Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670990 | XP_013455015.1 | 99.662 | 296 | 1 | 0 | 1 | 296 | 1 | 296 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670990 | sp|Q09893|YAI5_SCHPO | 37.984 | 129 | 76 | 3 | 19 | 144 | 8 | 135 | 7.98e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670990 | A0A072UHY2 | 99.662 | 296 | 1 | 0 | 1 | 296 | 1 | 296 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631860 | Msa0670990 | 0.935491 | 7.806369e-97 | -8.615850e-47 |
| Msa0670990 | Msa1218290 | 0.803574 | 3.267108e-49 | -8.615850e-47 |
| Msa0670990 | Msa1218330 | 0.805341 | 1.398954e-49 | -8.615850e-47 |
| Msa0535460 | Msa0670990 | 0.822389 | 2.431881e-53 | -8.615850e-47 |
| Msa0591930 | Msa0670990 | 0.869126 | 3.910288e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670990 | MtrunA17_Chr4g0009921 | 99.662 | 296 | 1 | 0 | 1 | 296 | 1 | 296 | 0.0 | 608 |
| Msa0670990 | MtrunA17_Chr7g0238911 | 85.149 | 303 | 36 | 4 | 1 | 296 | 1 | 301 | 0.0 | 521 |
| Msa0670990 | MtrunA17_Chr4g0009961 | 74.490 | 294 | 66 | 3 | 11 | 296 | 8 | 300 | 3.96e-159 | 445 |
| Msa0670990 | MtrunA17_Chr2g0328451 | 56.333 | 300 | 118 | 5 | 1 | 296 | 1 | 291 | 9.05e-114 | 330 |
| Msa0670990 | MtrunA17_Chr4g0031841 | 56.475 | 278 | 105 | 3 | 9 | 286 | 8 | 269 | 3.44e-111 | 323 |
| Msa0670990 | MtrunA17_Chr1g0193721 | 51.111 | 270 | 87 | 2 | 9 | 278 | 4 | 228 | 4.42e-95 | 281 |
| Msa0670990 | MtrunA17_Chr1g0205581 | 45.489 | 266 | 104 | 2 | 14 | 277 | 8 | 234 | 7.38e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670990 | AT5G02230.2 | 66.667 | 300 | 76 | 5 | 1 | 296 | 1 | 280 | 2.17e-133 | 379 |
| Msa0670990 | AT5G02230.1 | 66.667 | 300 | 76 | 5 | 1 | 296 | 1 | 280 | 2.17e-133 | 379 |
| Msa0670990 | AT5G02230.3 | 66.667 | 300 | 76 | 5 | 1 | 296 | 38 | 317 | 5.62e-133 | 380 |
| Msa0670990 | AT5G59480.4 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.91e-123 | 354 |
| Msa0670990 | AT5G59480.5 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.91e-123 | 354 |
| Msa0670990 | AT5G59480.3 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.91e-123 | 354 |
| Msa0670990 | AT5G59480.1 | 60.791 | 278 | 92 | 3 | 1 | 278 | 1 | 261 | 1.91e-123 | 354 |
| Msa0670990 | AT5G59480.2 | 60.791 | 278 | 91 | 4 | 1 | 278 | 1 | 260 | 2.01e-121 | 349 |
| Msa0670990 | AT5G59490.1 | 56.180 | 267 | 84 | 3 | 15 | 281 | 10 | 243 | 9.18e-98 | 288 |
| Msa0670990 | AT3G62040.1 | 53.390 | 236 | 65 | 3 | 46 | 280 | 1 | 192 | 7.42e-84 | 251 |
| Msa0670990 | AT2G32150.1 | 46.591 | 264 | 103 | 3 | 14 | 277 | 4 | 229 | 1.38e-83 | 252 |
| Msa0670990 | AT5G59490.2 | 55.508 | 236 | 72 | 3 | 15 | 250 | 10 | 212 | 5.84e-80 | 241 |
| Msa0670990 | AT2G32150.2 | 46.835 | 237 | 88 | 3 | 14 | 250 | 4 | 202 | 1.05e-70 | 218 |
| Msa0670990 | AT2G32150.3 | 45.161 | 217 | 81 | 2 | 14 | 230 | 4 | 182 | 9.01e-62 | 194 |
Find 67 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACTACATTTGAATTT+AGG | 0.088582 | 4_4:+13909422 | None:intergenic |
| TGGAAAGCATTCACAATCTT+AGG | 0.188813 | 4_4:-13909635 | Msa0670990:CDS |
| TCTGAAGGCTTGCAAATAAT+TGG | 0.198979 | 4_4:+13910228 | None:intergenic |
| ATTATTGATCTTAGATTATA+TGG | 0.217322 | 4_4:-13911333 | Msa0670990:intron |
