Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663260 | XP_003604253.1 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663260 | sp|Q42381|HLS1_ARATH | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.32e-125 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663260 | G7JEG0 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0663260 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663260 | Msa0663640 | 0.805546 | 1.266773e-49 | -8.615850e-47 |
| Msa0538110 | Msa0663260 | 0.853350 | 2.532931e-61 | -8.615850e-47 |
| Msa0585780 | Msa0663260 | 0.878600 | 2.463734e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663260 | MtrunA17_Chr4g0001411 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Msa0663260 | MtrunA17_Chr4g0053961 | 48.551 | 414 | 176 | 9 | 23 | 408 | 7 | 411 | 1.27e-124 | 366 |
| Msa0663260 | MtrunA17_Chr5g0401351 | 47.277 | 404 | 186 | 7 | 23 | 408 | 9 | 403 | 1.79e-121 | 358 |
| Msa0663260 | MtrunA17_Chr3g0105631 | 47.395 | 403 | 183 | 13 | 18 | 407 | 1 | 387 | 3.19e-108 | 323 |
| Msa0663260 | MtrunA17_Chr4g0068331 | 35.381 | 407 | 238 | 10 | 20 | 408 | 8 | 407 | 7.07e-68 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663260 | AT4G37580.1 | 48.775 | 408 | 179 | 7 | 24 | 408 | 3 | 403 | 3.37e-126 | 370 |
| Msa0663260 | AT2G23060.1 | 46.875 | 416 | 184 | 7 | 23 | 408 | 5 | 413 | 6.04e-125 | 367 |
| Msa0663260 | AT5G67430.1 | 43.250 | 400 | 190 | 10 | 23 | 407 | 8 | 385 | 2.40e-104 | 314 |
| Msa0663260 | AT4G37580.2 | 46.571 | 350 | 158 | 6 | 81 | 408 | 4 | 346 | 1.07e-101 | 306 |
| Msa0663260 | AT5G67430.2 | 42.388 | 335 | 163 | 8 | 88 | 407 | 1 | 320 | 1.06e-84 | 261 |
| Msa0663260 | AT2G23060.2 | 44.406 | 286 | 144 | 5 | 131 | 408 | 1 | 279 | 4.27e-81 | 251 |
| Msa0663260 | AT2G30090.1 | 39.695 | 393 | 205 | 11 | 25 | 407 | 15 | 385 | 5.85e-79 | 249 |
Find 86 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAATTTGGGCACATTTA+TGG | 0.122350 | 4_4:-1994956 | Msa0663260:CDS |
| TTTGTCAAACAAACTTAATT+TGG | 0.149236 | 4_4:-1994968 | Msa0663260:CDS |
| TCCAAACAGGTTGCAGAATA+TGG | 0.225082 | 4_4:-1996312 | Msa0663260:intron |
| ATGTGGATTTGTACATAATA+TGG | 0.244584 | 4_4:-1994650 | Msa0663260:CDS |
| TTCTCTTGTTACTGACCTAT+TGG | 0.257298 | 4_4:-1996794 | Msa0663260:CDS |
| GTGTTCAAATTGCAAGTTAA+AGG | 0.270012 | 4_4:-1994841 | Msa0663260:CDS |
| GAAGAGTGGTGCAAACAAAA+AGG | 0.293479 | 4_4:-1995231 | Msa0663260:CDS |
| TTGAAAATAGAACCTGTGTT+TGG | 0.321183 | 4_4:+1996182 | None:intergenic |
| CACATTGGAGGAAATTATCT+TGG | 0.324781 | 4_4:-1994555 | Msa0663260:CDS |
| CGCCTACCATCGCGCTTGGC+CGG | 0.331091 | 4_4:-1995051 | Msa0663260:CDS |
| AGAAGTTGTAGGAGTGATAA+GGG | 0.332414 | 4_4:-1996280 | Msa0663260:CDS |
| TTGTCAAACAAACTTAATTT+GGG | 0.336499 | 4_4:-1994967 | Msa0663260:CDS |
| TTTGGCACATACAGGAGATT+TGG | 0.340135 | 4_4:-1995282 | Msa0663260:intron |
