Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631860 | XP_013455015.1 | 100.000 | 296 | 0 | 0 | 1 | 296 | 1 | 296 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631860 | sp|Q09893|YAI5_SCHPO | 37.984 | 129 | 76 | 3 | 19 | 144 | 8 | 135 | 7.43e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631860 | A0A072UHY2 | 100.000 | 296 | 0 | 0 | 1 | 296 | 1 | 296 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631860 | Msa0670990 | 0.935491 | 7.806369e-97 | -8.615850e-47 |
| Msa0535460 | Msa0631860 | 0.885503 | 7.689320e-72 | -8.615850e-47 |
| Msa0591930 | Msa0631860 | 0.889158 | 3.111942e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631860 | MtrunA17_Chr4g0009921 | 100.000 | 296 | 0 | 0 | 1 | 296 | 1 | 296 | 0.0 | 610 |
| Msa0631860 | MtrunA17_Chr7g0238911 | 85.479 | 303 | 35 | 4 | 1 | 296 | 1 | 301 | 0.0 | 522 |
| Msa0631860 | MtrunA17_Chr4g0009961 | 74.150 | 294 | 67 | 3 | 11 | 296 | 8 | 300 | 1.03e-158 | 444 |
| Msa0631860 | MtrunA17_Chr2g0328451 | 56.333 | 300 | 118 | 5 | 1 | 296 | 1 | 291 | 6.45e-114 | 330 |
| Msa0631860 | MtrunA17_Chr4g0031841 | 56.475 | 278 | 105 | 3 | 9 | 286 | 8 | 269 | 3.33e-111 | 323 |
| Msa0631860 | MtrunA17_Chr1g0193721 | 51.111 | 270 | 87 | 2 | 9 | 278 | 4 | 228 | 4.23e-95 | 281 |
| Msa0631860 | MtrunA17_Chr1g0205581 | 45.489 | 266 | 104 | 2 | 14 | 277 | 8 | 234 | 8.13e-78 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631860 | AT5G02230.2 | 66.667 | 300 | 76 | 5 | 1 | 296 | 1 | 280 | 1.76e-133 | 380 |
| Msa0631860 | AT5G02230.1 | 66.667 | 300 | 76 | 5 | 1 | 296 | 1 | 280 | 1.76e-133 | 380 |
| Msa0631860 | AT5G02230.3 | 66.667 | 300 | 76 | 5 | 1 | 296 | 38 | 317 | 5.21e-133 | 380 |
| Msa0631860 | AT5G59480.4 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.66e-123 | 354 |
| Msa0631860 | AT5G59480.5 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.66e-123 | 354 |
| Msa0631860 | AT5G59480.3 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.66e-123 | 354 |
| Msa0631860 | AT5G59480.1 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.66e-123 | 354 |
| Msa0631860 | AT5G59480.2 | 60.791 | 278 | 91 | 4 | 1 | 278 | 1 | 260 | 1.92e-121 | 349 |
| Msa0631860 | AT5G59490.1 | 56.180 | 267 | 84 | 3 | 15 | 281 | 10 | 243 | 8.05e-98 | 289 |
| Msa0631860 | AT3G62040.1 | 53.390 | 236 | 65 | 3 | 46 | 280 | 1 | 192 | 6.44e-84 | 251 |
| Msa0631860 | AT2G32150.1 | 46.591 | 264 | 103 | 3 | 14 | 277 | 4 | 229 | 2.19e-83 | 252 |
| Msa0631860 | AT5G59490.2 | 55.508 | 236 | 72 | 3 | 15 | 250 | 10 | 212 | 6.51e-80 | 241 |
| Msa0631860 | AT2G32150.2 | 46.835 | 237 | 88 | 3 | 14 | 250 | 4 | 202 | 1.46e-70 | 218 |
| Msa0631860 | AT2G32150.3 | 45.161 | 217 | 81 | 2 | 14 | 230 | 4 | 182 | 1.26e-61 | 194 |
Find 66 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACTACATTTGAATTT+AGG | 0.088582 | 4_3:+15274837 | None:intergenic |
| TGGAAAGCATTCACAATCTT+AGG | 0.188813 | 4_3:-15275050 | Msa0631860:CDS |
| ATTATTGATCTTAGATTATA+TGG | 0.217322 | 4_3:-15276646 | Msa0631860:intron |
| ATCAACTACATTTGAATTTA+GGG | 0.218826 | 4_3:+15274838 | None:intergenic |
| GGGAAGCTGTGCCTGAATTA+TGG | 0.237248 | 4_3:-15275029 | Msa0631860:CDS |
| TCTGTTCTTCAAAATATTAA+AGG | 0.254928 | 4_3:-15276898 | Msa0631860:intron |