| ATCAACTACATTTGAATTTA+GGG | 0.218826 | 4_4:+13909423 | None:intergenic |
| GGGAAGCTGTGCCTGAATTA+TGG | 0.237248 | 4_4:-13909614 | Msa0670990:CDS |
| TCTGTTCTTCAAAATATTAA+AGG | 0.254928 | 4_4:-13911576 | Msa0670990:intron |
| GAACAACTATGTCTGGTCTA+AGG | 0.279798 | 4_4:-13911244 | Msa0670990:CDS |
| GAAGATGACATTGAGTTTCT+AGG | 0.281835 | 4_4:-13910351 | Msa0670990:CDS |
| TTATTAATGAACAATATTAA+AGG | 0.284764 | 4_4:+13909510 | None:intergenic |
| GGTACATCACAAAGAGTTAA+AGG | 0.339752 | 4_4:-13909672 | Msa0670990:CDS |
| CTATATAAATAATGCCAAAA+AGG | 0.342608 | 4_4:+13909338 | None:intergenic |
| TTCAGAATTTGCCATTGAAT+TGG | 0.343418 | 4_4:-13910211 | Msa0670990:CDS |
| TTGGATTAGGTTGAGCAAAA+TGG | 0.343856 | 4_4:+13910274 | None:intergenic |
| TATTAATGAACAATATTAAA+GGG | 0.359324 | 4_4:+13909511 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4_4:-13910429 | Msa0670990:CDS |
| GGAAGCTGTGCCTGAATTAT+GGG | 0.383288 | 4_4:-13909613 | Msa0670990:CDS |
| GATTATATGGTTGAGAAGCT+TGG | 0.394134 | 4_4:-13911320 | Msa0670990:CDS |
| AACCTCCTTTACAAGAACTA+TGG | 0.408417 | 4_4:-13911266 | Msa0670990:CDS |
| GAAACACTATTCTTGTGGAT+TGG | 0.410797 | 4_4:+13910381 | None:intergenic |
| AAAACTACTAGACTTGGATT+AGG | 0.430040 | 4_4:+13910261 | None:intergenic |
| GCAACAGATTCCTCAGAATA+GGG | 0.431482 | 4_4:+13910922 | None:intergenic |
| AACTATGGAACAACTATGTC+TGG | 0.434621 | 4_4:-13911251 | Msa0670990:CDS |
| GTTAAGGGAAAATGAGAAAA+GGG | 0.447443 | 4_4:+13912655 | None:intergenic |
| TCTGGTTTCAAGTTCTCATA+AGG | 0.450135 | 4_4:+13910945 | None:intergenic |
| AGACAAAGTTCATGCTGTTA+AGG | 0.455183 | 4_4:-13910466 | Msa0670990:CDS |
| GGAAAGCATTCACAATCTTA+GGG | 0.460709 | 4_4:-13909634 | Msa0670990:CDS |
| TGTTAAGGGAAAATGAGAAA+AGG | 0.467410 | 4_4:+13912654 | None:intergenic |
| AGCAACAGATTCCTCAGAAT+AGG | 0.476120 | 4_4:+13910921 | None:intergenic |
| ATGGCGTACGAGGATCGATT+CGG | 0.486437 | 4_4:-13911789 | Msa0670990:CDS |
| TTAAGGATTTCGGATCGAAA+TGG | 0.489486 | 4_4:-13911808 | Msa0670990:intron |
| AAGGAAGCAAGAGGAAGAAG+AGG | 0.492030 | 4_4:+13912755 | None:intergenic |
| TGTTGCTGAGCCTTCCCTAC+AGG | 0.493051 | 4_4:-13910905 | Msa0670990:CDS |
| GTGACTGATGTTAACTTCCC+AGG | 0.494643 | 4_4:+13909561 | None:intergenic |
| AAGCAATACTAAGATATTGA+AGG | 0.503644 | 4_4:+13912736 | None:intergenic |
| GAAGCAAGAGGAAGAAGAGG+GGG | 0.507843 | 4_4:+13912758 | None:intergenic |
| AGATTCCTCAGAATAGGGTC+TGG | 0.510311 | 4_4:+13910927 | None:intergenic |
| AGGAAGCAAGAGGAAGAAGA+GGG | 0.510485 | 4_4:+13912756 | None:intergenic |
| TTTGGCAAAACTACTAGACT+TGG | 0.513417 | 4_4:+13910255 | None:intergenic |
| GTTAAGGCACTAAGTAGACT+TGG | 0.514037 | 4_4:-13910450 | Msa0670990:CDS |
| CATCAGAAACACTATTCTTG+TGG | 0.516868 | 4_4:+13910376 | None:intergenic |
| AATCTTGAGAGCCAATTCAA+TGG | 0.517511 | 4_4:+13910200 | None:intergenic |
| TTGTTCCATAGTTCTTGTAA+AGG | 0.520994 | 4_4:+13911261 | None:intergenic |
| ACTTTGTATCCCCTTAGAGC+TGG | 0.529127 | 4_4:-13911609 | Msa0670990:CDS |
| TTCCATAGTTCTTGTAAAGG+AGG | 0.535918 | 4_4:+13911264 | None:intergenic |
| AAATCAGAAGTGGCATACCC+TGG | 0.536084 | 4_4:-13909579 | Msa0670990:CDS |
| TAAAGGTGCAGATTATGCAT+TGG | 0.537919 | 4_4:-13909655 | Msa0670990:CDS |