| AGGGGCTAAGTATGCATATA+TGG | 0.342146 | 4_4:-1995211 | Msa0663260:CDS |
| TCTTCAACCTTCTTTGATGA+TGG | 0.344515 | 4_4:+1996913 | None:intergenic |
| TTTGGGATTTATCTAATGTA+TGG | 0.345767 | 4_4:-1994718 | Msa0663260:CDS |
| TGTGGGATCACTTCTCTAAC+TGG | 0.350327 | 4_4:+1994574 | None:intergenic |
| AATGTGAGTACTCAAAATTC+AGG | 0.364355 | 4_4:-1995143 | Msa0663260:CDS |
| GCTAGAGATGATGGTGGTTG+TGG | 0.374585 | 4_4:-1994628 | Msa0663260:CDS |
| TTTGTGAACAAATTGATTGA+TGG | 0.374776 | 4_4:+1995168 | None:intergenic |
| GGAGAAGAAGGAGAAGTTGT+AGG | 0.384818 | 4_4:-1996291 | Msa0663260:CDS |
| TGAAAATAGAACCTGTGTTT+GGG | 0.387719 | 4_4:+1996183 | None:intergenic |
| AAAATCAAATCTATGTCTCT+TGG | 0.388928 | 4_4:+1994988 | None:intergenic |
| TCTCTTGTTACTGACCTATT+GGG | 0.400220 | 4_4:-1996793 | Msa0663260:CDS |
| GCCTACCATCGCGCTTGGCC+GGG | 0.411093 | 4_4:-1995050 | Msa0663260:CDS |
| GAGAAGTTGTAGGAGTGATA+AGG | 0.411618 | 4_4:-1996281 | Msa0663260:CDS |
| ATTCTGCATTGGCAAACATA+TGG | 0.414829 | 4_4:+1995016 | None:intergenic |
| AAATCAAATCTATGTCTCTT+GGG | 0.426207 | 4_4:+1994989 | None:intergenic |
| TGAAGATAGCAGCTGAAACT+TGG | 0.430463 | 4_4:-1996942 | Msa0663260:CDS |
| TTGGAAAGGCTTTGTGAGGT+TGG | 0.433195 | 4_4:-1996832 | Msa0663260:CDS |
| CTAGAGATGATGGTGGTTGT+GGG | 0.441863 | 4_4:-1994627 | Msa0663260:CDS |
| CTTTCAATTACATGTTATGC+TGG | 0.442954 | 4_4:-1996746 | Msa0663260:intron |
| ACACTTAATATTGCATAGCT+TGG | 0.451887 | 4_4:+1994880 | None:intergenic |
| ACAGCAATGTTTGTGCTGAT+TGG | 0.452904 | 4_4:+1995078 | None:intergenic |
| CTTAATATTGCATAGCTTGG+AGG | 0.465057 | 4_4:+1994883 | None:intergenic |
| AAGTGACGAATTCTGCATAT+AGG | 0.481918 | 4_4:+1996766 | None:intergenic |
| GTTGCAGAATATGGAGAAGA+AGG | 0.487530 | 4_4:-1996303 | Msa0663260:CDS |
| CAACTTATGAAGTCATTATG+TGG | 0.488738 | 4_4:-1994667 | Msa0663260:CDS |
| CCTTCGCCTACCATCGCGCT+TGG | 0.489542 | 4_4:-1995055 | Msa0663260:CDS |
| ACACAACATGCATGTACAAA+TGG | 0.489795 | 4_4:+1994811 | None:intergenic |
| TACATTAGATAAATCCCAAA+TGG | 0.496017 | 4_4:+1994721 | None:intergenic |
| GGCTTGTAGTGAGCATGAAC+AGG | 0.497937 | 4_4:+1995099 | None:intergenic |
| CATAATATGGCTAGAGATGA+TGG | 0.502811 | 4_4:-1994637 | Msa0663260:CDS |
| ACATTGGAGGAAATTATCTT+GGG | 0.506598 | 4_4:-1994554 | Msa0663260:CDS |
| TGCATATAGGATCACCCAAT+AGG | 0.510258 | 4_4:+1996779 | None:intergenic |
| GAGTCTTGAGCACATGAAGA+AGG | 0.531250 | 4_4:-1994509 | Msa0663260:CDS |
| TGTAGTGAGCATGAACAGGC+TGG | 0.531502 | 4_4:+1995103 | None:intergenic |
| TTAATATTGCATAGCTTGGA+GGG | 0.532003 | 4_4:+1994884 | None:intergenic |
| TTGTGACTGAAGTGAGTCAA+AGG | 0.543039 | 4_4:-1994600 | Msa0663260:CDS |
| CATATGGTTGTATGTCGGCC+CGG | 0.545386 | 4_4:+1995032 | None:intergenic |
| GTCGGCCCGGCCAAGCGCGA+TGG | 0.548720 | 4_4:+1995045 | None:intergenic |
