Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663640 | XP_003604253.1 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663640 | sp|Q42381|HLS1_ARATH | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.32e-125 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663640 | G7JEG0 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0663640 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663260 | Msa0663640 | 0.805546 | 1.266773e-49 | -8.615850e-47 |
| Msa0538110 | Msa0663640 | 0.927229 | 1.572115e-91 | -8.615850e-47 |
| Msa0585780 | Msa0663640 | 0.913514 | 5.632506e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663640 | MtrunA17_Chr4g0001411 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Msa0663640 | MtrunA17_Chr4g0053961 | 48.551 | 414 | 176 | 9 | 23 | 408 | 7 | 411 | 1.27e-124 | 366 |
| Msa0663640 | MtrunA17_Chr5g0401351 | 47.277 | 404 | 186 | 7 | 23 | 408 | 9 | 403 | 1.79e-121 | 358 |
| Msa0663640 | MtrunA17_Chr3g0105631 | 47.395 | 403 | 183 | 13 | 18 | 407 | 1 | 387 | 3.19e-108 | 323 |
| Msa0663640 | MtrunA17_Chr4g0068331 | 35.381 | 407 | 238 | 10 | 20 | 408 | 8 | 407 | 7.07e-68 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663640 | AT4G37580.1 | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.37e-126 | 370 |
| Msa0663640 | AT2G23060.1 | 46.875 | 416 | 184 | 7 | 23 | 408 | 5 | 413 | 6.04e-125 | 367 |
| Msa0663640 | AT5G67430.1 | 43.250 | 400 | 190 | 10 | 23 | 407 | 8 | 385 | 2.40e-104 | 314 |
| Msa0663640 | AT4G37580.2 | 46.571 | 350 | 158 | 6 | 81 | 408 | 4 | 346 | 1.07e-101 | 306 |
| Msa0663640 | AT5G67430.2 | 42.388 | 335 | 163 | 8 | 88 | 407 | 1 | 320 | 1.06e-84 | 261 |
| Msa0663640 | AT2G23060.2 | 44.406 | 286 | 144 | 5 | 131 | 408 | 1 | 279 | 4.27e-81 | 251 |
| Msa0663640 | AT2G30090.1 | 39.695 | 393 | 205 | 11 | 25 | 407 | 15 | 385 | 5.85e-79 | 249 |
Find 86 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAATTTGGGCACATTTA+TGG | 0.122350 | 4_4:+2557260 | Msa0663640:CDS |
| TTTGTCAAACAAACTTAATT+TGG | 0.149236 | 4_4:+2557248 | Msa0663640:CDS |
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4_4:+2555904 | Msa0663640:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4_4:+2557566 | Msa0663640:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4_4:+2555422 | Msa0663640:CDS |
| GTGTTCAAATTGCAAGTTAA+AGG | 0.270012 | 4_4:+2557375 | Msa0663640:CDS |
| GAAGAGTGGTGCAAACAAAA+AGG | 0.293479 | 4_4:+2556985 | Msa0663640:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4_4:-2556034 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4_4:+2557661 | Msa0663640:CDS |
| CGCCTACCATCGCGCTTGGC+CGG | 0.331091 | 4_4:+2557165 | Msa0663640:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4_4:+2555936 | Msa0663640:CDS |
| TTGTCAAACAAACTTAATTT+GGG | 0.336499 | 4_4:+2557249 | Msa0663640:CDS |
| TTTGGCACATACAGGAGATT+TGG | 0.340135 | 4_4:+2556934 | Msa0663640:intron |
| AGGGGCTAAGTATGCATATA+TGG | 0.342146 | 4_4:+2557005 | Msa0663640:CDS |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4_4:-2555303 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4_4:+2557498 | Msa0663640:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4_4:-2557642 | None:intergenic |
| AATGTGAGTACTCAAAATTC+AGG | 0.364355 | 4_4:+2557073 | Msa0663640:CDS |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4_4:+2557588 | Msa0663640:CDS |
| TTTGTGAACAAATTGATTGA+TGG | 0.374776 | 4_4:-2557048 | None:intergenic |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4_4:+2555925 | Msa0663640:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4_4:-2556033 | None:intergenic |
| AAAATCAAATCTATGTCTCT+TGG | 0.388928 | 4_4:-2557228 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4_4:+2555423 | Msa0663640:CDS |
| GCCTACCATCGCGCTTGGCC+GGG | 0.411093 | 4_4:+2557166 | Msa0663640:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4_4:+2555935 | Msa0663640:CDS |
| ATTCTGCATTGGCAAACATA+TGG | 0.414829 | 4_4:-2557200 | None:intergenic |
