Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585780 | XP_003604253.1 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585780 | sp|Q42381|HLS1_ARATH | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.32e-125 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585780 | G7JEG0 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0585780 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0538110 | Msa0585780 | 0.975053 | 2.981980e-139 | -8.615850e-47 |
| Msa0585780 | Msa0663260 | 0.878600 | 2.463734e-69 | -8.615850e-47 |
| Msa0585780 | Msa0663640 | 0.913514 | 5.632506e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585780 | MtrunA17_Chr4g0001411 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Msa0585780 | MtrunA17_Chr4g0053961 | 48.551 | 414 | 176 | 9 | 23 | 408 | 7 | 411 | 1.27e-124 | 366 |
| Msa0585780 | MtrunA17_Chr5g0401351 | 47.277 | 404 | 186 | 7 | 23 | 408 | 9 | 403 | 1.79e-121 | 358 |
| Msa0585780 | MtrunA17_Chr3g0105631 | 47.395 | 403 | 183 | 13 | 18 | 407 | 1 | 387 | 3.19e-108 | 323 |
| Msa0585780 | MtrunA17_Chr4g0068331 | 35.381 | 407 | 238 | 10 | 20 | 408 | 8 | 407 | 7.07e-68 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585780 | AT4G37580.1 | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.37e-126 | 370 |
| Msa0585780 | AT2G23060.1 | 46.875 | 416 | 184 | 7 | 23 | 408 | 5 | 413 | 6.04e-125 | 367 |
| Msa0585780 | AT5G67430.1 | 43.250 | 400 | 190 | 10 | 23 | 407 | 8 | 385 | 2.40e-104 | 314 |
| Msa0585780 | AT4G37580.2 | 46.571 | 350 | 158 | 6 | 81 | 408 | 4 | 346 | 1.07e-101 | 306 |
| Msa0585780 | AT5G67430.2 | 42.388 | 335 | 163 | 8 | 88 | 407 | 1 | 320 | 1.06e-84 | 261 |
| Msa0585780 | AT2G23060.2 | 44.406 | 286 | 144 | 5 | 131 | 408 | 1 | 279 | 4.27e-81 | 251 |
| Msa0585780 | AT2G30090.1 | 39.695 | 393 | 205 | 11 | 25 | 407 | 15 | 385 | 5.85e-79 | 249 |
Find 86 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAATTTGGGCACATTTA+TGG | 0.122350 | 4_2:-6835016 | Msa0585780:CDS |
| TTTGTCAAACAAACTTAATT+TGG | 0.149236 | 4_2:-6835028 | Msa0585780:CDS |
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4_2:-6836371 | Msa0585780:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4_2:-6834710 | Msa0585780:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4_2:-6836853 | Msa0585780:CDS |
| GTGTTCAAATTGCAAGTTAA+AGG | 0.270012 | 4_2:-6834901 | Msa0585780:CDS |
| GAAGAGTGGTGCAAACAAAA+AGG | 0.293479 | 4_2:-6835291 | Msa0585780:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4_2:+6836241 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4_2:-6834615 | Msa0585780:CDS |
| CGCCTACCATCGCGCTTGGC+CGG | 0.331091 | 4_2:-6835111 | Msa0585780:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4_2:-6836339 | Msa0585780:CDS |
| TTGTCAAACAAACTTAATTT+GGG | 0.336499 | 4_2:-6835027 | Msa0585780:CDS |
| TTTGGCACATACAGGAGATT+TGG | 0.340135 | 4_2:-6835342 | Msa0585780:intron |
| AGGGGCTAAGTATGCATATA+TGG | 0.342146 | 4_2:-6835271 | Msa0585780:CDS |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4_2:+6836972 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4_2:-6834778 | Msa0585780:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4_2:+6834634 | None:intergenic |
| AATGTGAGTACTCAAAATTC+AGG | 0.364355 | 4_2:-6835203 | Msa0585780:CDS |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4_2:-6834688 | Msa0585780:CDS |
| TTTGTGAACAAATTGATTGA+TGG | 0.374776 | 4_2:+6835228 | None:intergenic |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4_2:-6836350 | Msa0585780:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4_2:+6836242 | None:intergenic |
| AAAATCAAATCTATGTCTCT+TGG | 0.388928 | 4_2:+6835048 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4_2:-6836852 | Msa0585780:CDS |
| GCCTACCATCGCGCTTGGCC+GGG | 0.411093 | 4_2:-6835110 | Msa0585780:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4_2:-6836340 | Msa0585780:CDS |
| ATTCTGCATTGGCAAACATA+TGG | 0.414829 | 4_2:+6835076 | None:intergenic |
