 202 | 1.77e-70 | 218 |
| Msa0535460 | AT2G32150.3 | 45.622 | 217 | 80 | 3 | 14 | 230 | 4 | 182 | 1.69e-61 | 193 |
Find 66 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACTACATTTGAATTT+AGG | 0.088582 | 4_1:+11782224 | None:intergenic |
| TGGAAAGCATTCACAATCTT+AGG | 0.188813 | 4_1:-11782437 | Msa0535460:CDS |
| ATCAACTACATTTGAATTTA+GGG | 0.218826 | 4_1:+11782225 | None:intergenic |
| GGGAAGCTGTGCCTGAATTA+TGG | 0.237248 | 4_1:-11782416 | Msa0535460:CDS |
| TCTGTTCTTCAAAATATTAA+AGG | 0.254928 | 4_1:-11784404 | Msa0535460:intron |
| TCTGATGGCTTGCAAATAAT+TGG | 0.259115 | 4_1:+11783147 | None:intergenic |
| ATTATTGATCTCAGATTATA+TGG | 0.261485 | 4_1:-11784164 | Msa0535460:intron |
| GAACAACTATGTCTGGTCTA+AGG | 0.279798 | 4_1:-11784075 | Msa0535460:CDS |
| GAAGATGACATTGAGTTTCT+AGG | 0.281835 | 4_1:-11783270 | Msa0535460:CDS |
| TTATTAATGAACAATATTAA+AGG | 0.284764 | 4_1:+11782312 | None:intergenic |
| AACCTTCTTTACAAGAACTA+TGG | 0.325183 | 4_1:-11784097 | Msa0535460:CDS |
| GGTACATCACAAAGAGTTAA+AGG | 0.339752 | 4_1:-11782474 | Msa0535460:CDS |
| ATCAGAATTTGCCATTGAAT+TGG | 0.342165 | 4_1:-11783130 | Msa0535460:CDS |
| CTATATAAATAATGCCAAAA+AGG | 0.342608 | 4_1:+11782140 | None:intergenic |
| TTGGATTAGGTTGAGCAAAA+TGG | 0.343856 | 4_1:+11783193 | None:intergenic |
| TATTAATGAACAATATTAAA+GGG | 0.359324 | 4_1:+11782313 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4_1:-11783348 | Msa0535460:CDS |
| GGAAGCTGTGCCTGAATTAT+GGG | 0.383288 | 4_1:-11782415 | Msa0535460:CDS |
| TTCCATAGTTCTTGTAAAGA+AGG | 0.385298 | 4_1:+11784095 | None:intergenic |
| GAAACACTATTCTTGTGGAT+TGG | 0.410797 | 4_1:+11783300 | None:intergenic |
| ATTGAGTTTCTAGGTTCAAC+AGG | 0.416897 | 4_1:-11783261 | Msa0535460:CDS |
| TCTGGTTTCAAGTTCTCATA+TGG | 0.421731 | 4_1:+11783776 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.423151 | 4_1:-11784151 | Msa0535460:CDS |
| GCAAGAGATTCCTCAGAATA+GGG | 0.425915 | 4_1:+11783753 | None:intergenic |
| AACTATGGAACAACTATGTC+TGG | 0.434621 | 4_1:-11784082 | Msa0535460:CDS |
| AAGACTACTAGACTTGGATT+AGG | 0.445717 | 4_1:+11783180 | None:intergenic |
| GTTAAGGGAAAATGAGAAAA+GGG | 0.447443 | 4_1:+11785483 | None:intergenic |
| AGACAAAGTTCATGCTGTTA+AGG | 0.455183 | 4_1:-11783385 | Msa0535460:CDS |
| GGAAAGCATTCACAATCTTA+GGG | 0.460709 | 4_1:-11782436 | Msa0535460:CDS |
| TGTTAAGGGAAAATGAGAAA+AGG | 0.467410 | 4_1:+11785482 | None:intergenic |
| ATGGCGTACGAGGATCGATT+CGG | 0.486437 | 4_1:-11784617 | Msa0535460:CDS |
| AGCAAGAGATTCCTCAGAAT+AGG | 0.488490 | 4_1:+11783752 | None:intergenic |
| TTAAGGATTTCGGATCGAAA+TGG | 0.489486 | 4_1:-11784636 | Msa0535460:intron |
| AAGGAAGCAAGAGGAAGAAG+AGG | 0.492030 | 4_1:+11785583 | None:intergenic |
| GTGACTGATGTTAACTTCCC+AGG | 0.494643 | 4_1:+11782363 | None:intergenic |
| TCTTGCTGAGCCTTCCCTAC+AGG | 0.495080 | 4_1:-11783736 | Msa0535460:CDS |
| AAGCAATACTAAGATATTGA+AGG | 0.503644 | 4_1:+11785564 | None:intergenic |
| GAAGCAAGAGGAAGAAGAGG+GGG | 0.507843 | 4_1:+11785586 | None:intergenic |
