Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538110 | XP_003604253.1 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538110 | sp|Q42381|HLS1_ARATH | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.32e-125 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538110 | G7JEG0 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0538110 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0538110 | Msa0585780 | 0.975053 | 2.981980e-139 | -8.615850e-47 |
| Msa0538110 | Msa0663260 | 0.853350 | 2.532931e-61 | -8.615850e-47 |
| Msa0538110 | Msa0663640 | 0.927229 | 1.572115e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538110 | MtrunA17_Chr4g0001411 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Msa0538110 | MtrunA17_Chr4g0053961 | 48.551 | 414 | 176 | 9 | 23 | 408 | 7 | 411 | 1.27e-124 | 366 |
| Msa0538110 | MtrunA17_Chr5g0401351 | 47.277 | 404 | 186 | 7 | 23 | 408 | 9 | 403 | 1.79e-121 | 358 |
| Msa0538110 | MtrunA17_Chr3g0105631 | 47.395 | 403 | 183 | 13 | 18 | 407 | 1 | 387 | 3.19e-108 | 323 |
| Msa0538110 | MtrunA17_Chr4g0068331 | 35.381 | 407 | 238 | 10 | 20 | 408 | 8 | 407 | 7.07e-68 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538110 | AT4G37580.1 | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.37e-126 | 370 |
| Msa0538110 | AT2G23060.1 | 46.875 | 416 | 184 | 7 | 23 | 408 | 5 | 413 | 6.04e-125 | 367 |
| Msa0538110 | AT5G67430.1 | 43.250 | 400 | 190 | 10 | 23 | 407 | 8 | 385 | 2.40e-104 | 314 |
| Msa0538110 | AT4G37580.2 | 46.571 | 350 | 158 | 6 | 81 | 408 | 4 | 346 | 1.07e-101 | 306 |
| Msa0538110 | AT5G67430.2 | 42.388 | 335 | 163 | 8 | 88 | 407 | 1 | 320 | 1.06e-84 | 261 |
| Msa0538110 | AT2G23060.2 | 44.406 | 286 | 144 | 5 | 131 | 408 | 1 | 279 | 4.27e-81 | 251 |
| Msa0538110 | AT2G30090.1 | 39.695 | 393 | 205 | 11 | 25 | 407 | 15 | 385 | 5.85e-79 | 249 |
Find 86 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAATTTGGGCACATTTA+TGG | 0.122350 | 4_1:-17187840 | Msa0538110:CDS |
| TTTGTCAAACAAACTTAATT+TGG | 0.149236 | 4_1:-17187852 | Msa0538110:CDS |
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4_1:-17189195 | Msa0538110:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4_1:-17187534 | Msa0538110:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4_1:-17189677 | Msa0538110:CDS |
| GTGTTCAAATTGCAAGTTAA+AGG | 0.270012 | 4_1:-17187725 | Msa0538110:CDS |
| GAAGAGTGGTGCAAACAAAA+AGG | 0.293479 | 4_1:-17188115 | Msa0538110:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4_1:+17189065 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4_1:-17187439 | Msa0538110:CDS |
| CGCCTACCATCGCGCTTGGC+CGG | 0.331091 | 4_1:-17187935 | Msa0538110:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4_1:-17189163 | Msa0538110:CDS |
| TTGTCAAACAAACTTAATTT+GGG | 0.336499 | 4_1:-17187851 | Msa0538110:CDS |
| TTTGGCACATACAGGAGATT+TGG | 0.340135 | 4_1:-17188166 | Msa0538110:intron |
| AGGGGCTAAGTATGCATATA+TGG | 0.342146 | 4_1:-17188095 | Msa0538110:CDS |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4_1:+17189796 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4_1:-17187602 | Msa0538110:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4_1:+17187458 | None:intergenic |
| AATGTGAGTACTCAAAATTC+AGG | 0.364355 | 4_1:-17188027 | Msa0538110:CDS |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4_1:-17187512 | Msa0538110:CDS |
| TTTGTGAACAAATTGATTGA+TGG | 0.374776 | 4_1:+17188052 | None:intergenic |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4_1:-17189174 | Msa0538110:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4_1:+17189066 | None:intergenic |
| AAAATCAAATCTATGTCTCT+TGG | 0.388928 | 4_1:+17187872 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4_1:-17189676 | Msa0538110:CDS |
| GCCTACCATCGCGCTTGGCC+GGG | 0.411093 | 4_1:-17187934 | Msa0538110:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4_1:-17189164 | Msa0538110:CDS |
| ATTCTGCATTGGCAAACATA+TGG | 0.414829 | 4_1:+17187900 | None:intergenic |