| AAATCAAATCTATGTCTCTT+GGG | 0.426207 | 4_2:+6835049 | None:intergenic |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4_2:-6837001 | Msa0585780:CDS |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4_2:-6836891 | Msa0585780:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4_2:-6834687 | Msa0585780:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4_2:-6836805 | Msa0585780:intron |
| ACACTTAATATTGCATAGCT+TGG | 0.451887 | 4_2:+6834940 | None:intergenic |
| ACAGCAATGTTTGTGCTGAT+TGG | 0.452904 | 4_2:+6835138 | None:intergenic |
| CTTAATATTGCATAGCTTGG+AGG | 0.465057 | 4_2:+6834943 | None:intergenic |
| AAGTGACGAATTCTGCATAT+AGG | 0.481918 | 4_2:+6836825 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4_2:-6836362 | Msa0585780:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4_2:-6834727 | Msa0585780:CDS |
| CCTTCGCCTACCATCGCGCT+TGG | 0.489542 | 4_2:-6835115 | Msa0585780:CDS |
| ACACAACATGCATGTACAAA+TGG | 0.489795 | 4_2:+6834871 | None:intergenic |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4_2:+6834781 | None:intergenic |
| GGCTTGTAGTGAGCATGAAC+AGG | 0.497937 | 4_2:+6835159 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4_2:-6834697 | Msa0585780:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4_2:-6834614 | Msa0585780:CDS |
| TGCATATAGGATCACCCAAT+AGG | 0.510258 | 4_2:+6836838 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4_2:-6834569 | Msa0585780:CDS |
| TGTAGTGAGCATGAACAGGC+TGG | 0.531502 | 4_2:+6835163 | None:intergenic |
| TTAATATTGCATAGCTTGGA+GGG | 0.532003 | 4_2:+6834944 | None:intergenic |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4_2:-6834660 | Msa0585780:CDS |
| CATATGGTTGTATGTCGGCC+CGG | 0.545386 | 4_2:+6835092 | None:intergenic |
| GTCGGCCCGGCCAAGCGCGA+TGG | 0.548720 | 4_2:+6835105 | None:intergenic |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4_2:-6834608 | Msa0585780:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4_2:+6834522 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4_2:-6836882 | Msa0585780:CDS |
| ATGAATGTATGCCATGGCTA+AGG | 0.560501 | 4_2:-6834831 | Msa0585780:CDS |
| TAGTTGAACATTTAGAAGAG+TGG | 0.560980 | 4_2:-6835305 | Msa0585780:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4_2:-6834686 | Msa0585780:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4_2:+6834617 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4_2:-6834754 | Msa0585780:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4_2:-6836895 | Msa0585780:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4_2:-6834659 | Msa0585780:CDS |
| GCTATGCAATATTAAGTGTG+TGG | 0.597858 | 4_2:-6834936 | Msa0585780:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4_2:+6834616 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4_2:+6836855 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4_2:-6834627 | Msa0585780:CDS |
| GCCCGGCCAAGCGCGATGGT+AGG | 0.614800 | 4_2:+6835109 | None:intergenic |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4_2:-6834763 | Msa0585780:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4_2:+6834523 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4_2:+6834635 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4_2:+6834663 | None:intergenic |
| AATGAAGGTAACCTTAGCCA+TGG | 0.631481 | 4_2:+6834820 | None:intergenic |
| TTTGTACATGCATGTTGTGT+AGG | 0.632512 | 4_2:-6834868 | Msa0585780:CDS |
| TATTAGATGAATGTATGCCA+TGG | 0.633115 | 4_2:-6834837 | Msa0585780:CDS |
| GCAAACATATGGTTGTATGT+CGG | 0.634118 | 4_2:+6835087 | None:intergenic |
| CCAAGCGCGATGGTAGGCGA+AGG | 0.634299 | 4_2:+6835115 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4_2:-6836338 | Msa0585780:CDS |
| ACATACAGGAGATTTGGCAT+TGG | 0.644852 | 4_2:-6835336 | Msa0585780:intron |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4_2:-6834767 | Msa0585780:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4_2:-6836313 | Msa0585780:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4_2:-6834630 | Msa0585780:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4_2:-6836253 | Msa0585780:intron |
