Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591930 | XP_013455015.1 | 99.324 | 296 | 2 | 0 | 1 | 296 | 1 | 296 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591930 | sp|Q09893|YAI5_SCHPO | 37.984 | 129 | 76 | 3 | 19 | 144 | 8 | 135 | 8.56e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591930 | A0A072UHY2 | 99.324 | 296 | 2 | 0 | 1 | 296 | 1 | 296 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0535460 | Msa0591930 | 0.929514 | 6.226768e-93 | -8.615850e-47 |
| Msa0591930 | Msa0631860 | 0.889158 | 3.111942e-73 | -8.615850e-47 |
| Msa0591930 | Msa0670990 | 0.869126 | 3.910288e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591930 | MtrunA17_Chr4g0009921 | 99.324 | 296 | 2 | 0 | 1 | 296 | 1 | 296 | 0.0 | 607 |
| Msa0591930 | MtrunA17_Chr7g0238911 | 85.149 | 303 | 36 | 4 | 1 | 296 | 1 | 301 | 0.0 | 520 |
| Msa0591930 | MtrunA17_Chr4g0009961 | 74.490 | 294 | 66 | 3 | 11 | 296 | 8 | 300 | 9.61e-159 | 444 |
| Msa0591930 | MtrunA17_Chr2g0328451 | 56.291 | 302 | 115 | 6 | 1 | 296 | 1 | 291 | 2.85e-113 | 328 |
| Msa0591930 | MtrunA17_Chr4g0031841 | 56.475 | 278 | 105 | 3 | 9 | 286 | 8 | 269 | 5.44e-111 | 322 |
| Msa0591930 | MtrunA17_Chr1g0193721 | 51.111 | 270 | 87 | 2 | 9 | 278 | 4 | 228 | 5.93e-95 | 280 |
| Msa0591930 | MtrunA17_Chr1g0205581 | 45.489 | 266 | 104 | 2 | 14 | 277 | 8 | 234 | 9.17e-78 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591930 | AT5G02230.2 | 66.667 | 300 | 76 | 5 | 1 | 296 | 1 | 280 | 2.24e-133 | 379 |
| Msa0591930 | AT5G02230.1 | 66.667 | 300 | 76 | 5 | 1 | 296 | 1 | 280 | 2.24e-133 | 379 |
| Msa0591930 | AT5G02230.3 | 66.667 | 300 | 76 | 5 | 1 | 296 | 38 | 317 | 1.21e-132 | 379 |
| Msa0591930 | AT5G59480.4 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 4.43e-123 | 353 |
| Msa0591930 | AT5G59480.5 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 4.43e-123 | 353 |
| Msa0591930 | AT5G59480.3 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 4.43e-123 | 353 |
| Msa0591930 | AT5G59480.1 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 4.43e-123 | 353 |
| Msa0591930 | AT5G59480.2 | 60.791 | 278 | 91 | 4 | 1 | 278 | 1 | 260 | 4.56e-121 | 348 |
| Msa0591930 | AT5G59490.1 | 56.554 | 267 | 83 | 2 | 15 | 281 | 10 | 243 | 2.32e-98 | 290 |
| Msa0591930 | AT3G62040.1 | 53.390 | 236 | 65 | 3 | 46 | 280 | 1 | 192 | 8.19e-84 | 251 |
| Msa0591930 | AT2G32150.1 | 46.591 | 264 | 103 | 3 | 14 | 277 | 4 | 229 | 2.36e-83 | 252 |
| Msa0591930 | AT5G59490.2 | 55.932 | 236 | 71 | 2 | 15 | 250 | 10 | 212 | 1.48e-80 | 243 |
| Msa0591930 | AT2G32150.2 | 46.835 | 237 | 88 | 3 | 14 | 250 | 4 | 202 | 1.77e-70 | 218 |
| Msa0591930 | AT2G32150.3 | 45.622 | 217 | 80 | 3 | 14 | 230 | 4 | 182 | 1.75e-61 | 193 |
Find 67 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACTACATTTGAATTT+AGG | 0.088582 | 4_2:-16922344 | None:intergenic |
| TGGAAAGCATTCACAATCTT+AGG | 0.188813 | 4_2:+16922131 | Msa0591930:CDS |
| ATCAACTACATTTGAATTTA+GGG | 0.218826 | 4_2:-16922343 | None:intergenic |
| GGGAAGCTGTGCCTGAATTA+TGG | 0.237248 | 4_2:+16922152 | Msa0591930:CDS |
| TCTGTTCTTCAAAATATTAA+AGG | 0.254928 | 4_2:+16920164 | Msa0591930:CDS |
| TCTGATGGCTTGCAAATAAT+TGG | 0.259115 | 4_2:-16921421 | None:intergenic |
| ATTATTGATCTCAGATTATA+TGG | 0.261485 | 4_2:+16920404 | Msa0591930:intron |