| AAATCAAATCTATGTCTCTT+GGG | 0.426207 | 4_1:+17187873 | None:intergenic |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4_1:-17189825 | Msa0538110:CDS |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4_1:-17189715 | Msa0538110:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4_1:-17187511 | Msa0538110:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4_1:-17189629 | Msa0538110:intron |
| ACACTTAATATTGCATAGCT+TGG | 0.451887 | 4_1:+17187764 | None:intergenic |
| ACAGCAATGTTTGTGCTGAT+TGG | 0.452904 | 4_1:+17187962 | None:intergenic |
| CTTAATATTGCATAGCTTGG+AGG | 0.465057 | 4_1:+17187767 | None:intergenic |
| AAGTGACGAATTCTGCATAT+AGG | 0.481918 | 4_1:+17189649 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4_1:-17189186 | Msa0538110:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4_1:-17187551 | Msa0538110:CDS |
| CCTTCGCCTACCATCGCGCT+TGG | 0.489542 | 4_1:-17187939 | Msa0538110:CDS |
| ACACAACATGCATGTACAAA+TGG | 0.489795 | 4_1:+17187695 | None:intergenic |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4_1:+17187605 | None:intergenic |
| GGCTTGTAGTGAGCATGAAC+AGG | 0.497937 | 4_1:+17187983 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4_1:-17187521 | Msa0538110:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4_1:-17187438 | Msa0538110:CDS |
| TGCATATAGGATCACCCAAT+AGG | 0.510258 | 4_1:+17189662 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4_1:-17187393 | Msa0538110:CDS |
| TGTAGTGAGCATGAACAGGC+TGG | 0.531502 | 4_1:+17187987 | None:intergenic |
| TTAATATTGCATAGCTTGGA+GGG | 0.532003 | 4_1:+17187768 | None:intergenic |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4_1:-17187484 | Msa0538110:CDS |
| CATATGGTTGTATGTCGGCC+CGG | 0.545386 | 4_1:+17187916 | None:intergenic |
| GTCGGCCCGGCCAAGCGCGA+TGG | 0.548720 | 4_1:+17187929 | None:intergenic |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4_1:-17187432 | Msa0538110:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4_1:+17187346 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4_1:-17189706 | Msa0538110:CDS |
| ATGAATGTATGCCATGGCTA+AGG | 0.560501 | 4_1:-17187655 | Msa0538110:CDS |
| TAGTTGAACATTTAGAAGAG+TGG | 0.560980 | 4_1:-17188129 | Msa0538110:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4_1:-17187510 | Msa0538110:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4_1:+17187441 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4_1:-17187578 | Msa0538110:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4_1:-17189719 | Msa0538110:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4_1:-17187483 | Msa0538110:CDS |
| GCTATGCAATATTAAGTGTG+TGG | 0.597858 | 4_1:-17187760 | Msa0538110:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4_1:+17187440 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4_1:+17189679 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4_1:-17187451 | Msa0538110:CDS |
| GCCCGGCCAAGCGCGATGGT+AGG | 0.614800 | 4_1:+17187933 | None:intergenic |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4_1:-17187587 | Msa0538110:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4_1:+17187347 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4_1:+17187459 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4_1:+17187487 | None:intergenic |
| AATGAAGGTAACCTTAGCCA+TGG | 0.631481 | 4_1:+17187644 | None:intergenic |
| TTTGTACATGCATGTTGTGT+AGG | 0.632512 | 4_1:-17187692 | Msa0538110:CDS |
| TATTAGATGAATGTATGCCA+TGG | 0.633115 | 4_1:-17187661 | Msa0538110:CDS |
| GCAAACATATGGTTGTATGT+CGG | 0.634118 | 4_1:+17187911 | None:intergenic |
| CCAAGCGCGATGGTAGGCGA+AGG | 0.634299 | 4_1:+17187939 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4_1:-17189162 | Msa0538110:CDS |
| ACATACAGGAGATTTGGCAT+TGG | 0.644852 | 4_1:-17188160 | Msa0538110:intron |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4_1:-17187591 | Msa0538110:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4_1:-17189137 | Msa0538110:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4_1:-17187454 | Msa0538110:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4_1:-17189077 | Msa0538110:intron |