| TGATGAAGAGAAACACAAAG+TGG | 0.670036 | 4_2:-6836925 | Msa0585780:CDS |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4_2:-6834600 | Msa0585780:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4_2:-6836314 | Msa0585780:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4_2:-6834764 | Msa0585780:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4_2:-6834694 | Msa0585780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATGCTTTTAGTT+AGG | + | chr4_2:6835297-6835316 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | - | chr4_2:6835561-6835580 | Msa0585780:intron | 15.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | + | chr4_2:6835862-6835881 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | + | chr4_2:6834795-6834814 | None:intergenic | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | - | chr4_2:6835498-6835517 | Msa0585780:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | - | chr4_2:6835499-6835518 | Msa0585780:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | + | chr4_2:6835507-6835526 | None:intergenic | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | - | chr4_2:6835681-6835700 | Msa0585780:intron | 20.0% |
| !!! | TCAAGACTTTTCTTATTTTA+CGG | + | chr4_2:6835944-6835963 | None:intergenic | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | - | chr4_2:6836128-6836147 | Msa0585780:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | - | chr4_2:6836460-6836479 | Msa0585780:intron | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | - | chr4_2:6836461-6836480 | Msa0585780:intron | 20.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | - | chr4_2:6835104-6835123 | Msa0585780:CDS | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | - | chr4_2:6835210-6835229 | Msa0585780:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | - | chr4_2:6835526-6835545 | Msa0585780:intron | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | + | chr4_2:6835669-6835688 | None:intergenic | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | - | chr4_2:6835686-6835705 | Msa0585780:intron | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | + | chr4_2:6835810-6835829 | None:intergenic | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | - | chr4_2:6835890-6835909 | Msa0585780:intron | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | - | chr4_2:6836060-6836079 | Msa0585780:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | + | chr4_2:6836263-6836282 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | + | chr4_2:6836442-6836461 | None:intergenic | 25.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | + | chr4_2:6836443-6836462 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | + | chr4_2:6836503-6836522 | None:intergenic | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | + | chr4_2:6836514-6836533 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | - | chr4_2:6836515-6836534 | Msa0585780:intron | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | + | chr4_2:6836686-6836705 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | - | chr4_2:6836684-6836703 | Msa0585780:intron | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | + | chr4_2:6836710-6836729 | None:intergenic | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | - | chr4_2:6836710-6836729 | Msa0585780:intron | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | - | chr4_2:6836778-6836797 | Msa0585780:intron | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | - | chr4_2:6836941-6836960 | Msa0585780:CDS | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | + | chr4_2:6836993-6837012 | None:intergenic | 25.0% |
| CTTTCAATTACATGTTATGC+TGG | - | chr4_2:6834683-6834702 | Msa0585780:CDS | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | + | chr4_2:6834940-6834959 | None:intergenic | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | + | chr4_2:6834955-6834974 | None:intergenic | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | + | chr4_2:6835052-6835071 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | - | chr4_2:6835073-6835092 | Msa0585780:CDS | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | + | chr4_2:6835249-6835268 | None:intergenic | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | + | chr4_2:6835250-6835269 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | + | chr4_2:6835420-6835439 | None:intergenic | 30.0% |