| GAGGAAATTATCTTGGGCTG+AGG | 0.553326 | 4_4:-1994548 | Msa0663260:CDS |
| TCTATAATTGTACCAATCTG+AGG | 0.555825 | 4_4:+1994462 | None:intergenic |
| CTTTGTGAGGTTGGACAAAG+AGG | 0.556865 | 4_4:-1996823 | Msa0663260:CDS |
| ATGAATGTATGCCATGGCTA+AGG | 0.560501 | 4_4:-1994771 | Msa0663260:CDS |
| TAGTTGAACATTTAGAAGAG+TGG | 0.560980 | 4_4:-1995245 | Msa0663260:CDS |
| TAGAGATGATGGTGGTTGTG+GGG | 0.570180 | 4_4:-1994626 | Msa0663260:CDS |
| AAGATAATTTCCTCCAATGT+GGG | 0.570772 | 4_4:+1994557 | None:intergenic |
| TTACACATGGAGGGTAAATG+TGG | 0.575651 | 4_4:-1994694 | Msa0663260:CDS |
| AAAATTGGAAAGGCTTTGTG+AGG | 0.581130 | 4_4:-1996836 | Msa0663260:CDS |
| TGTGACTGAAGTGAGTCAAA+GGG | 0.585966 | 4_4:-1994599 | Msa0663260:CDS |
| GCTATGCAATATTAAGTGTG+TGG | 0.597858 | 4_4:-1994876 | Msa0663260:CDS |
| CAAGATAATTTCCTCCAATG+TGG | 0.604095 | 4_4:+1994556 | None:intergenic |
| AATAGGTCAGTAACAAGAGA+AGG | 0.604941 | 4_4:+1996796 | None:intergenic |
| GAGAAGTGATCCCACATTGG+AGG | 0.607408 | 4_4:-1994567 | Msa0663260:CDS |
| GCCCGGCCAAGCGCGATGGT+AGG | 0.614800 | 4_4:+1995049 | None:intergenic |
| ATGTATGGATTACACATGGA+GGG | 0.621344 | 4_4:-1994703 | Msa0663260:CDS |
| CTATAATTGTACCAATCTGA+GGG | 0.622462 | 4_4:+1994463 | None:intergenic |
| GTGGGATCACTTCTCTAACT+GGG | 0.623674 | 4_4:+1994575 | None:intergenic |
| TTGACTCACTTCAGTCACAA+TGG | 0.630592 | 4_4:+1994603 | None:intergenic |
| AATGAAGGTAACCTTAGCCA+TGG | 0.631481 | 4_4:+1994760 | None:intergenic |
| TTTGTACATGCATGTTGTGT+AGG | 0.632512 | 4_4:-1994808 | Msa0663260:CDS |
| TATTAGATGAATGTATGCCA+TGG | 0.633115 | 4_4:-1994777 | Msa0663260:CDS |
| GCAAACATATGGTTGTATGT+CGG | 0.634118 | 4_4:+1995027 | None:intergenic |
| CCAAGCGCGATGGTAGGCGA+AGG | 0.634299 | 4_4:+1995055 | None:intergenic |
| GAAGTTGTAGGAGTGATAAG+GGG | 0.639263 | 4_4:-1996279 | Msa0663260:CDS |
| ACATACAGGAGATTTGGCAT+TGG | 0.644852 | 4_4:-1995276 | Msa0663260:intron |
| TCTAATGTATGGATTACACA+TGG | 0.650598 | 4_4:-1994707 | Msa0663260:CDS |
| GTGTGAAAACAGTTACAAGA+GGG | 0.661903 | 4_4:-1996254 | Msa0663260:CDS |
| TTAGAGAAGTGATCCCACAT+TGG | 0.665411 | 4_4:-1994570 | Msa0663260:CDS |
| TCAGAGTCTCTCCCAAACAC+AGG | 0.668522 | 4_4:-1996194 | Msa0663260:intron |
| TGATGAAGAGAAACACAAAG+TGG | 0.670036 | 4_4:-1996866 | Msa0663260:CDS |
| TATCTTGGGCTGAGGACATG+TGG | 0.676374 | 4_4:-1994540 | Msa0663260:CDS |
| TGTGTGAAAACAGTTACAAG+AGG | 0.678804 | 4_4:-1996255 | Msa0663260:CDS |
| AATGTATGGATTACACATGG+AGG | 0.692644 | 4_4:-1994704 | Msa0663260:CDS |
| AATATGGCTAGAGATGATGG+TGG | 0.797279 | 4_4:-1994634 | Msa0663260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATGCTTTTAGTT+AGG | + | chr4_4:1995237-1995256 | None:intergenic | 15.0% |
| !! | TTCTTTGTAAGAAAAATAAA+AGG | - | chr4_4:1995501-1995520 | Msa0663260:intron | 15.0% |
| !! | CATTTATTTATTCATAAAAG+TGG | + | chr4_4:1995802-1995821 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAATATCTTCG+AGG | + | chr4_4:1994735-1994754 | None:intergenic | 20.0% |