| TGATGAAGAGAAACACAAAG+TGG | 0.670036 | 4_1:-17189749 | Msa0538110:CDS |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4_1:-17187424 | Msa0538110:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4_1:-17189138 | Msa0538110:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4_1:-17187588 | Msa0538110:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4_1:-17187518 | Msa0538110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATGCTTTTAGTT+AGG | + | chr4_1:17188121-17188140 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | - | chr4_1:17188385-17188404 | Msa0538110:intron | 15.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | + | chr4_1:17188686-17188705 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | + | chr4_1:17187619-17187638 | None:intergenic | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | - | chr4_1:17188322-17188341 | Msa0538110:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | - | chr4_1:17188323-17188342 | Msa0538110:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | + | chr4_1:17188331-17188350 | None:intergenic | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | - | chr4_1:17188505-17188524 | Msa0538110:intron | 20.0% |
| !!! | TCAAGACTTTTCTTATTTTA+CGG | + | chr4_1:17188768-17188787 | None:intergenic | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | - | chr4_1:17188952-17188971 | Msa0538110:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | - | chr4_1:17189284-17189303 | Msa0538110:intron | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | - | chr4_1:17189285-17189304 | Msa0538110:intron | 20.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | - | chr4_1:17187928-17187947 | Msa0538110:CDS | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | - | chr4_1:17188034-17188053 | Msa0538110:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | - | chr4_1:17188350-17188369 | Msa0538110:intron | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | + | chr4_1:17188493-17188512 | None:intergenic | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | - | chr4_1:17188510-17188529 | Msa0538110:intron | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | + | chr4_1:17188634-17188653 | None:intergenic | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | - | chr4_1:17188714-17188733 | Msa0538110:intron | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | - | chr4_1:17188884-17188903 | Msa0538110:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | + | chr4_1:17189087-17189106 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | + | chr4_1:17189266-17189285 | None:intergenic | 25.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | + | chr4_1:17189267-17189286 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | + | chr4_1:17189327-17189346 | None:intergenic | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | + | chr4_1:17189338-17189357 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | - | chr4_1:17189339-17189358 | Msa0538110:intron | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | + | chr4_1:17189510-17189529 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | - | chr4_1:17189508-17189527 | Msa0538110:intron | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | + | chr4_1:17189534-17189553 | None:intergenic | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | - | chr4_1:17189534-17189553 | Msa0538110:intron | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | - | chr4_1:17189602-17189621 | Msa0538110:intron | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | - | chr4_1:17189765-17189784 | Msa0538110:CDS | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | + | chr4_1:17189817-17189836 | None:intergenic | 25.0% |
| CTTTCAATTACATGTTATGC+TGG | - | chr4_1:17187507-17187526 | Msa0538110:CDS | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | + | chr4_1:17187764-17187783 | None:intergenic | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | + | chr4_1:17187779-17187798 | None:intergenic | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | + | chr4_1:17187876-17187895 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | - | chr4_1:17187897-17187916 | Msa0538110:CDS | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | + | chr4_1:17188073-17188092 | None:intergenic | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | + | chr4_1:17188074-17188093 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | + | chr4_1:17188244-17188263 | None:intergenic | 30.0% |