| AGATTCCTCAGAATAGGGTC+TGG | 0.510311 | 4_1:+11783758 | None:intergenic |
| AGGAAGCAAGAGGAAGAAGA+GGG | 0.510485 | 4_1:+11785584 | None:intergenic |
| GTTAAGGCACTAAGTAGACT+TGG | 0.514037 | 4_1:-11783369 | Msa0535460:CDS |
| CATCAGAAACACTATTCTTG+TGG | 0.516868 | 4_1:+11783295 | None:intergenic |
| AATCTTGAGAGCCAATTCAA+TGG | 0.517511 | 4_1:+11783119 | None:intergenic |
| ACTTTGTATCCCCTTAGAGC+TGG | 0.529127 | 4_1:-11784437 | Msa0535460:CDS |
| AAATCAGAAGTGGCATACCC+TGG | 0.536084 | 4_1:-11782381 | Msa0535460:CDS |
| AGTGCTTACAAGTTTCCTGT+AGG | 0.536657 | 4_1:+11783721 | None:intergenic |
| AACAACTATGTCTGGTCTAA+GGG | 0.538656 | 4_1:-11784074 | Msa0535460:intron |
| GGAAGCAAGAGGAAGAAGAG+GGG | 0.538727 | 4_1:+11785585 | None:intergenic |
| GTGCTTACAAGTTTCCTGTA+GGG | 0.557416 | 4_1:+11783722 | None:intergenic |
| AATTCAATGGCAAATTCTGA+TGG | 0.561564 | 4_1:+11783132 | None:intergenic |
| AGTGTCCGCAATATACAAGC+TGG | 0.570089 | 4_1:-11782652 | Msa0535460:CDS |
| TTTGGCAAGACTACTAGACT+TGG | 0.570754 | 4_1:+11783174 | None:intergenic |
| AATCAGAAGTGGCATACCCT+GGG | 0.571637 | 4_1:-11782380 | Msa0535460:CDS |
| TTACAAGTTTCCTGTAGGGA+AGG | 0.575923 | 4_1:+11783726 | None:intergenic |
| TGTTCTTTGAGGGTTAATGT+TGG | 0.580694 | 4_1:+11783095 | None:intergenic |
| TGACTGATGTTAACTTCCCA+GGG | 0.594284 | 4_1:+11782364 | None:intergenic |
| TGTGGGACTTGACACAGTAT+TGG | 0.599786 | 4_1:-11782623 | Msa0535460:intron |
| TCGGATCGAAATGGCGTACG+AGG | 0.602969 | 4_1:-11784627 | Msa0535460:exon |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 4_1:-11783920 | Msa0535460:intron |
| AAATGACATAAAATCAGAAG+TGG | 0.612856 | 4_1:-11782391 | Msa0535460:CDS |
| TATACAAGCTGGAAAACGTG+TGG | 0.625983 | 4_1:-11782641 | Msa0535460:CDS |
| AAGCTTCAAGAGCAATGCAA+AGG | 0.631578 | 4_1:+11785518 | None:intergenic |
| AAGATATTGAAGGAAGCAAG+AGG | 0.638493 | 4_1:+11785574 | None:intergenic |
| ATACAAGCTGGAAAACGTGT+GGG | 0.658378 | 4_1:-11782640 | Msa0535460:CDS |
| TGAAACCAGACCCTATTCTG+AGG | 0.671934 | 4_1:-11783763 | Msa0535460:CDS |
| TTTGCAAGGCCAGCTCTAAG+GGG | 0.679893 | 4_1:+11784428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTATTATAAAA+TGG | - | chr4_1:11783865-11783884 | Msa0535460:intron | 0.0% |
| !! | TATTAATGAACAATATTAAA+GGG | + | chr4_1:11785413-11785432 | None:intergenic | 10.0% |
| !! | TTATTAATGAACAATATTAA+AGG | + | chr4_1:11785414-11785433 | None:intergenic | 10.0% |
| !! | AACATAAATAAATTTGTGTA+TGG | + | chr4_1:11782822-11782841 | None:intergenic | 15.0% |
| !! | TCATTCTCTTAAATTATTAT+TGG | + | chr4_1:11783419-11783438 | None:intergenic | 15.0% |
| !!! | TTTTATTTCATTTTCAATTC+AGG | - | chr4_1:11783765-11783784 | Msa0535460:CDS | 15.0% |
| !!! | TGGATTTTAGAAATTATTTT+TGG | + | chr4_1:11784838-11784857 | None:intergenic | 15.0% |
| !!! | ATATTTTAACATCACTAAAT+TGG | + | chr4_1:11784858-11784877 | None:intergenic | 15.0% |
| !! | ATATGTTTCAATCAATAAAT+AGG | + | chr4_1:11785224-11785243 | None:intergenic | 15.0% |