| TCTGATGGCTTGCAAATAAT+TGG | 0.259115 | 4_3:+15275640 | None:intergenic |
| GAACAACTATGTCTGGTCTA+AGG | 0.279798 | 4_3:-15276557 | Msa0631860:CDS |
| TTATTAATGAACAATATTAA+AGG | 0.284764 | 4_3:+15274925 | None:intergenic |
| GGTACATCACAAAGAGTTAA+AGG | 0.339752 | 4_3:-15275087 | Msa0631860:CDS |
| ATCAGAATTTGCCATTGAAT+TGG | 0.342165 | 4_3:-15275623 | Msa0631860:CDS |
| TTGGATTAGGTTGAGCAAAA+TGG | 0.343856 | 4_3:+15275686 | None:intergenic |
| TATTAATGAACAATATTAAA+GGG | 0.359324 | 4_3:+15274926 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4_3:-15275841 | Msa0631860:CDS |
| GGAAGCTGTGCCTGAATTAT+GGG | 0.383288 | 4_3:-15275028 | Msa0631860:CDS |
| GATTATATGGTTGAGAAGCT+TGG | 0.394134 | 4_3:-15276633 | Msa0631860:CDS |
| AACCTCCTTTACAAGAACTA+TGG | 0.408417 | 4_3:-15276579 | Msa0631860:CDS |
| GAAACACTATTCTTGTGGAT+TGG | 0.410797 | 4_3:+15275793 | None:intergenic |
| GAAGATGACATTGAATTTGT+AGG | 0.426054 | 4_3:-15275763 | Msa0631860:CDS |
| GCAACAGATTCCTCAGAATA+GGG | 0.431482 | 4_3:+15276235 | None:intergenic |
| AACTATGGAACAACTATGTC+TGG | 0.434621 | 4_3:-15276564 | Msa0631860:CDS |
| AAGACTACTAGACTTGGATT+AGG | 0.445717 | 4_3:+15275673 | None:intergenic |
| GTTAAGGGAAAATGAGAAAA+GGG | 0.447443 | 4_3:+15277958 | None:intergenic |
| TCTGGTTTCAAGTTCTCATA+AGG | 0.450135 | 4_3:+15276258 | None:intergenic |
| AGACAAAGTTCATGCTGTTA+AGG | 0.455183 | 4_3:-15275878 | Msa0631860:CDS |
| GGAAAGCATTCACAATCTTA+GGG | 0.460709 | 4_3:-15275049 | Msa0631860:CDS |
| TGTTAAGGGAAAATGAGAAA+AGG | 0.467410 | 4_3:+15277957 | None:intergenic |
| AGCAACAGATTCCTCAGAAT+AGG | 0.476120 | 4_3:+15276234 | None:intergenic |
| ATGGCGTACGAGGATCGATT+CGG | 0.486437 | 4_3:-15277097 | Msa0631860:CDS |
| TTAAGGATTTCGGATCGAAA+TGG | 0.489486 | 4_3:-15277116 | Msa0631860:intron |
| AAGGAAGCAAGAGGAAGAAG+AGG | 0.492030 | 4_3:+15278058 | None:intergenic |
| TGTTGCTGAGCCTTCCCTAC+AGG | 0.493051 | 4_3:-15276218 | Msa0631860:CDS |
| GTGACTGATGTTAACTTCCC+AGG | 0.494643 | 4_3:+15274976 | None:intergenic |
| AAGCAATACTAAGATATTGA+AGG | 0.503644 | 4_3:+15278039 | None:intergenic |
| GAAGCAAGAGGAAGAAGAGG+GGG | 0.507843 | 4_3:+15278061 | None:intergenic |
| AGATTCCTCAGAATAGGGTC+TGG | 0.510311 | 4_3:+15276240 | None:intergenic |
| AGGAAGCAAGAGGAAGAAGA+GGG | 0.510485 | 4_3:+15278059 | None:intergenic |
| GTTAAGGCACTAAGTAGACT+TGG | 0.514037 | 4_3:-15275862 | Msa0631860:CDS |
| CATCAGAAACACTATTCTTG+TGG | 0.516868 | 4_3:+15275788 | None:intergenic |
| AATCTTGAGAGCCAATTCAA+TGG | 0.517511 | 4_3:+15275612 | None:intergenic |
| TTGTTCCATAGTTCTTGTAA+AGG | 0.520994 | 4_3:+15276574 | None:intergenic |
| ACTTTGTATCCCCTTAGAGC+TGG | 0.529127 | 4_3:-15276931 | Msa0631860:CDS |
| AAATCAGAAGTGGCTTACCC+TGG | 0.533601 | 4_3:-15274994 | Msa0631860:CDS |
| TTCCATAGTTCTTGTAAAGG+AGG | 0.535918 | 4_3:+15276577 | None:intergenic |
| AGTGCTTACAAGTTTCCTGT+AGG | 0.536657 | 4_3:+15276203 | None:intergenic |
| TAAAGGTGCAGATTATGCAT+TGG | 0.537919 | 4_3:-15275070 | Msa0631860:CDS |
| AACAACTATGTCTGGTCTAA+GGG | 0.538656 | 4_3:-15276556 | Msa0631860:intron |
| GGAAGCAAGAGGAAGAAGAG+GGG | 0.538727 | 4_3:+15278060 | None:intergenic |
| GTGCTTACAAGTTTCCTGTA+GGG | 0.557416 | 4_3:+15276204 | None:intergenic |