| CAACTTTCTCATACTTCATT+TGG | - | chr4_1:17188551-17188570 | Msa0538110:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | + | chr4_1:17188579-17188598 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | - | chr4_1:17188579-17188598 | Msa0538110:intron | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | - | chr4_1:17188602-17188621 | Msa0538110:intron | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | + | chr4_1:17188723-17188742 | None:intergenic | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | + | chr4_1:17188791-17188810 | None:intergenic | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | - | chr4_1:17188866-17188885 | Msa0538110:intron | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | - | chr4_1:17188914-17188933 | Msa0538110:intron | 30.0% |
| TCCAAAGTTGTTCAAAAAGA+AGG | + | chr4_1:17188918-17188937 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGAACAACTTTGG+AGG | - | chr4_1:17188917-17188936 | Msa0538110:intron | 30.0% |
| TAGTTGAACATTTAGAAGAG+TGG | - | chr4_1:17189007-17189026 | Msa0538110:intron | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | - | chr4_1:17189109-17189128 | Msa0538110:CDS | 30.0% | |
| ! | ACTTAATTTGGGCACATTTA+TGG | - | chr4_1:17189296-17189315 | Msa0538110:intron | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | + | chr4_1:17189322-17189341 | None:intergenic | 30.0% |
| TTAATATTGCATAGCTTGGA+GGG | + | chr4_1:17189371-17189390 | None:intergenic | 30.0% | |
| ACACTTAATATTGCATAGCT+TGG | + | chr4_1:17189375-17189394 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | - | chr4_1:17189411-17189430 | Msa0538110:intron | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | - | chr4_1:17189475-17189494 | Msa0538110:intron | 30.0% | |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | - | chr4_1:17189517-17189536 | Msa0538110:intron | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | - | chr4_1:17189545-17189564 | Msa0538110:intron | 30.0% |
| CAACTTATGAAGTCATTATG+TGG | - | chr4_1:17189585-17189604 | Msa0538110:intron | 30.0% | |
| AAGATAATTTCCTCCAATGT+GGG | + | chr4_1:17189698-17189717 | None:intergenic | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | - | chr4_1:17189698-17189717 | Msa0538110:CDS | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | + | chr4_1:17189792-17189811 | None:intergenic | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | + | chr4_1:17189793-17189812 | None:intergenic | 30.0% | |
| GCAAAAACCATCATCAAAGA+AGG | - | chr4_1:17187333-17187352 | Msa0538110:CDS | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | + | chr4_1:17187343-17187362 | None:intergenic | 35.0% | |
| TGATGAAGAGAAACACAAAG+TGG | - | chr4_1:17187387-17187406 | Msa0538110:CDS | 35.0% | |
| CAAAGTGGCAGTAGAAAAAT+TGG | - | chr4_1:17187402-17187421 | Msa0538110:CDS | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | - | chr4_1:17187407-17187426 | Msa0538110:CDS | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | - | chr4_1:17187417-17187436 | Msa0538110:CDS | 35.0% |
| AATAGGTCAGTAACAAGAGA+AGG | + | chr4_1:17187460-17187479 | None:intergenic | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | - | chr4_1:17187459-17187478 | Msa0538110:CDS | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | - | chr4_1:17187460-17187479 | Msa0538110:CDS | 35.0% | |
| AAGTGACGAATTCTGCATAT+AGG | + | chr4_1:17187490-17187509 | None:intergenic | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | + | chr4_1:17187874-17187893 | None:intergenic | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | + | chr4_1:17187875-17187894 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | - | chr4_1:17187973-17187992 | Msa0538110:CDS | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | - | chr4_1:17187998-17188017 | Msa0538110:CDS | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | - | chr4_1:17187999-17188018 | Msa0538110:CDS | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | - | chr4_1:17188283-17188302 | Msa0538110:intron | 35.0% | |