| AACAACTATGTCTGGTCTAA+GGG | 0.538656 | 4_4:-13911243 | Msa0670990:intron |
| GGAAGCAAGAGGAAGAAGAG+GGG | 0.538727 | 4_4:+13912757 | None:intergenic |
| AGTGCTTACAAGTTTCCTGT+AGG | 0.545715 | 4_4:+13910890 | None:intergenic |
| GTGCTTACAAGTTTCCTGTA+GGG | 0.567383 | 4_4:+13910891 | None:intergenic |
| AGTGTCCGCAATATACAAGC+TGG | 0.570089 | 4_4:-13909850 | Msa0670990:CDS |
| AATCAGAAGTGGCATACCCT+GGG | 0.571637 | 4_4:-13909578 | Msa0670990:CDS |
| TTACAAGTTTCCTGTAGGGA+AGG | 0.575923 | 4_4:+13910895 | None:intergenic |
| TGTTCTTTGAGGGTTAATGT+TGG | 0.580694 | 4_4:+13910176 | None:intergenic |
| AATTCAATGGCAAATTCTGA+AGG | 0.587763 | 4_4:+13910213 | None:intergenic |
| TGACTGATGTTAACTTCCCA+GGG | 0.594284 | 4_4:+13909562 | None:intergenic |
| TGTGGGACTTGACACAGTAT+TGG | 0.599786 | 4_4:-13909821 | Msa0670990:intron |
| TCGGATCGAAATGGCGTACG+AGG | 0.602969 | 4_4:-13911799 | Msa0670990:exon |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 4_4:-13911089 | Msa0670990:intron |
| AAATGACATAAAATCAGAAG+TGG | 0.612856 | 4_4:-13909589 | Msa0670990:CDS |
| TATACAAGCTGGAAAACGTG+TGG | 0.625983 | 4_4:-13909839 | Msa0670990:CDS |
| AAGCTTCAAGAGCAATGCAA+AGG | 0.631578 | 4_4:+13912690 | None:intergenic |
| AAGATATTGAAGGAAGCAAG+AGG | 0.638493 | 4_4:+13912746 | None:intergenic |
| ATACAAGCTGGAAAACGTGT+GGG | 0.658378 | 4_4:-13909838 | Msa0670990:CDS |
| TGAAACCAGACCCTATTCTG+AGG | 0.671934 | 4_4:-13910932 | Msa0670990:CDS |
| TTTGCAAGGCCAGCTCTAAG+GGG | 0.679893 | 4_4:+13911600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTATTATAAAA+TGG | - | chr4_4:13911092-13911111 | Msa0670990:CDS | 0.0% |
| !! | TATTAATGAACAATATTAAA+GGG | + | chr4_4:13912611-13912630 | None:intergenic | 10.0% |
| !! | TTATTAATGAACAATATTAA+AGG | + | chr4_4:13912612-13912631 | None:intergenic | 10.0% |
| !! | AACATAAATAAATTTGTGTA+AGG | + | chr4_4:13910046-13910065 | None:intergenic | 15.0% |
| !! | TCATTCTCTTAAATTATTAT+TGG | + | chr4_4:13910643-13910662 | None:intergenic | 15.0% |
| !! | ATTATTGATCTTAGATTATA+TGG | - | chr4_4:13910786-13910805 | Msa0670990:intron | 15.0% |
| !!! | TTTTATTTCATTTTCAATTC+AGG | - | chr4_4:13910992-13911011 | Msa0670990:intron | 15.0% |
| !!! | ATATTTTAACATCAGTAAAT+TGG | + | chr4_4:13912052-13912071 | None:intergenic | 15.0% |
| !! | ATATCAACAATATTAAAGAA+TGG | + | chr4_4:13912163-13912182 | None:intergenic | 15.0% |
| !! | ATATGTTTCAATCAATAAAT+AGG | + | chr4_4:13912422-13912441 | None:intergenic | 15.0% |
| !!! | ATTTATTGATTGAAACATAT+AGG | - | chr4_4:13912422-13912441 | Msa0670990:intron | 15.0% |
| !! | CTTATTAAATTTCACTAACA+TGG | - | chr4_4:13909691-13909710 | Msa0670990:intron | 20.0% |
| !! | AACTCAGAGTTAAATATAAT+GGG | + | chr4_4:13909911-13909930 | None:intergenic | 20.0% |
| !! | AAACTCAGAGTTAAATATAA+TGG | + | chr4_4:13909912-13909931 | None:intergenic | 20.0% |
| !!! | TGTTGAATTTTTAAGGATTT+CGG | - | chr4_4:13910301-13910320 | Msa0670990:CDS | 20.0% |
| !! | TCTGTTCTTCAAAATATTAA+AGG | - | chr4_4:13910543-13910562 | Msa0670990:intron | 20.0% |
| !!! | ATATTTTACAGGAAATGATT+AGG | + | chr4_4:13910924-13910943 | None:intergenic | 20.0% |
| !!! | GGTATTGATTGTAAATATAA+TGG | - | chr4_4:13910968-13910987 | Msa0670990:intron | 20.0% |
| !! | AAAAAAAGGTAAAAGCTATT+TGG | + | chr4_4:13911566-13911585 | None:intergenic | 20.0% |