| GAACAACTATGTCTGGTCTA+AGG | 0.279798 | 4_2:+16920493 | Msa0591930:CDS |
| GAAGATGACATTGAGTTTCT+AGG | 0.281835 | 4_2:+16921298 | Msa0591930:CDS |
| TTATTAATGAACAATATTAA+AGG | 0.284764 | 4_2:-16922256 | None:intergenic |
| AACCTTCTTTACAAGAACTA+TGG | 0.325183 | 4_2:+16920471 | Msa0591930:CDS |
| GGTACATCACAAAGAGTTAA+AGG | 0.339752 | 4_2:+16922094 | Msa0591930:CDS |
| ATCAGAATTTGCCATTGAAT+TGG | 0.342165 | 4_2:+16921438 | Msa0591930:CDS |
| CTATATAAATAATGCCAAAA+AGG | 0.342608 | 4_2:-16922428 | None:intergenic |
| TTGGATTAGGTTGAGCAAAA+TGG | 0.343856 | 4_2:-16921375 | None:intergenic |
| TATTAATGAACAATATTAAA+GGG | 0.359324 | 4_2:-16922255 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4_2:+16921220 | Msa0591930:CDS |
| GGAAGCTGTGCCTGAATTAT+GGG | 0.383288 | 4_2:+16922153 | Msa0591930:CDS |
| TTCCATAGTTCTTGTAAAGA+AGG | 0.385298 | 4_2:-16920473 | None:intergenic |
| GAAACACTATTCTTGTGGAT+TGG | 0.410797 | 4_2:-16921268 | None:intergenic |
| ATTGAGTTTCTAGGTTCAAC+AGG | 0.416897 | 4_2:+16921307 | Msa0591930:CDS |
| TCTGGTTTCAAGTTCTCATA+TGG | 0.421731 | 4_2:-16920792 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.423151 | 4_2:+16920417 | Msa0591930:intron |
| GCAAGAGATTCCTCAGAATA+GGG | 0.425915 | 4_2:-16920815 | None:intergenic |
| AACTATGGAACAACTATGTC+TGG | 0.434621 | 4_2:+16920486 | Msa0591930:CDS |
| AAGACTACTAGACTTGGATT+AGG | 0.445717 | 4_2:-16921388 | None:intergenic |
| GTTAAGGGAAAATGAGAAAA+GGG | 0.447443 | 4_2:-16919085 | None:intergenic |
| AGACAAAGTTCATGCTGTTA+AGG | 0.455183 | 4_2:+16921183 | Msa0591930:CDS |
| GGAAAGCATTCACAATCTTA+GGG | 0.460709 | 4_2:+16922132 | Msa0591930:CDS |
| TGTTAAGGGAAAATGAGAAA+AGG | 0.467410 | 4_2:-16919086 | None:intergenic |
| ATGGCGTACGAGGATCGATT+CGG | 0.486437 | 4_2:+16919951 | Msa0591930:CDS |
| AGCAAGAGATTCCTCAGAAT+AGG | 0.488490 | 4_2:-16920816 | None:intergenic |
| TTAAGGATTTCGGATCGAAA+TGG | 0.489486 | 4_2:+16919932 | Msa0591930:intron |
| AAGGAAGCAAGAGGAAGAAG+AGG | 0.492030 | 4_2:-16918985 | None:intergenic |
| GTGACTGATGTTAACTTCCC+AGG | 0.494643 | 4_2:-16922205 | None:intergenic |
| TCTTGCTGAGCCTTCCCTAC+AGG | 0.495080 | 4_2:+16920832 | Msa0591930:CDS |
| AAGCAATACTAAGATATTGA+AGG | 0.503644 | 4_2:-16919004 | None:intergenic |
| GAAGCAAGAGGAAGAAGAGG+GGG | 0.507843 | 4_2:-16918982 | None:intergenic |
| AGATTCCTCAGAATAGGGTC+TGG | 0.510311 | 4_2:-16920810 | None:intergenic |
| AGGAAGCAAGAGGAAGAAGA+GGG | 0.510485 | 4_2:-16918984 | None:intergenic |
| GTTAAGGCACTAAGTAGACT+TGG | 0.514037 | 4_2:+16921199 | Msa0591930:CDS |
| CATCAGAAACACTATTCTTG+TGG | 0.516868 | 4_2:-16921273 | None:intergenic |
| AATCTTGAGAGCCAATTCAA+TGG | 0.517511 | 4_2:-16921449 | None:intergenic |
| ACTTTGTATCCCCTTAGAGC+TGG | 0.529127 | 4_2:+16920131 | Msa0591930:CDS |
| AAATCAGAAGTGGCATACCC+TGG | 0.536084 | 4_2:+16922187 | Msa0591930:CDS |
| AGTGCTTACAAGTTTCCTGT+AGG | 0.536657 | 4_2:-16920847 | None:intergenic |
| TAAAGGTGCAGATTATGCAT+TGG | 0.537919 | 4_2:+16922111 | Msa0591930:CDS |
| AACAACTATGTCTGGTCTAA+GGG | 0.538656 | 4_2:+16920494 | Msa0591930:CDS |
| GGAAGCAAGAGGAAGAAGAG+GGG | 0.538727 | 4_2:-16918983 | None:intergenic |
| GTGCTTACAAGTTTCCTGTA+GGG | 0.557416 | 4_2:-16920846 | None:intergenic |
| AATTCAATGGCAAATTCTGA+TGG | 0.561564 | 4_2:-16921436 | None:intergenic |
| AGTGTCCGCAATATACAAGC+TGG | 0.570089 | 4_2:+16921916 | Msa0591930:CDS |