| AACAATAGAGAAAGAAGTGG+TGG | - | chr4_1:17188353-17188372 | Msa0538110:intron | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | - | chr4_1:17188354-17188373 | Msa0538110:intron | 35.0% | |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | + | chr4_1:17188606-17188625 | None:intergenic | 35.0% |
| ATAGGATGATGCCTAAAGTA+AGG | + | chr4_1:17188616-17188635 | None:intergenic | 35.0% | |
| ! | GAGAATTCGAGTTTGAATCA+TGG | + | chr4_1:17188805-17188824 | None:intergenic | 35.0% |
| AAGAGTGGTGCAAACAAAAA+GGG | - | chr4_1:17189022-17189041 | Msa0538110:intron | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | + | chr4_1:17189228-17189247 | None:intergenic | 35.0% | |
| ! | ATTCTGCATTGGCAAACATA+TGG | + | chr4_1:17189239-17189258 | None:intergenic | 35.0% |
| TCTTGGGAAAAATTCTGCAT+TGG | + | chr4_1:17189250-17189269 | None:intergenic | 35.0% | |
| !!! | GGAGGGAAAATACCATTTTT+TGG | + | chr4_1:17189354-17189373 | None:intergenic | 35.0% |
| CTTAATATTGCATAGCTTGG+AGG | + | chr4_1:17189372-17189391 | None:intergenic | 35.0% | |
| GCTATGCAATATTAAGTGTG+TGG | - | chr4_1:17189376-17189395 | Msa0538110:intron | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | + | chr4_1:17189444-17189463 | None:intergenic | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | - | chr4_1:17189444-17189463 | Msa0538110:intron | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | + | chr4_1:17189519-17189538 | None:intergenic | 35.0% | |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | - | chr4_1:17189516-17189535 | Msa0538110:intron | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | - | chr4_1:17189548-17189567 | Msa0538110:intron | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | - | chr4_1:17189549-17189568 | Msa0538110:intron | 35.0% |
| CATAATATGGCTAGAGATGA+TGG | - | chr4_1:17189615-17189634 | Msa0538110:intron | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | + | chr4_1:17189699-17189718 | None:intergenic | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | - | chr4_1:17189697-17189716 | Msa0538110:CDS | 35.0% | |
| TGAAGATAGCAGCTGAAACT+TGG | - | chr4_1:17187311-17187330 | Msa0538110:CDS | 40.0% | |
| TGCATATAGGATCACCCAAT+AGG | + | chr4_1:17187477-17187496 | None:intergenic | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | - | chr4_1:17187941-17187960 | Msa0538110:CDS | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | + | chr4_1:17187945-17187964 | None:intergenic | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | - | chr4_1:17187950-17187969 | Msa0538110:CDS | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | - | chr4_1:17187972-17187991 | Msa0538110:CDS | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | - | chr4_1:17187974-17187993 | Msa0538110:CDS | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | - | chr4_1:17188355-17188374 | Msa0538110:intron | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | - | chr4_1:17188356-17188375 | Msa0538110:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | - | chr4_1:17188962-17188981 | Msa0538110:intron | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | - | chr4_1:17188970-17188989 | Msa0538110:intron | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | - | chr4_1:17188976-17188995 | Msa0538110:intron | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | - | chr4_1:17189021-17189040 | Msa0538110:intron | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | - | chr4_1:17189023-17189042 | Msa0538110:intron | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | - | chr4_1:17189041-17189060 | Msa0538110:intron | 40.0% | |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | + | chr4_1:17189177-17189196 | None:intergenic | 40.0% |