| AAATCAAATCTATGTCTCTT+GGG | 0.426207 | 4_4:-2557227 | None:intergenic |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4_4:+2555274 | Msa0663640:CDS |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4_4:+2555384 | Msa0663640:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4_4:+2557589 | Msa0663640:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4_4:+2555470 | Msa0663640:CDS |
| ACACTTAATATTGCATAGCT+TGG | 0.451887 | 4_4:-2557336 | None:intergenic |
| ACAGCAATGTTTGTGCTGAT+TGG | 0.452904 | 4_4:-2557138 | None:intergenic |
| CTTAATATTGCATAGCTTGG+AGG | 0.465057 | 4_4:-2557333 | None:intergenic |
| AAGTGACGAATTCTGCATAT+AGG | 0.481918 | 4_4:-2555450 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4_4:+2555913 | Msa0663640:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4_4:+2557549 | Msa0663640:CDS |
| CCTTCGCCTACCATCGCGCT+TGG | 0.489542 | 4_4:+2557161 | Msa0663640:CDS |
| ACACAACATGCATGTACAAA+TGG | 0.489795 | 4_4:-2557405 | None:intergenic |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4_4:-2557495 | None:intergenic |
| GGCTTGTAGTGAGCATGAAC+AGG | 0.497937 | 4_4:-2557117 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4_4:+2557579 | Msa0663640:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4_4:+2557662 | Msa0663640:CDS |
| TGCATATAGGATCACCCAAT+AGG | 0.510258 | 4_4:-2555437 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4_4:+2557707 | Msa0663640:CDS |
| TGTAGTGAGCATGAACAGGC+TGG | 0.531502 | 4_4:-2557113 | None:intergenic |
| TTAATATTGCATAGCTTGGA+GGG | 0.532003 | 4_4:-2557332 | None:intergenic |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4_4:+2557616 | Msa0663640:CDS |
| CATATGGTTGTATGTCGGCC+CGG | 0.545386 | 4_4:-2557184 | None:intergenic |
| GTCGGCCCGGCCAAGCGCGA+TGG | 0.548720 | 4_4:-2557171 | None:intergenic |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4_4:+2557668 | Msa0663640:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4_4:-2557754 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4_4:+2555393 | Msa0663640:CDS |
| ATGAATGTATGCCATGGCTA+AGG | 0.560501 | 4_4:+2557445 | Msa0663640:CDS |
| TAGTTGAACATTTAGAAGAG+TGG | 0.560980 | 4_4:+2556971 | Msa0663640:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4_4:+2557590 | Msa0663640:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4_4:-2557659 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4_4:+2557522 | Msa0663640:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4_4:+2555380 | Msa0663640:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4_4:+2557617 | Msa0663640:CDS |
| GCTATGCAATATTAAGTGTG+TGG | 0.597858 | 4_4:+2557340 | Msa0663640:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4_4:-2557660 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4_4:-2555420 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4_4:+2557649 | Msa0663640:CDS |
| GCCCGGCCAAGCGCGATGGT+AGG | 0.614800 | 4_4:-2557167 | None:intergenic |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4_4:+2557513 | Msa0663640:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4_4:-2557753 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4_4:-2557641 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4_4:-2557613 | None:intergenic |
| AATGAAGGTAACCTTAGCCA+TGG | 0.631481 | 4_4:-2557456 | None:intergenic |
| TTTGTACATGCATGTTGTGT+AGG | 0.632512 | 4_4:+2557408 | Msa0663640:CDS |
| TATTAGATGAATGTATGCCA+TGG | 0.633115 | 4_4:+2557439 | Msa0663640:CDS |
| GCAAACATATGGTTGTATGT+CGG | 0.634118 | 4_4:-2557189 | None:intergenic |
| CCAAGCGCGATGGTAGGCGA+AGG | 0.634299 | 4_4:-2557161 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4_4:+2555937 | Msa0663640:CDS |
| ACATACAGGAGATTTGGCAT+TGG | 0.644852 | 4_4:+2556940 | Msa0663640:intron |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4_4:+2557509 | Msa0663640:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4_4:+2555962 | Msa0663640:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4_4:+2557646 | Msa0663640:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4_4:+2556022 | Msa0663640:CDS |