| TTTGGCAAGACTACTAGACT+TGG | 0.570754 | 4_2:-16921394 | None:intergenic |
| AATCAGAAGTGGCATACCCT+GGG | 0.571637 | 4_2:+16922188 | Msa0591930:CDS |
| TTACAAGTTTCCTGTAGGGA+AGG | 0.575923 | 4_2:-16920842 | None:intergenic |
| TGTTCTTTGAGGGTTAATGT+TGG | 0.580694 | 4_2:-16921473 | None:intergenic |
| TGACTGATGTTAACTTCCCA+GGG | 0.594284 | 4_2:-16922204 | None:intergenic |
| TGTGGGACTTGACACAGTAT+TGG | 0.599786 | 4_2:+16921945 | Msa0591930:CDS |
| TCGGATCGAAATGGCGTACG+AGG | 0.602969 | 4_2:+16919941 | Msa0591930:exon |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 4_2:+16920648 | Msa0591930:CDS |
| AAATGACATAAAATCAGAAG+TGG | 0.612856 | 4_2:+16922177 | Msa0591930:CDS |
| TATACAAGCTGGAAAACGTG+TGG | 0.625983 | 4_2:+16921927 | Msa0591930:CDS |
| AAGCTTCAAGAGCAATGCAA+AGG | 0.631578 | 4_2:-16919050 | None:intergenic |
| AAGATATTGAAGGAAGCAAG+AGG | 0.638493 | 4_2:-16918994 | None:intergenic |
| ATACAAGCTGGAAAACGTGT+GGG | 0.658378 | 4_2:+16921928 | Msa0591930:CDS |
| TGAAACCAGACCCTATTCTG+AGG | 0.671934 | 4_2:+16920805 | Msa0591930:CDS |
| TTTGCAAGGCCAGCTCTAAG+GGG | 0.679893 | 4_2:-16920140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTATTATAAAA+TGG | + | chr4_2:16920710-16920729 | Msa0591930:intron | 0.0% |
| !! | TATTAATGAACAATATTAAA+GGG | - | chr4_2:16922258-16922277 | None:intergenic | 10.0% |
| !! | TTATTAATGAACAATATTAA+AGG | - | chr4_2:16922259-16922278 | None:intergenic | 10.0% |
| !! | AACATAAATAAATTTGTGTA+AGG | - | chr4_2:16919667-16919686 | None:intergenic | 15.0% |
| !! | TCATTCTCTTAAATTATTAT+TGG | - | chr4_2:16920264-16920283 | None:intergenic | 15.0% |
| !!! | TTTTATTTCATTTTCAATTC+AGG | + | chr4_2:16920610-16920629 | Msa0591930:intron | 15.0% |
| !!! | TGGATTTTAGAAATTATTTT+TGG | - | chr4_2:16921683-16921702 | None:intergenic | 15.0% |
| !!! | ATATTTTAACATCACTAAAT+TGG | - | chr4_2:16921703-16921722 | None:intergenic | 15.0% |
| !! | ATATGTTTCAATCAATAAAT+AGG | - | chr4_2:16922069-16922088 | None:intergenic | 15.0% |
| !!! | ATTTATTGATTGAAACATAT+AGG | + | chr4_2:16922069-16922088 | Msa0591930:intron | 15.0% |
| !! | CTTATTAAATTTCACTAACA+TGG | + | chr4_2:16919312-16919331 | Msa0591930:intron | 20.0% |
| !! | AACTCAGAGTTAAATATAAT+GGG | - | chr4_2:16919532-16919551 | None:intergenic | 20.0% |
| !! | AAACTCAGAGTTAAATATAA+TGG | - | chr4_2:16919533-16919552 | None:intergenic | 20.0% |
| !!! | TGTTGAATTTTTAAGGATTT+CGG | + | chr4_2:16919922-16919941 | Msa0591930:intron | 20.0% |
| !! | TCTGTTCTTCAAAATATTAA+AGG | + | chr4_2:16920164-16920183 | Msa0591930:CDS | 20.0% |
| !! | TGAAAGTGATTAAATATAAC+TGG | + | chr4_2:16920281-16920300 | Msa0591930:intron | 20.0% |
| !! | ATTATTGATCTCAGATTATA+TGG | + | chr4_2:16920404-16920423 | Msa0591930:intron | 20.0% |
| !!! | ATATTTTACAGGAAATGATT+AGG | - | chr4_2:16920542-16920561 | None:intergenic | 20.0% |
| !!! | GGTATTGATTGTAAATATAA+TGG | + | chr4_2:16920586-16920605 | Msa0591930:intron | 20.0% |
| !! | AATTTACTGATGTTAAAACA+CGG | + | chr4_2:16921581-16921600 | Msa0591930:intron | 20.0% |
| !!! | TAATTTTCAGTTGTTTTTTG+AGG | + | chr4_2:16921891-16921910 | Msa0591930:intron | 20.0% |
| !! | AACAAAAAAATTTAAGAGCA+TGG | + | chr4_2:16922312-16922331 | Msa0591930:three_prime_UTR | 20.0% |
| !!! | ACAAAAAAATTTAAGAGCAT+GGG | + | chr4_2:16922313-16922332 | Msa0591930:three_prime_UTR | 20.0% |