| CAACTTTCTCATACTTCATT+TGG | - | chr4_2:6835727-6835746 | Msa0585780:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | + | chr4_2:6835755-6835774 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | - | chr4_2:6835755-6835774 | Msa0585780:intron | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | - | chr4_2:6835778-6835797 | Msa0585780:intron | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | + | chr4_2:6835899-6835918 | None:intergenic | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | + | chr4_2:6835967-6835986 | None:intergenic | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | - | chr4_2:6836042-6836061 | Msa0585780:intron | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | - | chr4_2:6836090-6836109 | Msa0585780:intron | 30.0% |
| TCCAAAGTTGTTCAAAAAGA+AGG | + | chr4_2:6836094-6836113 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGAACAACTTTGG+AGG | - | chr4_2:6836093-6836112 | Msa0585780:intron | 30.0% |
| TAGTTGAACATTTAGAAGAG+TGG | - | chr4_2:6836183-6836202 | Msa0585780:intron | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | - | chr4_2:6836285-6836304 | Msa0585780:CDS | 30.0% | |
| ! | ACTTAATTTGGGCACATTTA+TGG | - | chr4_2:6836472-6836491 | Msa0585780:intron | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | + | chr4_2:6836498-6836517 | None:intergenic | 30.0% |
| TTAATATTGCATAGCTTGGA+GGG | + | chr4_2:6836547-6836566 | None:intergenic | 30.0% | |
| ACACTTAATATTGCATAGCT+TGG | + | chr4_2:6836551-6836570 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | - | chr4_2:6836587-6836606 | Msa0585780:intron | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | - | chr4_2:6836651-6836670 | Msa0585780:intron | 30.0% | |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | - | chr4_2:6836693-6836712 | Msa0585780:intron | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | - | chr4_2:6836721-6836740 | Msa0585780:intron | 30.0% |
| CAACTTATGAAGTCATTATG+TGG | - | chr4_2:6836761-6836780 | Msa0585780:intron | 30.0% | |
| AAGATAATTTCCTCCAATGT+GGG | + | chr4_2:6836874-6836893 | None:intergenic | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | - | chr4_2:6836874-6836893 | Msa0585780:CDS | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | + | chr4_2:6836968-6836987 | None:intergenic | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | + | chr4_2:6836969-6836988 | None:intergenic | 30.0% | |
| GCAAAAACCATCATCAAAGA+AGG | - | chr4_2:6834509-6834528 | Msa0585780:CDS | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | + | chr4_2:6834519-6834538 | None:intergenic | 35.0% | |
| TGATGAAGAGAAACACAAAG+TGG | - | chr4_2:6834563-6834582 | Msa0585780:CDS | 35.0% | |
| CAAAGTGGCAGTAGAAAAAT+TGG | - | chr4_2:6834578-6834597 | Msa0585780:CDS | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | - | chr4_2:6834583-6834602 | Msa0585780:CDS | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | - | chr4_2:6834593-6834612 | Msa0585780:CDS | 35.0% |
| AATAGGTCAGTAACAAGAGA+AGG | + | chr4_2:6834636-6834655 | None:intergenic | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | - | chr4_2:6834635-6834654 | Msa0585780:CDS | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | - | chr4_2:6834636-6834655 | Msa0585780:CDS | 35.0% | |
| AAGTGACGAATTCTGCATAT+AGG | + | chr4_2:6834666-6834685 | None:intergenic | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | + | chr4_2:6835050-6835069 | None:intergenic | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | + | chr4_2:6835051-6835070 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | - | chr4_2:6835149-6835168 | Msa0585780:CDS | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | - | chr4_2:6835174-6835193 | Msa0585780:CDS | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | - | chr4_2:6835175-6835194 | Msa0585780:CDS | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | - | chr4_2:6835459-6835478 | Msa0585780:intron | 35.0% | |