| AATTCAATGGCAAATTCTGA+TGG | 0.561564 | 4_3:+15275625 | None:intergenic |
| AATCAGAAGTGGCTTACCCT+GGG | 0.569154 | 4_3:-15274993 | Msa0631860:CDS |
| AGTGTCCGCAATATACAAGC+TGG | 0.570089 | 4_3:-15275265 | Msa0631860:CDS |
| TTTGGCAAGACTACTAGACT+TGG | 0.570754 | 4_3:+15275667 | None:intergenic |
| TTACAAGTTTCCTGTAGGGA+AGG | 0.575923 | 4_3:+15276208 | None:intergenic |
| TGTTCTTTGAGGGTTAATGT+TGG | 0.580694 | 4_3:+15275588 | None:intergenic |
| TGACTGATGTTAACTTCCCA+GGG | 0.584286 | 4_3:+15274977 | None:intergenic |
| TGTGGGACTTGACACAGTAT+TGG | 0.599786 | 4_3:-15275236 | Msa0631860:intron |
| TCGGATCGAAATGGCGTACG+AGG | 0.602969 | 4_3:-15277107 | Msa0631860:exon |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 4_3:-15276402 | Msa0631860:intron |
| AAATGACATAAAATCAGAAG+TGG | 0.612856 | 4_3:-15275004 | Msa0631860:CDS |
| TATACAAGCTGGAAAACGTG+TGG | 0.625983 | 4_3:-15275254 | Msa0631860:CDS |
| AAGCTTCAAGAGCAATGCAA+AGG | 0.631578 | 4_3:+15277993 | None:intergenic |
| AAGATATTGAAGGAAGCAAG+AGG | 0.638493 | 4_3:+15278049 | None:intergenic |
| ATACAAGCTGGAAAACGTGT+GGG | 0.658378 | 4_3:-15275253 | Msa0631860:CDS |
| TGAAACCAGACCCTATTCTG+AGG | 0.671934 | 4_3:-15276245 | Msa0631860:CDS |
| TTTGCAAGGCCAGCTCTAAG+GGG | 0.679893 | 4_3:+15276922 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTATTATAAAA+TGG | - | chr4_3:15276497-15276516 | Msa0631860:intron | 0.0% |
| !! | CTTTATTAATTATAAATCTT+TGG | + | chr4_3:15275992-15276011 | None:intergenic | 10.0% |
| !! | TATTCTCTTAAATTTATTAT+TGG | + | chr4_3:15276066-15276085 | None:intergenic | 10.0% |
| !! | TATTAATGAACAATATTAAA+GGG | + | chr4_3:15277914-15277933 | None:intergenic | 10.0% |
| !! | TTATTAATGAACAATATTAA+AGG | + | chr4_3:15277915-15277934 | None:intergenic | 10.0% |
| !! | AACATAAATAAATTTGTGTA+AGG | + | chr4_3:15275461-15275480 | None:intergenic | 15.0% |
| !! | ATTATTGATCTTAGATTATA+TGG | - | chr4_3:15276191-15276210 | Msa0631860:intron | 15.0% |
| !!! | TTTTATTTCATTTTCAATTC+AGG | - | chr4_3:15276397-15276416 | Msa0631860:intron | 15.0% |
| !!! | ATATTTTAACATCAGTAAAT+TGG | + | chr4_3:15277358-15277377 | None:intergenic | 15.0% |
| !! | ATATGTTTCAATCAATAAAT+AGG | + | chr4_3:15277725-15277744 | None:intergenic | 15.0% |
| !!! | ATTTATTGATTGAAACATAT+AGG | - | chr4_3:15277725-15277744 | Msa0631860:intron | 15.0% |
| !!! | AATGAATAAATTCTTCTTTT+TGG | - | chr4_3:15278070-15278089 | Msa0631860:five_prime_UTR | 15.0% |
| !! | CTTATTAAATTTCACTAACA+TGG | - | chr4_3:15275106-15275125 | Msa0631860:intron | 20.0% |
| !! | AACTCAGAGTTAAATATAAT+GGG | + | chr4_3:15275326-15275345 | None:intergenic | 20.0% |
| !! | AAACTCAGAGTTAAATATAA+TGG | + | chr4_3:15275327-15275346 | None:intergenic | 20.0% |
| !!! | TGTTGAATTTTTAAGGATTT+CGG | - | chr4_3:15275711-15275730 | Msa0631860:CDS | 20.0% |
| !! | TCTGTTCTTCAAAATATTAA+AGG | - | chr4_3:15275939-15275958 | Msa0631860:intron | 20.0% |
| !!! | ATATTTTACAGGAAATGATT+AGG | + | chr4_3:15276329-15276348 | None:intergenic | 20.0% |
| !!! | GGTATTGATTGTAAATATAA+TGG | - | chr4_3:15276373-15276392 | Msa0631860:intron | 20.0% |
| !!! | AAGCAAAAAAACAACTTTTT+AGG | - | chr4_3:15276735-15276754 | Msa0631860:intron | 20.0% |