| !! | TCATTACAATTTACAATTTG+TGG | + | chr4_4:1994940-1994959 | None:intergenic | 20.0% |
| !! | TATGAACCTTATAAAAACTA+AGG | - | chr4_4:1995438-1995457 | Msa0663260:intron | 20.0% |
| !! | ATGAACCTTATAAAAACTAA+GGG | - | chr4_4:1995439-1995458 | Msa0663260:intron | 20.0% |
| !!! | AATATCCCTTAGTTTTTATA+AGG | + | chr4_4:1995447-1995466 | None:intergenic | 20.0% |
| !! | TACTAAGAAACTATAGTAAA+TGG | - | chr4_4:1995621-1995640 | Msa0663260:intron | 20.0% |
| !! | AATAACTAAAAGATTGTCTT+TGG | - | chr4_4:1996069-1996088 | Msa0663260:intron | 20.0% |
| !! | TTTGTCAAACAAACTTAATT+TGG | - | chr4_4:1996401-1996420 | Msa0663260:intron | 20.0% |
| !! | TTGTCAAACAAACTTAATTT+GGG | - | chr4_4:1996402-1996421 | Msa0663260:intron | 20.0% |
| ! | ATGTTATATTTGTTCCAAAC+AGG | - | chr4_4:1995044-1995063 | Msa0663260:CDS | 25.0% |
| !!! | GTAAAACTTGCTTATGTTTT+AGG | - | chr4_4:1995150-1995169 | Msa0663260:CDS | 25.0% |
| ! | TAAAACAATAGAGAAAGAAG+TGG | - | chr4_4:1995466-1995485 | Msa0663260:intron | 25.0% |
| ! | TCTTAGTAAAGTAATCATAG+TGG | + | chr4_4:1995609-1995628 | None:intergenic | 25.0% |
| ! | AGAAACTATAGTAAATGGAT+AGG | - | chr4_4:1995626-1995645 | Msa0663260:intron | 25.0% |
| ! | CAAGAATTAGAAGTAAGAAT+AGG | + | chr4_4:1995750-1995769 | None:intergenic | 25.0% |
| !! | TCTTAACCTCTATTTTATAG+AGG | - | chr4_4:1995831-1995850 | Msa0663260:intron | 25.0% |
| ! | TTAGGTTAATAGTTAGAGTT+TGG | - | chr4_4:1996001-1996020 | Msa0663260:intron | 25.0% |
| ! | TTTGTGAACAAATTGATTGA+TGG | + | chr4_4:1996204-1996223 | None:intergenic | 25.0% |
| ! | AAATCAAATCTATGTCTCTT+GGG | + | chr4_4:1996383-1996402 | None:intergenic | 25.0% |
| ! | AAAATCAAATCTATGTCTCT+TGG | + | chr4_4:1996384-1996403 | None:intergenic | 25.0% |
| !! | CATTTTGTTAGGTCTTTTTT+AGG | + | chr4_4:1996444-1996463 | None:intergenic | 25.0% |
| !! | TTTTTGGATCACATTTTGTT+AGG | + | chr4_4:1996455-1996474 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATCCAAAAAA+TGG | - | chr4_4:1996456-1996475 | Msa0663260:intron | 25.0% |
| ! | CTAAAAACATTAGGAAATGA+AGG | + | chr4_4:1996627-1996646 | None:intergenic | 25.0% |
| !! | CTTCATTTCCTAATGTTTTT+AGG | - | chr4_4:1996625-1996644 | Msa0663260:intron | 25.0% |
| ! | TACATTAGATAAATCCCAAA+TGG | + | chr4_4:1996651-1996670 | None:intergenic | 25.0% |
| !! | TTTGGGATTTATCTAATGTA+TGG | - | chr4_4:1996651-1996670 | Msa0663260:intron | 25.0% |
| ! | ATGTGGATTTGTACATAATA+TGG | - | chr4_4:1996719-1996738 | Msa0663260:intron | 25.0% |
| ! | GATAGTATACATGAAAAATG+TGG | - | chr4_4:1996882-1996901 | Msa0663260:CDS | 25.0% |
| ! | AACAAAAATTACTGATGAAG+AGG | + | chr4_4:1996934-1996953 | None:intergenic | 25.0% |
| CTTTCAATTACATGTTATGC+TGG | - | chr4_4:1994623-1994642 | Msa0663260:CDS | 30.0% | |