| !!! | TAATTTTCAGTTGTTTTTTG+AGG | - | chr4_4:13912244-13912263 | Msa0670990:intron | 20.0% |
| !!! | ACAAAAAAATTTAAGAGCAT+AGG | - | chr4_4:13912666-13912685 | Msa0670990:five_prime_UTR | 20.0% |
| !!! | CAAAAAAATTTAAGAGCATA+GGG | - | chr4_4:13912667-13912686 | Msa0670990:five_prime_UTR | 20.0% |
| !! | ATCAACTACATTTGAATTTA+GGG | + | chr4_4:13912699-13912718 | None:intergenic | 20.0% |
| !!! | AATGAATAAATTCTCCTTTT+TGG | - | chr4_4:13912767-13912786 | Msa0670990:five_prime_UTR | 20.0% |
| !! | CTATATAAATAATGCCAAAA+AGG | + | chr4_4:13912784-13912803 | None:intergenic | 20.0% |
| ! | AAGCAATACTAAGATATTGA+AGG | + | chr4_4:13909386-13909405 | None:intergenic | 25.0% |
| ! | GAAAAATGAGTGATTGTTAA+GGG | + | chr4_4:13909482-13909501 | None:intergenic | 25.0% |
| !!! | ATCACTCATTTTTCCATTTT+TGG | - | chr4_4:13909488-13909507 | Msa0670990:three_prime_UTR | 25.0% |
| !!! | TTCCATTTTTGGTAAGTTAA+TGG | - | chr4_4:13909499-13909518 | Msa0670990:three_prime_UTR | 25.0% |
| ! | AACCATTAACTTACCAAAAA+TGG | + | chr4_4:13909504-13909523 | None:intergenic | 25.0% |
| ! | ATGGTTGATTGAAAATCAAA+AGG | + | chr4_4:13909589-13909608 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTCAATCAACCA+TGG | - | chr4_4:13909588-13909607 | Msa0670990:CDS | 25.0% |
| ! | TACTAATCATAGGTTAATGT+TGG | + | chr4_4:13909639-13909658 | None:intergenic | 25.0% |
| ! | ATATTCATGGTACTAATCAT+AGG | + | chr4_4:13909649-13909668 | None:intergenic | 25.0% |
| ! | TATGATTAGTACCATGAATA+TGG | - | chr4_4:13909648-13909667 | Msa0670990:CDS | 25.0% |
| ! | AAATCTCAAAACCATATTCA+TGG | + | chr4_4:13909662-13909681 | None:intergenic | 25.0% |
| ! | ATTAAGAATCACCATTTCTT+TGG | - | chr4_4:13909728-13909747 | Msa0670990:intron | 25.0% |
| ! | GTATAGAATAACCAAAGAAA+TGG | + | chr4_4:13909742-13909761 | None:intergenic | 25.0% |
| !!! | GTGCATTTTTTTAGCAAAAA+AGG | + | chr4_4:13909850-13909869 | None:intergenic | 25.0% |
| ! | ATTGATCGTTTGATAAACTT+TGG | + | chr4_4:13909940-13909959 | None:intergenic | 25.0% |
| ! | TCAATTCATCTTTCAAAAGT+TGG | - | chr4_4:13909955-13909974 | Msa0670990:intron | 25.0% |
| !! | TGTTCTGTGTTGAATTTTTA+AGG | - | chr4_4:13910294-13910313 | Msa0670990:CDS | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | - | chr4_4:13910372-13910391 | Msa0670990:CDS | 25.0% |
| !!! | ATGTTATATGTTGTTTCTTG+AGG | - | chr4_4:13910734-13910753 | Msa0670990:intron | 25.0% |
| ! | AGGAAATGATTAGGAAATTA+AGG | + | chr4_4:13910915-13910934 | None:intergenic | 25.0% |
| !! | ACAATGGAAACATATTTTAC+AGG | + | chr4_4:13910935-13910954 | None:intergenic | 25.0% |
| ! | TCCATTGTTAAATTGTGAAA+AGG | - | chr4_4:13910947-13910966 | Msa0670990:CDS | 25.0% |
| !! | ACCTTTTCACAATTTAACAA+TGG | + | chr4_4:13910951-13910970 | None:intergenic | 25.0% |
| ! | AATAACAGTTTGAAAGTGAA+GGG | + | chr4_4:13911077-13911096 | None:intergenic | 25.0% |
| ! | AAATAACAGTTTGAAAGTGA+AGG | + | chr4_4:13911078-13911097 | None:intergenic | 25.0% |
| ! | CATTGAATAACTAATGTATC+TGG | + | chr4_4:13911394-13911413 | None:intergenic | 25.0% |
| ! | ACAAGAGAAACAATTAATAG+AGG | + | chr4_4:13911607-13911626 | None:intergenic | 25.0% |
| !!! | TTGCAAATAATTGGTGTTTT+TGG | + | chr4_4:13911885-13911904 | None:intergenic | 25.0% |