| !! | TATTGAATAACTAATGTATC+TGG | + | chr4_3:15276798-15276817 | None:intergenic | 20.0% |
| !! | AATTAGATCACATTAAAGAA+TGG | + | chr4_3:15277469-15277488 | None:intergenic | 20.0% |
| !!! | TAATTTTCAGTTGTTTTTTG+AGG | - | chr4_3:15277547-15277566 | Msa0631860:intron | 20.0% |
| !! | ATCAACTACATTTGAATTTA+GGG | + | chr4_3:15278002-15278021 | None:intergenic | 20.0% |
| ! | AAGCAATACTAAGATATTGA+AGG | + | chr4_3:15274801-15274820 | None:intergenic | 25.0% |
| ! | GAAAAATGAGTGATTGTTAA+GGG | + | chr4_3:15274897-15274916 | None:intergenic | 25.0% |
| !!! | ATCACTCATTTTTCCATTTT+TGG | - | chr4_3:15274903-15274922 | Msa0631860:three_prime_UTR | 25.0% |
| !!! | TTCCATTTTTGGTAAGTTAA+TGG | - | chr4_3:15274914-15274933 | Msa0631860:three_prime_UTR | 25.0% |
| ! | AACCATTAACTTACCAAAAA+TGG | + | chr4_3:15274919-15274938 | None:intergenic | 25.0% |
| ! | ATGGTTGATTGAAAATCAAA+AGG | + | chr4_3:15275004-15275023 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTCAATCAACCA+TGG | - | chr4_3:15275003-15275022 | Msa0631860:CDS | 25.0% |
| ! | TACTAATCATAGGTTAATGT+TGG | + | chr4_3:15275054-15275073 | None:intergenic | 25.0% |
| ! | ATATTCATGGTACTAATCAT+AGG | + | chr4_3:15275064-15275083 | None:intergenic | 25.0% |
| ! | TATGATTAGTACCATGAATA+TGG | - | chr4_3:15275063-15275082 | Msa0631860:CDS | 25.0% |
| ! | AAATCTCAAAACCATATTCA+TGG | + | chr4_3:15275077-15275096 | None:intergenic | 25.0% |
| ! | ATTAAGAATCACCATTTCTT+TGG | - | chr4_3:15275143-15275162 | Msa0631860:intron | 25.0% |
| ! | GTATAGAATAACCAAAGAAA+TGG | + | chr4_3:15275157-15275176 | None:intergenic | 25.0% |
| !!! | GTGCATTTTTTTAGCAAAAA+AGG | + | chr4_3:15275265-15275284 | None:intergenic | 25.0% |
| ! | ATTGATCGTTTGATAAACTT+TGG | + | chr4_3:15275355-15275374 | None:intergenic | 25.0% |
| ! | TCAATTCATCTTTCAAAAGT+TGG | - | chr4_3:15275370-15275389 | Msa0631860:intron | 25.0% |
| !!! | TTCAAAAGTTGGTTTACTTT+TGG | - | chr4_3:15275381-15275400 | Msa0631860:intron | 25.0% |
| !! | TGTTCTGTGTTGAATTTTTA+AGG | - | chr4_3:15275704-15275723 | Msa0631860:CDS | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | - | chr4_3:15275782-15275801 | Msa0631860:CDS | 25.0% |
| !!! | ATGTTATATGTTGTTTCTTG+AGG | - | chr4_3:15276139-15276158 | Msa0631860:intron | 25.0% |
| ! | AGGAAATGATTAGGAATTTA+AGG | + | chr4_3:15276320-15276339 | None:intergenic | 25.0% |
| !! | ACAATGGAAACATATTTTAC+AGG | + | chr4_3:15276340-15276359 | None:intergenic | 25.0% |
| ! | TCCATTGTTAAATTGTGAAA+AGG | - | chr4_3:15276352-15276371 | Msa0631860:intron | 25.0% |
| !! | ACCTTTTCACAATTTAACAA+TGG | + | chr4_3:15276356-15276375 | None:intergenic | 25.0% |
| ! | AATAACAGTTTGAAAGTGAA+GGG | + | chr4_3:15276482-15276501 | None:intergenic | 25.0% |
| ! | AAATAACAGTTTGAAAGTGA+AGG | + | chr4_3:15276483-15276502 | None:intergenic | 25.0% |
| !!! | ATTATTTGCAGTTTTGTTCA+TGG | - | chr4_3:15276549-15276568 | Msa0631860:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr4_3:15276724-15276743 | None:intergenic | 25.0% |
| !!! | TTGCAAATAATTGGTGTTTT+TGG | + | chr4_3:15277191-15277210 | None:intergenic | 25.0% |
| !! | TTTTACTTACTGTTCTTTGA+GGG | + | chr4_3:15277262-15277281 | None:intergenic | 25.0% |
| !! | ATTTTACTTACTGTTCTTTG+AGG | + | chr4_3:15277263-15277282 | None:intergenic | 25.0% |
