Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543980 | XP_003605920.1 | 90.411 | 219 | 16 | 1 | 30 | 243 | 27 | 245 | 2.07e-141 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543980 | sp|P0DKI1|SDH32_ARATH | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 3.63e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543980 | G7JDI5 | 90.411 | 219 | 16 | 1 | 30 | 243 | 27 | 245 | 9.87e-142 | 406 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543980 | Msa0590370 | -0.830107 | 3.536948e-55 | -8.615850e-47 |
| Msa0543980 | Msa0599800 | 0.829879 | 4.021100e-55 | -8.615850e-47 |
| Msa0543980 | Msa0741590 | 0.802081 | 6.643985e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543980 | MtrunA17_Chr4g0024541 | 90.411 | 219 | 16 | 1 | 30 | 243 | 27 | 245 | 1.90e-145 | 406 |
| Msa0543980 | MtrunA17_Chr2g0310041 | 38.889 | 126 | 43 | 4 | 47 | 151 | 22 | 134 | 2.75e-14 | 68.9 |
| Msa0543980 | MtrunA17_Chr4g0024571 | 46.739 | 92 | 28 | 3 | 81 | 151 | 842 | 933 | 8.41e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543980 | AT5G09600.2 | 38.129 | 139 | 69 | 3 | 112 | 233 | 37 | 175 | 2.65e-23 | 93.6 |
| Msa0543980 | AT5G09600.3 | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 3.69e-23 | 94.0 |
| Msa0543980 | AT5G09600.1 | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 3.69e-23 | 94.0 |
| Msa0543980 | AT4G32210.1 | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 3.69e-23 | 94.0 |
Find 94 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTTAATAATTACAATTT+AGG | 0.168288 | 4_1:-31625595 | Msa0543980:three_prime_UTR |
| CACCAATAGCATTGGATTCT+TGG | 0.198805 | 4_1:+31626354 | None:intergenic |
| TGCCAACGAGTTCAATTCTT+TGG | 0.263661 | 4_1:-31630196 | Msa0543980:intron |
| GTGTTCTGCGGCGGCGGTGG+CGG | 0.291042 | 4_1:+31630471 | None:intergenic |
| TCAATTTGCAATAGAATTGC+TGG | 0.304214 | 4_1:-31626070 | Msa0543980:CDS |
| CATGCTTTCCACATGTCATT+AGG | 0.313221 | 4_1:-31625664 | Msa0543980:three_prime_UTR |
| TCAAACACTGTTCAGGTATC+AGG | 0.320214 | 4_1:+31625844 | None:intergenic |
| AGAGAGAGATCGACGGGGTT+GGG | 0.322042 | 4_1:+31630679 | None:intergenic |
| TGTTCTGCGGCGGCGGTGGC+GGG | 0.371942 | 4_1:+31630472 | None:intergenic |
| ACAGGAAGATGAGGAGATAA+TGG | 0.389506 | 4_1:+31626121 | None:intergenic |
| GAAAGCTGAGGCTGATAAAC+AGG | 0.389683 | 4_1:+31626103 | None:intergenic |
| AAAACACATCACCGAAGTTT+CGG | 0.394338 | 4_1:+31625524 | None:intergenic |
| ACCGGACTGCTTTGTCTCAC+TGG | 0.403158 | 4_1:+31626150 | None:intergenic |
| GAGGTGTTCTGCGGCGGCGG+TGG | 0.410680 | 4_1:+31630468 | None:intergenic |
| AACAATTACTTGCAATTTGA+GGG | 0.410821 | 4_1:+31625491 | None:intergenic |
| CAACAATTACTTGCAATTTG+AGG | 0.415675 | 4_1:+31625490 | None:intergenic |
| TATCAGAGATATCAGGCTCT+TGG | 0.419479 | 4_1:-31626430 | Msa0543980:intron |
| AATGGTTTACCTAAGCTTGC+TGG | 0.423627 | 4_1:-31630222 | Msa0543980:CDS |
| AGGAGATAATGGACGAAAAC+CGG | 0.429686 | 4_1:+31626132 | None:intergenic |
| CTCAGAATCAAACACTGTTC+AGG | 0.430029 | 4_1:+31625837 | None:intergenic |
| TAGAATATGAACTGGTAGAA+TGG | 0.440366 | 4_1:+31625971 | None:intergenic |
| CACCAAGAATCCAATGCTAT+TGG | 0.443714 | 4_1:-31626356 | Msa0543980:intron |
| GATATACATGAAAGTGGGTT+TGG | 0.443895 | 4_1:-31626011 | Msa0543980:CDS |
| ATCGACGGGGTTGGGGCGTG+TGG | 0.447455 | 4_1:+31630687 | None:intergenic |
| TCTTCCATCCCTCGCTCCAC+CGG | 0.453645 | 4_1:-31630505 | Msa0543980:CDS |
| GGAAGATGATAAGAAGAACT+TGG | 0.454548 | 4_1:+31630552 | None:intergenic |
| GCTGACACATTGGGATTGGC+TGG | 0.459366 | 4_1:-31626208 | Msa0543980:CDS |
| CGGCGGCGGTGGCGGGAGAG+AGG | 0.462506 | 4_1:+31630479 | None:intergenic |
| GAGAGAGATCGACGGGGTTG+GGG | 0.470206 | 4_1:+31630680 | None:intergenic |
| GAGAGAGAGATCGACGGGGT+TGG | 0.475398 | 4_1:+31630678 | None:intergenic |
| GTGGAGGTGTTCTGCGGCGG+CGG | 0.479737 | 4_1:+31630465 | None:intergenic |
| GGATCCGGTGGAGCGAGGGA+TGG | 0.482734 | 4_1:+31630501 | None:intergenic |
| AGAGGGATCCGGTGGAGCGA+GGG | 0.482779 | 4_1:+31630497 | None:intergenic |
| AATTGCACTATACAGATGAT+AGG | 0.483923 | 4_1:+31625898 | None:intergenic |
| TTATATGATATACATGAAAG+TGG | 0.485153 | 4_1:-31626017 | Msa0543980:CDS |
| TTGATGAATAGAATATGAAC+TGG | 0.490793 | 4_1:+31625963 | None:intergenic |
| ATGAGAAATGAATATTAAGC+GGG | 0.491009 | 4_1:-31625356 | Msa0543980:three_prime_UTR |
| GGTTGAAGAAAGAGAAGAAG+AGG | 0.494925 | 4_1:+31630531 | None:intergenic |
| TGGACTGGACACTAATGTGC+TGG | 0.504894 | 4_1:-31626410 | Msa0543980:CDS |
| GTGCTGGCTGGAGCTAGATA+TGG | 0.506804 | 4_1:-31626394 | Msa0543980:CDS |
| GAGTGGTGGTGGTACGGTGG+AGG | 0.509089 | 4_1:+31630449 | None:intergenic |
| ACCACCACCACTCTTCCCTT+CGG | 0.509378 | 4_1:-31630439 | Msa0543980:intron |
| TTGGCATGACCAGCAAGCTT+AGG | 0.510352 | 4_1:+31630213 | None:intergenic |
| GAGATATCAGGCTCTTGGAC+TGG | 0.510444 | 4_1:-31626425 | Msa0543980:CDS |
| TACATGAAAGTGGGTTTGGT+TGG | 0.513953 | 4_1:-31626007 | Msa0543980:CDS |
| CTGAACAGTGTTTGATTCTG+AGG | 0.515913 | 4_1:-31625836 | Msa0543980:intron |
| GAGAGGGATCCGGTGGAGCG+AGG | 0.518177 | 4_1:+31630496 | None:intergenic |
| TATATGATATACATGAAAGT+GGG | 0.518946 | 4_1:-31626016 | Msa0543980:CDS |
| AAGGAACTCACCAATAGCAT+TGG | 0.519323 | 4_1:+31626346 | None:intergenic |