| !! | TTTTACTTACTGTTCTTTGA+GGG | + | chr4_4:13911956-13911975 | None:intergenic | 25.0% |
| !! | ATTTTACTTACTGTTCTTTG+AGG | + | chr4_4:13911957-13911976 | None:intergenic | 25.0% |
| ! | ATGTTAAAATATGAATCGTC+TGG | - | chr4_4:13912060-13912079 | Msa0670990:intron | 25.0% |
| !!! | TTGTTTGCTAACTTTTTCTA+TGG | - | chr4_4:13912212-13912231 | Msa0670990:intron | 25.0% |
| ! | ATTGATTGAAACATATAGGT+TGG | - | chr4_4:13912426-13912445 | Msa0670990:intron | 25.0% |
| ! | AAATGACATAAAATCAGAAG+TGG | - | chr4_4:13912530-13912549 | Msa0670990:intron | 25.0% |
| ! | CATCAACTACATTTGAATTT+AGG | + | chr4_4:13912700-13912719 | None:intergenic | 25.0% |
| GTTAAGGGAAAATGAGAAAA+GGG | + | chr4_4:13909467-13909486 | None:intergenic | 30.0% | |
| TGTTAAGGGAAAATGAGAAA+AGG | + | chr4_4:13909468-13909487 | None:intergenic | 30.0% | |
| GGAAAAATGAGTGATTGTTA+AGG | + | chr4_4:13909483-13909502 | None:intergenic | 30.0% | |
| GATTGAAAATCAAAAGGTGA+AGG | + | chr4_4:13909583-13909602 | None:intergenic | 30.0% | |
| !!! | TTTCAATGATTTTGAAGCCA+TGG | + | chr4_4:13909608-13909627 | None:intergenic | 30.0% |
| ACTAACATGGAACAAATGAT+TGG | - | chr4_4:13909704-13909723 | Msa0670990:intron | 30.0% | |
| ! | TATTTTACAACGATATCCGA+TGG | - | chr4_4:13909802-13909821 | Msa0670990:intron | 30.0% |
| !!! | TTCAAAAGTTGGTTTGCTTT+TGG | - | chr4_4:13909966-13909985 | Msa0670990:intron | 30.0% |
| ! | AATCCACATCATTTAGGATA+AGG | + | chr4_4:13910104-13910123 | None:intergenic | 30.0% |
| ! | AAGGATCATTTTGCATCTTT+TGG | - | chr4_4:13910146-13910165 | Msa0670990:intron | 30.0% |
| TCAGAATCTATTCATCAACA+TGG | + | chr4_4:13910214-13910233 | None:intergenic | 30.0% | |
| ! | TTTGAAGAACAGATTTTGCA+AGG | + | chr4_4:13910536-13910555 | None:intergenic | 30.0% |
| AATATAACATGTGTCAGTGT+CGG | - | chr4_4:13910672-13910691 | Msa0670990:intron | 30.0% | |
| TTGTTCCATAGTTCTTGTAA+AGG | + | chr4_4:13910861-13910880 | None:intergenic | 30.0% | |
| ! | TCATTTTCAATTCAGGCAAT+TGG | - | chr4_4:13910999-13911018 | Msa0670990:intron | 30.0% |
| TTGACTATGATGAATATCAC+AGG | - | chr4_4:13911030-13911049 | Msa0670990:intron | 30.0% | |
| !!! | ATTGTTTGCAGTTTTGTTCA+TGG | - | chr4_4:13911144-13911163 | Msa0670990:intron | 30.0% |
| ! | CGAGCAAAAAACAACTTTTT+AGG | - | chr4_4:13911331-13911350 | Msa0670990:intron | 30.0% |
| AAAACTACTAGACTTGGATT+AGG | + | chr4_4:13911861-13911880 | None:intergenic | 30.0% | |
| AATTCAATGGCAAATTCTGA+AGG | + | chr4_4:13911909-13911928 | None:intergenic | 30.0% | |
| TTCAGAATTTGCCATTGAAT+TGG | - | chr4_4:13911908-13911927 | Msa0670990:intron | 30.0% | |
| TGAGTTGTGACACATTAAAA+AGG | + | chr4_4:13912393-13912412 | None:intergenic | 30.0% | |
| !!! | ATGTCATTTTCCCATAATTC+AGG | + | chr4_4:13912519-13912538 | None:intergenic | 30.0% |
| AAGATATTGAAGGAAGCAAG+AGG | + | chr4_4:13909376-13909395 | None:intergenic | 35.0% | |
| ATCAAAAGGTGAAGGTTTGA+GGG | + | chr4_4:13909575-13909594 | None:intergenic | 35.0% | |
| AATCAAAAGGTGAAGGTTTG+AGG | + | chr4_4:13909576-13909595 | None:intergenic | 35.0% | |
| ! | AAGCCTTATCCTAAATGATG+TGG | - | chr4_4:13910098-13910117 | Msa0670990:intron | 35.0% |
| GATGCAAAATGATCCTTCAA+GGG | + | chr4_4:13910143-13910162 | None:intergenic | 35.0% | |