| !!! | ATTTATTGATTGAAACATAT+AGG | - | chr4_1:11785224-11785243 | Msa0535460:intron | 15.0% |
| !! | CTTATTAAATTTCACTAACA+TGG | - | chr4_1:11782467-11782486 | Msa0535460:CDS | 20.0% |
| !! | AACTCAGAGTTAAATATAAT+GGG | + | chr4_1:11782687-11782706 | None:intergenic | 20.0% |
| !! | AAACTCAGAGTTAAATATAA+TGG | + | chr4_1:11782688-11782707 | None:intergenic | 20.0% |
| !!! | TGTTGAATTTTTAAGGATTT+CGG | - | chr4_1:11783077-11783096 | Msa0535460:intron | 20.0% |
| !! | TCTGTTCTTCAAAATATTAA+AGG | - | chr4_1:11783319-11783338 | Msa0535460:CDS | 20.0% |
| !! | TGAAAGTGATTAAATATAAC+TGG | - | chr4_1:11783436-11783455 | Msa0535460:intron | 20.0% |
| !! | ATTATTGATCTCAGATTATA+TGG | - | chr4_1:11783559-11783578 | Msa0535460:intron | 20.0% |
| !!! | ATATTTTACAGGAAATGATT+AGG | + | chr4_1:11783697-11783716 | None:intergenic | 20.0% |
| !!! | GGTATTGATTGTAAATATAA+TGG | - | chr4_1:11783741-11783760 | Msa0535460:CDS | 20.0% |
| !! | AATTTACTGATGTTAAAACA+CGG | - | chr4_1:11784736-11784755 | Msa0535460:intron | 20.0% |
| !!! | TAATTTTCAGTTGTTTTTTG+AGG | - | chr4_1:11785046-11785065 | Msa0535460:intron | 20.0% |
| !!! | ACAAAAAAATTTAAGAGCAT+AGG | - | chr4_1:11785468-11785487 | Msa0535460:five_prime_UTR | 20.0% |
| !!! | CAAAAAAATTTAAGAGCATA+GGG | - | chr4_1:11785469-11785488 | Msa0535460:five_prime_UTR | 20.0% |
| !! | ATCAACTACATTTGAATTTA+GGG | + | chr4_1:11785501-11785520 | None:intergenic | 20.0% |
| !!! | AATGAATAAATTCTCCTTTT+TGG | - | chr4_1:11785569-11785588 | Msa0535460:five_prime_UTR | 20.0% |
| !! | CTATATAAATAATGCCAAAA+AGG | + | chr4_1:11785586-11785605 | None:intergenic | 20.0% |
| ! | AAGCAATACTAAGATATTGA+AGG | + | chr4_1:11782162-11782181 | None:intergenic | 25.0% |
| ! | GAAAAATGAGTGATTGTTAA+GGG | + | chr4_1:11782258-11782277 | None:intergenic | 25.0% |
| !!! | ATCACTCATTTTTCCATTTT+TGG | - | chr4_1:11782264-11782283 | Msa0535460:three_prime_UTR | 25.0% |
| !!! | TTCCATTTTTGGTAAGTTAA+TGG | - | chr4_1:11782275-11782294 | Msa0535460:three_prime_UTR | 25.0% |
| ! | ATGGTTGATTGAAAATCAAA+AGG | + | chr4_1:11782365-11782384 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTCAATCAACCA+TGG | - | chr4_1:11782364-11782383 | Msa0535460:CDS | 25.0% |
| ! | TACTAATCATAGGTTAATGT+TGG | + | chr4_1:11782415-11782434 | None:intergenic | 25.0% |
| ! | ATATTCATGGTACTAATCAT+AGG | + | chr4_1:11782425-11782444 | None:intergenic | 25.0% |
| ! | TATGATTAGTACCATGAATA+TGG | - | chr4_1:11782424-11782443 | Msa0535460:CDS | 25.0% |
| ! | AAATCTCAAAACCATATTCA+TGG | + | chr4_1:11782438-11782457 | None:intergenic | 25.0% |
| ! | ATTAAGAATCACCATTTCTT+TGG | - | chr4_1:11782504-11782523 | Msa0535460:intron | 25.0% |
| ! | GTATAGAATAACCAAAGAAA+TGG | + | chr4_1:11782518-11782537 | None:intergenic | 25.0% |
| !! | TATTTTATAACGATATCCGA+TGG | - | chr4_1:11782578-11782597 | Msa0535460:intron | 25.0% |
| !!! | GTGCATTTTTTTAGCAAAAA+AGG | + | chr4_1:11782626-11782645 | None:intergenic | 25.0% |
| ! | ATTGATCGTTTGATAAACTT+TGG | + | chr4_1:11782716-11782735 | None:intergenic | 25.0% |