| TGATGAAGAGAAACACAAAG+TGG | 0.670036 | 4_4:+2555350 | Msa0663640:CDS |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4_4:+2557676 | Msa0663640:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4_4:+2555961 | Msa0663640:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4_4:+2557512 | Msa0663640:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4_4:+2557582 | Msa0663640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATGCTTTTAGTT+AGG | - | chr4_4:2556084-2556103 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | + | chr4_4:2556348-2556367 | Msa0663640:intron | 15.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | - | chr4_4:2556649-2556668 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | - | chr4_4:2555582-2555601 | None:intergenic | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | + | chr4_4:2556285-2556304 | Msa0663640:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | + | chr4_4:2556286-2556305 | Msa0663640:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | - | chr4_4:2556294-2556313 | None:intergenic | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | + | chr4_4:2556468-2556487 | Msa0663640:intron | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | + | chr4_4:2556916-2556935 | Msa0663640:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | + | chr4_4:2557248-2557267 | Msa0663640:CDS | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | + | chr4_4:2557249-2557268 | Msa0663640:CDS | 20.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | + | chr4_4:2555891-2555910 | Msa0663640:intron | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | + | chr4_4:2555997-2556016 | Msa0663640:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | + | chr4_4:2556313-2556332 | Msa0663640:intron | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | - | chr4_4:2556456-2556475 | None:intergenic | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | + | chr4_4:2556473-2556492 | Msa0663640:intron | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | - | chr4_4:2556597-2556616 | None:intergenic | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | + | chr4_4:2556678-2556697 | Msa0663640:intron | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | + | chr4_4:2556848-2556867 | Msa0663640:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | - | chr4_4:2557051-2557070 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | - | chr4_4:2557230-2557249 | None:intergenic | 25.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | - | chr4_4:2557231-2557250 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | - | chr4_4:2557291-2557310 | None:intergenic | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | - | chr4_4:2557302-2557321 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | + | chr4_4:2557303-2557322 | Msa0663640:CDS | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | - | chr4_4:2557474-2557493 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | + | chr4_4:2557472-2557491 | Msa0663640:CDS | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | - | chr4_4:2557498-2557517 | None:intergenic | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | + | chr4_4:2557498-2557517 | Msa0663640:CDS | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | + | chr4_4:2557566-2557585 | Msa0663640:CDS | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | + | chr4_4:2557729-2557748 | Msa0663640:CDS | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | - | chr4_4:2557781-2557800 | None:intergenic | 25.0% |
| CTTTCAATTACATGTTATGC+TGG | + | chr4_4:2555470-2555489 | Msa0663640:CDS | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | - | chr4_4:2555727-2555746 | None:intergenic | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | - | chr4_4:2555742-2555761 | None:intergenic | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | - | chr4_4:2555839-2555858 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | + | chr4_4:2555860-2555879 | Msa0663640:intron | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | - | chr4_4:2556036-2556055 | None:intergenic | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | - | chr4_4:2556037-2556056 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | - | chr4_4:2556207-2556226 | None:intergenic | 30.0% |