| AACAATAGAGAAAGAAGTGG+TGG | - | chr4_2:6835529-6835548 | Msa0585780:intron | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | - | chr4_2:6835530-6835549 | Msa0585780:intron | 35.0% | |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | + | chr4_2:6835782-6835801 | None:intergenic | 35.0% |
| ATAGGATGATGCCTAAAGTA+AGG | + | chr4_2:6835792-6835811 | None:intergenic | 35.0% | |
| ! | GAGAATTCGAGTTTGAATCA+TGG | + | chr4_2:6835981-6836000 | None:intergenic | 35.0% |
| AAGAGTGGTGCAAACAAAAA+GGG | - | chr4_2:6836198-6836217 | Msa0585780:intron | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | + | chr4_2:6836404-6836423 | None:intergenic | 35.0% | |
| ! | ATTCTGCATTGGCAAACATA+TGG | + | chr4_2:6836415-6836434 | None:intergenic | 35.0% |
| TCTTGGGAAAAATTCTGCAT+TGG | + | chr4_2:6836426-6836445 | None:intergenic | 35.0% | |
| !!! | GGAGGGAAAATACCATTTTT+TGG | + | chr4_2:6836530-6836549 | None:intergenic | 35.0% |
| CTTAATATTGCATAGCTTGG+AGG | + | chr4_2:6836548-6836567 | None:intergenic | 35.0% | |
| GCTATGCAATATTAAGTGTG+TGG | - | chr4_2:6836552-6836571 | Msa0585780:intron | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | + | chr4_2:6836620-6836639 | None:intergenic | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | - | chr4_2:6836620-6836639 | Msa0585780:intron | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | + | chr4_2:6836695-6836714 | None:intergenic | 35.0% | |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | - | chr4_2:6836692-6836711 | Msa0585780:intron | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | - | chr4_2:6836724-6836743 | Msa0585780:intron | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | - | chr4_2:6836725-6836744 | Msa0585780:intron | 35.0% |
| CATAATATGGCTAGAGATGA+TGG | - | chr4_2:6836791-6836810 | Msa0585780:intron | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | + | chr4_2:6836875-6836894 | None:intergenic | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | - | chr4_2:6836873-6836892 | Msa0585780:CDS | 35.0% | |
| TGAAGATAGCAGCTGAAACT+TGG | - | chr4_2:6834487-6834506 | Msa0585780:CDS | 40.0% | |
| TGCATATAGGATCACCCAAT+AGG | + | chr4_2:6834653-6834672 | None:intergenic | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | - | chr4_2:6835117-6835136 | Msa0585780:CDS | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | + | chr4_2:6835121-6835140 | None:intergenic | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | - | chr4_2:6835126-6835145 | Msa0585780:CDS | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | - | chr4_2:6835148-6835167 | Msa0585780:CDS | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | - | chr4_2:6835150-6835169 | Msa0585780:CDS | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | - | chr4_2:6835531-6835550 | Msa0585780:intron | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | - | chr4_2:6835532-6835551 | Msa0585780:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | - | chr4_2:6836138-6836157 | Msa0585780:intron | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | - | chr4_2:6836146-6836165 | Msa0585780:intron | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | - | chr4_2:6836152-6836171 | Msa0585780:intron | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | - | chr4_2:6836197-6836216 | Msa0585780:intron | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | - | chr4_2:6836199-6836218 | Msa0585780:intron | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | - | chr4_2:6836217-6836236 | Msa0585780:intron | 40.0% | |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | + | chr4_2:6836353-6836372 | None:intergenic | 40.0% |