| GCATTAGGTATACATCAATA+TGG | + | chr4_4:1994880-1994899 | None:intergenic | 30.0% | |
| CTAAATCATAATGTCGCATT+AGG | + | chr4_4:1994895-1994914 | None:intergenic | 30.0% | |
| AGTATTTATGACTCAAGACA+CGG | + | chr4_4:1994992-1995011 | None:intergenic | 30.0% | |
| CTAGTTTCACAGTTTGATAT+TGG | - | chr4_4:1995013-1995032 | Msa0663260:CDS | 30.0% | |
| TGAAAATAGAACCTGTGTTT+GGG | + | chr4_4:1995189-1995208 | None:intergenic | 30.0% | |
| TTGAAAATAGAACCTGTGTT+TGG | + | chr4_4:1995190-1995209 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGAAATGACTTGTG+TGG | + | chr4_4:1995360-1995379 | None:intergenic | 30.0% |
| CAACTTTCTCATACTTCATT+TGG | - | chr4_4:1995667-1995686 | Msa0663260:intron | 30.0% | |
| TATTGTCTAGATGAAGAACT+TGG | + | chr4_4:1995695-1995714 | None:intergenic | 30.0% | |
| AGTTCTTCATCTAGACAATA+AGG | - | chr4_4:1995695-1995714 | Msa0663260:intron | 30.0% | |
| TCCACAAAAAACCTTACTTT+AGG | - | chr4_4:1995718-1995737 | Msa0663260:intron | 30.0% | |
| TCTCTTCCTCTATAAAATAG+AGG | + | chr4_4:1995840-1995859 | None:intergenic | 30.0% | |
| GAATCATGGTTGAAATAGTT+CGG | + | chr4_4:1995908-1995927 | None:intergenic | 30.0% | |
| ATATTAGTTGTCAGCATGTT+AGG | - | chr4_4:1995983-1996002 | Msa0663260:intron | 30.0% | |
| ! | ACCTTCTTTTTGAACAACTT+TGG | - | chr4_4:1996031-1996050 | Msa0663260:intron | 30.0% |
| TCCAAAGTTGTTCAAAAAGA+AGG | + | chr4_4:1996035-1996054 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGAACAACTTTGG+AGG | - | chr4_4:1996034-1996053 | Msa0663260:intron | 30.0% |
| TAGTTGAACATTTAGAAGAG+TGG | - | chr4_4:1996124-1996143 | Msa0663260:intron | 30.0% | |
| AATGTGAGTACTCAAAATTC+AGG | - | chr4_4:1996226-1996245 | Msa0663260:CDS | 30.0% | |
| ! | ACTTAATTTGGGCACATTTA+TGG | - | chr4_4:1996413-1996432 | Msa0663260:intron | 30.0% |
| !!! | TGTTAGGTCTTTTTTAGGTA+TGG | + | chr4_4:1996439-1996458 | None:intergenic | 30.0% |
| TTAATATTGCATAGCTTGGA+GGG | + | chr4_4:1996488-1996507 | None:intergenic | 30.0% | |
| ACACTTAATATTGCATAGCT+TGG | + | chr4_4:1996492-1996511 | None:intergenic | 30.0% | |
| GTGTTCAAATTGCAAGTTAA+AGG | - | chr4_4:1996528-1996547 | Msa0663260:intron | 30.0% | |
| TATTAGATGAATGTATGCCA+TGG | - | chr4_4:1996592-1996611 | Msa0663260:intron | 30.0% | |
| !!! | CTAATGTTTTTAGGCCATTT+GGG | - | chr4_4:1996634-1996653 | Msa0663260:intron | 30.0% |
| ! | TCTAATGTATGGATTACACA+TGG | - | chr4_4:1996662-1996681 | Msa0663260:intron | 30.0% |
| CAACTTATGAAGTCATTATG+TGG | - | chr4_4:1996702-1996721 | Msa0663260:intron | 30.0% | |
| AAGATAATTTCCTCCAATGT+GGG | + | chr4_4:1996815-1996834 | None:intergenic | 30.0% | |
| ACATTGGAGGAAATTATCTT+GGG | - | chr4_4:1996815-1996834 | Msa0663260:CDS | 30.0% | |
| CTATAATTGTACCAATCTGA+GGG | + | chr4_4:1996909-1996928 | None:intergenic | 30.0% | |
| TCTATAATTGTACCAATCTG+AGG | + | chr4_4:1996910-1996929 | None:intergenic | 30.0% | |