| !! | ATCAACTACATTTGAATTTA+GGG | - | chr4_2:16922346-16922365 | None:intergenic | 20.0% |
| !!! | AATGAATAAATTCTCCTTTT+TGG | + | chr4_2:16922414-16922433 | Msa0591930:three_prime_UTR | 20.0% |
| !! | CTATATAAATAATGCCAAAA+AGG | - | chr4_2:16922431-16922450 | None:intergenic | 20.0% |
| ! | AAGCAATACTAAGATATTGA+AGG | - | chr4_2:16919007-16919026 | None:intergenic | 25.0% |
| ! | GAAAAATGAGTGATTGTTAA+GGG | - | chr4_2:16919103-16919122 | None:intergenic | 25.0% |
| !!! | ATCACTCATTTTTCCATTTT+TGG | + | chr4_2:16919109-16919128 | Msa0591930:five_prime_UTR | 25.0% |
| !!! | TTCCATTTTTGGTAAGTTAA+TGG | + | chr4_2:16919120-16919139 | Msa0591930:intron | 25.0% |
| ! | AACCATTAACTTACCAAAAA+TGG | - | chr4_2:16919125-16919144 | None:intergenic | 25.0% |
| ! | ATGGTTGATTGAAAATCAAA+AGG | - | chr4_2:16919210-16919229 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTCAATCAACCA+TGG | + | chr4_2:16919209-16919228 | Msa0591930:intron | 25.0% |
| ! | TACTAATCATAGGTTAATGT+TGG | - | chr4_2:16919260-16919279 | None:intergenic | 25.0% |
| ! | ATATTCATGGTACTAATCAT+AGG | - | chr4_2:16919270-16919289 | None:intergenic | 25.0% |
| ! | TATGATTAGTACCATGAATA+TGG | + | chr4_2:16919269-16919288 | Msa0591930:intron | 25.0% |
| ! | AAATCTCAAAACCATATTCA+TGG | - | chr4_2:16919283-16919302 | None:intergenic | 25.0% |
| ! | ATTAAGAATCACCATTTCTT+TGG | + | chr4_2:16919349-16919368 | Msa0591930:intron | 25.0% |
| ! | GTATAGAATAACCAAAGAAA+TGG | - | chr4_2:16919363-16919382 | None:intergenic | 25.0% |
| !!! | GTGCATTTTTTTAGCAAAAA+AGG | - | chr4_2:16919471-16919490 | None:intergenic | 25.0% |
| ! | ATTGATCGTTTGATAAACTT+TGG | - | chr4_2:16919561-16919580 | None:intergenic | 25.0% |
| ! | TCAATTCATCTTTCAAAAGT+TGG | + | chr4_2:16919576-16919595 | Msa0591930:intron | 25.0% |
| !! | TGTTCTGTGTTGAATTTTTA+AGG | + | chr4_2:16919915-16919934 | Msa0591930:intron | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | + | chr4_2:16919993-16920012 | Msa0591930:CDS | 25.0% |
| ! | TCAAGAAACAACATATAACA+CGG | - | chr4_2:16920356-16920375 | None:intergenic | 25.0% |
| ! | AGGAAATGATTAGGAATTTA+AGG | - | chr4_2:16920533-16920552 | None:intergenic | 25.0% |
| !! | ACAATGGAAACATATTTTAC+AGG | - | chr4_2:16920553-16920572 | None:intergenic | 25.0% |
| ! | TCCATTGTTAAATTGTGAAA+AGG | + | chr4_2:16920565-16920584 | Msa0591930:intron | 25.0% |
| !! | ACCTTTTCACAATTTAACAA+TGG | - | chr4_2:16920569-16920588 | None:intergenic | 25.0% |
| ! | AATAACAGTTTGAAAGTGAA+GGG | - | chr4_2:16920695-16920714 | None:intergenic | 25.0% |
| ! | AAATAACAGTTTGAAAGTGA+AGG | - | chr4_2:16920696-16920715 | None:intergenic | 25.0% |
| !!! | ATTATTTGCAGTTTTGTTCA+TGG | + | chr4_2:16920762-16920781 | Msa0591930:intron | 25.0% |
| !! | CAAGCAAAAAACAACTTTTT+AGG | + | chr4_2:16920954-16920973 | Msa0591930:intron | 25.0% |
| ! | CATTGAATAACTAATGTATC+TGG | - | chr4_2:16921017-16921036 | None:intergenic | 25.0% |
| !! | TTTTCGCTTATAAATATGAC+CGG | + | chr4_2:16921052-16921071 | Msa0591930:intron | 25.0% |
| ! | ACAAGAGAAACAATTAATAG+AGG | - | chr4_2:16921137-16921156 | None:intergenic | 25.0% |
| !!! | TTGCAAATAATTGGTGTTTT+TGG | - | chr4_2:16921415-16921434 | None:intergenic | 25.0% |
| !! | TTTTACTTACTGTTCTTTGA+GGG | - | chr4_2:16921486-16921505 | None:intergenic | 25.0% |
| !! | ATTTTACTTACTGTTCTTTG+AGG | - | chr4_2:16921487-16921506 | None:intergenic | 25.0% |