| ATGAATGTATGCCATGGCTA+AGG | - | chr4_1:17189481-17189500 | Msa0538110:intron | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | + | chr4_1:17189495-17189514 | None:intergenic | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | - | chr4_1:17189558-17189577 | Msa0538110:intron | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | - | chr4_1:17189618-17189637 | Msa0538110:intron | 40.0% |
| TTGACTCACTTCAGTCACAA+TGG | + | chr4_1:17189652-17189671 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | - | chr4_1:17189652-17189671 | Msa0538110:CDS | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | - | chr4_1:17189653-17189672 | Msa0538110:CDS | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | - | chr4_1:17189682-17189701 | Msa0538110:CDS | 40.0% | |
| AAAAATGTGGACCCTCAGAT+TGG | - | chr4_1:17189778-17189797 | Msa0538110:CDS | 40.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | - | chr4_1:17187421-17187440 | Msa0538110:CDS | 45.0% |
| CTTTGTGAGGTTGGACAAAG+AGG | - | chr4_1:17187430-17187449 | Msa0538110:CDS | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | + | chr4_1:17187663-17187682 | None:intergenic | 45.0% | |
| AGACACGGGGAGAAAATCAT+CGG | + | chr4_1:17187861-17187880 | None:intergenic | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | - | chr4_1:17187962-17187981 | Msa0538110:CDS | 45.0% | |
| !! | CTAGAGATGATGGTGGTTGT+GGG | - | chr4_1:17189625-17189644 | Msa0538110:intron | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | - | chr4_1:17189626-17189645 | Msa0538110:intron | 45.0% |
| GTGGGATCACTTCTCTAACT+GGG | + | chr4_1:17189680-17189699 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | + | chr4_1:17189681-17189700 | None:intergenic | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | - | chr4_1:17189704-17189723 | Msa0538110:CDS | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | - | chr4_1:17189743-17189762 | Msa0538110:CDS | 45.0% | |
| !! | AAAAAAATAATTAATAGTTT+AGG | - | chr4_1:17188133-17188152 | Msa0538110:CDS | 5.0% |
| TCAGAGTCTCTCCCAAACAC+AGG | - | chr4_1:17188059-17188078 | Msa0538110:CDS | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | + | chr4_1:17189152-17189171 | None:intergenic | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | + | chr4_1:17189156-17189175 | None:intergenic | 50.0% | |
| CATATGGTTGTATGTCGGCC+CGG | + | chr4_1:17189223-17189242 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | - | chr4_1:17189624-17189643 | Msa0538110:intron | 50.0% |
| GAGAAGTGATCCCACATTGG+AGG | - | chr4_1:17189685-17189704 | Msa0538110:CDS | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | - | chr4_1:17189712-17189731 | Msa0538110:CDS | 50.0% | |
| CCAAGCGCGATGGTAGGCGA+AGG | + | chr4_1:17189200-17189219 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | - | chr4_1:17189197-17189216 | Msa0538110:intron | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | - | chr4_1:17189201-17189220 | Msa0538110:intron | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | - | chr4_1:17189202-17189221 | Msa0538110:intron | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | + | chr4_1:17189206-17189225 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | + | chr4_1:17189210-17189229 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17187304 | 17189854 | 17187304 | ID=Msa0538110;Name=Msa0538110 |
| chr4_1 | mRNA | 17187304 | 17189854 | 17187304 | ID=Msa0538110-mRNA-1;Parent=Msa0538110;Name=Msa0538110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|408 |
| chr4_1 | exon | 17189630 | 17189854 | 17189630 | ID=Msa0538110-mRNA-1:exon:5143;Parent=Msa0538110-mRNA-1 |
| chr4_1 | exon | 17189078 | 17189208 | 17189078 | ID=Msa0538110-mRNA-1:exon:5142;Parent=Msa0538110-mRNA-1 |
| chr4_1 | exon | 17187304 | 17188174 | 17187304 | ID=Msa0538110-mRNA-1:exon:5141;Parent=Msa0538110-mRNA-1 |
| chr4_1 | CDS | 17189630 | 17189854 | 17189630 | ID=Msa0538110-mRNA-1:cds;Parent=Msa0538110-mRNA-1 |
| chr4_1 | CDS | 17189078 | 17189208 | 17189078 | ID=Msa0538110-mRNA-1:cds;Parent=Msa0538110-mRNA-1 |
| chr4_1 | CDS | 17187304 | 17188174 | 17187304 | ID=Msa0538110-mRNA-1:cds;Parent=Msa0538110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