| AGATGCAAAATGATCCTTCA+AGG | + | chr4_4:13910144-13910163 | None:intergenic | 35.0% | |
| TTAAGGATTTCGGATCGAAA+TGG | - | chr4_4:13910311-13910330 | Msa0670990:CDS | 35.0% | |
| !! | TGATTGCCTTCTTTTTGGTA+AGG | - | chr4_4:13910377-13910396 | Msa0670990:CDS | 35.0% |
| TACAAGCCTTACCAAAAAGA+AGG | + | chr4_4:13910386-13910405 | None:intergenic | 35.0% | |
| CTTCAGATTGAATGTCTATC+TGG | + | chr4_4:13910709-13910728 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | - | chr4_4:13910799-13910818 | Msa0670990:intron | 35.0% | |
| AACCTCCTTTACAAGAACTA+TGG | - | chr4_4:13910853-13910872 | Msa0670990:intron | 35.0% | |
| TTCCATAGTTCTTGTAAAGG+AGG | + | chr4_4:13910858-13910877 | None:intergenic | 35.0% | |
| AACTATGGAACAACTATGTC+TGG | - | chr4_4:13910868-13910887 | Msa0670990:intron | 35.0% | |
| AACAACTATGTCTGGTCTAA+GGG | - | chr4_4:13910876-13910895 | Msa0670990:intron | 35.0% | |
| !! | TCTGGTTTCAAGTTCTCATA+AGG | + | chr4_4:13911177-13911196 | None:intergenic | 35.0% |
| GATTTACAATATTCTCCCTC+CGG | - | chr4_4:13911299-13911318 | Msa0670990:CDS | 35.0% | |
| ! | TTTTTGCTCGTAAATGTGAC+CGG | + | chr4_4:13911321-13911340 | None:intergenic | 35.0% |
| AGACAAAGTTCATGCTGTTA+AGG | - | chr4_4:13911653-13911672 | Msa0670990:intron | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | - | chr4_4:13911690-13911709 | Msa0670990:intron | 35.0% | |
| GAAACACTATTCTTGTGGAT+TGG | + | chr4_4:13911741-13911760 | None:intergenic | 35.0% | |
| CATCAGAAACACTATTCTTG+TGG | + | chr4_4:13911746-13911765 | None:intergenic | 35.0% | |
| GAAGATGACATTGAGTTTCT+AGG | - | chr4_4:13911768-13911787 | Msa0670990:CDS | 35.0% | |
| !! | TTGGATTAGGTTGAGCAAAA+TGG | + | chr4_4:13911848-13911867 | None:intergenic | 35.0% |
| TTTGGCAAAACTACTAGACT+TGG | + | chr4_4:13911867-13911886 | None:intergenic | 35.0% | |
| TCTGAAGGCTTGCAAATAAT+TGG | + | chr4_4:13911894-13911913 | None:intergenic | 35.0% | |
| AATCTTGAGAGCCAATTCAA+TGG | + | chr4_4:13911922-13911941 | None:intergenic | 35.0% | |
| ! | TGTTCTTTGAGGGTTAATGT+TGG | + | chr4_4:13911946-13911965 | None:intergenic | 35.0% |
| CGTGATATTACGACTATAGT+CGG | - | chr4_4:13912116-13912135 | Msa0670990:intron | 35.0% | |
| ! | GTTTTCCAGCTTGTATATTG+CGG | + | chr4_4:13912277-13912296 | None:intergenic | 35.0% |
| GGTACATCACAAAGAGTTAA+AGG | - | chr4_4:13912447-13912466 | Msa0670990:intron | 35.0% | |
| ! | TAAAGGTGCAGATTATGCAT+TGG | - | chr4_4:13912464-13912483 | Msa0670990:intron | 35.0% |
| !! | TGGAAAGCATTCACAATCTT+AGG | - | chr4_4:13912484-13912503 | Msa0670990:intron | 35.0% |
| !! | GGAAAGCATTCACAATCTTA+GGG | - | chr4_4:13912485-13912504 | Msa0670990:intron | 35.0% |
| AAGCTTCAAGAGCAATGCAA+AGG | + | chr4_4:13909432-13909451 | None:intergenic | 40.0% | |
| TTTAGCAAAAAAGGCCTCGA+GGG | + | chr4_4:13909841-13909860 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAAAAAGGCCTCG+AGG | + | chr4_4:13909842-13909861 | None:intergenic | 40.0% |
| !!! | AGTTGGTTTGCTTTTGGAAG+TGG | - | chr4_4:13909972-13909991 | Msa0670990:intron | 40.0% |
| TTGTGAAGTTTGTGAGTGGA+CGG | + | chr4_4:13910079-13910098 | None:intergenic | 40.0% | |
| GGGACTAATCCACATCATTT+AGG | + | chr4_4:13910110-13910129 | None:intergenic | 40.0% | |
| GTCGTGTCTGATATCTTTGT+CGG | + | chr4_4:13910605-13910624 | None:intergenic | 40.0% | |