| !!! | GTGTTTTAACATCAGTAAAT+TGG | - | chr4_2:16921582-16921601 | None:intergenic | 25.0% |
| ! | TAATATCATGCATATTCACT+CGG | - | chr4_2:16921636-16921655 | None:intergenic | 25.0% |
| !!! | TTAGAAATTATTTTTGGAGC+TGG | - | chr4_2:16921677-16921696 | None:intergenic | 25.0% |
| !!! | TTGTTAGCTAACTTTTTCTA+TGG | + | chr4_2:16921859-16921878 | Msa0591930:intron | 25.0% |
| ! | ATTGATTGAAACATATAGGT+TGG | + | chr4_2:16922073-16922092 | Msa0591930:intron | 25.0% |
| ! | AAATGACATAAAATCAGAAG+TGG | + | chr4_2:16922177-16922196 | Msa0591930:CDS | 25.0% |
| !! | CAAAAAAATTTAAGAGCATG+GGG | + | chr4_2:16922314-16922333 | Msa0591930:three_prime_UTR | 25.0% |
| ! | CATCAACTACATTTGAATTT+AGG | - | chr4_2:16922347-16922366 | None:intergenic | 25.0% |
| GTTAAGGGAAAATGAGAAAA+GGG | - | chr4_2:16919088-16919107 | None:intergenic | 30.0% | |
| TGTTAAGGGAAAATGAGAAA+AGG | - | chr4_2:16919089-16919108 | None:intergenic | 30.0% | |
| GGAAAAATGAGTGATTGTTA+AGG | - | chr4_2:16919104-16919123 | None:intergenic | 30.0% | |
| GATTGAAAATCAAAAGGTGA+AGG | - | chr4_2:16919204-16919223 | None:intergenic | 30.0% | |
| !!! | TTTCAATGATTTTGAAGCCA+TGG | - | chr4_2:16919229-16919248 | None:intergenic | 30.0% |
| ACTAACATGGAACAAATGAT+TGG | + | chr4_2:16919325-16919344 | Msa0591930:intron | 30.0% | |
| ! | TATTTTACAACGATATCCGA+TGG | + | chr4_2:16919423-16919442 | Msa0591930:intron | 30.0% |
| !!! | TTCAAAAGTTGGTTTGCTTT+TGG | + | chr4_2:16919587-16919606 | Msa0591930:intron | 30.0% |
| ! | AATCCACATCATTTAGGATA+AGG | - | chr4_2:16919725-16919744 | None:intergenic | 30.0% |
| ! | AAGGATCATTTTGCATCTTT+TGG | + | chr4_2:16919767-16919786 | Msa0591930:intron | 30.0% |
| TCAGAATCTATTCATCAACA+TGG | - | chr4_2:16919835-16919854 | None:intergenic | 30.0% | |
| ! | TTTGAAGAACAGATTTTGCA+AGG | - | chr4_2:16920157-16920176 | None:intergenic | 30.0% |
| AACCTTCTTTACAAGAACTA+TGG | + | chr4_2:16920471-16920490 | Msa0591930:CDS | 30.0% | |
| TTCCATAGTTCTTGTAAAGA+AGG | - | chr4_2:16920476-16920495 | None:intergenic | 30.0% | |
| ! | TCATTTTCAATTCAGGCAAT+TGG | + | chr4_2:16920617-16920636 | Msa0591930:intron | 30.0% |
| TTGACTATGATGAATATCAC+AGG | + | chr4_2:16920648-16920667 | Msa0591930:CDS | 30.0% | |
| ! | TTTTTGCTTGTAAATGTGAC+TGG | - | chr4_2:16920944-16920963 | None:intergenic | 30.0% |
| AATTCAATGGCAAATTCTGA+TGG | - | chr4_2:16921439-16921458 | None:intergenic | 30.0% | |
| ATCAGAATTTGCCATTGAAT+TGG | + | chr4_2:16921438-16921457 | Msa0591930:CDS | 30.0% | |
| AAATATTAATCGTCTGATCC+TGG | + | chr4_2:16921717-16921736 | Msa0591930:intron | 30.0% | |
| TAATACCATGCATATTCACT+CGG | - | chr4_2:16921757-16921776 | None:intergenic | 30.0% | |
| TGAGTTGTGACACATTAAAA+AGG | - | chr4_2:16922040-16922059 | None:intergenic | 30.0% | |
| !!! | ATGTCATTTTCCCATAATTC+AGG | - | chr4_2:16922166-16922185 | None:intergenic | 30.0% |
| AAGATATTGAAGGAAGCAAG+AGG | - | chr4_2:16918997-16919016 | None:intergenic | 35.0% | |
| ATCAAAAGGTGAAGGTTTGA+GGG | - | chr4_2:16919196-16919215 | None:intergenic | 35.0% | |
| AATCAAAAGGTGAAGGTTTG+AGG | - | chr4_2:16919197-16919216 | None:intergenic | 35.0% | |
| ! | AAGCCTTATCCTAAATGATG+TGG | + | chr4_2:16919719-16919738 | Msa0591930:intron | 35.0% |
| GATGCAAAATGATCCTTCAA+GGG | - | chr4_2:16919764-16919783 | None:intergenic | 35.0% | |