| ! | TCAATTCATCTTTCAAAAGT+TGG | - | chr4_1:11782731-11782750 | Msa0535460:intron | 25.0% |
| !!! | TTCAAAAGTTGGTTTACTTT+TGG | - | chr4_1:11782742-11782761 | Msa0535460:intron | 25.0% |
| !! | TGTTCTGTGTTGAATTTTTA+AGG | - | chr4_1:11783070-11783089 | Msa0535460:intron | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | - | chr4_1:11783148-11783167 | Msa0535460:CDS | 25.0% |
| ! | TCAAGAAACAACATATAACA+CGG | + | chr4_1:11783511-11783530 | None:intergenic | 25.0% |
| ! | AGGAAATGATTAGGAATTTA+AGG | + | chr4_1:11783688-11783707 | None:intergenic | 25.0% |
| !! | ACAATGGAAACATATTTTAC+AGG | + | chr4_1:11783708-11783727 | None:intergenic | 25.0% |
| ! | TCCATTGTTAAATTGTGAAA+AGG | - | chr4_1:11783720-11783739 | Msa0535460:intron | 25.0% |
| !! | ACCTTTTCACAATTTAACAA+TGG | + | chr4_1:11783724-11783743 | None:intergenic | 25.0% |
| ! | AATAACAGTTTGAAAGTGAA+GGG | + | chr4_1:11783850-11783869 | None:intergenic | 25.0% |
| ! | AAATAACAGTTTGAAAGTGA+AGG | + | chr4_1:11783851-11783870 | None:intergenic | 25.0% |
| !!! | ATTATTTGCAGTTTTGTTCA+TGG | - | chr4_1:11783917-11783936 | Msa0535460:intron | 25.0% |
| !! | CAAGCAAAAAACAACTTTTT+AGG | - | chr4_1:11784109-11784128 | Msa0535460:CDS | 25.0% |
| ! | CATTGAATAACTAATGTATC+TGG | + | chr4_1:11784172-11784191 | None:intergenic | 25.0% |
| ! | ACAAGAGAAACAATTAATAG+AGG | + | chr4_1:11784292-11784311 | None:intergenic | 25.0% |
| !!! | TTGCAAATAATTGGTGTTTT+TGG | + | chr4_1:11784570-11784589 | None:intergenic | 25.0% |
| !! | TTTTACTTACTGTTCTTTGA+GGG | + | chr4_1:11784641-11784660 | None:intergenic | 25.0% |
| !! | ATTTTACTTACTGTTCTTTG+AGG | + | chr4_1:11784642-11784661 | None:intergenic | 25.0% |
| !!! | GTGTTTTAACATCAGTAAAT+TGG | + | chr4_1:11784737-11784756 | None:intergenic | 25.0% |
| ! | TAATATCATGCATATTCACT+CGG | + | chr4_1:11784791-11784810 | None:intergenic | 25.0% |
| !!! | TTAGAAATTATTTTTGGAGC+TGG | + | chr4_1:11784832-11784851 | None:intergenic | 25.0% |
| !!! | TTGTTAGCTAACTTTTTCTA+TGG | - | chr4_1:11785014-11785033 | Msa0535460:intron | 25.0% |
| ! | ATTGATTGAAACATATAGGT+TGG | - | chr4_1:11785228-11785247 | Msa0535460:intron | 25.0% |
| ! | AAATGACATAAAATCAGAAG+TGG | - | chr4_1:11785332-11785351 | Msa0535460:intron | 25.0% |
| ! | CATCAACTACATTTGAATTT+AGG | + | chr4_1:11785502-11785521 | None:intergenic | 25.0% |
| GTTAAGGGAAAATGAGAAAA+GGG | + | chr4_1:11782243-11782262 | None:intergenic | 30.0% | |
| TGTTAAGGGAAAATGAGAAA+AGG | + | chr4_1:11782244-11782263 | None:intergenic | 30.0% | |
| GGAAAAATGAGTGATTGTTA+AGG | + | chr4_1:11782259-11782278 | None:intergenic | 30.0% | |
| AGCCATTAACTTACCAAAAA+TGG | + | chr4_1:11782280-11782299 | None:intergenic | 30.0% | |
| GATTGAAAATCAAAAGGTGA+AGG | + | chr4_1:11782359-11782378 | None:intergenic | 30.0% | |
| !!! | TTTCAATGATTTTGAAGCCA+TGG | + | chr4_1:11782384-11782403 | None:intergenic | 30.0% |
| ACTAACATGGAACAAATGAT+TGG | - | chr4_1:11782480-11782499 | Msa0535460:CDS | 30.0% | |