| AGGGAAGAGTGGTGGTGGTA+CGG | 0.519672 | 4_1:+31630443 | None:intergenic |
| GGCGGCGGTGGCGGGAGAGA+GGG | 0.532726 | 4_1:+31630480 | None:intergenic |
| GAAGAGTGGTGGTGGTACGG+TGG | 0.534709 | 4_1:+31630446 | None:intergenic |
| ACCAGTGAGACAAAGCAGTC+CGG | 0.535769 | 4_1:-31626151 | Msa0543980:CDS |
| TTGATTTGGCTGATCTGAGA+AGG | 0.536410 | 4_1:+31630578 | None:intergenic |
| CAATAGCATTGGATTCTTGG+TGG | 0.539060 | 4_1:+31626357 | None:intergenic |
| TCTACCAAGGGACATGTCAA+TGG | 0.544954 | 4_1:-31630240 | Msa0543980:CDS |
| GGTGGCGGGAGAGAGGGATC+CGG | 0.549472 | 4_1:+31630486 | None:intergenic |
| GGGTGCTGACACATTGGGAT+TGG | 0.554674 | 4_1:-31626212 | Msa0543980:CDS |
| CAATTACTTGCAATTTGAGG+GGG | 0.560768 | 4_1:+31625493 | None:intergenic |
| CTGGACACTAATGTGCTGGC+TGG | 0.565168 | 4_1:-31626406 | Msa0543980:CDS |
| AAGTGTGGGTGCTGACACAT+TGG | 0.570843 | 4_1:-31626218 | Msa0543980:CDS |
| TAAACCATTGACATGTCCCT+TGG | 0.572355 | 4_1:+31630236 | None:intergenic |
| AAATCTCAACGGCAAGTAGG+TGG | 0.577349 | 4_1:+31625936 | None:intergenic |
| CAGAAATCTCAACGGCAAGT+AGG | 0.577571 | 4_1:+31625933 | None:intergenic |
| GGCGGGAGAGAGGGATCCGG+TGG | 0.580462 | 4_1:+31630489 | None:intergenic |
| ATAGGGACTCAACACTCTGA+TGG | 0.585666 | 4_1:-31626257 | Msa0543980:intron |
| AGAAACTTTGAGAGAAGTGT+GGG | 0.587145 | 4_1:-31626232 | Msa0543980:CDS |
| TACCAAAGAATTGAACTCGT+TGG | 0.588237 | 4_1:+31630194 | None:intergenic |
| GGCTGATAAACAGGAAGATG+AGG | 0.590288 | 4_1:+31626112 | None:intergenic |
| ACCGAAGGGAAGAGTGGTGG+TGG | 0.598522 | 4_1:+31630438 | None:intergenic |
| GATGAGAAATGAATATTAAG+CGG | 0.601804 | 4_1:-31625357 | Msa0543980:three_prime_UTR |
| CACATCACCGAAGTTTCGGA+TGG | 0.601856 | 4_1:+31625528 | None:intergenic |
| ATTACTTGCAATTTGAGGGG+GGG | 0.604745 | 4_1:+31625495 | None:intergenic |
| AAAGCAAGGTGACAGCAGCT+AGG | 0.607874 | 4_1:+31626041 | None:intergenic |
| GAACTGGTAGAATGGATCAA+AGG | 0.608212 | 4_1:+31625979 | None:intergenic |
| GGAGCGAGGGATGGAAGAGA+AGG | 0.608241 | 4_1:+31630510 | None:intergenic |
| AATTACTTGCAATTTGAGGG+GGG | 0.624593 | 4_1:+31625494 | None:intergenic |
| ACGGTGGAGGTGTTCTGCGG+CGG | 0.625160 | 4_1:+31630462 | None:intergenic |
| ATCGGTACCGAAGGGAAGAG+TGG | 0.627136 | 4_1:+31630432 | None:intergenic |
| ACAATTACTTGCAATTTGAG+GGG | 0.628575 | 4_1:+31625492 | None:intergenic |
| AATGAACTCCTAATGACATG+TGG | 0.633045 | 4_1:+31625656 | None:intergenic |
| CAGATGATAGGACATGGCTA+AGG | 0.634205 | 4_1:+31625910 | None:intergenic |
| AGTGTGGGTGCTGACACATT+GGG | 0.635508 | 4_1:-31626217 | Msa0543980:CDS |
| GGTACGGTGGAGGTGTTCTG+CGG | 0.636709 | 4_1:+31630459 | None:intergenic |
| GCGGATGAAAACTCTACCAA+GGG | 0.646432 | 4_1:-31630252 | Msa0543980:CDS |
| AGCGGATGAAAACTCTACCA+AGG | 0.652915 | 4_1:-31630253 | Msa0543980:CDS |
| ATGTGGAAAGCATGCCAACA+TGG | 0.655221 | 4_1:+31625673 | None:intergenic |
| GGCTAAGGCAGAAATCTCAA+CGG | 0.655737 | 4_1:+31625925 | None:intergenic |
| TGATCTGAGAAGGCAAGACA+TGG | 0.661362 | 4_1:+31630588 | None:intergenic |
| AAGAAACTTTGAGAGAAGTG+TGG | 0.671681 | 4_1:-31626233 | Msa0543980:CDS |
| ACTATACAGATGATAGGACA+TGG | 0.695753 | 4_1:+31625904 | None:intergenic |
| GGTACCGAAGGGAAGAGTGG+TGG | 0.698603 | 4_1:+31630435 | None:intergenic |
| GAAAGCGTCGAAGAAAGCTG+AGG | 0.708046 | 4_1:+31626091 | None:intergenic |
| TGAGAAATGAATATTAAGCG+GGG | 0.710565 | 4_1:-31625355 | Msa0543980:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAAAAAAAAAAAAAA+CGG | + | chr4_1:31626177-31626196 | None:intergenic | 10.0% |
| !! | TAATCATGATGATATATTTA+AGG | + | chr4_1:31625655-31625674 | None:intergenic | 15.0% |
| !! | AAATATATCATCATGATTAT+TGG | - | chr4_1:31625656-31625675 | Msa0543980:three_prime_UTR | 15.0% |
| !!! | TTTTATTTTTTTTCATTCAG+CGG | - | chr4_1:31625751-31625770 | Msa0543980:intron | 15.0% |
| !!! | TTTTGAAATTAATTTTAGCA+GGG | + | chr4_1:31625994-31626013 | None:intergenic | 15.0% |
| !!! | TTTTTGAAATTAATTTTAGC+AGG | + | chr4_1:31625995-31626014 | None:intergenic | 15.0% |
| !!! | GATTTATTTTTGTTAGTTAT+TGG | - | chr4_1:31627502-31627521 | Msa0543980:intron | 15.0% |
| !!! | TTAAAGTTTGATTAGTTTAA+TGG | - | chr4_1:31628178-31628197 | Msa0543980:intron | 15.0% |
| !!! | TAAAGTTTGATTAGTTTAAT+GGG | - | chr4_1:31628179-31628198 | Msa0543980:intron | 15.0% |
| !! | ATAAATAATAATCTATGTAC+AGG | - | chr4_1:31628656-31628675 | Msa0543980:intron | 15.0% |
| !!! | ACATAACATTTTTATGTTTT+TGG | - | chr4_1:31630633-31630652 | Msa0543980:five_prime_UTR | 15.0% |
| !!! | GAGTTTTTAGTTATATTAAG+TGG | - | chr4_1:31625906-31625925 | Msa0543980:CDS | 20.0% |
| !!! | TTTGAAATTAATTTTAGCAG+GGG | + | chr4_1:31625993-31626012 | None:intergenic | 20.0% |
| !!! | TGCTATTTAAGACAAATTTT+TGG | - | chr4_1:31626097-31626116 | Msa0543980:CDS | 20.0% |
| !!! | ATACTATGATCTAAACTTTT+AGG | + | chr4_1:31626303-31626322 | None:intergenic | 20.0% |
| !! | ATGTTTGTTTAAATTAAGAC+TGG | - | chr4_1:31626409-31626428 | Msa0543980:CDS | 20.0% |
| !!! | CTAAAATTTGACTAGTTTAA+CGG | - | chr4_1:31626472-31626491 | Msa0543980:intron | 20.0% |
| !!! | TAAAATTTGACTAGTTTAAC+GGG | - | chr4_1:31626473-31626492 | Msa0543980:intron | 20.0% |
| !! | TTGAGTAAATAGTTATCAAT+TGG | + | chr4_1:31626641-31626660 | None:intergenic | 20.0% |