| AGATGCAAAATGATCCTTCA+AGG | - | chr4_2:16919765-16919784 | None:intergenic | 35.0% | |
| TTAAGGATTTCGGATCGAAA+TGG | + | chr4_2:16919932-16919951 | Msa0591930:intron | 35.0% | |
| !! | TGATTGCCTTCTTTTTGGTA+AGG | + | chr4_2:16919998-16920017 | Msa0591930:intron | 35.0% |
| TACAAGCCTTACCAAAAAGA+AGG | - | chr4_2:16920007-16920026 | None:intergenic | 35.0% | |
| GTCATGTCTGATATCTTTGT+CGG | - | chr4_2:16920226-16920245 | None:intergenic | 35.0% | |
| ! | AATATAACTGGTGTCAGTGT+CGG | + | chr4_2:16920293-16920312 | Msa0591930:intron | 35.0% |
| CTTCAGATTGAATGTCTATC+TGG | - | chr4_2:16920330-16920349 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | + | chr4_2:16920417-16920436 | Msa0591930:intron | 35.0% | |
| AACTATGGAACAACTATGTC+TGG | + | chr4_2:16920486-16920505 | Msa0591930:CDS | 35.0% | |
| AACAACTATGTCTGGTCTAA+GGG | + | chr4_2:16920494-16920513 | Msa0591930:CDS | 35.0% | |
| !! | TCTGGTTTCAAGTTCTCATA+TGG | - | chr4_2:16920795-16920814 | None:intergenic | 35.0% |
| TGTTTATATACTACTCCCTC+CGG | - | chr4_2:16921074-16921093 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCTGTTA+AGG | + | chr4_2:16921183-16921202 | Msa0591930:CDS | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | + | chr4_2:16921220-16921239 | Msa0591930:CDS | 35.0% | |
| GAAACACTATTCTTGTGGAT+TGG | - | chr4_2:16921271-16921290 | None:intergenic | 35.0% | |
| CATCAGAAACACTATTCTTG+TGG | - | chr4_2:16921276-16921295 | None:intergenic | 35.0% | |
| GAAGATGACATTGAGTTTCT+AGG | + | chr4_2:16921298-16921317 | Msa0591930:CDS | 35.0% | |
| ! | ATTGAGTTTCTAGGTTCAAC+AGG | + | chr4_2:16921307-16921326 | Msa0591930:CDS | 35.0% |
| !! | TTGGATTAGGTTGAGCAAAA+TGG | - | chr4_2:16921378-16921397 | None:intergenic | 35.0% |
| AAGACTACTAGACTTGGATT+AGG | - | chr4_2:16921391-16921410 | None:intergenic | 35.0% | |
| ! | TCTGATGGCTTGCAAATAAT+TGG | - | chr4_2:16921424-16921443 | None:intergenic | 35.0% |
| AATCTTGAGAGCCAATTCAA+TGG | - | chr4_2:16921452-16921471 | None:intergenic | 35.0% | |
| ! | TGTTCTTTGAGGGTTAATGT+TGG | - | chr4_2:16921476-16921495 | None:intergenic | 35.0% |
| CATGGTATTACGACTATAGT+CGG | + | chr4_2:16921767-16921786 | Msa0591930:intron | 35.0% | |
| ! | GTTTTCCAGCTTGTATATTG+CGG | - | chr4_2:16921924-16921943 | None:intergenic | 35.0% |
| GGTACATCACAAAGAGTTAA+AGG | + | chr4_2:16922094-16922113 | Msa0591930:CDS | 35.0% | |
| ! | TAAAGGTGCAGATTATGCAT+TGG | + | chr4_2:16922111-16922130 | Msa0591930:CDS | 35.0% |
| !! | TGGAAAGCATTCACAATCTT+AGG | + | chr4_2:16922131-16922150 | Msa0591930:CDS | 35.0% |
| !! | GGAAAGCATTCACAATCTTA+GGG | + | chr4_2:16922132-16922151 | Msa0591930:CDS | 35.0% |
| AAGCTTCAAGAGCAATGCAA+AGG | - | chr4_2:16919053-16919072 | None:intergenic | 40.0% | |
| TTTAGCAAAAAAGGCCTCGA+GGG | - | chr4_2:16919462-16919481 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAAAAAGGCCTCG+AGG | - | chr4_2:16919463-16919482 | None:intergenic | 40.0% |
| !!! | AGTTGGTTTGCTTTTGGAAG+TGG | + | chr4_2:16919593-16919612 | Msa0591930:intron | 40.0% |
| TTGTGAAGTTTGTGAGTGGA+CGG | - | chr4_2:16919700-16919719 | None:intergenic | 40.0% | |
| GGGACTAATCCACATCATTT+AGG | - | chr4_2:16919731-16919750 | None:intergenic | 40.0% | |
| CCTTCAAGGGAGACAATAAA+GGG | - | chr4_2:16919751-16919770 | None:intergenic | 40.0% | |
| TCCTTCAAGGGAGACAATAA+AGG | - | chr4_2:16919752-16919771 | None:intergenic | 40.0% | |