| AATCCACATCATATAGGATA+AGG | + | chr4_1:11782880-11782899 | None:intergenic | 30.0% | |
| ! | AAGGATCATTTTGCATCTTT+TGG | - | chr4_1:11782922-11782941 | Msa0535460:intron | 30.0% |
| TCAGAATCTATTCATCAACA+TGG | + | chr4_1:11782990-11783009 | None:intergenic | 30.0% | |
| ! | TTTGAAGAACAGATTTTGCA+AGG | + | chr4_1:11783312-11783331 | None:intergenic | 30.0% |
| AACCTTCTTTACAAGAACTA+TGG | - | chr4_1:11783626-11783645 | Msa0535460:intron | 30.0% | |
| TTCCATAGTTCTTGTAAAGA+AGG | + | chr4_1:11783631-11783650 | None:intergenic | 30.0% | |
| ! | TCATTTTCAATTCAGGCAAT+TGG | - | chr4_1:11783772-11783791 | Msa0535460:CDS | 30.0% |
| TTGACTATGATGAATATCAC+AGG | - | chr4_1:11783803-11783822 | Msa0535460:intron | 30.0% | |
| ! | TTTTTGCTTGTAAATGTGAC+CGG | + | chr4_1:11784099-11784118 | None:intergenic | 30.0% |
| ! | TTTTCGCTTATAAATGTGAC+CGG | - | chr4_1:11784207-11784226 | Msa0535460:intron | 30.0% |
| AATTCAATGGCAAATTCTGA+TGG | + | chr4_1:11784594-11784613 | None:intergenic | 30.0% | |
| ATCAGAATTTGCCATTGAAT+TGG | - | chr4_1:11784593-11784612 | Msa0535460:CDS | 30.0% | |
| AAATATTAATCGTCTGATCC+TGG | - | chr4_1:11784872-11784891 | Msa0535460:intron | 30.0% | |
| TAATACCATGCATATTCACT+CGG | + | chr4_1:11784912-11784931 | None:intergenic | 30.0% | |
| TGAGTTGTGACACATTAAAA+AGG | + | chr4_1:11785195-11785214 | None:intergenic | 30.0% | |
| !!! | ATGTCATTTTCCCATAATTC+AGG | + | chr4_1:11785321-11785340 | None:intergenic | 30.0% |
| AAGATATTGAAGGAAGCAAG+AGG | + | chr4_1:11782152-11782171 | None:intergenic | 35.0% | |
| ATCAAAAGGTGAAGGTTTGA+GGG | + | chr4_1:11782351-11782370 | None:intergenic | 35.0% | |
| AATCAAAAGGTGAAGGTTTG+AGG | + | chr4_1:11782352-11782371 | None:intergenic | 35.0% | |
| !! | AGTTGGTTTACTTTTGGAAG+TGG | - | chr4_1:11782748-11782767 | Msa0535460:intron | 35.0% |
| ! | AAGCCTTATCCTATATGATG+TGG | - | chr4_1:11782874-11782893 | Msa0535460:intron | 35.0% |
| GATGCAAAATGATCCTTCAA+GGG | + | chr4_1:11782919-11782938 | None:intergenic | 35.0% | |
| AGATGCAAAATGATCCTTCA+AGG | + | chr4_1:11782920-11782939 | None:intergenic | 35.0% | |
| TTAAGGATTTCGGATCGAAA+TGG | - | chr4_1:11783087-11783106 | Msa0535460:intron | 35.0% | |
| !! | TGATTGCCTTCTTTTTGGTA+AGG | - | chr4_1:11783153-11783172 | Msa0535460:CDS | 35.0% |
| TACAAGCCTTACCAAAAAGA+AGG | + | chr4_1:11783162-11783181 | None:intergenic | 35.0% | |
| ! | AATATAACTGGTGTCAGTGT+CGG | - | chr4_1:11783448-11783467 | Msa0535460:intron | 35.0% |
| CTTCAGATTGAATGTCTATC+TGG | + | chr4_1:11783485-11783504 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | - | chr4_1:11783572-11783591 | Msa0535460:intron | 35.0% | |
| AACTATGGAACAACTATGTC+TGG | - | chr4_1:11783641-11783660 | Msa0535460:intron | 35.0% | |
| AACAACTATGTCTGGTCTAA+GGG | - | chr4_1:11783649-11783668 | Msa0535460:intron | 35.0% | |
| !! | TCTGGTTTCAAGTTCTCATA+TGG | + | chr4_1:11783950-11783969 | None:intergenic | 35.0% |
| GATTTACAATATTCTCCCTC+CGG | - | chr4_1:11784077-11784096 | Msa0535460:CDS | 35.0% | |