| !! | TGATAACTATTTACTCAATA+AGG | - | chr4_1:31626643-31626662 | Msa0543980:intron | 20.0% |
| !! | ATTCAAAATCAAAAGCAAAT+AGG | + | chr4_1:31627066-31627085 | None:intergenic | 20.0% |
| !!! | TCTAAAACAAATATACATGT+GGG | + | chr4_1:31627530-31627549 | None:intergenic | 20.0% |
| !!! | ATCTAAAACAAATATACATG+TGG | + | chr4_1:31627531-31627550 | None:intergenic | 20.0% |
| !!! | ACATGTATATTTGTTTTAGA+TGG | - | chr4_1:31627530-31627549 | Msa0543980:intron | 20.0% |
| !! | TTAATTTCCATGATTTCATA+TGG | - | chr4_1:31628063-31628082 | Msa0543980:intron | 20.0% |
| !! | TATTTAGTAAGTTTGCATAT+TGG | - | chr4_1:31628136-31628155 | Msa0543980:intron | 20.0% |
| !!! | AAAGTTTGATTAGTTTAATG+GGG | - | chr4_1:31628180-31628199 | Msa0543980:intron | 20.0% |
| !! | CTAAAGAAATGGTTATAAAT+TGG | + | chr4_1:31628355-31628374 | None:intergenic | 20.0% |
| !!! | TTTTGTAGATTTTGAACAAA+AGG | - | chr4_1:31628608-31628627 | Msa0543980:intron | 20.0% |
| !! | AAAAAAGATCCTTTATGTTT+GGG | + | chr4_1:31628749-31628768 | None:intergenic | 20.0% |
| !! | AAAAAAAGATCCTTTATGTT+TGG | + | chr4_1:31628750-31628769 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | - | chr4_1:31628885-31628904 | Msa0543980:intron | 20.0% |
| !!! | AAGAAAAAGCATGAAAAATA+TGG | + | chr4_1:31629026-31629045 | None:intergenic | 20.0% |
| !!! | TTTTCATTCTAGAACAAATA+AGG | + | chr4_1:31629276-31629295 | None:intergenic | 20.0% |
| !!! | TTTTCATTCTAGAACAAATA+AGG | + | chr4_1:31629276-31629295 | None:intergenic | 20.0% |
| !! | ATGACATTTACATTTCAATA+GGG | - | chr4_1:31629748-31629767 | Msa0543980:intron | 20.0% |
| !! | GTATATCATATAAAAAAGCA+AGG | + | chr4_1:31629998-31630017 | None:intergenic | 20.0% |
| !! | TTATATGATATACATGAAAG+TGG | - | chr4_1:31630005-31630024 | Msa0543980:intron | 20.0% |
| !! | TATATGATATACATGAAAGT+GGG | - | chr4_1:31630006-31630025 | Msa0543980:intron | 20.0% |
| !! | AATATGATGAATCAAGAAAA+GGG | + | chr4_1:31630220-31630239 | None:intergenic | 20.0% |
| !! | AAATATGATGAATCAAGAAA+AGG | + | chr4_1:31630221-31630240 | None:intergenic | 20.0% |
| !!! | TTTTCTTGATTCATCATATT+TGG | - | chr4_1:31630220-31630239 | Msa0543980:CDS | 20.0% |
| !!! | TCATCATATTTGGTTTTTTA+TGG | - | chr4_1:31630230-31630249 | Msa0543980:CDS | 20.0% |
| !! | TTATACATTAGTCAAAAACA+AGG | + | chr4_1:31630295-31630314 | None:intergenic | 20.0% |
| !!! | ATGTATAATGTCATATTTTC+AGG | - | chr4_1:31630307-31630326 | Msa0543980:intron | 20.0% |
| !! | CGACTTAATAATTACAATTT+AGG | - | chr4_1:31630427-31630446 | Msa0543980:intron | 20.0% |
| !!! | TGTGTTTTAGGAAAATTCTT+TGG | - | chr4_1:31625936-31625955 | Msa0543980:CDS | 25.0% |
| ! | TGAGCATGAAATGAAATAAT+TGG | - | chr4_1:31626037-31626056 | Msa0543980:CDS | 25.0% |
| ! | GAAATGAAATAATTGGATAG+CGG | - | chr4_1:31626044-31626063 | Msa0543980:CDS | 25.0% |
| !!! | GACAAATTTTTGGTTAATAG+TGG | - | chr4_1:31626107-31626126 | Msa0543980:CDS | 25.0% |
| !!! | ATTTTGAGTTTTGACAATAC+TGG | - | chr4_1:31626206-31626225 | Msa0543980:CDS | 25.0% |
| !!! | TTTTGAAATTTTGGGTGATT+GGG | - | chr4_1:31626367-31626386 | Msa0543980:CDS | 25.0% |
| !!! | AAAATTTGACTAGTTTAACG+GGG | - | chr4_1:31626474-31626493 | Msa0543980:intron | 25.0% |
| ! | AAACTAATTCCATTATACCT+AGG | - | chr4_1:31626582-31626601 | Msa0543980:intron | 25.0% |
| ! | AACTAATTCCATTATACCTA+GGG | - | chr4_1:31626583-31626602 | Msa0543980:intron | 25.0% |
| ! | CTCTCATTCAATTTCAAAAA+GGG | + | chr4_1:31626695-31626714 | None:intergenic | 25.0% |
| ! | TCTCTCATTCAATTTCAAAA+AGG | + | chr4_1:31626696-31626715 | None:intergenic | 25.0% |
| ! | AAAACCATGTATATCATGAA+TGG | - | chr4_1:31627162-31627181 | Msa0543980:intron | 25.0% |
| !!! | TTGTTTTAGATGGTTTGAAA+CGG | - | chr4_1:31627540-31627559 | Msa0543980:intron | 25.0% |
| !!! | TTGATTTTTGAGGATTTAGT+AGG | + | chr4_1:31627592-31627611 | None:intergenic | 25.0% |
| !! | ATTTTCTCCATATGAAATCA+TGG | + | chr4_1:31628073-31628092 | None:intergenic | 25.0% |
| !! | AAAAATTGACTCTGAAAACT+TGG | - | chr4_1:31628246-31628265 | Msa0543980:intron | 25.0% |
| ! | ATTGGATATGATTAGATTTC+TGG | + | chr4_1:31628337-31628356 | None:intergenic | 25.0% |
| !! | CAAAACAACTTCTAAAGAAA+TGG | + | chr4_1:31628366-31628385 | None:intergenic | 25.0% |
| !!! | CATTTCTTTAGAAGTTGTTT+TGG | - | chr4_1:31628364-31628383 | Msa0543980:intron | 25.0% |
| !!! | TTTAGAAGTTGTTTTGGATA+TGG | - | chr4_1:31628370-31628389 | Msa0543980:intron | 25.0% |
| ! | TTAAATGACTAGGTACAATT+AGG | + | chr4_1:31628431-31628450 | None:intergenic | 25.0% |
| ! | TGTATCTAACTTAAATGACT+AGG | + | chr4_1:31628441-31628460 | None:intergenic | 25.0% |
| ! | TATAACAGGCATAACATATA+AGG | + | chr4_1:31628483-31628502 | None:intergenic | 25.0% |
| ! | TATGCCTGTTATATTATAAG+TGG | - | chr4_1:31628490-31628509 | Msa0543980:intron | 25.0% |
| ! | ATTATCATGTCAATAACAAC+CGG | + | chr4_1:31628544-31628563 | None:intergenic | 25.0% |
| ! | TAATCTATGTACAGGAAATT+AGG | - | chr4_1:31628664-31628683 | Msa0543980:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr4_1:31628860-31628879 | None:intergenic | 25.0% |
| ! | TAACAATCCTAACTAAAAAC+TGG | - | chr4_1:31628998-31629017 | Msa0543980:intron | 25.0% |
| ! | ATTTCTAAATCTAATTGCCA+TGG | - | chr4_1:31629556-31629575 | Msa0543980:intron | 25.0% |