| ! | ATGTTAAAATATGAATCGTC+TGG | - | chr4_3:15277366-15277385 | Msa0631860:intron | 25.0% |
| !!! | TTGTTTGCTAACTTTTTCTA+TGG | - | chr4_3:15277515-15277534 | Msa0631860:intron | 25.0% |
| ! | ATTGATTGAAACATATAGGT+TGG | - | chr4_3:15277729-15277748 | Msa0631860:intron | 25.0% |
| ! | AAATGACATAAAATCAGAAG+TGG | - | chr4_3:15277833-15277852 | Msa0631860:intron | 25.0% |
| !! | ACAAAAAAAGTTAAGAGCAT+AGG | - | chr4_3:15277969-15277988 | Msa0631860:five_prime_UTR | 25.0% |
| !! | CAAAAAAAGTTAAGAGCATA+GGG | - | chr4_3:15277970-15277989 | Msa0631860:five_prime_UTR | 25.0% |
| ! | CATCAACTACATTTGAATTT+AGG | + | chr4_3:15278003-15278022 | None:intergenic | 25.0% |
| GTTAAGGGAAAATGAGAAAA+GGG | + | chr4_3:15274882-15274901 | None:intergenic | 30.0% | |
| TGTTAAGGGAAAATGAGAAA+AGG | + | chr4_3:15274883-15274902 | None:intergenic | 30.0% | |
| GGAAAAATGAGTGATTGTTA+AGG | + | chr4_3:15274898-15274917 | None:intergenic | 30.0% | |
| GATTGAAAATCAAAAGGTGA+AGG | + | chr4_3:15274998-15275017 | None:intergenic | 30.0% | |
| !!! | TTTCAATGATTTTGAAGCCA+TGG | + | chr4_3:15275023-15275042 | None:intergenic | 30.0% |
| ACTAACATGGAACAAATGAT+TGG | - | chr4_3:15275119-15275138 | Msa0631860:intron | 30.0% | |
| ! | TATTTTACAACGATATCCGA+TGG | - | chr4_3:15275217-15275236 | Msa0631860:intron | 30.0% |
| AATCCACATCATATAGGATA+AGG | + | chr4_3:15275514-15275533 | None:intergenic | 30.0% | |
| ! | AAGGATCATTTTGCATCTTT+TGG | - | chr4_3:15275556-15275575 | Msa0631860:intron | 30.0% |
| TCAGAATCTATTCATCAACA+TGG | + | chr4_3:15275624-15275643 | None:intergenic | 30.0% | |
| ! | TTTGAAGAACAGATTTTGCA+AGG | + | chr4_3:15275932-15275951 | None:intergenic | 30.0% |
| TTGTTCCATAGTTCTTGTAA+AGG | + | chr4_3:15276266-15276285 | None:intergenic | 30.0% | |
| ! | TCATTTTCAATTCAGGCAAT+TGG | - | chr4_3:15276404-15276423 | Msa0631860:CDS | 30.0% |
| TTGACTATGATGAATATCAC+AGG | - | chr4_3:15276435-15276454 | Msa0631860:intron | 30.0% | |
| GAAGATGACATTGAATTTGT+AGG | - | chr4_3:15277074-15277093 | Msa0631860:CDS | 30.0% | |
| AATTCAATGGCAAATTCTGA+TGG | + | chr4_3:15277215-15277234 | None:intergenic | 30.0% | |
| ATCAGAATTTGCCATTGAAT+TGG | - | chr4_3:15277214-15277233 | Msa0631860:intron | 30.0% | |
| TGAGTTGTGACACATTAAAA+AGG | + | chr4_3:15277696-15277715 | None:intergenic | 30.0% | |
| !!! | ATGTCATTTTCCCATAATTC+AGG | + | chr4_3:15277822-15277841 | None:intergenic | 30.0% |
| AAGATATTGAAGGAAGCAAG+AGG | + | chr4_3:15274791-15274810 | None:intergenic | 35.0% | |
| ATCAAAAGGTGAAGGTTTGA+GGG | + | chr4_3:15274990-15275009 | None:intergenic | 35.0% | |
| AATCAAAAGGTGAAGGTTTG+AGG | + | chr4_3:15274991-15275010 | None:intergenic | 35.0% | |
| !! | AGTTGGTTTACTTTTGGAAG+TGG | - | chr4_3:15275387-15275406 | Msa0631860:intron | 35.0% |
| ! | AAGCCTTATCCTATATGATG+TGG | - | chr4_3:15275508-15275527 | Msa0631860:intron | 35.0% |
| GATGCAAAATGATCCTTCAA+GGG | + | chr4_3:15275553-15275572 | None:intergenic | 35.0% | |
| AGATGCAAAATGATCCTTCA+AGG | + | chr4_3:15275554-15275573 | None:intergenic | 35.0% | |
| TTAAGGATTTCGGATCGAAA+TGG | - | chr4_3:15275721-15275740 | Msa0631860:CDS | 35.0% | |
| !! | TGATTGCCTTCTTTTTGGTA+AGG | - | chr4_3:15275787-15275806 | Msa0631860:CDS | 35.0% |