| TGTTTATATACTACTCCCTC+CGG | + | chr4_1:11784229-11784248 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCTGTTA+AGG | - | chr4_1:11784338-11784357 | Msa0535460:intron | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | - | chr4_1:11784375-11784394 | Msa0535460:intron | 35.0% | |
| GAAACACTATTCTTGTGGAT+TGG | + | chr4_1:11784426-11784445 | None:intergenic | 35.0% | |
| CATCAGAAACACTATTCTTG+TGG | + | chr4_1:11784431-11784450 | None:intergenic | 35.0% | |
| GAAGATGACATTGAGTTTCT+AGG | - | chr4_1:11784453-11784472 | Msa0535460:intron | 35.0% | |
| ! | ATTGAGTTTCTAGGTTCAAC+AGG | - | chr4_1:11784462-11784481 | Msa0535460:intron | 35.0% |
| !! | TTGGATTAGGTTGAGCAAAA+TGG | + | chr4_1:11784533-11784552 | None:intergenic | 35.0% |
| AAGACTACTAGACTTGGATT+AGG | + | chr4_1:11784546-11784565 | None:intergenic | 35.0% | |
| ! | TCTGATGGCTTGCAAATAAT+TGG | + | chr4_1:11784579-11784598 | None:intergenic | 35.0% |
| AATCTTGAGAGCCAATTCAA+TGG | + | chr4_1:11784607-11784626 | None:intergenic | 35.0% | |
| ! | TGTTCTTTGAGGGTTAATGT+TGG | + | chr4_1:11784631-11784650 | None:intergenic | 35.0% |
| CATGGTATTACGACTATAGT+CGG | - | chr4_1:11784922-11784941 | Msa0535460:intron | 35.0% | |
| ! | GTTTTCCAGCTTGTATATTG+CGG | + | chr4_1:11785079-11785098 | None:intergenic | 35.0% |
| GGTACATCACAAAGAGTTAA+AGG | - | chr4_1:11785249-11785268 | Msa0535460:intron | 35.0% | |
| !! | TAAAGGTGCAGATTTTGCAT+TGG | - | chr4_1:11785266-11785285 | Msa0535460:intron | 35.0% |
| !! | TGGAAAGCATTCACAATCTT+AGG | - | chr4_1:11785286-11785305 | Msa0535460:intron | 35.0% |
| !! | GGAAAGCATTCACAATCTTA+GGG | - | chr4_1:11785287-11785306 | Msa0535460:intron | 35.0% |
| AAGCTTCAAGAGCAATGCAA+AGG | + | chr4_1:11782208-11782227 | None:intergenic | 40.0% | |
| TTTAGCAAAAAAGGCCTCGA+GGG | + | chr4_1:11782617-11782636 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAAAAAGGCCTCG+AGG | + | chr4_1:11782618-11782637 | None:intergenic | 40.0% |
| TTGTGAAGTTTGTGAGTGGA+CGG | + | chr4_1:11782855-11782874 | None:intergenic | 40.0% | |
| GGGACTAATCCACATCATAT+AGG | + | chr4_1:11782886-11782905 | None:intergenic | 40.0% | |
| CCTTCAAGGGAGACAATAAA+GGG | + | chr4_1:11782906-11782925 | None:intergenic | 40.0% | |
| TCCTTCAAGGGAGACAATAA+AGG | + | chr4_1:11782907-11782926 | None:intergenic | 40.0% | |
| GTCGTGTCTGATATCTTTGT+CGG | + | chr4_1:11783381-11783400 | None:intergenic | 40.0% | |
| GAACAACTATGTCTGGTCTA+AGG | - | chr4_1:11783648-11783667 | Msa0535460:intron | 40.0% | |
| GCAAGAGATTCCTCAGAATA+GGG | + | chr4_1:11783973-11783992 | None:intergenic | 40.0% | |
| AGCAAGAGATTCCTCAGAAT+AGG | + | chr4_1:11783974-11783993 | None:intergenic | 40.0% | |
| TTACAAGTTTCCTGTAGGGA+AGG | + | chr4_1:11784000-11784019 | None:intergenic | 40.0% | |
| GTGCTTACAAGTTTCCTGTA+GGG | + | chr4_1:11784004-11784023 | None:intergenic | 40.0% | |
| AGTGCTTACAAGTTTCCTGT+AGG | + | chr4_1:11784005-11784024 | None:intergenic | 40.0% | |
| ! | GTTAAGGCACTAAGTAGACT+TGG | - | chr4_1:11784354-11784373 | Msa0535460:intron | 40.0% |