| GCAAAAACCATCATCAAAGA+AGG | - | chr4_4:1994449-1994468 | Msa0663260:CDS | 35.0% | |
| TCTTCAACCTTCTTTGATGA+TGG | + | chr4_4:1994459-1994478 | None:intergenic | 35.0% | |
| TGATGAAGAGAAACACAAAG+TGG | - | chr4_4:1994503-1994522 | Msa0663260:CDS | 35.0% | |
| CAAAGTGGCAGTAGAAAAAT+TGG | - | chr4_4:1994518-1994537 | Msa0663260:CDS | 35.0% | |
| TGGCAGTAGAAAAATTGGAA+AGG | - | chr4_4:1994523-1994542 | Msa0663260:CDS | 35.0% | |
| ! | AAAATTGGAAAGGCTTTGTG+AGG | - | chr4_4:1994533-1994552 | Msa0663260:CDS | 35.0% |
| AATAGGTCAGTAACAAGAGA+AGG | + | chr4_4:1994576-1994595 | None:intergenic | 35.0% | |
| TTCTCTTGTTACTGACCTAT+TGG | - | chr4_4:1994575-1994594 | Msa0663260:CDS | 35.0% | |
| TCTCTTGTTACTGACCTATT+GGG | - | chr4_4:1994576-1994595 | Msa0663260:CDS | 35.0% | |
| AAGTGACGAATTCTGCATAT+AGG | + | chr4_4:1994606-1994625 | None:intergenic | 35.0% | |
| TATTTATGACTCAAGACACG+GGG | + | chr4_4:1994990-1995009 | None:intergenic | 35.0% | |
| GTATTTATGACTCAAGACAC+GGG | + | chr4_4:1994991-1995010 | None:intergenic | 35.0% | |
| AGAAGTTGTAGGAGTGATAA+GGG | - | chr4_4:1995089-1995108 | Msa0663260:CDS | 35.0% | |
| TGTGTGAAAACAGTTACAAG+AGG | - | chr4_4:1995114-1995133 | Msa0663260:CDS | 35.0% | |
| GTGTGAAAACAGTTACAAGA+GGG | - | chr4_4:1995115-1995134 | Msa0663260:CDS | 35.0% | |
| CAAGTTGTTATGTGCATTCT+TGG | - | chr4_4:1995399-1995418 | Msa0663260:intron | 35.0% | |
| AACAATAGAGAAAGAAGTGG+TGG | - | chr4_4:1995469-1995488 | Msa0663260:intron | 35.0% | |
| ACAATAGAGAAAGAAGTGGT+GGG | - | chr4_4:1995470-1995489 | Msa0663260:intron | 35.0% | |
| !!! | GCCTAAAGTAAGGTTTTTTG+TGG | + | chr4_4:1995722-1995741 | None:intergenic | 35.0% |
| ATAGGATGATGCCTAAAGTA+AGG | + | chr4_4:1995732-1995751 | None:intergenic | 35.0% | |
| ! | GAGAATTCGAGTTTGAATCA+TGG | + | chr4_4:1995922-1995941 | None:intergenic | 35.0% |
| AAGAGTGGTGCAAACAAAAA+GGG | - | chr4_4:1996139-1996158 | Msa0663260:intron | 35.0% | |
| GCAAACATATGGTTGTATGT+CGG | + | chr4_4:1996345-1996364 | None:intergenic | 35.0% | |
| ! | ATTCTGCATTGGCAAACATA+TGG | + | chr4_4:1996356-1996375 | None:intergenic | 35.0% |
| TCTTGGGAAAAATTCTGCAT+TGG | + | chr4_4:1996367-1996386 | None:intergenic | 35.0% | |
| !!! | GGAGGGAAAATACCATTTTT+TGG | + | chr4_4:1996471-1996490 | None:intergenic | 35.0% |
| CTTAATATTGCATAGCTTGG+AGG | + | chr4_4:1996489-1996508 | None:intergenic | 35.0% | |
| GCTATGCAATATTAAGTGTG+TGG | - | chr4_4:1996493-1996512 | Msa0663260:intron | 35.0% | |
| ACACAACATGCATGTACAAA+TGG | + | chr4_4:1996561-1996580 | None:intergenic | 35.0% | |
| TTTGTACATGCATGTTGTGT+AGG | - | chr4_4:1996561-1996580 | Msa0663260:intron | 35.0% | |
| CCAAATGGCCTAAAAACATT+AGG | + | chr4_4:1996636-1996655 | None:intergenic | 35.0% | |
| !!! | CCTAATGTTTTTAGGCCATT+TGG | - | chr4_4:1996633-1996652 | Msa0663260:intron | 35.0% |
| ! | AATGTATGGATTACACATGG+AGG | - | chr4_4:1996665-1996684 | Msa0663260:intron | 35.0% |