| CAACTTTCTCATACTTCATT+TGG | + | chr4_4:2556514-2556533 | Msa0663640:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | - | chr4_4:2556542-2556561 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | + | chr4_4:2556542-2556561 | Msa0663640:intron | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | + | chr4_4:2556565-2556584 | Msa0663640:intron | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | - | chr4_4:2556687-2556706 | None:intergenic | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | - | chr4_4:2556755-2556774 | None:intergenic | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | + | chr4_4:2556830-2556849 | Msa0663640:intron | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | + | chr4_4:2556878-2556897 | Msa0663640:intron | 30.0% |
| TCCAAAGTTGTTCAAAAAGA+AGG | - | chr4_4:2556882-2556901 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGAACAACTTTGG+AGG | + | chr4_4:2556881-2556900 | Msa0663640:intron | 30.0% |
| TAGTTGAACATTTAGAAGAG+TGG | + | chr4_4:2556971-2556990 | Msa0663640:CDS | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | + | chr4_4:2557073-2557092 | Msa0663640:CDS | 30.0% | |
| ! | ACTTAATTTGGGCACATTTA+TGG | + | chr4_4:2557260-2557279 | Msa0663640:CDS | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | - | chr4_4:2557286-2557305 | None:intergenic | 30.0% |
| TTAATATTGCATAGCTTGGA+GGG | - | chr4_4:2557335-2557354 | None:intergenic | 30.0% | |
| ACACTTAATATTGCATAGCT+TGG | - | chr4_4:2557339-2557358 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | + | chr4_4:2557375-2557394 | Msa0663640:CDS | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | + | chr4_4:2557439-2557458 | Msa0663640:CDS | 30.0% | |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | + | chr4_4:2557481-2557500 | Msa0663640:CDS | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | + | chr4_4:2557509-2557528 | Msa0663640:CDS | 30.0% |
| CAACTTATGAAGTCATTATG+TGG | + | chr4_4:2557549-2557568 | Msa0663640:CDS | 30.0% | |
| AAGATAATTTCCTCCAATGT+GGG | - | chr4_4:2557662-2557681 | None:intergenic | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | + | chr4_4:2557662-2557681 | Msa0663640:CDS | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | - | chr4_4:2557756-2557775 | None:intergenic | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | - | chr4_4:2557757-2557776 | None:intergenic | 30.0% | |
| GCAAAAACCATCATCAAAGA+AGG | + | chr4_4:2555296-2555315 | Msa0663640:CDS | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | - | chr4_4:2555306-2555325 | None:intergenic | 35.0% | |
| TGATGAAGAGAAACACAAAG+TGG | + | chr4_4:2555350-2555369 | Msa0663640:CDS | 35.0% | |
| CAAAGTGGCAGTAGAAAAAT+TGG | + | chr4_4:2555365-2555384 | Msa0663640:CDS | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | + | chr4_4:2555370-2555389 | Msa0663640:CDS | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | + | chr4_4:2555380-2555399 | Msa0663640:CDS | 35.0% |
| AATAGGTCAGTAACAAGAGA+AGG | - | chr4_4:2555423-2555442 | None:intergenic | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | + | chr4_4:2555422-2555441 | Msa0663640:CDS | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | + | chr4_4:2555423-2555442 | Msa0663640:CDS | 35.0% | |
| AAGTGACGAATTCTGCATAT+AGG | - | chr4_4:2555453-2555472 | None:intergenic | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | - | chr4_4:2555837-2555856 | None:intergenic | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | - | chr4_4:2555838-2555857 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | + | chr4_4:2555936-2555955 | Msa0663640:CDS | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | + | chr4_4:2555961-2555980 | Msa0663640:CDS | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | + | chr4_4:2555962-2555981 | Msa0663640:CDS | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | + | chr4_4:2556246-2556265 | Msa0663640:intron | 35.0% | |