| TTTGGCAAGACTACTAGACT+TGG | + | chr4_1:11784552-11784571 | None:intergenic | 40.0% | |
| AATCGTCTGATCCTGGTATA+AGG | - | chr4_1:11784879-11784898 | Msa0535460:intron | 40.0% | |
| TCGGTCAAAATCCTTATACC+AGG | + | chr4_1:11784893-11784912 | None:intergenic | 40.0% | |
| TTTGACCGAGTGAATATGCA+TGG | - | chr4_1:11784904-11784923 | Msa0535460:intron | 40.0% | |
| TATACAAGCTGGAAAACGTG+TGG | - | chr4_1:11785082-11785101 | Msa0535460:intron | 40.0% | |
| ATACAAGCTGGAAAACGTGT+GGG | - | chr4_1:11785083-11785102 | Msa0535460:intron | 40.0% | |
| TGACTGATGTTAACTTCCCA+GGG | + | chr4_1:11785362-11785381 | None:intergenic | 40.0% | |
| AGGAAGCAAGAGGAAGAAGA+GGG | + | chr4_1:11782142-11782161 | None:intergenic | 45.0% | |
| AAGGAAGCAAGAGGAAGAAG+AGG | + | chr4_1:11782143-11782162 | None:intergenic | 45.0% | |
| GGGACAGAGTTCAAATCCAT+CGG | + | chr4_1:11782597-11782616 | None:intergenic | 45.0% | |
| ! | GGCTTTGTGAAGTTTGTGAG+TGG | + | chr4_1:11782859-11782878 | None:intergenic | 45.0% |
| CCCTTTATTGTCTCCCTTGA+AGG | - | chr4_1:11782903-11782922 | Msa0535460:intron | 45.0% | |
| ACTTTGTATCCCCTTAGAGC+TGG | - | chr4_1:11783286-11783305 | Msa0535460:CDS | 45.0% | |
| !! | TTTTGCAAGGCCAGCTCTAA+GGG | + | chr4_1:11783299-11783318 | None:intergenic | 45.0% |
| ! | ATTTTGCAAGGCCAGCTCTA+AGG | + | chr4_1:11783300-11783319 | None:intergenic | 45.0% |
| TGAAACCAGACCCTATTCTG+AGG | - | chr4_1:11783960-11783979 | Msa0535460:intron | 45.0% | |
| AGATTCCTCAGAATAGGGTC+TGG | + | chr4_1:11783968-11783987 | None:intergenic | 45.0% | |
| TGCTTGTAAATGTGACCGGA+GGG | + | chr4_1:11784095-11784114 | None:intergenic | 45.0% | |
| TTGCTTGTAAATGTGACCGG+AGG | + | chr4_1:11784096-11784115 | None:intergenic | 45.0% | |
| TCGCTTATAAATGTGACCGG+AGG | - | chr4_1:11784210-11784229 | Msa0535460:intron | 45.0% | |
| CGCTTATAAATGTGACCGGA+GGG | - | chr4_1:11784211-11784230 | Msa0535460:intron | 45.0% | |
| ATCGTCTGATCCTCGTGTAA+GGG | - | chr4_1:11784759-11784778 | Msa0535460:intron | 45.0% | |
| AGTGTCCGCAATATACAAGC+TGG | - | chr4_1:11785071-11785090 | Msa0535460:intron | 45.0% | |
| TGTGGGACTTGACACAGTAT+TGG | - | chr4_1:11785100-11785119 | Msa0535460:intron | 45.0% | |
| GGAAGCTGTGCCTGAATTAT+GGG | - | chr4_1:11785308-11785327 | Msa0535460:intron | 45.0% | |
| AAATCAGAAGTGGCATACCC+TGG | - | chr4_1:11785342-11785361 | Msa0535460:intron | 45.0% | |
| AATCAGAAGTGGCATACCCT+GGG | - | chr4_1:11785343-11785362 | Msa0535460:intron | 45.0% | |
| GTGACTGATGTTAACTTCCC+AGG | + | chr4_1:11785363-11785382 | None:intergenic | 45.0% | |
| GAAGCAAGAGGAAGAAGAGG+GGG | + | chr4_1:11782140-11782159 | None:intergenic | 50.0% | |
| GGAAGCAAGAGGAAGAAGAG+GGG | + | chr4_1:11782141-11782160 | None:intergenic | 50.0% | |
| GATTTGAACTCTGTCCCTCG+AGG | - | chr4_1:11782600-11782619 | Msa0535460:intron | 50.0% | |
| ATGGCGTACGAGGATCGATT+CGG | - | chr4_1:11783106-11783125 | Msa0535460:CDS | 50.0% | |
| !! | TTTGCAAGGCCAGCTCTAAG+GGG | + | chr4_1:11783298-11783317 | None:intergenic | 50.0% |