| TACAAGCCTTACCAAAAAGA+AGG | + | chr4_3:15275796-15275815 | None:intergenic | 35.0% | |
| CTGCATAACATTAACTCTCA+TGG | + | chr4_3:15275875-15275894 | None:intergenic | 35.0% | |
| ATTAACATGTGTCAGTGTGT+CGG | - | chr4_3:15276085-15276104 | Msa0631860:intron | 35.0% | |
| CTTTAGATTGAATGTCTCTC+TGG | + | chr4_3:15276114-15276133 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | - | chr4_3:15276204-15276223 | Msa0631860:intron | 35.0% | |
| AACCTCCTTTACAAGAACTA+TGG | - | chr4_3:15276258-15276277 | Msa0631860:CDS | 35.0% | |
| TTCCATAGTTCTTGTAAAGG+AGG | + | chr4_3:15276263-15276282 | None:intergenic | 35.0% | |
| AACTATGGAACAACTATGTC+TGG | - | chr4_3:15276273-15276292 | Msa0631860:CDS | 35.0% | |
| AACAACTATGTCTGGTCTAA+GGG | - | chr4_3:15276281-15276300 | Msa0631860:intron | 35.0% | |
| !! | TCTGGTTTCAAGTTCTCATA+AGG | + | chr4_3:15276582-15276601 | None:intergenic | 35.0% |
| TGTTTATTTACTACTCCCTC+AGG | + | chr4_3:15276855-15276874 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCTGTTA+AGG | - | chr4_3:15276959-15276978 | Msa0631860:intron | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | - | chr4_3:15276996-15277015 | Msa0631860:intron | 35.0% | |
| GAAACACTATTCTTGTGGAT+TGG | + | chr4_3:15277047-15277066 | None:intergenic | 35.0% | |
| CATCAGAAACACTATTCTTG+TGG | + | chr4_3:15277052-15277071 | None:intergenic | 35.0% | |
| !! | TTGGATTAGGTTGAGCAAAA+TGG | + | chr4_3:15277154-15277173 | None:intergenic | 35.0% |
| AAGACTACTAGACTTGGATT+AGG | + | chr4_3:15277167-15277186 | None:intergenic | 35.0% | |
| ! | TCTGATGGCTTGCAAATAAT+TGG | + | chr4_3:15277200-15277219 | None:intergenic | 35.0% |
| AATCTTGAGAGCCAATTCAA+TGG | + | chr4_3:15277228-15277247 | None:intergenic | 35.0% | |
| ! | TGTTCTTTGAGGGTTAATGT+TGG | + | chr4_3:15277252-15277271 | None:intergenic | 35.0% |
| CGTGATATTACGACTATAGT+CGG | - | chr4_3:15277422-15277441 | Msa0631860:intron | 35.0% | |
| ! | GTTTTCCAGCTTGTATATTG+CGG | + | chr4_3:15277580-15277599 | None:intergenic | 35.0% |
| GGTACATCACAAAGAGTTAA+AGG | - | chr4_3:15277750-15277769 | Msa0631860:intron | 35.0% | |
| ! | TAAAGGTGCAGATTATGCAT+TGG | - | chr4_3:15277767-15277786 | Msa0631860:intron | 35.0% |
| !! | TGGAAAGCATTCACAATCTT+AGG | - | chr4_3:15277787-15277806 | Msa0631860:intron | 35.0% |
| !! | GGAAAGCATTCACAATCTTA+GGG | - | chr4_3:15277788-15277807 | Msa0631860:intron | 35.0% |
| AAGCTTCAAGAGCAATGCAA+AGG | + | chr4_3:15274847-15274866 | None:intergenic | 40.0% | |
| TTTAGCAAAAAAGGCCTCGA+GGG | + | chr4_3:15275256-15275275 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAAAAAGGCCTCG+AGG | + | chr4_3:15275257-15275276 | None:intergenic | 40.0% |
| TTGTGAAGTTTGTGAGTGGA+CGG | + | chr4_3:15275489-15275508 | None:intergenic | 40.0% | |
| GGGACTAATCCACATCATAT+AGG | + | chr4_3:15275520-15275539 | None:intergenic | 40.0% | |
| CCTTCAAGGGAGACAATAAA+GGG | + | chr4_3:15275540-15275559 | None:intergenic | 40.0% | |
| TCCTTCAAGGGAGACAATAA+AGG | + | chr4_3:15275541-15275560 | None:intergenic | 40.0% | |
| GAACAACTATGTCTGGTCTA+AGG | - | chr4_3:15276280-15276299 | Msa0631860:CDS | 40.0% | |
| GCAACAGATTCCTCAGAATA+GGG | + | chr4_3:15276605-15276624 | None:intergenic | 40.0% | |