| ! | GATATAAAAGAACAATTCCA+TGG | + | chr4_1:31629576-31629595 | None:intergenic | 25.0% |
| !! | TCTTTTATATCAGAGATATC+AGG | - | chr4_1:31629585-31629604 | Msa0543980:intron | 25.0% |
| ! | ACTCAATTTGCAGATAATAA+AGG | + | chr4_1:31629698-31629717 | None:intergenic | 25.0% |
| ! | CAAATTGAGTCTAATCTATT+TGG | - | chr4_1:31629708-31629727 | Msa0543980:intron | 25.0% |
| !!! | TAATCTATTTGGCTTTCTTA+AGG | - | chr4_1:31629719-31629738 | Msa0543980:intron | 25.0% |
| ! | GATGACATTTACATTTCAAT+AGG | - | chr4_1:31629747-31629766 | Msa0543980:intron | 25.0% |
| ! | TTGATGAATAGAATATGAAC+TGG | + | chr4_1:31630062-31630081 | None:intergenic | 25.0% |
| ! | AACAATTACTTGCAATTTGA+GGG | + | chr4_1:31630534-31630553 | None:intergenic | 25.0% |
| !!! | CAAGTGATAATGCATTTTAA+GGG | + | chr4_1:31630586-31630605 | None:intergenic | 25.0% |
| !!! | ACAAGTGATAATGCATTTTA+AGG | + | chr4_1:31630587-31630606 | None:intergenic | 25.0% |
| ! | GATGAGAAATGAATATTAAG+CGG | - | chr4_1:31630665-31630684 | Msa0543980:five_prime_UTR | 25.0% |
| ! | ATGAGAAATGAATATTAAGC+GGG | - | chr4_1:31630666-31630685 | Msa0543980:five_prime_UTR | 25.0% |
| !!! | GAAGAACTTGGATTTTGATT+TGG | + | chr4_1:31625461-31625480 | None:intergenic | 30.0% |
| AATTGGAGAAATGAGAGAAT+CGG | + | chr4_1:31625611-31625630 | None:intergenic | 30.0% | |
| TAGTACAAAACAAAACTACG+AGG | + | chr4_1:31625964-31625983 | None:intergenic | 30.0% | |
| !!! | GTAGTTTTGTTTTGTACTAC+TGG | - | chr4_1:31625965-31625984 | Msa0543980:CDS | 30.0% |
| ATACTGTTATGTAATTGAGC+TGG | - | chr4_1:31626344-31626363 | Msa0543980:intron | 30.0% | |
| !!! | TTGAGCTGGTTTTGAAATTT+TGG | - | chr4_1:31626358-31626377 | Msa0543980:CDS | 30.0% |
| !!! | TGAGCTGGTTTTGAAATTTT+GGG | - | chr4_1:31626359-31626378 | Msa0543980:CDS | 30.0% |
| !!! | GTTTTGAAATTTTGGGTGAT+TGG | - | chr4_1:31626366-31626385 | Msa0543980:CDS | 30.0% |
| ATTGGGCAAATTTAGTGTAT+AGG | - | chr4_1:31626384-31626403 | Msa0543980:CDS | 30.0% | |
| TTGGGCAAATTTAGTGTATA+GGG | - | chr4_1:31626385-31626404 | Msa0543980:CDS | 30.0% | |
| GGTTACTTAATTCTGCATAT+TGG | - | chr4_1:31626430-31626449 | Msa0543980:intron | 30.0% | |
| CATTCAATTTCAAAAAGGGA+GGG | + | chr4_1:31626691-31626710 | None:intergenic | 30.0% | |
| TCATTCAATTTCAAAAAGGG+AGG | + | chr4_1:31626692-31626711 | None:intergenic | 30.0% | |
| TTGAATGAGAGAGAAATCTA+TGG | - | chr4_1:31626704-31626723 | Msa0543980:intron | 30.0% | |
| TTCAGAATAACGATTACACA+TGG | + | chr4_1:31626745-31626764 | None:intergenic | 30.0% | |
| TCTATATAAATCAACCCGTT+CGG | + | chr4_1:31626768-31626787 | None:intergenic | 30.0% | |
| !! | ACGGGTTGATTTATATAGAT+TGG | - | chr4_1:31626769-31626788 | Msa0543980:intron | 30.0% |
| !! | CGGGTTGATTTATATAGATT+GGG | - | chr4_1:31626770-31626789 | Msa0543980:intron | 30.0% |
| TTGTATGCTAGTGTGATATA+TGG | - | chr4_1:31626989-31627008 | Msa0543980:intron | 30.0% | |
| AGCGATCAAAGAGATAAAAT+AGG | + | chr4_1:31627017-31627036 | None:intergenic | 30.0% | |
| ! | ATTTTATCTCTTTGATCGCT+TGG | - | chr4_1:31627017-31627036 | Msa0543980:intron | 30.0% |
| GTTCAGTATTTGCTTAAATC+TGG | - | chr4_1:31627133-31627152 | Msa0543980:intron | 30.0% | |
| CATAAAATACTAGAAACGCA+TGG | + | chr4_1:31627225-31627244 | None:intergenic | 30.0% | |
| CAAACTATTATGATAGCAAC+TGG | + | chr4_1:31627392-31627411 | None:intergenic | 30.0% | |
| ACATAGTAGATGAAGTTTCT+AGG | + | chr4_1:31627471-31627490 | None:intergenic | 30.0% | |
| ! | ATCTACTATGTTCTAGCTAT+GGG | - | chr4_1:31627480-31627499 | Msa0543980:intron | 30.0% |
| !!! | AGTAAGTGAGTTGATTTTTG+AGG | + | chr4_1:31627602-31627621 | None:intergenic | 30.0% |
| ACAATACAGAAAAGAGATAG+AGG | + | chr4_1:31627698-31627717 | None:intergenic | 30.0% | |
| ! | TTTTGTAGTTAGAGAAGTTG+TGG | - | chr4_1:31627759-31627778 | Msa0543980:intron | 30.0% |
| CAGTTATTTGAGAGGAAATT+GGG | - | chr4_1:31627912-31627931 | Msa0543980:intron | 30.0% | |
| AGTTATTTGAGAGGAAATTG+GGG | - | chr4_1:31627913-31627932 | Msa0543980:intron | 30.0% | |
| CAGTGAAATCATGAAAACAT+GGG | + | chr4_1:31628115-31628134 | None:intergenic | 30.0% | |
| ACAGTGAAATCATGAAAACA+TGG | + | chr4_1:31628116-31628135 | None:intergenic | 30.0% | |
| TTAGTTTAATGGGGAAACTT+TGG | - | chr4_1:31628189-31628208 | Msa0543980:intron | 30.0% | |
| !! | AGAGTCAATTTTTCAAACCA+AGG | + | chr4_1:31628239-31628258 | None:intergenic | 30.0% |
| TATAAGGAAAAGATGTCCAA+CGG | + | chr4_1:31628467-31628486 | None:intergenic | 30.0% | |
| GAAGCCACTTATAATATAAC+AGG | + | chr4_1:31628497-31628516 | None:intergenic | 30.0% | |
| TCTTATTAATACCTGTTTGC+AGG | - | chr4_1:31628515-31628534 | Msa0543980:intron | 30.0% | |
| TTATCATGTCAATAACAACC+GGG | + | chr4_1:31628543-31628562 | None:intergenic | 30.0% | |
| CTACAAAAGAAATCACAACA+TGG | + | chr4_1:31628596-31628615 | None:intergenic | 30.0% | |
| AGGAAATTAGGAGCTAAAAA+AGG | - | chr4_1:31628676-31628695 | Msa0543980:intron | 30.0% | |
| AATTAGGAGCTAAAAAAGGA+AGG | - | chr4_1:31628680-31628699 | Msa0543980:intron | 30.0% | |
| !!! | TATGGTTCCAGTTTTTAGTT+AGG | + | chr4_1:31629008-31629027 | None:intergenic | 30.0% |
| AAACTATATTTCGTGCAAGA+TGG | + | chr4_1:31629243-31629262 | None:intergenic | 30.0% | |
| ATACTATATTTCGTGCAAGA+TGG | + | chr4_1:31629394-31629413 | None:intergenic | 30.0% | |