| GAACAACTATGTCTGGTCTA+AGG | - | chr4_4:13910875-13910894 | Msa0670990:intron | 40.0% | |
| GCAACAGATTCCTCAGAATA+GGG | + | chr4_4:13911200-13911219 | None:intergenic | 40.0% | |
| AGCAACAGATTCCTCAGAAT+AGG | + | chr4_4:13911201-13911220 | None:intergenic | 40.0% | |
| TTACAAGTTTCCTGTAGGGA+AGG | + | chr4_4:13911227-13911246 | None:intergenic | 40.0% | |
| GTGCTTACAAGTTTCCTGTA+GGG | + | chr4_4:13911231-13911250 | None:intergenic | 40.0% | |
| AGTGCTTACAAGTTTCCTGT+AGG | + | chr4_4:13911232-13911251 | None:intergenic | 40.0% | |
| ! | GTTAAGGCACTAAGTAGACT+TGG | - | chr4_4:13911669-13911688 | Msa0670990:intron | 40.0% |
| TAAGTCAGAACCCTTATACG+AGG | + | chr4_4:13912087-13912106 | None:intergenic | 40.0% | |
| TATACAAGCTGGAAAACGTG+TGG | - | chr4_4:13912280-13912299 | Msa0670990:intron | 40.0% | |
| ATACAAGCTGGAAAACGTGT+GGG | - | chr4_4:13912281-13912300 | Msa0670990:intron | 40.0% | |
| TGACTGATGTTAACTTCCCA+GGG | + | chr4_4:13912560-13912579 | None:intergenic | 40.0% | |
| AGGAAGCAAGAGGAAGAAGA+GGG | + | chr4_4:13909366-13909385 | None:intergenic | 45.0% | |
| AAGGAAGCAAGAGGAAGAAG+AGG | + | chr4_4:13909367-13909386 | None:intergenic | 45.0% | |
| GGGACAGAGTTCAAATCCAT+CGG | + | chr4_4:13909821-13909840 | None:intergenic | 45.0% | |
| ! | GGCTTTGTGAAGTTTGTGAG+TGG | + | chr4_4:13910083-13910102 | None:intergenic | 45.0% |
| CCTTCAAGGGAGACAAGAAA+GGG | + | chr4_4:13910130-13910149 | None:intergenic | 45.0% | |
| TCCTTCAAGGGAGACAAGAA+AGG | + | chr4_4:13910131-13910150 | None:intergenic | 45.0% | |
| ACTTTGTATCCCCTTAGAGC+TGG | - | chr4_4:13910510-13910529 | Msa0670990:intron | 45.0% | |
| !! | TTTTGCAAGGCCAGCTCTAA+GGG | + | chr4_4:13910523-13910542 | None:intergenic | 45.0% |
| ! | ATTTTGCAAGGCCAGCTCTA+AGG | + | chr4_4:13910524-13910543 | None:intergenic | 45.0% |
| TGAAACCAGACCCTATTCTG+AGG | - | chr4_4:13911187-13911206 | Msa0670990:intron | 45.0% | |
| AGATTCCTCAGAATAGGGTC+TGG | + | chr4_4:13911195-13911214 | None:intergenic | 45.0% | |
| AATCGTCTGGTCCTCGTATA+AGG | - | chr4_4:13912073-13912092 | Msa0670990:intron | 45.0% | |
| ATCGTCTGGTCCTCGTATAA+GGG | - | chr4_4:13912074-13912093 | Msa0670990:intron | 45.0% | |
| AGTGTCCGCAATATACAAGC+TGG | - | chr4_4:13912269-13912288 | Msa0670990:intron | 45.0% | |
| TGTGGGACTTGACACAGTAT+TGG | - | chr4_4:13912298-13912317 | Msa0670990:intron | 45.0% | |
| GGAAGCTGTGCCTGAATTAT+GGG | - | chr4_4:13912506-13912525 | Msa0670990:intron | 45.0% | |
| AAATCAGAAGTGGCATACCC+TGG | - | chr4_4:13912540-13912559 | Msa0670990:intron | 45.0% | |
| AATCAGAAGTGGCATACCCT+GGG | - | chr4_4:13912541-13912560 | Msa0670990:intron | 45.0% | |
| GTGACTGATGTTAACTTCCC+AGG | + | chr4_4:13912561-13912580 | None:intergenic | 45.0% | |
| !!! | TAGTTTAAAATTTTAAAAAA+AGG | + | chr4_4:13911580-13911599 | None:intergenic | 5.0% |
| AGAGGGGGAGGAAATATGTG+AGG | + | chr4_4:13909349-13909368 | None:intergenic | 50.0% | |
| GAAGCAAGAGGAAGAAGAGG+GGG | + | chr4_4:13909364-13909383 | None:intergenic | 50.0% | |
| GGAAGCAAGAGGAAGAAGAG+GGG | + | chr4_4:13909365-13909384 | None:intergenic | 50.0% | |
| GATTTGAACTCTGTCCCTCG+AGG | - | chr4_4:13909824-13909843 | Msa0670990:CDS | 50.0% | |