| GAACAACTATGTCTGGTCTA+AGG | + | chr4_2:16920493-16920512 | Msa0591930:CDS | 40.0% | |
| GCAAGAGATTCCTCAGAATA+GGG | - | chr4_2:16920818-16920837 | None:intergenic | 40.0% | |
| AGCAAGAGATTCCTCAGAAT+AGG | - | chr4_2:16920819-16920838 | None:intergenic | 40.0% | |
| TTACAAGTTTCCTGTAGGGA+AGG | - | chr4_2:16920845-16920864 | None:intergenic | 40.0% | |
| GTGCTTACAAGTTTCCTGTA+GGG | - | chr4_2:16920849-16920868 | None:intergenic | 40.0% | |
| AGTGCTTACAAGTTTCCTGT+AGG | - | chr4_2:16920850-16920869 | None:intergenic | 40.0% | |
| TGCTTGTAAATGTGACTGGA+GGG | - | chr4_2:16920940-16920959 | None:intergenic | 40.0% | |
| TTGCTTGTAAATGTGACTGG+AGG | - | chr4_2:16920941-16920960 | None:intergenic | 40.0% | |
| TCGCTTATAAATATGACCGG+AGG | + | chr4_2:16921055-16921074 | Msa0591930:intron | 40.0% | |
| CGCTTATAAATATGACCGGA+GGG | + | chr4_2:16921056-16921075 | Msa0591930:intron | 40.0% | |
| ! | GTTAAGGCACTAAGTAGACT+TGG | + | chr4_2:16921199-16921218 | Msa0591930:CDS | 40.0% |
| TTTGGCAAGACTACTAGACT+TGG | - | chr4_2:16921397-16921416 | None:intergenic | 40.0% | |
| AATCGTCTGATCCTGGTATA+AGG | + | chr4_2:16921724-16921743 | Msa0591930:intron | 40.0% | |
| TCGGTCAAAATCCTTATACC+AGG | - | chr4_2:16921738-16921757 | None:intergenic | 40.0% | |
| TTTGACCGAGTGAATATGCA+TGG | + | chr4_2:16921749-16921768 | Msa0591930:intron | 40.0% | |
| TATACAAGCTGGAAAACGTG+TGG | + | chr4_2:16921927-16921946 | Msa0591930:CDS | 40.0% | |
| ATACAAGCTGGAAAACGTGT+GGG | + | chr4_2:16921928-16921947 | Msa0591930:CDS | 40.0% | |
| TGACTGATGTTAACTTCCCA+GGG | - | chr4_2:16922207-16922226 | None:intergenic | 40.0% | |
| AGGAAGCAAGAGGAAGAAGA+GGG | - | chr4_2:16918987-16919006 | None:intergenic | 45.0% | |
| AAGGAAGCAAGAGGAAGAAG+AGG | - | chr4_2:16918988-16919007 | None:intergenic | 45.0% | |
| GGGACAGAGTTCAAATCCAT+CGG | - | chr4_2:16919442-16919461 | None:intergenic | 45.0% | |
| ! | GGCTTTGTGAAGTTTGTGAG+TGG | - | chr4_2:16919704-16919723 | None:intergenic | 45.0% |
| CCCTTTATTGTCTCCCTTGA+AGG | + | chr4_2:16919748-16919767 | Msa0591930:intron | 45.0% | |
| ACTTTGTATCCCCTTAGAGC+TGG | + | chr4_2:16920131-16920150 | Msa0591930:CDS | 45.0% | |
| !! | TTTTGCAAGGCCAGCTCTAA+GGG | - | chr4_2:16920144-16920163 | None:intergenic | 45.0% |
| ! | ATTTTGCAAGGCCAGCTCTA+AGG | - | chr4_2:16920145-16920164 | None:intergenic | 45.0% |
| TGAAACCAGACCCTATTCTG+AGG | + | chr4_2:16920805-16920824 | Msa0591930:CDS | 45.0% | |
| AGATTCCTCAGAATAGGGTC+TGG | - | chr4_2:16920813-16920832 | None:intergenic | 45.0% | |
| ATCGTCTGATCCTCGTGTAA+GGG | + | chr4_2:16921604-16921623 | Msa0591930:intron | 45.0% | |
| AGTGTCCGCAATATACAAGC+TGG | + | chr4_2:16921916-16921935 | Msa0591930:CDS | 45.0% | |
| TGTGGGACTTGACACAGTAT+TGG | + | chr4_2:16921945-16921964 | Msa0591930:CDS | 45.0% | |
| GGAAGCTGTGCCTGAATTAT+GGG | + | chr4_2:16922153-16922172 | Msa0591930:CDS | 45.0% | |
| AAATCAGAAGTGGCATACCC+TGG | + | chr4_2:16922187-16922206 | Msa0591930:CDS | 45.0% | |
| AATCAGAAGTGGCATACCCT+GGG | + | chr4_2:16922188-16922207 | Msa0591930:CDS | 45.0% | |
| GTGACTGATGTTAACTTCCC+AGG | - | chr4_2:16922208-16922227 | None:intergenic | 45.0% | |
| AGAGGGGGAGGAAATATGTG+AGG | - | chr4_2:16918970-16918989 | None:intergenic | 50.0% | |
| GAAGCAAGAGGAAGAAGAGG+GGG | - | chr4_2:16918985-16919004 | None:intergenic | 50.0% | |