| AGCAACAGATTCCTCAGAAT+AGG | + | chr4_3:15276606-15276625 | None:intergenic | 40.0% | |
| TTACAAGTTTCCTGTAGGGA+AGG | + | chr4_3:15276632-15276651 | None:intergenic | 40.0% | |
| GTGCTTACAAGTTTCCTGTA+GGG | + | chr4_3:15276636-15276655 | None:intergenic | 40.0% | |
| AGTGCTTACAAGTTTCCTGT+AGG | + | chr4_3:15276637-15276656 | None:intergenic | 40.0% | |
| GATTTACAACATTCTCCCTC+CGG | - | chr4_3:15276702-15276721 | Msa0631860:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr4_3:15276720-15276739 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr4_3:15276721-15276740 | None:intergenic | 40.0% | |
| TCGCATATAAATGTGACCTG+AGG | - | chr4_3:15276836-15276855 | Msa0631860:intron | 40.0% | |
| CGCATATAAATGTGACCTGA+GGG | - | chr4_3:15276837-15276856 | Msa0631860:intron | 40.0% | |
| ! | GTTAAGGCACTAAGTAGACT+TGG | - | chr4_3:15276975-15276994 | Msa0631860:intron | 40.0% |
| TTTGGCAAGACTACTAGACT+TGG | + | chr4_3:15277173-15277192 | None:intergenic | 40.0% | |
| TAAGTCAGAACCCTTATACG+AGG | + | chr4_3:15277393-15277412 | None:intergenic | 40.0% | |
| TATACAAGCTGGAAAACGTG+TGG | - | chr4_3:15277583-15277602 | Msa0631860:intron | 40.0% | |
| ATACAAGCTGGAAAACGTGT+GGG | - | chr4_3:15277584-15277603 | Msa0631860:intron | 40.0% | |
| TGACTGATGTTAACTTCCCA+GGG | + | chr4_3:15277863-15277882 | None:intergenic | 40.0% | |
| AGGAAGCAAGAGGAAGAAGA+GGG | + | chr4_3:15274781-15274800 | None:intergenic | 45.0% | |
| AAGGAAGCAAGAGGAAGAAG+AGG | + | chr4_3:15274782-15274801 | None:intergenic | 45.0% | |
| GGGACAGAGTTCAAATCCAT+CGG | + | chr4_3:15275236-15275255 | None:intergenic | 45.0% | |
| ! | GGCTTTGTGAAGTTTGTGAG+TGG | + | chr4_3:15275493-15275512 | None:intergenic | 45.0% |
| CCCTTTATTGTCTCCCTTGA+AGG | - | chr4_3:15275537-15275556 | Msa0631860:intron | 45.0% | |
| ACTTTGTATCCCCTTAGAGC+TGG | - | chr4_3:15275906-15275925 | Msa0631860:intron | 45.0% | |
| !! | TTTTGCAAGGCCAGCTCTAA+GGG | + | chr4_3:15275919-15275938 | None:intergenic | 45.0% |
| ! | ATTTTGCAAGGCCAGCTCTA+AGG | + | chr4_3:15275920-15275939 | None:intergenic | 45.0% |
| TGAAACCAGACCCTATTCTG+AGG | - | chr4_3:15276592-15276611 | Msa0631860:CDS | 45.0% | |
| AGATTCCTCAGAATAGGGTC+TGG | + | chr4_3:15276600-15276619 | None:intergenic | 45.0% | |
| AATCGTCTGGTCCTCGTATA+AGG | - | chr4_3:15277379-15277398 | Msa0631860:intron | 45.0% | |
| ATCGTCTGGTCCTCGTATAA+GGG | - | chr4_3:15277380-15277399 | Msa0631860:intron | 45.0% | |
| AGTGTCCGCAATATACAAGC+TGG | - | chr4_3:15277572-15277591 | Msa0631860:intron | 45.0% | |
| TGTGGGACTTGACACAGTAT+TGG | - | chr4_3:15277601-15277620 | Msa0631860:intron | 45.0% | |
| GGAAGCTGTGCCTGAATTAT+GGG | - | chr4_3:15277809-15277828 | Msa0631860:intron | 45.0% | |
| AAATCAGAAGTGGCTTACCC+TGG | - | chr4_3:15277843-15277862 | Msa0631860:intron | 45.0% | |
| AATCAGAAGTGGCTTACCCT+GGG | - | chr4_3:15277844-15277863 | Msa0631860:intron | 45.0% | |
| GTGACTGATGTTAACTTCCC+AGG | + | chr4_3:15277864-15277883 | None:intergenic | 45.0% | |
| AGAGGGGGAGGAAATATGTG+AGG | + | chr4_3:15274764-15274783 | None:intergenic | 50.0% | |
| GAAGCAAGAGGAAGAAGAGG+GGG | + | chr4_3:15274779-15274798 | None:intergenic | 50.0% | |
| GGAAGCAAGAGGAAGAAGAG+GGG | + | chr4_3:15274780-15274799 | None:intergenic | 50.0% | |