| TAATTATGCATCACGTTATC+TGG | + | chr4_1:31629514-31629533 | None:intergenic | 30.0% | |
| TCAATTTGCAATAGAATTGC+TGG | - | chr4_1:31629952-31629971 | Msa0543980:intron | 30.0% | |
| TAGAATATGAACTGGTAGAA+TGG | + | chr4_1:31630054-31630073 | None:intergenic | 30.0% | |
| AATTGCACTATACAGATGAT+AGG | + | chr4_1:31630127-31630146 | None:intergenic | 30.0% | |
| ACAATTACTTGCAATTTGAG+GGG | + | chr4_1:31630533-31630552 | None:intergenic | 30.0% | |
| CAACAATTACTTGCAATTTG+AGG | + | chr4_1:31630535-31630554 | None:intergenic | 30.0% | |
| TGAGAAATGAATATTAAGCG+GGG | - | chr4_1:31630667-31630686 | Msa0543980:five_prime_UTR | 30.0% | |
| GGAAGATGATAAGAAGAACT+TGG | + | chr4_1:31625473-31625492 | None:intergenic | 35.0% | |
| TACCAAAGAATTGAACTCGT+TGG | + | chr4_1:31625831-31625850 | None:intergenic | 35.0% | |
| ! | AGTGGAGTGAAATGTGTTTT+AGG | - | chr4_1:31625924-31625943 | Msa0543980:CDS | 35.0% |
| TGGGCAAATTTAGTGTATAG+GGG | - | chr4_1:31626386-31626405 | Msa0543980:CDS | 35.0% | |
| AATCGTTATTCTGAACCGAA+CGG | - | chr4_1:31626750-31626769 | Msa0543980:intron | 35.0% | |
| ! | TAGCCTTGCAAAATGAGAAA+CGG | + | chr4_1:31626894-31626913 | None:intergenic | 35.0% |
| ! | TTTCTCATTTTGCAAGGCTA+TGG | - | chr4_1:31626894-31626913 | Msa0543980:intron | 35.0% |
| !! | GGTTGATAAGAAAGAAGAAG+AGG | - | chr4_1:31627038-31627057 | Msa0543980:intron | 35.0% |
| AGCTCCATTCATGATATACA+TGG | + | chr4_1:31627169-31627188 | None:intergenic | 35.0% | |
| GTATATCATGAATGGAGCTT+AGG | - | chr4_1:31627170-31627189 | Msa0543980:intron | 35.0% | |
| ! | TGTTGAATGCTTTTCTGTGT+TGG | - | chr4_1:31627292-31627311 | Msa0543980:intron | 35.0% |
| ! | GTTGAATGCTTTTCTGTGTT+GGG | - | chr4_1:31627293-31627312 | Msa0543980:intron | 35.0% |
| CAAAAACTAACATCACAGCT+AGG | + | chr4_1:31627431-31627450 | None:intergenic | 35.0% | |
| ! | GTAGATGAAGTTTCTAGGAA+GGG | + | chr4_1:31627466-31627485 | None:intergenic | 35.0% |
| ! | AGTAGATGAAGTTTCTAGGA+AGG | + | chr4_1:31627467-31627486 | None:intergenic | 35.0% |
| ! | CATCTACTATGTTCTAGCTA+TGG | - | chr4_1:31627479-31627498 | Msa0543980:intron | 35.0% |
| !! | GGAGGAAGTATAACAAGTTT+TGG | + | chr4_1:31627665-31627684 | None:intergenic | 35.0% |
| AAAAGAGATAGAGGAGAATG+AGG | + | chr4_1:31627689-31627708 | None:intergenic | 35.0% | |
| TGTGAAGTAACTGTTAGTAG+TGG | - | chr4_1:31627715-31627734 | Msa0543980:intron | 35.0% | |
| TGTTGTAGTTAGAGAAGTTG+TGG | - | chr4_1:31627852-31627871 | Msa0543980:intron | 35.0% | |
| TAAGCATCCAGTTATTTGAG+AGG | - | chr4_1:31627904-31627923 | Msa0543980:intron | 35.0% | |
| CCAATTTCCTCTCAAATAAC+TGG | + | chr4_1:31627914-31627933 | None:intergenic | 35.0% | |
| CCAGTTATTTGAGAGGAAAT+TGG | - | chr4_1:31627911-31627930 | Msa0543980:intron | 35.0% | |
| !!! | AGTTGTTTTGGATATGGATG+TGG | - | chr4_1:31628376-31628395 | Msa0543980:intron | 35.0% |
| TGTGAACACAACTCATTAGA+AGG | + | chr4_1:31628408-31628427 | None:intergenic | 35.0% | |
| TTCTACTCTTAACTTCTCAC+TGG | - | chr4_1:31628710-31628729 | Msa0543980:intron | 35.0% | |
| CCTTTATGTTTGGGTAATCT+AGG | + | chr4_1:31628740-31628759 | None:intergenic | 35.0% | |
| CCTAGATTACCCAAACATAA+AGG | - | chr4_1:31628737-31628756 | Msa0543980:intron | 35.0% | |
| ATGCAAATTACCTAAGCTGA+TGG | - | chr4_1:31628771-31628790 | Msa0543980:intron | 35.0% | |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr4_1:31628854-31628873 | None:intergenic | 35.0% |
| TCTCAAATAATTAGCGGTGT+CGG | - | chr4_1:31628891-31628910 | Msa0543980:intron | 35.0% | |
| CAAGTTATGAAGCATGGATA+CGG | + | chr4_1:31628945-31628964 | None:intergenic | 35.0% | |
| TATGCACAAGTTATGAAGCA+TGG | + | chr4_1:31628951-31628970 | None:intergenic | 35.0% | |
| CTAGATAGCTGAGATATACA+CGG | + | chr4_1:31629049-31629068 | None:intergenic | 35.0% | |
| !! | AGTTCTGAACTGCTAACTTT+AGG | - | chr4_1:31629159-31629178 | Msa0543980:intron | 35.0% |
| ATGCTATATTTCGTGCAAGA+TGG | + | chr4_1:31629437-31629456 | None:intergenic | 35.0% | |
| !! | TCTATTTGGCTTTCTTAAGG+TGG | - | chr4_1:31629722-31629741 | Msa0543980:intron | 35.0% |
| ! | AAGAAACTTTGAGAGAAGTG+TGG | - | chr4_1:31629789-31629808 | Msa0543980:intron | 35.0% |
| ! | AGAAACTTTGAGAGAAGTGT+GGG | - | chr4_1:31629790-31629809 | Msa0543980:intron | 35.0% |
| !!! | TTGTCTCACTGGTTTTACTT+GGG | + | chr4_1:31629864-31629883 | None:intergenic | 35.0% |
| !!! | TTTGTCTCACTGGTTTTACT+TGG | + | chr4_1:31629865-31629884 | None:intergenic | 35.0% |
| ! | GATATACATGAAAGTGGGTT+TGG | - | chr4_1:31630011-31630030 | Msa0543980:intron | 35.0% |
| ACTATACAGATGATAGGACA+TGG | + | chr4_1:31630121-31630140 | None:intergenic | 35.0% | |
| !! | CTTGTTTTCTTCAACCATGT+TGG | - | chr4_1:31630335-31630354 | Msa0543980:intron | 35.0% |
| AATGAACTCCTAATGACATG+TGG | + | chr4_1:31630369-31630388 | None:intergenic | 35.0% | |
| AAAACACATCACCGAAGTTT+CGG | + | chr4_1:31630501-31630520 | None:intergenic | 35.0% | |
| AATTACTTGCAATTTGAGGG+GGG | + | chr4_1:31630531-31630550 | None:intergenic | 35.0% | |
| CAATTACTTGCAATTTGAGG+GGG | + | chr4_1:31630532-31630551 | None:intergenic | 35.0% | |
| !! | TTGATTTGGCTGATCTGAGA+AGG | + | chr4_1:31625447-31625466 | None:intergenic | 40.0% |
| GGTTGAAGAAAGAGAAGAAG+AGG | + | chr4_1:31625494-31625513 | None:intergenic | 40.0% | |