| GGAAGCAAGAGGAAGAAGAG+GGG | - | chr4_2:16918986-16919005 | None:intergenic | 50.0% | |
| GATTTGAACTCTGTCCCTCG+AGG | + | chr4_2:16919445-16919464 | Msa0591930:intron | 50.0% | |
| ATGGCGTACGAGGATCGATT+CGG | + | chr4_2:16919951-16919970 | Msa0591930:CDS | 50.0% | |
| !! | TTTGCAAGGCCAGCTCTAAG+GGG | - | chr4_2:16920143-16920162 | None:intergenic | 50.0% |
| GATCGTCTGATCCTCGTGTA+AGG | + | chr4_2:16921603-16921622 | Msa0591930:intron | 50.0% | |
| GGGAAGCTGTGCCTGAATTA+TGG | + | chr4_2:16922152-16922171 | Msa0591930:CDS | 50.0% | |
| TCGGATCGAAATGGCGTACG+AGG | + | chr4_2:16919941-16919960 | Msa0591930:exon | 55.0% | |
| TCTTGCTGAGCCTTCCCTAC+AGG | + | chr4_2:16920832-16920851 | Msa0591930:CDS | 55.0% | |
| TCGGTCAGAACCCTTACACG+AGG | - | chr4_2:16921617-16921636 | None:intergenic | 55.0% | |
| GCAAGAGGAAGAAGAGGGGG+AGG | - | chr4_2:16918982-16919001 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 16918950 | 16922459 | 16918950 | ID=Msa0591930;Name=Msa0591930 |
| chr4_2 | mRNA | 16918950 | 16922459 | 16918950 | ID=Msa0591930-mRNA-1;Parent=Msa0591930;Name=Msa0591930-mRNA-1;_AED=0.27;_eAED=0.27;_QI=195|1|1|1|0.87|0.77|9|225|296 |
| chr4_2 | exon | 16918950 | 16919130 | 16918950 | ID=Msa0591930-mRNA-1:exon:4897;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16919937 | 16920014 | 16919937 | ID=Msa0591930-mRNA-1:exon:4898;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16920120 | 16920185 | 16920120 | ID=Msa0591930-mRNA-1:exon:4899;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16920418 | 16920515 | 16920418 | ID=Msa0591930-mRNA-1:exon:4900;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16920632 | 16920669 | 16920632 | ID=Msa0591930-mRNA-1:exon:4901;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16920773 | 16920860 | 16920773 | ID=Msa0591930-mRNA-1:exon:4902;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16921169 | 16921495 | 16921169 | ID=Msa0591930-mRNA-1:exon:4903;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16921901 | 16921966 | 16921901 | ID=Msa0591930-mRNA-1:exon:4904;Parent=Msa0591930-mRNA-1 |
| chr4_2 | exon | 16922091 | 16922459 | 16922091 | ID=Msa0591930-mRNA-1:exon:4905;Parent=Msa0591930-mRNA-1 |
| chr4_2 | five_prime_UTR | 16918950 | 16919130 | 16918950 | ID=Msa0591930-mRNA-1:five_prime_utr;Parent=Msa0591930-mRNA-1 |
| chr4_2 | five_prime_UTR | 16919937 | 16919950 | 16919937 | ID=Msa0591930-mRNA-1:five_prime_utr;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16919951 | 16920014 | 16919951 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16920120 | 16920185 | 16920120 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16920418 | 16920515 | 16920418 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16920632 | 16920669 | 16920632 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16920773 | 16920860 | 16920773 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16921169 | 16921495 | 16921169 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16921901 | 16921966 | 16921901 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | CDS | 16922091 | 16922234 | 16922091 | ID=Msa0591930-mRNA-1:cds;Parent=Msa0591930-mRNA-1 |
| chr4_2 | three_prime_UTR | 16922235 | 16922459 | 16922235 | ID=Msa0591930-mRNA-1:three_prime_utr;Parent=Msa0591930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