| CCCTTTCTTGTCTCCCTTGA+AGG | - | chr4_4:13910127-13910146 | Msa0670990:intron | 50.0% | |
| ATGGCGTACGAGGATCGATT+CGG | - | chr4_4:13910330-13910349 | Msa0670990:CDS | 50.0% | |
| !! | TTTGCAAGGCCAGCTCTAAG+GGG | + | chr4_4:13910522-13910541 | None:intergenic | 50.0% |
| TGCTCGTAAATGTGACCGGA+GGG | + | chr4_4:13911317-13911336 | None:intergenic | 50.0% | |
| TTGCTCGTAAATGTGACCGG+AGG | + | chr4_4:13911318-13911337 | None:intergenic | 50.0% | |
| GGGAAGCTGTGCCTGAATTA+TGG | - | chr4_4:13912505-13912524 | Msa0670990:intron | 50.0% | |
| TCGGATCGAAATGGCGTACG+AGG | - | chr4_4:13910320-13910339 | Msa0670990:CDS | 55.0% | |
| TGTTGCTGAGCCTTCCCTAC+AGG | - | chr4_4:13911214-13911233 | Msa0670990:intron | 55.0% | |
| GCAAGAGGAAGAAGAGGGGG+AGG | + | chr4_4:13909361-13909380 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 13909329 | 13912812 | 13909329 | ID=Msa0670990;Name=Msa0670990 |
| chr4_4 | mRNA | 13909329 | 13912812 | 13909329 | ID=Msa0670990-mRNA-1;Parent=Msa0670990;Name=Msa0670990-mRNA-1;_AED=0.26;_eAED=0.26;_QI=195|1|1|1|0.87|0.77|9|225|296 |
| chr4_4 | exon | 13909329 | 13909697 | 13909329 | ID=Msa0670990-mRNA-1:exon:4256;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13909822 | 13909887 | 13909822 | ID=Msa0670990-mRNA-1:exon:4255;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13910176 | 13910502 | 13910176 | ID=Msa0670990-mRNA-1:exon:4254;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13910899 | 13910986 | 13910899 | ID=Msa0670990-mRNA-1:exon:4253;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13911090 | 13911127 | 13911090 | ID=Msa0670990-mRNA-1:exon:4252;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13911244 | 13911341 | 13911244 | ID=Msa0670990-mRNA-1:exon:4251;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13911577 | 13911642 | 13911577 | ID=Msa0670990-mRNA-1:exon:4250;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13911748 | 13911825 | 13911748 | ID=Msa0670990-mRNA-1:exon:4249;Parent=Msa0670990-mRNA-1 |
| chr4_4 | exon | 13912632 | 13912812 | 13912632 | ID=Msa0670990-mRNA-1:exon:4248;Parent=Msa0670990-mRNA-1 |
| chr4_4 | five_prime_UTR | 13912632 | 13912812 | 13912632 | ID=Msa0670990-mRNA-1:five_prime_utr;Parent=Msa0670990-mRNA-1 |
| chr4_4 | five_prime_UTR | 13911812 | 13911825 | 13911812 | ID=Msa0670990-mRNA-1:five_prime_utr;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13911748 | 13911811 | 13911748 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13911577 | 13911642 | 13911577 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13911244 | 13911341 | 13911244 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13911090 | 13911127 | 13911090 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13910899 | 13910986 | 13910899 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13910176 | 13910502 | 13910176 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13909822 | 13909887 | 13909822 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | CDS | 13909554 | 13909697 | 13909554 | ID=Msa0670990-mRNA-1:cds;Parent=Msa0670990-mRNA-1 |
| chr4_4 | three_prime_UTR | 13909329 | 13909553 | 13909329 | ID=Msa0670990-mRNA-1:three_prime_utr;Parent=Msa0670990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