| ATGAATGTATGCCATGGCTA+AGG | - | chr4_2:6836657-6836676 | Msa0585780:intron | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | + | chr4_2:6836671-6836690 | None:intergenic | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | - | chr4_2:6836734-6836753 | Msa0585780:intron | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | - | chr4_2:6836794-6836813 | Msa0585780:intron | 40.0% |
| TTGACTCACTTCAGTCACAA+TGG | + | chr4_2:6836828-6836847 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | - | chr4_2:6836828-6836847 | Msa0585780:CDS | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | - | chr4_2:6836829-6836848 | Msa0585780:CDS | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | - | chr4_2:6836858-6836877 | Msa0585780:CDS | 40.0% | |
| AAAAATGTGGACCCTCAGAT+TGG | - | chr4_2:6836954-6836973 | Msa0585780:CDS | 40.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | - | chr4_2:6834597-6834616 | Msa0585780:CDS | 45.0% |
| CTTTGTGAGGTTGGACAAAG+AGG | - | chr4_2:6834606-6834625 | Msa0585780:CDS | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | + | chr4_2:6834839-6834858 | None:intergenic | 45.0% | |
| AGACACGGGGAGAAAATCAT+CGG | + | chr4_2:6835037-6835056 | None:intergenic | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | - | chr4_2:6835138-6835157 | Msa0585780:CDS | 45.0% | |
| !! | CTAGAGATGATGGTGGTTGT+GGG | - | chr4_2:6836801-6836820 | Msa0585780:intron | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | - | chr4_2:6836802-6836821 | Msa0585780:intron | 45.0% |
| GTGGGATCACTTCTCTAACT+GGG | + | chr4_2:6836856-6836875 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | + | chr4_2:6836857-6836876 | None:intergenic | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | - | chr4_2:6836880-6836899 | Msa0585780:CDS | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | - | chr4_2:6836919-6836938 | Msa0585780:CDS | 45.0% | |
| !! | AAAAAAATAATTAATAGTTT+AGG | - | chr4_2:6835309-6835328 | Msa0585780:CDS | 5.0% |
| TCAGAGTCTCTCCCAAACAC+AGG | - | chr4_2:6835235-6835254 | Msa0585780:CDS | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | + | chr4_2:6836328-6836347 | None:intergenic | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | + | chr4_2:6836332-6836351 | None:intergenic | 50.0% | |
| CATATGGTTGTATGTCGGCC+CGG | + | chr4_2:6836399-6836418 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | - | chr4_2:6836800-6836819 | Msa0585780:intron | 50.0% |
| GAGAAGTGATCCCACATTGG+AGG | - | chr4_2:6836861-6836880 | Msa0585780:CDS | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | - | chr4_2:6836888-6836907 | Msa0585780:CDS | 50.0% | |
| CCAAGCGCGATGGTAGGCGA+AGG | + | chr4_2:6836376-6836395 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | - | chr4_2:6836373-6836392 | Msa0585780:intron | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | - | chr4_2:6836377-6836396 | Msa0585780:intron | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | - | chr4_2:6836378-6836397 | Msa0585780:intron | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | + | chr4_2:6836382-6836401 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | + | chr4_2:6836386-6836405 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6834480 | 6837030 | 6834480 | ID=Msa0585780;Name=Msa0585780 |
| chr4_2 | mRNA | 6834480 | 6837030 | 6834480 | ID=Msa0585780-mRNA-1;Parent=Msa0585780;Name=Msa0585780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|408 |
| chr4_2 | exon | 6836806 | 6837030 | 6836806 | ID=Msa0585780-mRNA-1:exon:1699;Parent=Msa0585780-mRNA-1 |
| chr4_2 | exon | 6836254 | 6836384 | 6836254 | ID=Msa0585780-mRNA-1:exon:1698;Parent=Msa0585780-mRNA-1 |
| chr4_2 | exon | 6834480 | 6835350 | 6834480 | ID=Msa0585780-mRNA-1:exon:1697;Parent=Msa0585780-mRNA-1 |
| chr4_2 | CDS | 6836806 | 6837030 | 6836806 | ID=Msa0585780-mRNA-1:cds;Parent=Msa0585780-mRNA-1 |
| chr4_2 | CDS | 6836254 | 6836384 | 6836254 | ID=Msa0585780-mRNA-1:cds;Parent=Msa0585780-mRNA-1 |
| chr4_2 | CDS | 6834480 | 6835350 | 6834480 | ID=Msa0585780-mRNA-1:cds;Parent=Msa0585780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