| AACAATAGAGAAAGAAGTGG+TGG | + | chr4_4:2556316-2556335 | Msa0663640:intron | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | + | chr4_4:2556317-2556336 | Msa0663640:intron | 35.0% | |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | - | chr4_4:2556569-2556588 | None:intergenic | 35.0% |
| ATAGGATGATGCCTAAAGTA+AGG | - | chr4_4:2556579-2556598 | None:intergenic | 35.0% | |
| ! | GAGAATTCGAGTTTGAATCA+TGG | - | chr4_4:2556769-2556788 | None:intergenic | 35.0% |
| AAGAGTGGTGCAAACAAAAA+GGG | + | chr4_4:2556986-2557005 | Msa0663640:CDS | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | - | chr4_4:2557192-2557211 | None:intergenic | 35.0% | |
| ! | ATTCTGCATTGGCAAACATA+TGG | - | chr4_4:2557203-2557222 | None:intergenic | 35.0% |
| TCTTGGGAAAAATTCTGCAT+TGG | - | chr4_4:2557214-2557233 | None:intergenic | 35.0% | |
| !!! | GGAGGGAAAATACCATTTTT+TGG | - | chr4_4:2557318-2557337 | None:intergenic | 35.0% |
| CTTAATATTGCATAGCTTGG+AGG | - | chr4_4:2557336-2557355 | None:intergenic | 35.0% | |
| GCTATGCAATATTAAGTGTG+TGG | + | chr4_4:2557340-2557359 | Msa0663640:CDS | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | - | chr4_4:2557408-2557427 | None:intergenic | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | + | chr4_4:2557408-2557427 | Msa0663640:CDS | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | - | chr4_4:2557483-2557502 | None:intergenic | 35.0% | |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | + | chr4_4:2557480-2557499 | Msa0663640:CDS | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | + | chr4_4:2557512-2557531 | Msa0663640:CDS | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | + | chr4_4:2557513-2557532 | Msa0663640:CDS | 35.0% |
| CATAATATGGCTAGAGATGA+TGG | + | chr4_4:2557579-2557598 | Msa0663640:CDS | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | - | chr4_4:2557663-2557682 | None:intergenic | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | + | chr4_4:2557661-2557680 | Msa0663640:CDS | 35.0% | |
| TGAAGATAGCAGCTGAAACT+TGG | + | chr4_4:2555274-2555293 | Msa0663640:CDS | 40.0% | |
| TGCATATAGGATCACCCAAT+AGG | - | chr4_4:2555440-2555459 | None:intergenic | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | + | chr4_4:2555904-2555923 | Msa0663640:intron | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | - | chr4_4:2555908-2555927 | None:intergenic | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | + | chr4_4:2555913-2555932 | Msa0663640:CDS | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | + | chr4_4:2555935-2555954 | Msa0663640:CDS | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | + | chr4_4:2555937-2555956 | Msa0663640:CDS | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | + | chr4_4:2556318-2556337 | Msa0663640:intron | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | + | chr4_4:2556319-2556338 | Msa0663640:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | + | chr4_4:2556926-2556945 | Msa0663640:intron | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | + | chr4_4:2556934-2556953 | Msa0663640:intron | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | + | chr4_4:2556940-2556959 | Msa0663640:intron | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | + | chr4_4:2556985-2557004 | Msa0663640:CDS | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | + | chr4_4:2556987-2557006 | Msa0663640:CDS | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | + | chr4_4:2557005-2557024 | Msa0663640:CDS | 40.0% | |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | - | chr4_4:2557141-2557160 | None:intergenic | 40.0% |