| TAAACCATTGACATGTCCCT+TGG | + | chr4_1:31625789-31625808 | None:intergenic | 40.0% | |
| AATGGTTTACCTAAGCTTGC+TGG | - | chr4_1:31625800-31625819 | Msa0543980:intron | 40.0% | |
| TGCCAACGAGTTCAATTCTT+TGG | - | chr4_1:31625826-31625845 | Msa0543980:intron | 40.0% | |
| ! | TTTTCCGCCAGGTAGTAAAT+CGG | + | chr4_1:31626257-31626276 | None:intergenic | 40.0% |
| !!! | TTCACAACATTTTTTCCGCC+AGG | + | chr4_1:31626268-31626287 | None:intergenic | 40.0% |
| ATCGTTATTCTGAACCGAAC+GGG | - | chr4_1:31626751-31626770 | Msa0543980:intron | 40.0% | |
| AGCCTTGCAAAATGAGAAAC+GGG | + | chr4_1:31626893-31626912 | None:intergenic | 40.0% | |
| ! | CTTGTGTGACTTTTATGCTC+TGG | - | chr4_1:31626948-31626967 | Msa0543980:intron | 40.0% |
| ! | TGTGACTTTTATGCTCTGGT+AGG | - | chr4_1:31626952-31626971 | Msa0543980:intron | 40.0% |
| !!! | GGCTTTTTCAGGACAGTATA+TGG | + | chr4_1:31627204-31627223 | None:intergenic | 40.0% |
| !! | TAGAAACGCATGGCTTTTTC+AGG | + | chr4_1:31627215-31627234 | None:intergenic | 40.0% |
| GTCAGACTGTCTGTTGTTAT+TGG | - | chr4_1:31627351-31627370 | Msa0543980:intron | 40.0% | |
| AACAGAACCAAGGTGATTCT+TGG | + | chr4_1:31627639-31627658 | None:intergenic | 40.0% | |
| AACTGATAGCAGGAAAAGAG+AGG | - | chr4_1:31627881-31627900 | Msa0543980:intron | 40.0% | |
| TCTAGTGTTTAGCAGAAGCA+AGG | - | chr4_1:31627977-31627996 | Msa0543980:intron | 40.0% | |
| ! | ATGGGGAAACTTTGGCTTAA+TGG | - | chr4_1:31628197-31628216 | Msa0543980:intron | 40.0% |
| ! | TGGGGAAACTTTGGCTTAAT+GGG | - | chr4_1:31628198-31628217 | Msa0543980:intron | 40.0% |
| TTGGCTTAATGGGAGATTCA+TGG | - | chr4_1:31628208-31628227 | Msa0543980:intron | 40.0% | |
| AAGCTAATTCCATCGTACCT+AGG | - | chr4_1:31628291-31628310 | Msa0543980:intron | 40.0% | |
| AGCTAATTCCATCGTACCTA+GGG | - | chr4_1:31628292-31628311 | Msa0543980:intron | 40.0% | |
| ! | TTTTGGATATGGATGTGGTC+TGG | - | chr4_1:31628381-31628400 | Msa0543980:intron | 40.0% |
| TAAGTTAGATACACCTCCGT+TGG | - | chr4_1:31628448-31628467 | Msa0543980:intron | 40.0% | |
| CATGGTAAGCATCATGTAGA+AGG | + | chr4_1:31628578-31628597 | None:intergenic | 40.0% | |
| TAAGCTGATGGAATGAAGCA+CGG | - | chr4_1:31628783-31628802 | Msa0543980:intron | 40.0% | |
| CAATCGCAACATGTCAAAGA+AGG | + | chr4_1:31629198-31629217 | None:intergenic | 40.0% | |
| CTGGAACAATGCATTTGTTC+AGG | + | chr4_1:31629301-31629320 | None:intergenic | 40.0% | |
| TATCAGAGATATCAGGCTCT+TGG | - | chr4_1:31629592-31629611 | Msa0543980:intron | 40.0% | |
| ! | CAATAGCATTGGATTCTTGG+TGG | + | chr4_1:31629668-31629687 | None:intergenic | 40.0% |
| CACCAAGAATCCAATGCTAT+TGG | - | chr4_1:31629666-31629685 | Msa0543980:intron | 40.0% | |
| ! | CACCAATAGCATTGGATTCT+TGG | + | chr4_1:31629671-31629690 | None:intergenic | 40.0% |
| AAGGAACTCACCAATAGCAT+TGG | + | chr4_1:31629679-31629698 | None:intergenic | 40.0% | |
| !! | AGGAGATAATGGACGAAAAC+CGG | + | chr4_1:31629893-31629912 | None:intergenic | 40.0% |
| ACAGGAAGATGAGGAGATAA+TGG | + | chr4_1:31629904-31629923 | None:intergenic | 40.0% | |
| ! | TACATGAAAGTGGGTTTGGT+TGG | - | chr4_1:31630015-31630034 | Msa0543980:intron | 40.0% |
| GAACTGGTAGAATGGATCAA+AGG | + | chr4_1:31630046-31630065 | None:intergenic | 40.0% | |
| TCAAACACTGTTCAGGTATC+AGG | + | chr4_1:31630181-31630200 | None:intergenic | 40.0% | |
| CTCAGAATCAAACACTGTTC+AGG | + | chr4_1:31630188-31630207 | None:intergenic | 40.0% | |
| CTGAACAGTGTTTGATTCTG+AGG | - | chr4_1:31630186-31630205 | Msa0543980:intron | 40.0% | |
| CATGCTTTCCACATGTCATT+AGG | - | chr4_1:31630358-31630377 | Msa0543980:intron | 40.0% | |
| ! | CTGTTTTCCATCCGAAACTT+CGG | - | chr4_1:31630487-31630506 | Msa0543980:CDS | 40.0% |
| ATTACTTGCAATTTGAGGGG+GGG | + | chr4_1:31630530-31630549 | None:intergenic | 40.0% | |
| TGATCTGAGAAGGCAAGACA+TGG | + | chr4_1:31625437-31625456 | None:intergenic | 45.0% | |
| ! | ATGAGAGAATCGGTACCGAA+GGG | + | chr4_1:31625601-31625620 | None:intergenic | 45.0% |
| ! | AATGAGAGAATCGGTACCGA+AGG | + | chr4_1:31625602-31625621 | None:intergenic | 45.0% |
| AGCGGATGAAAACTCTACCA+AGG | - | chr4_1:31625769-31625788 | Msa0543980:intron | 45.0% | |
| GCGGATGAAAACTCTACCAA+GGG | - | chr4_1:31625770-31625789 | Msa0543980:intron | 45.0% | |
| TCTACCAAGGGACATGTCAA+TGG | - | chr4_1:31625782-31625801 | Msa0543980:intron | 45.0% | |
| CCAGGTAGTAAATCGGTCAA+AGG | + | chr4_1:31626250-31626269 | None:intergenic | 45.0% | |
| ! | CCTTTGACCGATTTACTACC+TGG | - | chr4_1:31626247-31626266 | Msa0543980:CDS | 45.0% |
| ! | TTGACCGATTTACTACCTGG+CGG | - | chr4_1:31626250-31626269 | Msa0543980:CDS | 45.0% |
| CTAGTTTAACGGGGAAGCTT+CGG | - | chr4_1:31626483-31626502 | Msa0543980:intron | 45.0% | |
| GGAGACTCATGGGAAAACAT+TGG | - | chr4_1:31626513-31626532 | Msa0543980:intron | 45.0% | |
| ACGAACAGCCCTAGGTATAA+TGG | + | chr4_1:31626594-31626613 | None:intergenic | 45.0% | |
| TTCAAAAAGGGAGGGAGACA+TGG | + | chr4_1:31626683-31626702 | None:intergenic | 45.0% | |
| ! | AGCCCGTTTCTCATTTTGCA+AGG | - | chr4_1:31626888-31626907 | Msa0543980:intron | 45.0% |
| TCTGCATGTATGCACTACAG+TGG | - | chr4_1:31627327-31627346 | Msa0543980:intron | 45.0% | |
| CTGCATGTATGCACTACAGT+GGG | - | chr4_1:31627328-31627347 | Msa0543980:intron | 45.0% | |