| ! | ATGTATGGATTACACATGGA+GGG | - | chr4_4:1996666-1996685 | Msa0663260:intron | 35.0% |
| CATAATATGGCTAGAGATGA+TGG | - | chr4_4:1996732-1996751 | Msa0663260:intron | 35.0% | |
| CAAGATAATTTCCTCCAATG+TGG | + | chr4_4:1996816-1996835 | None:intergenic | 35.0% | |
| CACATTGGAGGAAATTATCT+TGG | - | chr4_4:1996814-1996833 | Msa0663260:CDS | 35.0% | |
| TGAAGATAGCAGCTGAAACT+TGG | - | chr4_4:1994427-1994446 | Msa0663260:CDS | 40.0% | |
| TGCATATAGGATCACCCAAT+AGG | + | chr4_4:1994593-1994612 | None:intergenic | 40.0% | |
| TCCAAACAGGTTGCAGAATA+TGG | - | chr4_4:1995057-1995076 | Msa0663260:CDS | 40.0% | |
| TCCATATTCTGCAACCTGTT+TGG | + | chr4_4:1995061-1995080 | None:intergenic | 40.0% | |
| GTTGCAGAATATGGAGAAGA+AGG | - | chr4_4:1995066-1995085 | Msa0663260:CDS | 40.0% | |
| GAGAAGTTGTAGGAGTGATA+AGG | - | chr4_4:1995088-1995107 | Msa0663260:CDS | 40.0% | |
| GAAGTTGTAGGAGTGATAAG+GGG | - | chr4_4:1995090-1995109 | Msa0663260:CDS | 40.0% | |
| CAATAGAGAAAGAAGTGGTG+GGG | - | chr4_4:1995471-1995490 | Msa0663260:intron | 40.0% | |
| AATAGAGAAAGAAGTGGTGG+GGG | - | chr4_4:1995472-1995491 | Msa0663260:intron | 40.0% | |
| AGATTGTCTTTGGCACATAC+AGG | - | chr4_4:1996079-1996098 | Msa0663260:intron | 40.0% | |
| TTTGGCACATACAGGAGATT+TGG | - | chr4_4:1996087-1996106 | Msa0663260:intron | 40.0% | |
| ACATACAGGAGATTTGGCAT+TGG | - | chr4_4:1996093-1996112 | Msa0663260:intron | 40.0% | |
| GAAGAGTGGTGCAAACAAAA+AGG | - | chr4_4:1996138-1996157 | Msa0663260:intron | 40.0% | |
| AGAGTGGTGCAAACAAAAAG+GGG | - | chr4_4:1996140-1996159 | Msa0663260:intron | 40.0% | |
| AGGGGCTAAGTATGCATATA+TGG | - | chr4_4:1996158-1996177 | Msa0663260:intron | 40.0% | |
| ! | ACAGCAATGTTTGTGCTGAT+TGG | + | chr4_4:1996294-1996313 | None:intergenic | 40.0% |
| ATGAATGTATGCCATGGCTA+AGG | - | chr4_4:1996598-1996617 | Msa0663260:intron | 40.0% | |
| AATGAAGGTAACCTTAGCCA+TGG | + | chr4_4:1996612-1996631 | None:intergenic | 40.0% | |
| TTACACATGGAGGGTAAATG+TGG | - | chr4_4:1996675-1996694 | Msa0663260:intron | 40.0% | |
| ! | AATATGGCTAGAGATGATGG+TGG | - | chr4_4:1996735-1996754 | Msa0663260:intron | 40.0% |
| TTGACTCACTTCAGTCACAA+TGG | + | chr4_4:1996769-1996788 | None:intergenic | 40.0% | |
| TTGTGACTGAAGTGAGTCAA+AGG | - | chr4_4:1996769-1996788 | Msa0663260:CDS | 40.0% | |
| TGTGACTGAAGTGAGTCAAA+GGG | - | chr4_4:1996770-1996789 | Msa0663260:CDS | 40.0% | |
| TTAGAGAAGTGATCCCACAT+TGG | - | chr4_4:1996799-1996818 | Msa0663260:CDS | 40.0% | |
| AAAAATGTGGACCCTCAGAT+TGG | - | chr4_4:1996895-1996914 | Msa0663260:CDS | 40.0% | |
| ! | TTGGAAAGGCTTTGTGAGGT+TGG | - | chr4_4:1994537-1994556 | Msa0663260:CDS | 45.0% |
| CTTTGTGAGGTTGGACAAAG+AGG | - | chr4_4:1994546-1994565 | Msa0663260:CDS | 45.0% | |
| GTTTACGAGATATCAGCTCG+TGG | + | chr4_4:1994779-1994798 | None:intergenic | 45.0% | |