| GATTTGAACTCTGTCCCTCG+AGG | - | chr4_3:15275239-15275258 | Msa0631860:CDS | 50.0% | |
| ATGGCGTACGAGGATCGATT+CGG | - | chr4_3:15275740-15275759 | Msa0631860:CDS | 50.0% | |
| !! | TTTGCAAGGCCAGCTCTAAG+GGG | + | chr4_3:15275918-15275937 | None:intergenic | 50.0% |
| TTGCATGTCAGTGTCGTGTC+AGG | + | chr4_3:15276040-15276059 | None:intergenic | 50.0% | |
| GGGAAGCTGTGCCTGAATTA+TGG | - | chr4_3:15277808-15277827 | Msa0631860:intron | 50.0% | |
| TCGGATCGAAATGGCGTACG+AGG | - | chr4_3:15275730-15275749 | Msa0631860:CDS | 55.0% | |
| TGTTGCTGAGCCTTCCCTAC+AGG | - | chr4_3:15276619-15276638 | Msa0631860:CDS | 55.0% | |
| GCAAGAGGAAGAAGAGGGGG+AGG | + | chr4_3:15274776-15274795 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 15274744 | 15278115 | 15274744 | ID=Msa0631860;Name=Msa0631860 |
| chr4_3 | mRNA | 15274744 | 15278115 | 15274744 | ID=Msa0631860-mRNA-1;Parent=Msa0631860;Name=Msa0631860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=195|1|1|1|0.87|0.77|9|225|296 |
| chr4_3 | exon | 15274744 | 15275112 | 15274744 | ID=Msa0631860-mRNA-1:exon:4346;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15275237 | 15275302 | 15275237 | ID=Msa0631860-mRNA-1:exon:4345;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15275588 | 15275914 | 15275588 | ID=Msa0631860-mRNA-1:exon:4344;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15276212 | 15276299 | 15276212 | ID=Msa0631860-mRNA-1:exon:4343;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15276403 | 15276440 | 15276403 | ID=Msa0631860-mRNA-1:exon:4342;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15276557 | 15276654 | 15276557 | ID=Msa0631860-mRNA-1:exon:4341;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15276899 | 15276964 | 15276899 | ID=Msa0631860-mRNA-1:exon:4340;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15277056 | 15277133 | 15277056 | ID=Msa0631860-mRNA-1:exon:4339;Parent=Msa0631860-mRNA-1 |
| chr4_3 | exon | 15277935 | 15278115 | 15277935 | ID=Msa0631860-mRNA-1:exon:4338;Parent=Msa0631860-mRNA-1 |
| chr4_3 | five_prime_UTR | 15277935 | 15278115 | 15277935 | ID=Msa0631860-mRNA-1:five_prime_utr;Parent=Msa0631860-mRNA-1 |
| chr4_3 | five_prime_UTR | 15277120 | 15277133 | 15277120 | ID=Msa0631860-mRNA-1:five_prime_utr;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15277056 | 15277119 | 15277056 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15276899 | 15276964 | 15276899 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15276557 | 15276654 | 15276557 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15276403 | 15276440 | 15276403 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15276212 | 15276299 | 15276212 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15275588 | 15275914 | 15275588 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15275237 | 15275302 | 15275237 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | CDS | 15274969 | 15275112 | 15274969 | ID=Msa0631860-mRNA-1:cds;Parent=Msa0631860-mRNA-1 |
| chr4_3 | three_prime_UTR | 15274744 | 15274968 | 15274744 | ID=Msa0631860-mRNA-1:three_prime_utr;Parent=Msa0631860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