| TGCATGTATGCACTACAGTG+GGG | - | chr4_1:31627329-31627348 | Msa0543980:intron | 45.0% | |
| GAACCAAGGTGATTCTTGGA+GGG | + | chr4_1:31627635-31627654 | None:intergenic | 45.0% | |
| AGAACCAAGGTGATTCTTGG+AGG | + | chr4_1:31627636-31627655 | None:intergenic | 45.0% | |
| !!! | GTTTTGGCTGAACAGAACCA+AGG | + | chr4_1:31627649-31627668 | None:intergenic | 45.0% |
| AGAGATAGAGGAGAATGAGG+AGG | + | chr4_1:31627686-31627705 | None:intergenic | 45.0% | |
| GTGGTGTCTAAACTGATAGC+AGG | - | chr4_1:31627871-31627890 | Msa0543980:intron | 45.0% | |
| TTGAGAGGAAATTGGGGCTT+TGG | - | chr4_1:31627919-31627938 | Msa0543980:intron | 45.0% | |
| ! | GGAAATTGGGGCTTTGGTTT+AGG | - | chr4_1:31627925-31627944 | Msa0543980:intron | 45.0% |
| GGAGATTCATGGTGAAACCT+TGG | - | chr4_1:31628219-31628238 | Msa0543980:intron | 45.0% | |
| ACTAAACCACAAACAGCCCT+AGG | + | chr4_1:31628311-31628330 | None:intergenic | 45.0% | |
| AAGGAAAAGATGTCCAACGG+AGG | + | chr4_1:31628464-31628483 | None:intergenic | 45.0% | |
| AATACCTGTTTGCAGGTTCC+CGG | - | chr4_1:31628522-31628541 | Msa0543980:intron | 45.0% | |
| GTGCTTCATTCCATCAGCTT+AGG | + | chr4_1:31628784-31628803 | None:intergenic | 45.0% | |
| AATGAAGCACGGATACTCCT+CGG | - | chr4_1:31628794-31628813 | Msa0543980:intron | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | + | chr4_1:31628939-31628958 | None:intergenic | 45.0% | |
| ATAGGGACTCAACACTCTGA+TGG | - | chr4_1:31629765-31629784 | Msa0543980:intron | 45.0% | |
| GGCTGATAAACAGGAAGATG+AGG | + | chr4_1:31629913-31629932 | None:intergenic | 45.0% | |
| GAAAGCTGAGGCTGATAAAC+AGG | + | chr4_1:31629922-31629941 | None:intergenic | 45.0% | |
| AAATCTCAACGGCAAGTAGG+TGG | + | chr4_1:31630089-31630108 | None:intergenic | 45.0% | |
| CAGAAATCTCAACGGCAAGT+AGG | + | chr4_1:31630092-31630111 | None:intergenic | 45.0% | |
| GGCTAAGGCAGAAATCTCAA+CGG | + | chr4_1:31630100-31630119 | None:intergenic | 45.0% | |
| CAGATGATAGGACATGGCTA+AGG | + | chr4_1:31630115-31630134 | None:intergenic | 45.0% | |
| ! | ATGTGGAAAGCATGCCAACA+TGG | + | chr4_1:31630352-31630371 | None:intergenic | 45.0% |
| !! | ATTAAATTAATTGAAAAAAT+TGG | + | chr4_1:31625628-31625647 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGATCGAC+GGG | + | chr4_1:31625352-31625371 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGATCGA+CGG | + | chr4_1:31625353-31625372 | None:intergenic | 50.0% | |
| TTGGCATGACCAGCAAGCTT+AGG | + | chr4_1:31625812-31625831 | None:intergenic | 50.0% | |
| ACTCAATCACGAACAGCCCT+AGG | + | chr4_1:31626602-31626621 | None:intergenic | 50.0% | |
| TTGCCTGAGACTTGCACAAC+TGG | - | chr4_1:31626814-31626833 | Msa0543980:intron | 50.0% | |
| AAGCCCTCCAAGAATCACCT+TGG | - | chr4_1:31627629-31627648 | Msa0543980:intron | 50.0% | |
| GATAGAGGAGAATGAGGAGG+AGG | + | chr4_1:31627683-31627702 | None:intergenic | 50.0% | |
| ! | AAGCCTTATCCCACTACGTG+GGG | + | chr4_1:31627808-31627827 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACTACGT+GGG | + | chr4_1:31627809-31627828 | None:intergenic | 50.0% |
| ! | TTGGGGCTTTGGTTTAGGCA+AGG | - | chr4_1:31627930-31627949 | Msa0543980:intron | 50.0% |
| ! | TGGGGCTTTGGTTTAGGCAA+GGG | - | chr4_1:31627931-31627950 | Msa0543980:intron | 50.0% |
| ACAAACAGCCCTAGGTACGA+TGG | + | chr4_1:31628303-31628322 | None:intergenic | 50.0% | |
| ATCGTACCTAGGGCTGTTTG+TGG | - | chr4_1:31628302-31628321 | Msa0543980:intron | 50.0% | |
| GGATTAGACATGTCCCGTGT+CGG | - | chr4_1:31628815-31628834 | Msa0543980:intron | 50.0% | |
| GAGATATCAGGCTCTTGGAC+TGG | - | chr4_1:31629597-31629616 | Msa0543980:intron | 50.0% | |
| ! | TGGACTGGACACTAATGTGC+TGG | - | chr4_1:31629612-31629631 | Msa0543980:intron | 50.0% |
| !! | AAGTGTGGGTGCTGACACAT+TGG | - | chr4_1:31629804-31629823 | Msa0543980:intron | 50.0% |
| !! | AGTGTGGGTGCTGACACATT+GGG | - | chr4_1:31629805-31629824 | Msa0543980:intron | 50.0% |
| ACCAGTGAGACAAAGCAGTC+CGG | - | chr4_1:31629871-31629890 | Msa0543980:intron | 50.0% | |
| !! | GAAAGCGTCGAAGAAAGCTG+AGG | + | chr4_1:31629934-31629953 | None:intergenic | 50.0% |
| AAAGCAAGGTGACAGCAGCT+AGG | + | chr4_1:31629984-31630003 | None:intergenic | 50.0% | |
| CACATCACCGAAGTTTCGGA+TGG | + | chr4_1:31630497-31630516 | None:intergenic | 50.0% | |
| AGAGAGAGATCGACGGGGTT+GGG | + | chr4_1:31625346-31625365 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGATCGACG+GGG | + | chr4_1:31625351-31625370 | None:intergenic | 55.0% | |
| !! | AGGGAAGAGTGGTGGTGGTA+CGG | + | chr4_1:31625582-31625601 | None:intergenic | 55.0% |
| ACCACCACCACTCTTCCCTT+CGG | - | chr4_1:31625583-31625602 | Msa0543980:three_prime_UTR | 55.0% | |
| ! | ATCGGTACCGAAGGGAAGAG+TGG | + | chr4_1:31625593-31625612 | None:intergenic | 55.0% |
| ! | ACGGGGAAGCTTCGGTTTGA+CGG | - | chr4_1:31626491-31626510 | Msa0543980:intron | 55.0% |
| ! | TCGGTTTGACGGGAGACTCA+TGG | - | chr4_1:31626502-31626521 | Msa0543980:intron | 55.0% |
| CGGTTTGACGGGAGACTCAT+GGG | - | chr4_1:31626503-31626522 | Msa0543980:intron | 55.0% | |
| GTGCCAGTTGTGCAAGTCTC+AGG | + | chr4_1:31626820-31626839 | None:intergenic | 55.0% | |
| CTTATCCCACTACGTGGGGT+CGG | + | chr4_1:31627804-31627823 | None:intergenic | 55.0% | |