| AGACACGGGGAGAAAATCAT+CGG | + | chr4_4:1994977-1994996 | None:intergenic | 45.0% | |
| GGAGAAGAAGGAGAAGTTGT+AGG | - | chr4_4:1995078-1995097 | Msa0663260:CDS | 45.0% | |
| !! | CTAGAGATGATGGTGGTTGT+GGG | - | chr4_4:1996742-1996761 | Msa0663260:intron | 45.0% |
| !! | TAGAGATGATGGTGGTTGTG+GGG | - | chr4_4:1996743-1996762 | Msa0663260:intron | 45.0% |
| GTGGGATCACTTCTCTAACT+GGG | + | chr4_4:1996797-1996816 | None:intergenic | 45.0% | |
| TGTGGGATCACTTCTCTAAC+TGG | + | chr4_4:1996798-1996817 | None:intergenic | 45.0% | |
| GAGGAAATTATCTTGGGCTG+AGG | - | chr4_4:1996821-1996840 | Msa0663260:CDS | 45.0% | |
| GAGTCTTGAGCACATGAAGA+AGG | - | chr4_4:1996860-1996879 | Msa0663260:CDS | 45.0% | |
| !! | AAAAAAATAATTAATAGTTT+AGG | - | chr4_4:1995249-1995268 | Msa0663260:CDS | 5.0% |
| TCAGAGTCTCTCCCAAACAC+AGG | - | chr4_4:1995175-1995194 | Msa0663260:CDS | 50.0% | |
| TGTAGTGAGCATGAACAGGC+TGG | + | chr4_4:1996269-1996288 | None:intergenic | 50.0% | |
| GGCTTGTAGTGAGCATGAAC+AGG | + | chr4_4:1996273-1996292 | None:intergenic | 50.0% | |
| CATATGGTTGTATGTCGGCC+CGG | + | chr4_4:1996340-1996359 | None:intergenic | 50.0% | |
| !! | GCTAGAGATGATGGTGGTTG+TGG | - | chr4_4:1996741-1996760 | Msa0663260:intron | 50.0% |
| GAGAAGTGATCCCACATTGG+AGG | - | chr4_4:1996802-1996821 | Msa0663260:CDS | 50.0% | |
| TATCTTGGGCTGAGGACATG+TGG | - | chr4_4:1996829-1996848 | Msa0663260:CDS | 50.0% | |
| CCAAGCGCGATGGTAGGCGA+AGG | + | chr4_4:1996317-1996336 | None:intergenic | 65.0% | |
| CCTTCGCCTACCATCGCGCT+TGG | - | chr4_4:1996314-1996333 | Msa0663260:intron | 65.0% | |
| CGCCTACCATCGCGCTTGGC+CGG | - | chr4_4:1996318-1996337 | Msa0663260:intron | 70.0% | |
| GCCTACCATCGCGCTTGGCC+GGG | - | chr4_4:1996319-1996338 | Msa0663260:intron | 70.0% | |
| GCCCGGCCAAGCGCGATGGT+AGG | + | chr4_4:1996323-1996342 | None:intergenic | 75.0% | |
| ! | GTCGGCCCGGCCAAGCGCGA+TGG | + | chr4_4:1996327-1996346 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 1994420 | 1996971 | 1994420 | ID=Msa0663260;Name=Msa0663260 |
| chr4_4 | mRNA | 1994420 | 1996971 | 1994420 | ID=Msa0663260-mRNA-1;Parent=Msa0663260;Name=Msa0663260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|408 |
| chr4_4 | exon | 1996747 | 1996971 | 1996747 | ID=Msa0663260-mRNA-1:exon:541;Parent=Msa0663260-mRNA-1 |
| chr4_4 | exon | 1996195 | 1996325 | 1996195 | ID=Msa0663260-mRNA-1:exon:540;Parent=Msa0663260-mRNA-1 |
| chr4_4 | exon | 1994420 | 1995290 | 1994420 | ID=Msa0663260-mRNA-1:exon:539;Parent=Msa0663260-mRNA-1 |
| chr4_4 | CDS | 1996747 | 1996971 | 1996747 | ID=Msa0663260-mRNA-1:cds;Parent=Msa0663260-mRNA-1 |
| chr4_4 | CDS | 1996195 | 1996325 | 1996195 | ID=Msa0663260-mRNA-1:cds;Parent=Msa0663260-mRNA-1 |
| chr4_4 | CDS | 1994420 | 1995290 | 1994420 | ID=Msa0663260-mRNA-1:cds;Parent=Msa0663260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