| GATCGTCTGATCCTCGTGTA+AGG | - | chr4_1:11784758-11784777 | Msa0535460:intron | 50.0% | |
| GGGAAGCTGTGCCTGAATTA+TGG | - | chr4_1:11785307-11785326 | Msa0535460:intron | 50.0% | |
| TCGGATCGAAATGGCGTACG+AGG | - | chr4_1:11783096-11783115 | Msa0535460:CDS | 55.0% | |
| TCTTGCTGAGCCTTCCCTAC+AGG | - | chr4_1:11783987-11784006 | Msa0535460:intron | 55.0% | |
| TCGGTCAGAACCCTTACACG+AGG | + | chr4_1:11784772-11784791 | None:intergenic | 55.0% | |
| GCAAGAGGAAGAAGAGGGGG+AGG | + | chr4_1:11782137-11782156 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11782131 | 11785614 | 11782131 | ID=Msa0535460;Name=Msa0535460 |
| chr4_1 | mRNA | 11782131 | 11785614 | 11782131 | ID=Msa0535460-mRNA-1;Parent=Msa0535460;Name=Msa0535460-mRNA-1;_AED=0.27;_eAED=0.27;_QI=169|1|1|1|0.87|0.77|9|225|296 |
| chr4_1 | exon | 11782131 | 11782499 | 11782131 | ID=Msa0535460-mRNA-1:exon:3786;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11782624 | 11782689 | 11782624 | ID=Msa0535460-mRNA-1:exon:3785;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11783095 | 11783421 | 11783095 | ID=Msa0535460-mRNA-1:exon:3784;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11783730 | 11783817 | 11783730 | ID=Msa0535460-mRNA-1:exon:3783;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11783921 | 11783958 | 11783921 | ID=Msa0535460-mRNA-1:exon:3782;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11784075 | 11784172 | 11784075 | ID=Msa0535460-mRNA-1:exon:3781;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11784405 | 11784470 | 11784405 | ID=Msa0535460-mRNA-1:exon:3780;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11784576 | 11784653 | 11784576 | ID=Msa0535460-mRNA-1:exon:3779;Parent=Msa0535460-mRNA-1 |
| chr4_1 | exon | 11785460 | 11785614 | 11785460 | ID=Msa0535460-mRNA-1:exon:3778;Parent=Msa0535460-mRNA-1 |
| chr4_1 | five_prime_UTR | 11785460 | 11785614 | 11785460 | ID=Msa0535460-mRNA-1:five_prime_utr;Parent=Msa0535460-mRNA-1 |
| chr4_1 | five_prime_UTR | 11784640 | 11784653 | 11784640 | ID=Msa0535460-mRNA-1:five_prime_utr;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11784576 | 11784639 | 11784576 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11784405 | 11784470 | 11784405 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11784075 | 11784172 | 11784075 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11783921 | 11783958 | 11783921 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11783730 | 11783817 | 11783730 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11783095 | 11783421 | 11783095 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11782624 | 11782689 | 11782624 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | CDS | 11782356 | 11782499 | 11782356 | ID=Msa0535460-mRNA-1:cds;Parent=Msa0535460-mRNA-1 |
| chr4_1 | three_prime_UTR | 11782131 | 11782355 | 11782131 | ID=Msa0535460-mRNA-1:three_prime_utr;Parent=Msa0535460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