| ! | CCAAGCCTTATCCCACTACG+TGG | + | chr4_1:31627810-31627829 | None:intergenic | 55.0% |
| ! | CCACGTAGTGGGATAAGGCT+TGG | - | chr4_1:31627807-31627826 | Msa0543980:intron | 55.0% |
| ACAACCGGGAACCTGCAAAC+AGG | + | chr4_1:31628529-31628548 | None:intergenic | 55.0% | |
| CACGGGACATGTCTAATCCG+AGG | + | chr4_1:31628814-31628833 | None:intergenic | 55.0% | |
| ATACGGACACGGACATGACG+CGG | + | chr4_1:31628928-31628947 | None:intergenic | 55.0% | |
| ! | CTGGACACTAATGTGCTGGC+TGG | - | chr4_1:31629616-31629635 | Msa0543980:intron | 55.0% |
| !! | GTGCTGGCTGGAGCTAGATA+TGG | - | chr4_1:31629628-31629647 | Msa0543980:intron | 55.0% |
| !! | GGGTGCTGACACATTGGGAT+TGG | - | chr4_1:31629810-31629829 | Msa0543980:intron | 55.0% |
| ! | GCTGACACATTGGGATTGGC+TGG | - | chr4_1:31629814-31629833 | Msa0543980:intron | 55.0% |
| ACCGGACTGCTTTGTCTCAC+TGG | + | chr4_1:31629875-31629894 | None:intergenic | 55.0% | |
| GAGAGAGATCGACGGGGTTG+GGG | + | chr4_1:31625345-31625364 | None:intergenic | 60.0% | |
| GAGAGAGAGATCGACGGGGT+TGG | + | chr4_1:31625347-31625366 | None:intergenic | 60.0% | |
| GGAGCGAGGGATGGAAGAGA+AGG | + | chr4_1:31625515-31625534 | None:intergenic | 60.0% | |
| TCTTCCATCCCTCGCTCCAC+CGG | - | chr4_1:31625517-31625536 | Msa0543980:three_prime_UTR | 60.0% | |
| !! | GGTACGGTGGAGGTGTTCTG+CGG | + | chr4_1:31625566-31625585 | None:intergenic | 60.0% |
| !! | GAAGAGTGGTGGTGGTACGG+TGG | + | chr4_1:31625579-31625598 | None:intergenic | 60.0% |
| ACCGAAGGGAAGAGTGGTGG+TGG | + | chr4_1:31625587-31625606 | None:intergenic | 60.0% | |
| ! | GGTACCGAAGGGAAGAGTGG+TGG | + | chr4_1:31625590-31625609 | None:intergenic | 60.0% |
| ! | CGGGGAAGCTTCGGTTTGAC+GGG | - | chr4_1:31626492-31626511 | Msa0543980:intron | 60.0% |
| ACTACGTGGGGTCGGCTACA+TGG | + | chr4_1:31627796-31627815 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACGTAG+TGG | - | chr4_1:31627795-31627814 | Msa0543980:intron | 60.0% | |
| TGTAGCCGACCCCACGTAGT+GGG | - | chr4_1:31627796-31627815 | Msa0543980:intron | 60.0% | |
| ! | CGACCCCACGTAGTGGGATA+AGG | - | chr4_1:31627802-31627821 | Msa0543980:intron | 60.0% |
| ACACGACACGTGTCCGACAC+GGG | + | chr4_1:31628831-31628850 | None:intergenic | 60.0% | |
| GACACGACACGTGTCCGACA+CGG | + | chr4_1:31628832-31628851 | None:intergenic | 60.0% | |
| AGAGGGATCCGGTGGAGCGA+GGG | + | chr4_1:31625528-31625547 | None:intergenic | 65.0% | |
| !! | ACGGTGGAGGTGTTCTGCGG+CGG | + | chr4_1:31625563-31625582 | None:intergenic | 65.0% |
| !! | GAGTGGTGGTGGTACGGTGG+AGG | + | chr4_1:31625576-31625595 | None:intergenic | 65.0% |
| ATCGACGGGGTTGGGGCGTG+TGG | + | chr4_1:31625338-31625357 | None:intergenic | 70.0% | |
| GGATCCGGTGGAGCGAGGGA+TGG | + | chr4_1:31625524-31625543 | None:intergenic | 70.0% | |
| GAGAGGGATCCGGTGGAGCG+AGG | + | chr4_1:31625529-31625548 | None:intergenic | 70.0% | |
| !! | GGTGGCGGGAGAGAGGGATC+CGG | + | chr4_1:31625539-31625558 | None:intergenic | 70.0% |
| !! | GTGGAGGTGTTCTGCGGCGG+CGG | + | chr4_1:31625560-31625579 | None:intergenic | 70.0% |
| GGCGGGAGAGAGGGATCCGG+TGG | + | chr4_1:31625536-31625555 | None:intergenic | 75.0% | |
| TGTTCTGCGGCGGCGGTGGC+GGG | + | chr4_1:31625553-31625572 | None:intergenic | 75.0% | |
| GTGTTCTGCGGCGGCGGTGG+CGG | + | chr4_1:31625554-31625573 | None:intergenic | 75.0% | |
| ! | GAGGTGTTCTGCGGCGGCGG+TGG | + | chr4_1:31625557-31625576 | None:intergenic | 75.0% |
| !!! | GGCGGCGGTGGCGGGAGAGA+GGG | + | chr4_1:31625545-31625564 | None:intergenic | 80.0% |
| !!! | CGGCGGCGGTGGCGGGAGAG+AGG | + | chr4_1:31625546-31625565 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 31625335 | 31630709 | 31625335 | ID=Msa0543980;Name=Msa0543980 |
| chr4_1 | mRNA | 31625335 | 31630709 | 31625335 | ID=Msa0543980-mRNA-1;Parent=Msa0543980;Name=Msa0543980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=101|1|1|1|0.75|0.6|5|424|243 |
| chr4_1 | exon | 31625335 | 31625715 | 31625335 | ID=Msa0543980-mRNA-1:exon:8181;Parent=Msa0543980-mRNA-1 |
| chr4_1 | exon | 31625837 | 31626275 | 31625837 | ID=Msa0543980-mRNA-1:exon:8180;Parent=Msa0543980-mRNA-1 |
| chr4_1 | exon | 31626357 | 31626446 | 31626357 | ID=Msa0543980-mRNA-1:exon:8179;Parent=Msa0543980-mRNA-1 |
| chr4_1 | exon | 31630197 | 31630273 | 31630197 | ID=Msa0543980-mRNA-1:exon:8178;Parent=Msa0543980-mRNA-1 |
| chr4_1 | exon | 31630440 | 31630709 | 31630440 | ID=Msa0543980-mRNA-1:exon:8177;Parent=Msa0543980-mRNA-1 |
| chr4_1 | five_prime_UTR | 31630609 | 31630709 | 31630609 | ID=Msa0543980-mRNA-1:five_prime_utr;Parent=Msa0543980-mRNA-1 |
| chr4_1 | CDS | 31630440 | 31630608 | 31630440 | ID=Msa0543980-mRNA-1:cds;Parent=Msa0543980-mRNA-1 |
| chr4_1 | CDS | 31630197 | 31630273 | 31630197 | ID=Msa0543980-mRNA-1:cds;Parent=Msa0543980-mRNA-1 |
| chr4_1 | CDS | 31626357 | 31626446 | 31626357 | ID=Msa0543980-mRNA-1:cds;Parent=Msa0543980-mRNA-1 |
| chr4_1 | CDS | 31625880 | 31626275 | 31625880 | ID=Msa0543980-mRNA-1:cds;Parent=Msa0543980-mRNA-1 |
| chr4_1 | three_prime_UTR | 31625837 | 31625879 | 31625837 | ID=Msa0543980-mRNA-1:three_prime_utr;Parent=Msa0543980-mRNA-1 |
| chr4_1 | three_prime_UTR | 31625335 | 31625715 | 31625335 | ID=Msa0543980-mRNA-1:three_prime_utr;Parent=Msa0543980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