| ATGAATGTATGCCATGGCTA+AGG | + | chr4_4:2557445-2557464 | Msa0663640:CDS | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | - | chr4_4:2557459-2557478 | None:intergenic | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | + | chr4_4:2557522-2557541 | Msa0663640:CDS | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | + | chr4_4:2557582-2557601 | Msa0663640:CDS | 40.0% |
| TTGACTCACTTCAGTCACAA+TGG | - | chr4_4:2557616-2557635 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | + | chr4_4:2557616-2557635 | Msa0663640:CDS | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | + | chr4_4:2557617-2557636 | Msa0663640:CDS | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | + | chr4_4:2557646-2557665 | Msa0663640:CDS | 40.0% | |
| AAAAATGTGGACCCTCAGAT+TGG | + | chr4_4:2557742-2557761 | Msa0663640:CDS | 40.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | + | chr4_4:2555384-2555403 | Msa0663640:CDS | 45.0% |
| CTTTGTGAGGTTGGACAAAG+AGG | + | chr4_4:2555393-2555412 | Msa0663640:CDS | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | - | chr4_4:2555626-2555645 | None:intergenic | 45.0% | |
| AGACACGGGGAGAAAATCAT+CGG | - | chr4_4:2555824-2555843 | None:intergenic | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | + | chr4_4:2555925-2555944 | Msa0663640:CDS | 45.0% | |
| !! | CTAGAGATGATGGTGGTTGT+GGG | + | chr4_4:2557589-2557608 | Msa0663640:CDS | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | + | chr4_4:2557590-2557609 | Msa0663640:CDS | 45.0% |
| GTGGGATCACTTCTCTAACT+GGG | - | chr4_4:2557644-2557663 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | - | chr4_4:2557645-2557664 | None:intergenic | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | + | chr4_4:2557668-2557687 | Msa0663640:CDS | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | + | chr4_4:2557707-2557726 | Msa0663640:CDS | 45.0% | |
| !! | AAAAAAATAATTAATAGTTT+AGG | + | chr4_4:2556096-2556115 | Msa0663640:intron | 5.0% |
| TCAGAGTCTCTCCCAAACAC+AGG | + | chr4_4:2556022-2556041 | Msa0663640:CDS | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | - | chr4_4:2557116-2557135 | None:intergenic | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | - | chr4_4:2557120-2557139 | None:intergenic | 50.0% | |
| CATATGGTTGTATGTCGGCC+CGG | - | chr4_4:2557187-2557206 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | + | chr4_4:2557588-2557607 | Msa0663640:CDS | 50.0% |
| GAGAAGTGATCCCACATTGG+AGG | + | chr4_4:2557649-2557668 | Msa0663640:CDS | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | + | chr4_4:2557676-2557695 | Msa0663640:CDS | 50.0% | |
| CCAAGCGCGATGGTAGGCGA+AGG | - | chr4_4:2557164-2557183 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | + | chr4_4:2557161-2557180 | Msa0663640:CDS | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | + | chr4_4:2557165-2557184 | Msa0663640:CDS | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | + | chr4_4:2557166-2557185 | Msa0663640:CDS | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | - | chr4_4:2557170-2557189 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | - | chr4_4:2557174-2557193 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2555267 | 2557818 | 2555267 | ID=Msa0663640;Name=Msa0663640 |
| chr4_4 | mRNA | 2555267 | 2557818 | 2555267 | ID=Msa0663640-mRNA-1;Parent=Msa0663640;Name=Msa0663640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|408 |
| chr4_4 | exon | 2555267 | 2555491 | 2555267 | ID=Msa0663640-mRNA-1:exon:677;Parent=Msa0663640-mRNA-1 |
| chr4_4 | exon | 2555913 | 2556043 | 2555913 | ID=Msa0663640-mRNA-1:exon:678;Parent=Msa0663640-mRNA-1 |
| chr4_4 | exon | 2556948 | 2557818 | 2556948 | ID=Msa0663640-mRNA-1:exon:679;Parent=Msa0663640-mRNA-1 |
| chr4_4 | CDS | 2555267 | 2555491 | 2555267 | ID=Msa0663640-mRNA-1:cds;Parent=Msa0663640-mRNA-1 |
| chr4_4 | CDS | 2555913 | 2556043 | 2555913 | ID=Msa0663640-mRNA-1:cds;Parent=Msa0663640-mRNA-1 |
| chr4_4 | CDS | 2556948 | 2557818 | 2556948 | ID=Msa0663640-mRNA-1:cds;Parent=Msa0663640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
